BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022576
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8F7K3|RIMP_LEPIN Ribosome maturation factor RimP OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=rimP
PE=3 SV=1
Length = 162
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 15/106 (14%)
Query: 142 IKLYAFKATPR---GYVYVRLDKL-----SNNMEELESYSQEYKKKLDEVGALGEIPD-D 192
+KLY+ K R + V LD L S ++ E E S++ K++L+ + PD D
Sbjct: 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERIS-----PDLD 74
Query: 193 LALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVF 238
L+VS+ GAER L +P DL RF+ +PI + + ++S+ +E+ G+F
Sbjct: 75 YTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEESE-KEQEGIF 119
>sp|Q72NX1|RIMP_LEPIC Ribosome maturation factor RimP OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=rimP PE=3 SV=1
Length = 162
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 15/106 (14%)
Query: 142 IKLYAFKATPR---GYVYVRLDKL-----SNNMEELESYSQEYKKKLDEVGALGEIPD-D 192
+KLY+ K R + V LD L S ++ E E S++ K++L+ + PD D
Sbjct: 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERIS-----PDLD 74
Query: 193 LALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVF 238
L+VS+ GAER L +P DL RF+ +PI + + ++S+ +E+ G+F
Sbjct: 75 YTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEESE-KEQEGIF 119
>sp|Q04ZJ3|RIMP_LEPBL Ribosome maturation factor RimP OS=Leptospira borgpetersenii
serovar Hardjo-bovis (strain L550) GN=rimP PE=3 SV=1
Length = 162
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 20/125 (16%)
Query: 128 LSIAHEVLLQLGDD-----IKLYAFKATPR---GYVYVRLDKL-----SNNMEELESYSQ 174
++++ E + + DD +KLY+ K R + V LD L S ++ E E S+
Sbjct: 1 MTVSREEISTILDDALFLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSR 60
Query: 175 EYKKKLDEVGALGEIPD-DLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSRE 233
+ K++L+ + PD D L+VS+ GAER L +P+D+ RF+ +P+ + + +S+ +
Sbjct: 61 KLKEELERIS-----PDLDFTLKVSSAGAERKLHLPEDIDRFRGIPVRLVFRSGESE-KN 114
Query: 234 KTGVF 238
+ G+F
Sbjct: 115 QEGIF 119
>sp|Q04U33|RIMP_LEPBJ Ribosome maturation factor RimP OS=Leptospira borgpetersenii
serovar Hardjo-bovis (strain JB197) GN=rimP PE=3 SV=1
Length = 162
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 20/125 (16%)
Query: 128 LSIAHEVLLQLGDD-----IKLYAFKATPR---GYVYVRLDKL-----SNNMEELESYSQ 174
++++ E + + DD +KLY+ K R + V LD L S ++ E E S+
Sbjct: 1 MTVSREEISTILDDALFLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSR 60
Query: 175 EYKKKLDEVGALGEIPD-DLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSRE 233
+ K++L+ + PD D L+VS+ GAER L +P+D+ RF+ +P+ + + +S+ +
Sbjct: 61 KLKEELERIS-----PDLDFTLKVSSAGAERKLHLPEDIDRFRGIPVRLVFRSGESE-KN 114
Query: 234 KTGVF 238
+ G+F
Sbjct: 115 QEGIF 119
>sp|Q5N0A8|RIMP_SYNP6 Ribosome maturation factor RimP OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=rimP PE=3 SV=1
Length = 153
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 138 LGDDIKLYAFKA---TPRGYVYVRLDKLS----NNMEELESYSQEYKKKLDEVGALGEIP 190
+ DD+ L +A T + +RLD S +E+ E S+ ++ LDE IP
Sbjct: 16 IADDLDLEVVQAVFHTNQSPPILRLDIRSRVGDTGLEDCERMSRSFELALDEANI---IP 72
Query: 191 DDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFL 239
D LE+S+PG L+ D FK P+ V + D+ E+ G L
