Query 022576
Match_columns 295
No_of_seqs 172 out of 1234
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ib8_A Conserved protein SP14. 100.0 7E-40 2.4E-44 284.2 17.2 159 113-295 1-162 (164)
2 1y96_A Gemin6, SIP2, GEM-assoc 78.3 3.2 0.00011 32.3 5.0 65 207-292 7-71 (86)
3 3pgw_B SM B; protein-RNA compl 78.1 6.3 0.00021 35.8 7.6 46 207-261 4-49 (231)
4 1ycy_A Conserved hypothetical 75.9 8.8 0.0003 28.6 6.5 62 209-291 8-69 (71)
5 1d3b_B Protein (small nuclear 68.4 4.5 0.00015 30.6 3.6 43 208-259 5-47 (91)
6 4emk_C U6 snRNA-associated SM- 66.3 6.8 0.00023 31.5 4.4 51 202-261 17-68 (113)
7 3byp_A CZRB protein; membrane 62.3 31 0.0011 25.3 7.3 80 125-209 13-94 (94)
8 3s6n_G Small nuclear ribonucle 56.2 9.2 0.00032 28.1 3.3 43 209-260 6-48 (76)
9 1i4k_A Putative snRNP SM-like 55.0 14 0.00047 27.0 4.1 42 210-260 7-48 (77)
10 4emk_B U6 snRNA-associated SM- 54.7 12 0.00042 27.3 3.7 42 210-260 7-48 (75)
11 1h64_1 SnRNP SM-like protein; 54.5 14 0.00047 26.9 4.0 42 210-260 7-48 (75)
12 1d3b_A Protein (small nuclear 53.8 15 0.00052 26.9 4.2 40 212-260 10-49 (75)
13 3bw1_A SMX4 protein, U6 snRNA- 52.5 15 0.00052 28.3 4.1 42 210-260 13-54 (96)
14 1ljo_A Archaeal SM-like protei 51.0 22 0.00075 26.0 4.6 43 209-260 7-50 (77)
15 1th7_A SnRNP-2, small nuclear 50.4 17 0.00058 26.9 4.0 42 210-260 12-53 (81)
16 1mgq_A SM-like protein; LSM, R 49.9 24 0.00082 26.3 4.8 43 209-260 17-59 (83)
17 3s6n_F Small nuclear ribonucle 47.7 24 0.00081 26.7 4.5 43 209-260 8-50 (86)
18 4emh_A Probable U6 snRNA-assoc 41.7 23 0.00078 28.1 3.6 40 212-260 21-60 (105)
19 1i8f_A Putative snRNP SM-like 40.6 24 0.00081 26.1 3.4 41 210-259 14-54 (81)
20 4emk_A U6 snRNA-associated SM- 40.4 28 0.00095 27.0 3.9 46 206-260 18-64 (94)
21 1n9r_A SMF, small nuclear ribo 37.7 25 0.00086 27.0 3.2 43 210-260 24-66 (93)
22 2rm4_A CG6311-PB, DM EDC3; enh 36.7 94 0.0032 24.8 6.4 62 214-292 9-70 (103)
23 4a53_A EDC3; RNA binding prote 36.0 86 0.0029 25.9 6.3 32 213-250 8-39 (125)
24 1b34_A Protein (small nuclear 35.8 52 0.0018 26.3 5.0 42 210-260 5-46 (119)
25 1wwj_A Circadian clock protein 32.8 45 0.0015 26.7 4.1 41 152-201 7-48 (105)
26 4emg_A Probable U6 snRNA-assoc 31.7 49 0.0017 25.3 4.0 48 201-261 6-54 (93)
27 3fb9_A Uncharacterized protein 30.5 1E+02 0.0035 24.0 5.6 70 209-295 17-88 (90)
28 1m5q_A SMAP3, small nuclear ri 29.2 62 0.0021 26.5 4.4 41 210-259 3-43 (130)
29 2y9a_D Small nuclear ribonucle 28.8 54 0.0018 26.7 4.0 41 210-259 8-48 (126)
30 2fwk_A U6 snRNA-associated SM- 28.5 34 0.0011 27.4 2.7 42 211-261 32-73 (121)
31 2fao_A Probable ATP-dependent 28.0 1.2E+02 0.0042 28.4 6.7 83 120-224 144-229 (309)
32 3dex_A SAV_2001; alpha-beta pr 27.7 80 0.0027 25.3 4.7 61 121-181 23-89 (107)
33 2e6z_A Transcription elongatio 24.0 1.2E+02 0.0042 21.1 4.7 50 215-288 9-58 (59)
34 3t7a_A Inositol pyrophosphate 23.7 2.1E+02 0.0071 27.2 7.5 65 111-176 239-309 (330)
35 2nyi_A Unknown protein; protei 22.1 2.1E+02 0.0073 23.8 6.7 55 127-181 18-74 (195)
36 2p0a_A Synapsin-3, synapsin II 20.2 2.7E+02 0.0093 26.0 7.6 63 119-181 251-321 (344)
No 1
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=100.00 E-value=7e-40 Score=284.24 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=136.2
Q ss_pred CCceeecCCCHHHHHHHHHHHHHhhcCCeEEEEEE-eeCCCcEEEEEEeCCCC-ChhhHHHHHHHHHHhhhccccCCCCC
Q 022576 113 GGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAF-KATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIP 190 (295)
Q Consensus 113 g~~i~~~~~~~~ekI~el~epvle~~G~eLvdVe~-k~~~~~~LrV~IDk~~G-sIDDCe~vSR~Is~~LD~~e~~d~I~ 190 (295)
|.|+..+ ....++|+++++|++++ ||+||+|++ +.+++++|||+||+++| ++|||+++||+|++.||+. ++|+|+
T Consensus 1 ~~~~~mm-~~~~~~v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD~~-~~d~i~ 77 (164)
T 1ib8_A 1 GSGVDAI-ATIVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDTI-KPDPFP 77 (164)
T ss_dssp CCSCCHH-HHHHHHHHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTTTC-CSCCCC
T ss_pred CchhHHH-HHHHHHHHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc-cccCCC
Confidence 3455544 34678999999999999 999999999 77788999999999999 9999999999999999942 368999
Q ss_pred CCeEEEEecCCCCCCCCChHHHhhcCCCeeEEEE-eecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccCCCCCCCcc
Q 022576 191 DDLALEVSTPGAERMLKVPDDLGRFKEMPITVCY-EDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRP 269 (295)
Q Consensus 191 ~~Y~LEVSSPGiERpLk~~~df~RfiGr~V~V~l-~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr~~~~KGr~ 269 (295)
++|+|||||||++|||++++||+||+|+.|+|++ .+++|+++ ++|+| .+++++.+++.+. .|++.