Sbjct: 73 DAYVLEISSPGLSDTLESDRDFLSFKGFPVQVTSRSPNDDTVEQQGTLL 121
>sp|Q31LL6|RIMP_SYNE7 Ribosome maturation factor RimP OS=Synechococcus elongatus (strain
PCC 7942) GN=rimP PE=3 SV=1
Length = 153
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 138 LGDDIKLYAFKA---TPRGYVYVRLDKLS----NNMEELESYSQEYKKKLDEVGALGEIP 190
+ DD+ L +A T + +RLD S +E+ E S+ ++ LDE IP
Sbjct: 16 IADDLDLEVVQAVFHTNQSPPILRLDIRSRVGDTGLEDCERMSRSFELALDEANI---IP 72
Query: 191 DDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFL 239
D LE+S+PG L+ D FK P+ V + D+ E+ G L
Sbjct: 73 DAYVLEISSPGLSDTLESDRDFLSFKGFPVQVTSRSPNDDTVEQQGTLL 121
>sp|B0SQH2|RIMP_LEPBP Ribosome maturation factor RimP OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=rimP PE=3 SV=1
Length = 162
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 12/102 (11%)
Query: 129 SIAHEVLLQLGDDIKLYAFKATPR---GYVYVRLDKL-----SNNMEELESYSQEYKKKL 180
+I +L L + L++ + R + + LD L S ++E+ E+ S+ K++L
Sbjct: 7 NIRELILRVLAPPLALFSLQVQNRKNHALIEIELDHLTDKTGSASLEDCETVSRRLKEEL 66
Query: 181 DEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV 222
D+ G D L+VS+ GAER+L++P+DL RF+ + + +
Sbjct: 67 DQWGE----EFDFTLQVSSAGAERVLRLPEDLIRFQGLLVKL 104
>sp|B0SH16|RIMP_LEPBA Ribosome maturation factor RimP OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=rimP PE=3 SV=1
Length = 162
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 12/102 (11%)
Query: 129 SIAHEVLLQLGDDIKLYAFKATPR---GYVYVRLDKL-----SNNMEELESYSQEYKKKL 180
+I +L L + L++ + R + + LD L S ++E+ E+ S+ K++L
Sbjct: 7 NIRELILRVLAPPLALFSLQVQNRKNHALIEIELDHLTDKTGSASLEDCETVSRRLKEEL 66
Query: 181 DEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV 222
D+ G D L+VS+ GAER+L++P+DL RF+ + + +
Sbjct: 67 DQWGE----EFDFTLQVSSAGAERVLRLPEDLIRFQGLLVKL 104
>sp|B1I359|RIMP_DESAP Ribosome maturation factor RimP OS=Desulforudis audaxviator (strain
MP104C) GN=rimP PE=3 SV=1
Length = 154
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 152 RGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPD 210
R Y+ V LDK N+++ E+ S+E + LD+V IP LEVS+PG ER LK +
Sbjct: 36 RRYLRVFLDKPGGINLDDCEAVSRELDRALDDVDF---IPHSYVLEVSSPGLERPLKRAE 92
Query: 211 DLGRFK 216
D RFK
Sbjct: 93 DYVRFK 98
>sp|C5D9C5|RIMP_GEOSW Ribosome maturation factor RimP OS=Geobacillus sp. (strain WCH70)
GN=rimP PE=3 SV=1
Length = 157
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 165 NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGR 214
++E+ S++ +KLDEV IP + LEVS+PGAER LK P D +
Sbjct: 49 DIEQCGMVSEKLSEKLDEVDP---IPHNYFLEVSSPGAERPLKKPKDFTK 95
>sp|Q8FPA4|RIMP_COREF Ribosome maturation factor RimP OS=Corynebacterium efficiens
(strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC
100395) GN=rimP PE=3 SV=2
Length = 182
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 144 LYAFKATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIP--DDLALEVSTP 200
L KA P+ V ++LD S +++ LE SQE + D A GE+ LEVSTP
Sbjct: 27 LRVTKAGPKSTVAIKLDSDSRPDLDLLEVVSQEIGELFDAAEARGELSFGAGYLLEVSTP 86
Query: 201 GAERMLKVPDDLGRFKEMPITVCYEDQDSDSR------EKTGVFLLDSIEMDSEICVWKL 254
G + L P R + +++ + + +R E+T V L++ + + V +L
Sbjct: 87 GVDMPLTQPRHWRRNRTRLVSLDVDGKKRIARIGALNAEETAVILIERNKKALSVTVLEL 146
Query: 255 AD 256
A+
Sbjct: 147 AN 148
>sp|Q03QT1|RIMP_LACBA Ribosome maturation factor RimP OS=Lactobacillus brevis (strain
ATCC 367 / JCM 1170) GN=rimP PE=3 SV=1
Length = 157
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 154 YVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDL 212
Y+ + +DK N+EE S E +K+D + IP LEVS+PGAER LK P D
Sbjct: 36 YLRLYIDKPGGINIEECALVSDEVSEKMDALDP-DPIPQAYFLEVSSPGAERPLKKPADF 94
Query: 213 GRFKEMPITVCYEDQDSDSREKTGVFL-LDSIEMDSEI 249
+ I V + +S+ G L L + +D E+
Sbjct: 95 EKAVGDYIHVSLYQKIGNSKVYEGTLLSLTADSLDLEV 132
>sp|Q03FS7|RIMP_PEDPA Ribosome maturation factor RimP OS=Pediococcus pentosaceus (strain
ATCC 25745 / 183-1w) GN=rimP PE=3 SV=1
Length = 158
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 154 YVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDL 212
++ V +DK+ N+EE S E + LD IP LEVS+PGAER LK +DL
Sbjct: 37 FLRVYIDKVGGINIEECAMVSDELSEILDAQDP-DPIPQAYFLEVSSPGAERPLKTKEDL 95
Query: 213 GR 214
R
Sbjct: 96 TR 97
>sp|Q5L0J2|RIMP_GEOKA Ribosome maturation factor RimP OS=Geobacillus kaustophilus (strain
HTA426) GN=rimP PE=3 SV=1
Length = 157
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 165 NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGR 214
++E+ + S++ +KLDEV IP + LEVS+PGAER LK D +
Sbjct: 49 DIEQCGAVSEKLSEKLDEVDP---IPHNYFLEVSSPGAERPLKKAKDFAK 95
>sp|A4QEZ5|RIMP_CORGB Ribosome maturation factor RimP OS=Corynebacterium glutamicum
(strain R) GN=rimP PE=3 SV=1
Length = 178
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 144 LYAFKATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIP--DDLALEVSTP 200
L KA P+ V +++D S ++++LE +SQE + D GE+ LEVSTP
Sbjct: 27 LKVTKAGPKSAVAIKVDSDSRPDLDQLEVFSQEIGELFDAAEQRGELNFGAGYTLEVSTP 86
Query: 201 GAERMLKVP 209
G + L +P
Sbjct: 87 GVDNPLTLP 95
>sp|Q8NP37|RIMP_CORGL Ribosome maturation factor RimP OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=rimP PE=3 SV=1
Length = 178
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 144 LYAFKATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIP--DDLALEVSTP 200
L KA P+ V +++D S ++++LE +SQE + D GE+ LEVSTP
Sbjct: 27 LKVTKAGPKSAVAIKVDSDSRPDLDQLEVFSQEIGELFDAAEQRGELNFGAGYTLEVSTP 86
Query: 201 GAERMLKVP 209
G + L +P
Sbjct: 87 GVDNPLTLP 95
>sp|B8CW69|RIMP_HALOH Ribosome maturation factor RimP OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=rimP PE=3 SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 139 GDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLDEVGALGEIPDDLALEVS 198
G++ L F P G V ++ E+ S+ +KLDEV + E LEVS
Sbjct: 32 GENRVLRVFIENPEGEV---------TLDHCENVSKNLDEKLDEVDPIQE---SYILEVS 79
Query: 199 TPGAERMLKVPDDLGRF 215
+PG ER LK +D RF
Sbjct: 80 SPGIERPLKKKEDFDRF 96
>sp|Q8YQJ5|RIMP_NOSS1 Ribosome maturation factor RimP OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rimP PE=3 SV=1
Length = 153
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 122 PWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVY---VRLDKLSNNMEELESYSQEYKK 178
P + A+ +A QLG ++ F R V +R + +++ E S+ +
Sbjct: 8 PITDLAIPVAE----QLGLEVVGIVFHTNQRPPVLRIDIRNPQQDTGLDDCERMSRALEA 63
Query: 179 KLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVF 238
LD A IPD LEVS+PG R L + FK P+ V + +E G
Sbjct: 64 ALD---ATEIIPDAYVLEVSSPGISRQLVTDREFISFKGFPVIVSTSPPHEEQQEWIGQL 120
Query: 239 L 239
+
Sbjct: 121 I 121