T Consensus 78 ~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~-~~G~L--~~~~~~~v~l~~~-----------~k~~~ 143 (164)
T 1ib8_A 78 EQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKV-FEGTL--LAFEEDELTMEYM-----------DKTRK 143 (164)
T ss_dssp SCEEEEEECCSSSSCCSSHHHHHHHCSEEEEEECSSCSSSCSE-EEEEE--EEEETTEEEEEEE-----------CSSCE
T ss_pred CCeEEEEeCCCCCCCCCCHHHHHHhCCcEEEEEEecccCCceE-EEEEE--EEEeCCEEEEEEe-----------cccCC
Confidence 9999999999999999999999999999999999 77888754 68987 8999998855543 11110
Q ss_pred ccccccceeEEeeccCcceeEEEEeC
Q 022576 270 LSRKRRDWRLNLPFVMHKRVTLYLEY 295 (295)
Q Consensus 270 l~kKq~e~~v~Ipf~~IkkArL~iEF 295 (295)
..++|||++|++|||.++|
T Consensus 144 -------~~~~i~~~~I~ka~l~~ef 162 (164)
T 1ib8_A 144 -------KTVQIPYSLVSKARLAVKL 162 (164)
T ss_dssp -------EEEEECSSCCSSCEEECSC
T ss_pred -------eEEEEEHHHCcEEEEEEEe
Confidence 1378999999999999998
No 2
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=78.25 E-value=3.2 Score=32.28 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=45.2
Q ss_pred CChHHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccCCCCCCCccccccccceeEEeeccCc
Q 022576 207 KVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMH 286 (295)
Q Consensus 207 k~~~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr~~~~KGr~l~kKq~e~~v~Ipf~~I 286 (295)
++|.+|..++|+.|+|++. +|+ ..+|.+ ..+|..+..+++ .+.. .+++. .++-|+-..|
T Consensus 7 ~~p~el~~li~KeV~V~l~--dg~--~y~G~l--~tvDp~s~sIvL--~n~~------~~~~~-------~~~iI~G~aI 65 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTAS--EKN--EYKGWV--LTTDPVSANIVL--VNFL------EDGSM-------SVTGIMGHAV 65 (86)
T ss_dssp SCHHHHHHTTTCEEEEEET--TTE--EEEEEE--EEECTTTCCEEE--EEEC------TTSCE-------EEEEECGGGE
T ss_pred CCHHHHHhhcCCEEEEEEc--CCC--EEEEEE--EEECCCceEEEE--eecc------cCCeE-------EEEEEecceE
Confidence 4688999999999999994 665 568998 789987776664 3431 12221 1356777777
Q ss_pred ceeEEE
Q 022576 287 KRVTLY 292 (295)
Q Consensus 287 kkArL~ 292 (295)
+.+.+.