>sp|Q5T0U0|CC122_HUMAN Coiled-coil domain-containing protein 122 OS=Homo sapiens
GN=CCDC122 PE=1 SV=1
Length = 273
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 156 YVRLDKLSNNMEELES---YSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDL 212
Y ++ N++ E+ES + E +K D V L + ++L ++ PG R+ +V +D+
Sbjct: 129 YAKIKAHKNSLGEVESKWSFMTELHEKRDFVKKLKTMKEELMQDLQNPGGNRITQVQEDI 188
Query: 213 GRFKEMPITV--------CYEDQDSDSREK 234
K+ ITV C+ +++ + EK
Sbjct: 189 TNLKDKIITVKESIIEKTCFLEEEKKTHEK 218
>sp|Q3MBZ3|RIMP_ANAVT Ribosome maturation factor RimP OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=rimP PE=3 SV=1
Length = 153
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 122 PWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLD 181
P + A+ +A ++ L++ I + + P V +R + +++ E S+ + LD
Sbjct: 8 PITDLAIPVAEQLGLEVVG-IVFHTNQRPPVLRVDIRNPQQDTGLDDCERMSRALEAALD 66
Query: 182 EVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFL 239
A IPD LEVS+PG R L + FK P+ V +E G +
Sbjct: 67 ---ATEIIPDAYVLEVSSPGISRQLVTDREFISFKGFPVIVSTSPPHEGQQEWIGQLI 121
>sp|A5GVG1|RIMP_SYNR3 Ribosome maturation factor RimP OS=Synechococcus sp. (strain
RCC307) GN=rimP PE=3 SV=2
Length = 155
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 138 LGDDIKLYAFKATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALE 196
L + + L++ +A V VR S+ N+++ S+SQ + + L E G L + LE
Sbjct: 23 LMESVVLHSHRAPQALIVAVRKGDGSDVNLDDCASFSQAFGEAL-ETGEL--LTGAYVLE 79
Query: 197 VSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFL---LDSIEMDSEICVWK 253
+++PG +L+ D F+ P+ V D ++ G L D++E++ + +
Sbjct: 80 ITSPGLGDVLQQDRDFRSFRGFPVCVRQRDAKGGEIQREGTLLGRDADAVELNLRGRIQR 139
Query: 254 L--ADVKENR 261
+ +DV E R
Sbjct: 140 IPRSDVLEVR 149
>sp|B0JU70|RIMP_MICAN Ribosome maturation factor RimP OS=Microcystis aeruginosa (strain
NIES-843) GN=rimP PE=3 SV=1
Length = 156
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 127 ALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLDEVGAL 186
A+ IA + L++ D I K P V +R +E+ E S+ + LD L
Sbjct: 13 AIPIAENLGLEVVD-IVFQTNKRPPVLRVDIRNLAGDTGLEDCEQMSRALETALDSQEIL 71
Query: 187 GEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTG 236
P LE+S+PG R L + FK P+ V +D +E G
Sbjct: 72 ---PGAYVLEISSPGISRQLSSEREFQSFKGFPVIVTGQDSQGKPQEWRG 118
>sp|A6TRL1|RIMP_ALKMQ Ribosome maturation factor RimP OS=Alkaliphilus metalliredigens
(strain QYMF) GN=rimP PE=3 SV=1
Length = 152
Score = 34.7 bits (78), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 148 KATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERML 206
K P Y+ V +DK +++ + S+ KKLDE + E + LEVS+PG +R L
Sbjct: 30 KEGPHKYLRVYIDKPGGITLDDCQKVSEGLSKKLDEADPIVE---NYFLEVSSPGLDRPL 86
Query: 207 KVPDDLGRFK-EMPITVCYEDQDSD-SREKTGVFLLDSIEMDSEICVWKLADVKENRDPQ 264
K D +FK EM YE D + E V L+D + V K+++ +E P+
Sbjct: 87 KREVDFLKFKGEMIELKLYEAIDGQKTIEGELVGLID------DKIVIKISETEEVEMPR 140
Query: 265 EK 266
EK
Sbjct: 141 EK 142
>sp|A5GF83|RIMP_GEOUR Ribosome maturation factor RimP OS=Geobacter uraniireducens (strain
Rf4) GN=rimP PE=3 SV=1
Length = 159
Score = 34.3 bits (77), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 126 RALSIAHEVLLQLGDDIKLYAFKATPRGYVY-VRLDKLSN-NMEELESYSQEYKKKLDEV 183
R +A +V+ LG ++ +K R V + +DK N+++ S S+E + LD
Sbjct: 9 RVTVLAEQVISSLGMELVDLEYKREGREMVLRLFVDKEGGVNLDDCASVSRELSEVLDVE 68
Query: 184 GALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV-CYEDQDSDSREKTGVFLLDS 242
+ E +LEVS+PG +R LK +D RFK + + +E D+ K FL +
Sbjct: 69 DVISE---HYSLEVSSPGIDRPLKKVEDFQRFKGRLVKIRTFEPLPDDAGNKRKTFLGEL 125
Query: 243 IEMDSEICVWKLADVKENRDPQEK 266
+++ + + L + + P EK
Sbjct: 126 KGIENGVVLVALKEGQNAAIPFEK 149
>sp|B2J958|RIMP_NOSP7 Ribosome maturation factor RimP OS=Nostoc punctiforme (strain ATCC
29133 / PCC 73102) GN=rimP PE=3 SV=1
Length = 153
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 122 PWGERALSIAHEVLLQLGDDIKLYAF---KATPRGYVYVRLDKLSNNMEELESYSQEYKK 178
P + + +A V +LG ++ F ++ P V +R + + + E S+ +
Sbjct: 4 PLVPQIIDLATPVAEELGLEVVGVVFHTHQSPPVLRVDIRNPQQDTGLNDCERMSRALEA 63
Query: 179 KLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV 222
LD A +PD LEVS+PG R L + FK P+ +
Sbjct: 64 SLD---AAEIVPDTYVLEVSSPGISRQLVTDREFISFKGFPVII 104
>sp|Q1WUF8|RIMP_LACS1 Ribosome maturation factor RimP OS=Lactobacillus salivarius (strain
UCC118) GN=rimP PE=3 SV=1
Length = 157
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 154 YVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDL 212
Y+ V +DK + N+EE S + +KLD IP LEVS+PGAER LK D
Sbjct: 36 YLRVYIDKPNGINIEECALVSDKLSEKLDSCDP-DPIPQAYYLEVSSPGAERPLKKEKDY 94
Query: 213 GR 214
R
Sbjct: 95 ER 96
>sp|A8YVR1|RIMP_LACH4 Ribosome maturation factor RimP OS=Lactobacillus helveticus (strain
DPC 4571) GN=rimP PE=3 SV=1
Length = 158
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 152 RGYVYVRLDKLSN--NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVP 209
+ Y+ + +D+ N +++E+ + S+ +KLD + +PD LE+S+PGAER +K
Sbjct: 34 QNYLRIYVDRQPNGIDIDEIAALSELVSEKLDTIDP-DPLPDPYVLELSSPGAERPIKTE 92
Query: 210 DDLGR 214
D R
Sbjct: 93 ADWKR 97
>sp|B1WZP0|RIMP_CYAA5 Ribosome maturation factor RimP OS=Cyanothece sp. (strain ATCC
51142) GN=rimP PE=3 SV=1
Length = 151
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 122 PWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVY---VRLDKLSNNMEELESYSQEYKK 178
P + + +A ++ ++G D+ F+ R V +R ++ + E S+ +
Sbjct: 4 PLIPQIIDLATPIVEEMGLDVVEVVFQTNKRPPVLRVDIRNPASDTSLNDCEQVSRALEA 63
Query: 179 KLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTG 236
LDE + P LE+S+PG R L D FK + + D +E G
Sbjct: 64 VLDETAIM---PGAYVLEISSPGISRYLNSERDFIAFKGFEVNIATNPPYKDKKEWRG 118
>sp|B7GG79|RIMP_ANOFW Ribosome maturation factor RimP OS=Anoxybacillus flavithermus
(strain DSM 21510 / WK1) GN=rimP PE=3 SV=2
Length = 156
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 165 NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGR 214
++++ S++ +KLDE+ IP + LEVS+PGAER LK D R
Sbjct: 48 DIDQCGVVSEQLSEKLDEIDP---IPHNYFLEVSSPGAERPLKKARDFER 94
>sp|A4J5X6|RIMP_DESRM Ribosome maturation factor RimP OS=Desulfotomaculum reducens
(strain MI-1) GN=rimP PE=3 SV=1
Length = 153
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 154 YVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDL 212
Y+ + +DK +++ + S++ LDE+ +P LEVS+PG ER LK P D
Sbjct: 38 YLRIFIDKPGGIELDDCQGVSEKIDTLLDEIDP---VPQAYFLEVSSPGIERPLKKPQDF 94
Query: 213 GRF 215
+F
Sbjct: 95 EKF 97
>sp|A4IMD3|RIMP_GEOTN Ribosome maturation factor RimP OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=rimP PE=3 SV=2
Length = 157