T Consensus 66 ~eI~v~ 71 (86)
T 1y96_A 66 QTVETM 71 (86)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777664
No 3
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=78.11 E-value=6.3 Score=35.79 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=34.6
Q ss_pred CChHHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccC
Q 022576 207 KVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENR 261 (295)
Q Consensus 207 k~~~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr 261 (295)
.+...+.+|++++|+|+++ +|+ ++.|+| .++|.. . -+.|.|+.+-+
T Consensus 4 ~k~~kL~klIdKrV~V~Lk--dGR--el~GtL--kgFDq~-M--NLVL~Da~E~~ 49 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQ--DGR--IFIGTF--KAFDKH-M--NLILCDCDEFR 49 (231)
T ss_pred CchHHHHHhcCCeEEEEEC--CCc--EEEEEE--EEEccc-c--cEEecCEEEEE
Confidence 4567899999999999996 676 568998 788864 2 34467777654
No 4
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=75.90 E-value=8.8 Score=28.63 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=38.0
Q ss_pred hHHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccCCCCCCCccccccccceeEEeeccCcce
Q 022576 209 PDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKR 288 (295)
Q Consensus 209 ~~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr~~~~KGr~l~kKq~e~~v~Ipf~~Ikk 288 (295)
.+-+.+.+|++|.|.. .|. ..++|+| .++|++.+-+. .+.|+..| |||. +-+..++|.-
T Consensus 8 dktL~~WKg~rvAv~v---g~e-hSFtGil--edFDeEviLL~-dV~D~~GN-----k~k~---------liv~idDinW 66 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSV---GGD-HSFTGTL--EDFDEEVILLK-DVVDVIGN-----RGKQ---------MLIGLEDINW 66 (71)
T ss_dssp HHHHHHHTTSEEEEEE---C-----CEEEE--EEECSSEEEEE-EEEETTEE-----EEEE---------EEEEGGGEEE
T ss_pred HHHHHHhCCcEEEEEe---cCc-ceeeeeh--hhcCcceeehh-hHHHHhcc-----ccce---------eEEEeccceE
Confidence 3557899999999976 343 4579998 89999865222 12333332 4442 6677777776
Q ss_pred eEE
Q 022576 289 VTL 291 (295)
Q Consensus 289 ArL 291 (295)
+.|
T Consensus 67 imL 69 (71)
T 1ycy_A 67 IML 69 (71)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 5
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=68.42 E-value=4.5 Score=30.65 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=30.5
Q ss_pred ChHHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccc
Q 022576 208 VPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 259 (295)
Q Consensus 208 ~~~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~ 259 (295)
....+.+++|++|.|+++ +|+ .+.|+| .++|..- .++ |.|+.+
T Consensus 5 ~~~~L~~~~~k~V~V~l~--~gr--~~~G~L--~~~D~~m-Nlv--L~d~~E 47 (91)
T 1d3b_B 5 KSSKMLQHIDYRMRCILQ--DGR--IFIGTF--KAFDKHM-NLI--LCDCDE 47 (91)
T ss_dssp --CCCGGGTTSEEEEEET--TCC--EEEEEE--EECCTTC-CEE--EEEEEE
T ss_pred hhHHHHHHcCCcEEEEEC--CCe--EEEEEE--EEECCCC-eEE--ecCEEE
Confidence 345678999999999996 676 578998 7888653 233 556655
No 6
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=66.27 E-value=6.8 Score=31.46 Aligned_cols=51 Identities=27% Similarity=0.362 Sum_probs=27.0
Q ss_pred CCCCCCC-hHHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccC
Q 022576 202 AERMLKV-PDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENR 261 (295)
Q Consensus 202 iERpLk~-~~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr 261 (295)
-++|-+. ..++.+++|+.|.|++. +|+ .+.|+| .++|..- .++ |.|+.+-+
T Consensus 17 ~~~~kke~i~~L~~~l~k~V~V~L~--dGr--~~~G~L--~~fD~~m-NLV--L~d~~E~~ 68 (113)
T 4emk_C 17 TERPRKESILDLSRYQDQRIQATFT--GGR--QITGIL--KGFDQLM-NLV--LDDVEEQL 68 (113)
T ss_dssp ---------------CCSEEEEEET--TSC--EEEEEE--EEECTTC-CEE--EEEEEEEC
T ss_pred ccCCccchHHHHHHHcCCcEEEEEe--CCe--EEEEEE--EEEcCcc-cEE--EeeEEEEE
Confidence 4566554 37889999999999996 676 568998 7888753 333 56766643
No 7
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=62.28 E-value=31 Score=25.29 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEE-eeCCCcEEEEEEeCCCC-ChhhHHHHHHHHHHhhhccccCCCCCCCeEEEEecCCC
Q 022576 125 ERALSIAHEVLLQLGDDIKLYAF-KATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGA 202 (295)
Q Consensus 125 ekI~el~epvle~~G~eLvdVe~-k~~~~~~LrV~IDk~~G-sIDDCe~vSR~Is~~LD~~e~~d~I~~~Y~LEVSSPGi 202 (295)
++|.+++..++...-..+.++.. +.++...+.+-|.-+.+ ++.+..++...+...|-+ .-++. .-++++- |..
T Consensus 13 ~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~---~~~~~-~vtIh~e-p~~ 87 (94)
T 3byp_A 13 ERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQ---AFPGL-QATIHVE-PEG 87 (94)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHH---HSTTE-EEEEEEE-ECC
T ss_pred HHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHH---HCCCC-EEEEEeC-CCC
Confidence 34445544432122356788877 54544455555554455 888888899999888853 11222 4566666 466
Q ss_pred CCCCCCh
Q 022576 203 ERMLKVP 209 (295)
Q Consensus 203 ERpLk~~ 209 (295)
.++|++|
T Consensus 88 ~~~~~~~ 94 (94)
T 3byp_A 88 ERKRTNP 94 (94)
T ss_dssp -------
T ss_pred ccccCCC
Confidence 6777654
No 8
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=56.22 E-value=9.2 Score=28.13 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=25.4
Q ss_pred hHHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 209 PDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 209 ~~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
...+..++|++|.|+++ +|+ .+.|+| .++|.. ..++ |.|+.+-
T Consensus 6 ~~~L~~~~~k~V~V~Lk--~gr--~~~G~L--~~~D~~-mNlv--L~~~~e~ 48 (76)
T 3s6n_G 6 PPELKKFMDKKLSLKLN--GGR--HVQGIL--RGFDPF-MNLV--IDECVEM 48 (76)
T ss_dssp --------CCEEEEEET--TTE--EEEEEE--EEECTT-CCEE--EEEEEEC
T ss_pred hHHHHHhCCCeEEEEEC--CCc--EEEEEE--EEECCc-ceEE--EeceEEE
Confidence 45688999999999996 675 578998 888864 3333 5676654
No 9
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=54.98 E-value=14 Score=26.97 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=30.5
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 210 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 210 ~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
.-+.+++|++|.|+++ +|+ .+.|+| .++|..- .++ |.|+.+-
T Consensus 7 ~~L~~~~~~~V~V~L~--~g~--~~~G~L--~~~D~~m-Nlv--L~d~~e~ 48 (77)
T 1i4k_A 7 DVLNRSLKSPVIVRLK--GGR--EFRGTL--DGYDIHM-NLV--LLDAEEI 48 (77)
T ss_dssp HHHHTTTTSEEEEEET--TSC--EEEEEE--EEECTTC-CEE--EEEEEEE
T ss_pred HHHHHhCCCEEEEEEc--CCC--EEEEEE--EEEcCCC-CeE--EeeEEEE
Confidence 4577899999999996 676 568988 7888653 333 5566654
No 10
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=54.71 E-value=12 Score=27.33 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=30.4
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 210 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 210 ~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
.-+..++|++|.|+++ +|+ .+.|+| .++|.- ..++ |.|+.+-
T Consensus 7 ~~L~~~~~k~V~V~Lk--~g~--~~~G~L--~~~D~~-mNlv--L~d~~e~ 48 (75)
T 4emk_B 7 EFLNKVIGKKVLIRLS--SGV--DYKGIL--SCLDGY-MNLA--LERTEEY 48 (75)
T ss_dssp HHHHHTTTSEEEEECT--TSC--EEEEEE--EEECTT-CEEE--EEEEEEE
T ss_pred HHHHHhCCCeEEEEEc--CCc--EEEEEE--EEEcCc-ceEE--EccEEEE
Confidence 4567899999999996 676 578998 888864 3334 5666553
No 11
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=54.51 E-value=14 Score=26.90 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=30.4
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 210 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 210 ~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
.-+.+++|++|.|+++ +|+ .+.|+| .++|..- .++ |.|+.+-
T Consensus 7 ~~L~~~~~~~V~V~l~--~g~--~~~G~L--~~~D~~m-Nlv--L~d~~e~ 48 (75)
T 1h64_1 7 DVIHRSLDKDVLVILK--KGF--EFRGRL--IGYDIHL-NVV--LADAEMI 48 (75)
T ss_dssp HHHHTTTTSEEEEEET--TSE--EEEEEE--EEECTTC-CEE--EEEEEEE
T ss_pred HHHHHHCCCEEEEEEC--CCC--EEEEEE--EEEeCCC-CeE--EeeEEEE
Confidence 4577899999999996 665 578988 7888653 333 5566554
No 12
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=53.84 E-value=15 Score=26.94 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=29.0
Q ss_pred HhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 212 LGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 212 f~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
+..+.|++|.|+++ +|+ .+.|+| .++|+- ..++ |.|+.+-
T Consensus 10 L~~~~g~~V~VeLk--~g~--~~~G~L--~~~D~~-MNl~--L~~~~e~ 49 (75)
T 1d3b_A 10 LHEAEGHIVTCETN--TGE--VYRGKL--IEAEDN-MNCQ--MSNITVT 49 (75)
T ss_dssp HHHTTTSEEEEEET--TSC--EEEEEE--EEECTT-CCEE--EEEEEEE
T ss_pred HHHhCCCEEEEEEC--CCc--EEEEEE--EEEccc-eeEE--EEeEEEE