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 165 NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDL 212
++E+ S++ +KLDEV IP + LEVS+PGAER LK D
Sbjct: 49 DIEQCGVVSEKLSEKLDEVDP---IPHNYFLEVSSPGAERPLKNEKDF 93
>sp|Q88VK3|RIMP_LACPL Ribosome maturation factor RimP OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=rimP PE=3 SV=1
Length = 158
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 154 YVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLK 207
Y+ + +DK N+EE S E +KLD + IP LEVS+PGAER LK
Sbjct: 37 YLRLYIDKPGGINIEECAMVSDELSEKLDAMEP-DPIPQAYFLEVSSPGAERPLK 90
>sp|A5D2U8|RIMP_PELTS Ribosome maturation factor RimP OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=rimP PE=3 SV=1
Length = 153
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 127 ALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGA 185
L + E L+L D YA K R Y+ + +DK +E+ + S++ + LDE
Sbjct: 14 TLPVVQEAGLELVD--VEYA-KEGGRYYLRIFIDKPGGVRIEDCQHVSEKIDRLLDE--- 67
Query: 186 LGEIPDDLALEVSTPGAERMLKVPDDLGRF 215
L IP LEVS+PG +R LK D RF
Sbjct: 68 LDPIPQSYFLEVSSPGIDRPLKKAGDYIRF 97
>sp|A0Q0R0|RIMP_CLONN Ribosome maturation factor RimP OS=Clostridium novyi (strain NT)
GN=rimP PE=3 SV=1
Length = 154
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 165 NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCY 224
N+E+ E S++ LDE I D LEVS+PG ER+L + L ++ I V
Sbjct: 51 NLEDCEKVSRKVSDILDEKDP---ISDSYYLEVSSPGIERVLYTEEHLHKYTNNQIIVKL 107
Query: 225 EDQDSDSREKTG 236
SRE G
Sbjct: 108 AKLFEGSREHQG 119
>sp|Q9KYR2|RIMP_STRCO Ribosome maturation factor RimP OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=rimP PE=3 SV=1
Length = 177
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 165 NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERML-------KVPDDLGRFK 216
+++ + S+ KLDE A+GE + LEV TPGAER L + D L RF+
Sbjct: 49 DLDRIADVSRALSAKLDETDAMGE--GEYTLEVGTPGAERSLTQHRHYVRATDRLVRFQ 105
>sp|Q8RHJ4|RIMP_FUSNN Ribosome maturation factor RimP OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=rimP PE=3 SV=1
Length = 156
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 153 GYVYVRL--DKLSN--NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKV 208
GY YVR+ + L+ N+E+ S + + K++E+ I LEVS+PG ER LK
Sbjct: 36 GYWYVRIFIENLNGDLNIEDCSKLSSKIEDKVEEL-----IEHKFFLEVSSPGLERPLKK 90
Query: 209 PDDLGRFKEMPITVCYEDQDSDSRE 233
+D RF IT+ + + D ++
Sbjct: 91 LEDYTRFIGEKITLHLKHKLDDKKQ 115
>sp|Q7U8L5|RIMP_SYNPX Ribosome maturation factor RimP OS=Synechococcus sp. (strain
WH8102) GN=rimP PE=3 SV=2
Length = 155
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 158 RLDKLSNNMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKE 217
R + + NM++ +S + L+ L E LE+S+PG L D F+
Sbjct: 44 RSNGVDVNMDDCAGFSGTLGEALESAQLLTEA---YVLEISSPGIGETLSSDRDFQTFRG 100
Query: 218 MPITVCYEDQDSDSREKTGVFL 239
P+ V + D+D + G+ L
Sbjct: 101 FPVEVVHRDRDDTEQRLEGLLL 122
>sp|A8C756|THADA_MOUSE Thyroid adenoma-associated protein homolog OS=Mus musculus GN=Thada
PE=2 SV=1
Length = 1938
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 157 VRLDKLSNNMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGA-ERMLKVPDDLGRF 215
VRL L +E S QE K+ L + ++GE LA++ PG R+LK+ L
Sbjct: 1548 VRLLALDTLLERARSSEQEQKEPLPLLCSMGEELLLLAMKEDHPGCFCRVLKILYHLNPS 1607