Confidence 46789999999996 666 578988 888864 3334 5566553
No 13
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=52.54 E-value=15 Score=28.30 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=30.4
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 210 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 210 ~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
..+..++|++|.|+++ +|+ .+.|+| .++|.-- .++ |.|+.+-
T Consensus 13 ~~L~~~i~k~V~V~Lk--~gr--~~~G~L--~~fD~~m-NlV--L~d~~E~ 54 (96)
T 3bw1_A 13 DLLKLNLDERVYIKLR--GAR--TLVGTL--QAFDSHC-NIV--LSDAVET 54 (96)
T ss_dssp HHHGGGTTSEEEEEEG--GGC--EEEEEE--EEECTTC-CEE--EEEEEEE
T ss_pred HHHHHHCCCeEEEEEC--CCc--EEEEEE--EEECCCC-cEE--EcCEEEE
Confidence 4578899999999996 576 578988 7888653 233 5566554
No 14
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=51.04 E-value=22 Score=25.96 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=31.4
Q ss_pred hHHHhhcCCCeeEEEEeecCC-CeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 209 PDDLGRFKEMPITVCYEDQDS-DSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 209 ~~df~RfiGr~V~V~l~~~eG-~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
...+.+++|++|.|+++ +| + .+.|+| .++|.- ..++ |.|+.+-
T Consensus 7 ~~~L~~~~~~~v~V~lk--~g~~--~~~G~L--~~~D~~-mNlv--L~d~~e~ 50 (77)
T 1ljo_A 7 NQMVKSMVGKIIRVEMK--GEEN--QLVGKL--EGVDDY-MNLY--LTNAMEC 50 (77)
T ss_dssp HHHHHHTTTSEEEEEET--TCSS--EEEEEE--EEECTT-CCEE--EEEEEEE
T ss_pred HHHHHHHCCCEEEEEEe--CCCE--EEEEEE--EEECCc-ceEE--EeeEEEE
Confidence 45678999999999995 67 5 578988 888864 3333 5666654
No 15
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=50.44 E-value=17 Score=26.86 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=30.9
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 210 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 210 ~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
..+.+++|++|.|+++ +|+ .+.|+| .++|..- .++ |.|+.+-
T Consensus 12 ~~L~~~~~~~V~V~l~--~g~--~~~G~L--~~~D~~m-Nlv--L~d~~e~ 53 (81)
T 1th7_A 12 KVLAESLNNLVLVKLK--GNK--EVRGML--RSYDQHM-NLV--LSDSEEI 53 (81)
T ss_dssp HHHHHHTTSEEEEEET--TTE--EEEEEE--EEECTTC-CEE--EEEEEEE
T ss_pred HHHHHhCCCeEEEEEc--CCc--EEEEEE--EEEcCCC-CEE--EccEEEE
Confidence 4678899999999996 675 578988 7888653 333 5676664
No 16
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=49.88 E-value=24 Score=26.26 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=31.4
Q ss_pred hHHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 209 PDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 209 ~~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
...+.+++|++|.|++. +|+ .+.|+| .++|..- .++ |.|+.+-
T Consensus 17 ~~~L~~~~~~~V~V~Lk--~g~--~~~G~L--~~~D~~m-Nlv--L~d~~e~ 59 (83)
T 1mgq_A 17 LDALGNSLNSPVIIKLK--GDR--EFRGVL--KSFDLHM-NLV--LNDAEEL 59 (83)
T ss_dssp THHHHHTTTSEEEEEET--TTE--EEEEEE--EEECTTC-CEE--EEEEEEE
T ss_pred HHHHHHhCCCEEEEEEc--CCc--EEEEEE--EEECCCc-eeE--EccEEEE
Confidence 45788899999999996 565 578988 7888653 333 5566654
No 17
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=47.69 E-value=24 Score=26.66 Aligned_cols=43 Identities=21% Similarity=0.113 Sum_probs=30.8
Q ss_pred hHHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 209 PDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 209 ~~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
..-+..++|++|.|+++ +|+ .+.|+| .++|.- ..++ |.|+.+.
T Consensus 8 ~~~L~~~~~k~V~V~Lk--~g~--~~~G~L--~~~D~~-mNlv--L~d~~e~ 50 (86)
T 3s6n_F 8 KPFLNGLTGKPVMVKLK--WGM--EYKGYL--VSVDGY-MNMQ--LANTEEY 50 (86)
T ss_dssp HHHHHHHTTSEEEEEET--TSC--EEEEEE--EEECTT-CCEE--EEEEEEE
T ss_pred HHHHHHhCCCeEEEEEc--CCe--EEEEEE--EEEcCc-eEEE--EeeEEEE
Confidence 34567899999999996 676 568988 888874 3333 5666643
No 18
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=41.70 E-value=23 Score=28.05 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=25.1
Q ss_pred HhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 212 LGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 212 f~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
+..++|++|.|++. +|+ .+.|+| .++|.- ..++ |.|+.+.
T Consensus 21 L~~~igk~V~V~Lk--~G~--~~~G~L--~~~D~~-MNlv--L~d~~e~ 60 (105)
T 4emh_A 21 LNATQGRPILVELK--NGE--TFNGHL--ENCDNY-MNLT--LREVIRT 60 (105)
T ss_dssp -----CCEEEEEET--TSC--EEEEEE--EEECTT-CCEE--EEEEEEE
T ss_pred HHHhCCCEEEEEEC--CCC--EEEEEE--EEEcCC-ceEE--EEEEEEE
Confidence 56789999999996 575 578998 788864 3334 5676653
No 19
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=40.56 E-value=24 Score=26.10 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=29.7
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccc
Q 022576 210 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 259 (295)
Q Consensus 210 ~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~ 259 (295)
..+.+++|++|.|++. +|+ .+.|+| .++|..- .++ |.|+.+
T Consensus 14 ~~L~~~~~~~V~V~l~--~g~--~~~G~L--~~~D~~m-Nlv--L~d~~e 54 (81)
T 1i8f_A 14 ATLQDSIGKQVLVKLR--DSH--EIRGIL--RSFDQHV-NLL--LEDAEE 54 (81)
T ss_dssp HHHHTTTTSEEEEEEG--GGE--EEEEEE--EEECTTC-CEE--EEEEEE
T ss_pred HHHHHHCCCeEEEEEc--CCc--EEEEEE--EEEcCCC-eeE--EccEEE
Confidence 4567899999999996 565 578988 7888653 333 556655
No 20
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=40.36 E-value=28 Score=27.01 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCChHH-HhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 206 LKVPDD-LGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 206 Lk~~~d-f~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
...|-. +.+++|++|.|+++ +|+ .+.|+| .++|.- ..++ |.|+.+-
T Consensus 18 ~~~Pl~lL~~~l~k~V~V~Lk--~gr--~~~G~L--~gfD~~-mNlv--L~d~~E~ 64 (94)
T 4emk_A 18 TILPLELIDKCIGSNLWVIMK--SER--EFAGTL--VGFDDY-VNIV--LKDVTEY 64 (94)
T ss_dssp --CHHHHHHHTTTSEEEEEES--SSE--EEEEEE--EEECTT-CCEE--EEEEEEE
T ss_pred cccCHHHHHHHcCCeEEEEEC--CCc--EEEEEE--EEEccc-CCeE--eeeEEEE
Confidence 344443 47899999999996 565 578998 788864 3334 5666554
No 21
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=37.71 E-value=25 Score=27.05 Aligned_cols=43 Identities=19% Similarity=0.023 Sum_probs=29.0
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 210 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 210 ~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
.-+..++|++|.|++. +| .+.+.|+| .++|+- ..++ |.|+.+-
T Consensus 24 ~~L~~~i~k~V~V~Lk--~g-~~~~~G~L--~~~D~~-MNlv--L~d~~E~ 66 (93)
T 1n9r_A 24 PFLKGLVNHRVGVKLK--FN-STEYRGTL--VSTDNY-FNLQ--LNEAEEF 66 (93)
T ss_dssp --CGGGTTSEEEEEES--ST-TEEEEEEE--EECCTT-TCEE--EEEEEEE
T ss_pred HHHHHhCCCEEEEEEc--CC-CEEEEEEE--EEEccc-cEEE--EeeEEEE
Confidence 4567789999999996 67 23578988 788864 3333 5566553
No 22
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=36.67 E-value=94 Score=24.77 Aligned_cols=62 Identities=13% Similarity=0.255 Sum_probs=42.0
Q ss_pred hcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccCCCCCCCccccccccceeEEeeccCcceeEEE
Q 022576 214 RFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLY 292 (295)
Q Consensus 214 RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr~~~~KGr~l~kKq~e~~v~Ipf~~IkkArL~ 292 (295)
.++|..|.|...+.=|- +.|.+ ..++.++++++ + +...|-|+.+-..+ +++.-.+|++.+|.
T Consensus 9 dwiG~~VSI~C~d~LGV---yQG~I--~~V~~~~ItL~------k----aFrNGiplk~~~~E--VtLsa~DI~~L~II 70 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLGV---FQGLI--KQISAEEITIV------R----AFRNGVPLRKQNAE--VVLKCTDIRSIDLI 70 (103)
T ss_dssp GGTTCEEEEEECTTTCE---EEEEE--EEEETTEEEEE------E----EEETTEECSCSSSC--EEEETTTEEEEEEE
T ss_pred ceeceEEEEeeCCcceE---eeEEE--EEcccceeEEh------h----hhhcCcCcCCCCce--EEEEecchhheeee
Confidence 78999999999533343 56876 78888766333 1 23466655333333 89999999998874
No 23
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=35.99 E-value=86 Score=25.91 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=25.8
Q ss_pred hhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEE
Q 022576 213 GRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEIC 250 (295)
Q Consensus 213 ~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv 250 (295)
..|+|..|.|++. +|. ...|++ ..++...+++
T Consensus 8 sqFlGy~V~v~Lk--Dgs--~~qG~I--~~vd~k~LtL 39 (125)
T 4a53_A 8 ADFYGSNVEVLLN--NDS--KARGVI--TNFDSSNSIL 39 (125)
T ss_dssp HHHTTCEEEEEET--TSC--EEEEEE--EEEETTTTEE
T ss_pred HHhcCceEEEEEC--CCC--EeeEEE--EeecCCeeEE
Confidence 4689999999996 676 358987 8999998844
No 24
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=35.77 E-value=52 Score=26.26 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=30.7
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeeccccc
Q 022576 210 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN 260 (295)
Q Consensus 210 ~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~n 260 (295)
.-+..++|++|.|++. +|. .+.|+| .++|+- ..++ |.|+++.
T Consensus 5 ~~L~~~~gk~V~V~Lk--~g~--~~~G~L--~~~D~~-MNlv--L~d~~e~ 46 (119)
T 1b34_A 5 RFLMKLSHETVTIELK--NGT--QVHGTI--TGVDVS-MNTH--LKAVKMT 46 (119)
T ss_dssp HHHHTCTTCEEEEEET--TCC--EEEEEE--EEECTT-CCEE--EEEEEEE
T ss_pred HHHHHhCCCEEEEEEc--CCC--EEEEEE--EEEccc-ceEE--eccEEEe
Confidence 4577899999999995 675 578988 888864 3334 5677654
No 25
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=32.76 E-value=45 Score=26.73 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=31.5
Q ss_pred CcEEEEEEeCCCC-ChhhHHHHHHHHHHhhhccccCCCCCCCeEEEEecCC
Q 022576 152 RGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPG 201 (295)
Q Consensus 152 ~~~LrV~IDk~~G-sIDDCe~vSR~Is~~LD~~e~~d~I~~~Y~LEVSSPG 201 (295)
...++.||++.+- |...++.+.+.+...+. +.|.|||-=..