Query: 216 KEMPITVCY-------------EDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRD 262
+ +P T CY + +D E GV ++++ S+I +++ ++N+D
Sbjct: 1608 EWLPQTECYAHLSPKEFLMWSMDIASNDRSEIQGV----ALKLASKIIAYRVQSCEKNKD 1663
>sp|B1XI06|RIMP_SYNP2 Ribosome maturation factor RimP OS=Synechococcus sp. (strain ATCC
27264 / PCC 7002 / PR-6) GN=rimP PE=3 SV=2
Length = 153
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 122 PWGERALSIAHEVLLQLGDDIKLYAF---KATPRGYVYVRLDKLSNNMEELESYSQEYKK 178
P R ++ A + +LG ++ F K P + VR +E+ E +S+
Sbjct: 4 PLIPRIVTCAEPIAAELGLEVVDVVFQTNKKPPVLRIDVRNLSQDTGLEDCERFSRLLDP 63
Query: 179 KLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVF 238
+L+ A IP LEVS+PG +R L + F+ P+ V D +E G
Sbjct: 64 QLE---AQEIIPGAYVLEVSSPGTDRNLTTDREFIAFRGFPVRVKTYAPYKDQKEWCGTL 120
>sp|A0AIC2|RIMP_LISW6 Ribosome maturation factor RimP OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rimP PE=3
SV=1
Length = 155
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 130 IAHEVLLQLGDDIKLYAF-KATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALG 187
I +E+ L+L D AF K P ++ + +DK +++E + S++ +K+DE +
Sbjct: 15 ITNELQLELVD----IAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDESDPIT 70
Query: 188 EIPDDLALEVSTPGAERMLKVPDDL 212
+ + LEVS+PGAER LK D
Sbjct: 71 Q---NYFLEVSSPGAERPLKKEQDF 92
>sp|Q9VS46|RINT1_DROME RINT1-like protein OS=Drosophila melanogaster GN=CG8605 PE=2 SV=2
Length = 724
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 152 RGYVYVRLDKLSNNMEELESYSQEYKKKLDEVGAL-GEIPDDLALEVSTPGAERMLKVPD 210
RG V + ++KL+ ++E++ + LDE A E+ + S P A ++ P
Sbjct: 328 RGLVQLAIEKLAVDIEQIAQDQILFAHLLDETLAFESELRETFGYPASFPSAISVITQPM 387
Query: 211 DLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLAD 256
L R+ + C E D + +T L+D ++++ + K AD
Sbjct: 388 YLLRWISLEERFCAEKMDDILQAETPFQLIDPNSFENDLKIPKCAD 433
>sp|Q01W33|RIMP_SOLUE Ribosome maturation factor RimP OS=Solibacter usitatus (strain
Ellin6076) GN=rimP PE=3 SV=2
Length = 153
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 125 ERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLDEVG 184
E S EV ++ L + +G RL ++S + E +++ + + D+VG
Sbjct: 3 EAVTSKVEEVAQRVAQSEGLELVEVEVKGGGSARLVRISIDKPEGVTHA-DCQTVSDKVG 61
Query: 185 ALGE----IPDDLALEVSTPGAERMLKVPDDLGRF--KEMPITV 222
+ E IP LEVS+PG ER L P D RF ++ ITV
Sbjct: 62 EILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRFHGQKAKITV 105
>sp|B3EAE4|RIMP_GEOLS Ribosome maturation factor RimP OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=rimP PE=3 SV=1
Length = 159
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 125 ERALSIAHEVLLQLGDDIKLYAFKATPRGYVY-VRLDKLSN-NMEELESYSQEYKKKLDE 182
+R ++ +L +G ++ FK R Y+ V +DK N+++ S+E +LD
Sbjct: 8 QRVETLLQPILDAMGLELVELEFKKVGRSYLLRVFIDKPDGVNLDDCAEVSRELSVQLDV 67
Query: 183 VGALGEIPDDLALEVSTPGAERMLKVPDDL----GRFKEMPITVCYEDQDSDSREKTGVF 238
I LEVS+PG +R LK D GR + T +D+ R KT +
Sbjct: 68 EDC---IASRYTLEVSSPGLDRPLKKEQDFIRYQGRLAVVKTTELLKDEKGSPR-KTFLG 123
Query: 239 LLDSIEMDSEICVWKLADVKENRDPQEK 266
L+ +E D E+ + +L + + R P +K
Sbjct: 124 FLEGVE-DGEVMI-RLKEGPQARIPWDK 149
>sp|Q82K50|RIMP_STRAW Ribosome maturation factor RimP OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=rimP PE=3 SV=1
Length = 169