T Consensus 7 ~~~L~LyVaG~tp~S~~ai~nL~~i~e~~l~---------~~y~LeVIDv~ 48 (105)
T 1wwj_A 7 TYVLKLYVAGNTPNSVRALKMLKNILEQEFQ---------GVYALKVIDVL 48 (105)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHHHHHHT---------TSEEEEEEETT
T ss_pred ceEEEEEEeCCCchHHHHHHHHHHHHHHhcC---------CCeEEEEEEcc
Confidence 3578999997665 88888888887777664 78999997543
No 26
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=31.65 E-value=49 Score=25.26 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=29.9
Q ss_pred CCCCCCCChHHHhhc-CCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccC
Q 022576 201 GAERMLKVPDDLGRF-KEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENR 261 (295)
Q Consensus 201 GiERpLk~~~df~Rf-iGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr 261 (295)
++..|| +|-+. +|++|.|+++ +|+ .+.|+| .++|.- ..++ |.|+.+-+
T Consensus 6 ~~~~Pl----~lL~~~~~~~V~V~l~--~gr--~~~G~L--~~~D~~-mNlv--L~d~~E~~ 54 (93)
T 4emg_A 6 AVAEPL----DLVRLSLDEIVYVKLR--GDR--ELNGRL--HAYDEH-LNMV--LGDAEEIV 54 (93)
T ss_dssp ---CTT----HHHHTTTTSEEEEEET--TTE--EEEEEE--EEECTT-CCEE--EEEEEEEE
T ss_pred ccCCCH----HHHHHhCCCEEEEEEC--CCc--EEEEEE--EEECCc-ccEE--eecEEEEE
Confidence 444555 44444 8999999995 565 578988 788864 3333 55665543
No 27
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=30.54 E-value=1e+02 Score=24.04 Aligned_cols=70 Identities=9% Similarity=0.129 Sum_probs=41.6
Q ss_pred hHHHhhcCCCeeEEEEeecCCCee--EEeEEEEEeeeeCCeeEEEEEeecccccCCCCCCCccccccccceeEEeeccCc
Q 022576 209 PDDLGRFKEMPITVCYEDQDSDSR--EKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMH 286 (295)
Q Consensus 209 ~~df~RfiGr~V~V~l~~~eG~k~--~~~GvL~L~svded~itv~~~LaDVk~nr~~~~KGr~l~kKq~e~~v~Ipf~~I 286 (295)
.+++..++|+.|.++.+ .|+++ +..|+| .++=..=. ++++.+ .+ ..+|.. ..++++.|+||
T Consensus 17 K~~l~~~vG~~V~l~An--~GRkK~~er~GvL--~etYPSvF--vV~ld~---~~--~~~~~~------~~~vSYSYsDV 79 (90)
T 3fb9_A 17 KEEIKAHEGQVVEMTLE--NGRKRQKNRLGKL--IEVYPSLF--IVEFGD---VE--GDKQVN------VYVESFTYSDI 79 (90)
T ss_dssp HHHHHHTTTSEEEEEEC--CSSSCCSCEEEEE--EEECSSEE--EEEESC---ST--TSCCSS------CEEEEEEHHHH
T ss_pred HHHHHHcCCCEEEEEec--CCcccEEEEEEEE--EEecCcEE--EEEEcC---cc--CcccCC------ceEEEEEehhh
Confidence 35678899999999885 56644 457887 66555433 434321 11 011111 11488999998
Q ss_pred ceeEEEEeC
Q 022576 287 KRVTLYLEY 295 (295)
Q Consensus 287 kkArL~iEF 295 (295)
---++.+.|
T Consensus 80 LT~~v~i~~ 88 (90)
T 3fb9_A 80 LTEKNLIHY 88 (90)
T ss_dssp HTTSEEEEE
T ss_pred ccCceEEEe
Confidence 776666654
No 28
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=29.18 E-value=62 Score=26.47 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=30.2
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccc
Q 022576 210 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 259 (295)
Q Consensus 210 ~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~ 259 (295)
..+..++|++|.|++. +|+ .+.|+| .++|.- ..++ |.|+.+
T Consensus 3 ~~L~~~igk~V~V~Lk--~G~--~~~G~L--~~~D~~-MNlv--L~d~~E 43 (130)
T 1m5q_A 3 AELNNLLGREVQVVLS--NGE--VYKGVL--HAVDNQ-LNIV--LANASN 43 (130)
T ss_dssp HHHHHTTTSEEEEEET--TSC--EEEEEE--EEECTT-CCEE--EEEEEC
T ss_pred hHHHHhCCCeEEEEEC--CCc--EEEEEE--EEEccc-ceeE--EeeEEE
Confidence 3578899999999996 676 578988 788864 3344 567655
No 29
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=28.80 E-value=54 Score=26.71 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=29.9
Q ss_pred HHHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccc
Q 022576 210 DDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE 259 (295)
Q Consensus 210 ~df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~ 259 (295)
.-+..++|++|.|++. +|. .+.|+| .++|.- ..+. |.|+.+
T Consensus 8 ~~L~~~~gk~V~VeLk--nG~--~~~G~L--~~~D~~-MNi~--L~dv~e 48 (126)
T 2y9a_D 8 KVLHEAEGHIVTCETN--TGE--VYRGKL--IEAEDN-MNCQ--MSNITV 48 (126)