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 165 NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERML-------KVPDDLGRFK 216
+++ + S+ KLDE A+GE + LEV TPGAER L + D L RF+
Sbjct: 49 DLDAIADVSRALSAKLDETDAMGE--GEYTLEVGTPGAERALTEHRHYVRAVDRLVRFQ 105
>sp|Q0I7K5|RIMP_SYNS3 Ribosome maturation factor RimP OS=Synechococcus sp. (strain
CC9311) GN=rimP PE=3 SV=1
Length = 157
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 165 NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCY 224
+++ ++S + L+ L E LE+S+PG L+ D F+ P+ V +
Sbjct: 53 TLDDCAAFSAPMGEALENSAVLNEA---YVLEISSPGIGDHLQSDRDFQTFRRYPVDVIH 109
Query: 225 EDQDSDSREKTGVFL 239
D D ++ +G L
Sbjct: 110 RDPDGAEQKHSGTLL 124
>sp|A9BCI2|RIMP_PROM4 Ribosome maturation factor RimP OS=Prochlorococcus marinus (strain
MIT 9211) GN=rimP PE=3 SV=2
Length = 155
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 195 LEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVF 238
LE+S+PG +L+ D FK PI V +++ ++ K+G+
Sbjct: 78 LEISSPGLGDLLQTDKDFKTFKGFPIEVLFKNNENTKLTKSGLL 121
>sp|Q5WFT8|RIMP_BACSK Ribosome maturation factor RimP OS=Bacillus clausii (strain
KSM-K16) GN=rimP PE=3 SV=1
Length = 156
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 148 KATPRGYVYVRLDK-LSNNMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERML 206
K P Y+ V +D N+++ E+ S++ + LDEV + E LEVS+PGAER L
Sbjct: 31 KEGPNWYLRVFIDADRGVNLDDCEAVSEKLSEVLDEVDPIKEA---YFLEVSSPGAERPL 87
Query: 207 KVPDDLGR 214
K D+ +
Sbjct: 88 KKEADVKK 95
>sp|Q2RMS3|RIMP_RHORT Ribosome maturation factor RimP OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=rimP PE=3 SV=1
Length = 225
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 158 RLDKLSNNMEELESYSQEYKKKLDEVGALGEIPDDLA----LEVSTPGAERMLKVPDDLG 213
RLD ++ + + E+ S+ +GAL ++ D +A LE+S+PG +R L P D
Sbjct: 76 RLDGVAMTVSDCETISRA-------LGALLDVEDPIAGRYSLEISSPGIDRPLTRPKDYA 128
Query: 214 RF 215
RF
Sbjct: 129 RF 130
>sp|Q47RV4|RIMP_THEFY Ribosome maturation factor RimP OS=Thermobifida fusca (strain YX)
GN=rimP PE=3 SV=1
Length = 157
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 166 MEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDD----LGRFKEMPIT 221
+E + SQ+ LDEV +G+ P LEV++PG +R L P GR P+
Sbjct: 51 LERIGEVSQKISTALDEVDVMGQSP--YVLEVTSPGVDRPLTEPRHWRRARGRLVHAPLV 108
Query: 222 VCYEDQ----DSDSREKTGVFLLDSIEMDSEICVWKLADVKENR 261
+ + D+D +TGV + ++D + V+ +D+ +
Sbjct: 109 AGGQVKGRVIDAD---ETGV----TFDVDGQSQVYAFSDLGRGK 145
>sp|Q92C33|RIMP_LISIN Ribosome maturation factor RimP OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=rimP PE=3 SV=1
Length = 155
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 130 IAHEVLLQLGDDIKLYAF-KATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALG 187
I E+ L+L D AF K P ++ + +DK +++E + S++ +K+DE +
Sbjct: 15 ITDELQLELVD----IAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDESDPIT 70
Query: 188 EIPDDLALEVSTPGAERMLKVPDDL 212
+ + LEVS+PGAER LK D
Sbjct: 71 Q---NYFLEVSSPGAERPLKKEQDF 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,586,196
Number of Sequences: 539616
Number of extensions: 5369497
Number of successful extensions: 19779
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 19693
Number of HSP's gapped (non-prelim): 196
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)