T ss_dssp HHHHSCSSCEEEEEES--SCC--EEEEEE--EEECTT-SCEE--EEEEEE
T ss_pred HHHHHhCCCEEEEEEC--CCc--EEEEEE--EEEcCc-eEEE--EeeEEE
Confidence 3467899999999996 565 578998 888864 4344 567665
No 30
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=28.46 E-value=34 Score=27.44 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=30.1
Q ss_pred HHhhcCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccC
Q 022576 211 DLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENR 261 (295)
Q Consensus 211 df~RfiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr 261 (295)
=+.+++|++|.|+++ +|+ .+.|+| .++|.- ..++ |.|+.+-+
T Consensus 32 lL~~~l~k~V~V~Lk--~Gr--~~~G~L--~~fD~~-mNlV--L~d~~E~~ 73 (121)
T 2fwk_A 32 LIDKCIGNRIYVVMK--GDK--EFSGVL--RGFDEY-VNMV--LDDVQEYG 73 (121)
T ss_dssp HHHHTBTSBCEEEET--TTE--EECCEE--EEECTT-CCEE--EESCCEEE
T ss_pred HHHHHcCCeEEEEEC--CCc--EEEEEE--EEEccc-CCeE--eceEEEEE
Confidence 457899999999996 675 578988 788864 3333 66776543
No 31
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=27.96 E-value=1.2e+02 Score=28.38 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=57.8
Q ss_pred CCCHHHHH--HHHHHHHHhhcCCeEEEEEEeeCCCcEEEEEEeCCCC-ChhhHHHHHHHHHHhhhccccCCCCCCCeEEE
Q 022576 120 GVPWGERA--LSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALE 196 (295)
Q Consensus 120 ~~~~~ekI--~el~epvle~~G~eLvdVe~k~~~~~~LrV~IDk~~G-sIDDCe~vSR~Is~~LD~~e~~d~I~~~Y~LE 196 (295)
|++|.+-+ ..++.++++++|+.=+ .|++++.=|.|++--... +-+++..+++.+...|... .|+-|+.+
T Consensus 144 ~~~f~~v~~aA~~~r~~L~~lGL~~f---~KTSGgkGlHV~vPl~~~~~~~~vr~fa~~~A~~l~~~-----~Pd~~t~~ 215 (309)
T 2fao_A 144 ALPWKRMLEATQLSLTLLDELGLRAF---LKTSGGKGMHLLVPLERRHGWDEVKDFAQAISQHLARL-----MPERFSAV 215 (309)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCCE---EEECSSSSEEEEEECCSCSCHHHHHHHHHHHHHHHHHH-----CTTTEECS
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcee---eEccCCCeeEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-----Ccceeehh
Confidence 35666654 4567899999998543 156554445555544445 8999999999999999852 35667655
Q ss_pred EecCCCCCCCCChHHHhhcCCCeeEEEE
Q 022576 197 VSTPGAERMLKVPDDLGRFKEMPITVCY 224 (295)
Q Consensus 197 VSSPGiERpLk~~~df~RfiGr~V~V~l 224 (295)
- .++..+-+|.|-|
T Consensus 216 ~--------------~k~~R~gkIfiDy 229 (309)
T 2fao_A 216 S--------------GPRNRVGKIFVDY 229 (309)
T ss_dssp C--------------SGGGSTTSEEEEC
T ss_pred h--------------hHhhCCCCEEEeC
Confidence 4 4566777888888
No 32
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=27.66 E-value=80 Score=25.27 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCcEEEEEEeC------CCCChhhHHHHHHHHHHhhh
Q 022576 121 VPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDK------LSNNMEELESYSQEYKKKLD 181 (295)
Q Consensus 121 ~~~~ekI~el~epvle~~G~eLvdVe~k~~~~~~LrV~IDk------~~GsIDDCe~vSR~Is~~LD 181 (295)
=.|.-+...++++++..++-+|..|+...+.++..+|.|+. .+|..=|-..+-+.|..+++
T Consensus 23 C~w~lRa~~laqeLl~tF~~~l~eVsL~Pg~gG~FeV~vdg~lVwsRk~gGFPd~keLkq~VRd~i~ 89 (107)
T 3dex_A 23 CRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVA 89 (107)
T ss_dssp TTCHHHHHHHHHHHHHHSTTTEEEEEEEEESSSCEEEEETTEEEEEHHHHCSCCHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhcccccceEEEEeCCCceEEEEECCEEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999998999865667888887743 32245556667777777777
No 33
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.01 E-value=1.2e+02 Score=21.11 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=30.8
Q ss_pred cCCCeeEEEEeecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccCCCCCCCccccccccceeEEeeccCcce
Q 022576 215 FKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKR 288 (295)
Q Consensus 215 fiGr~V~V~l~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr~~~~KGr~l~kKq~e~~v~Ipf~~Ikk 288 (295)
-.|..|+|.--|..| +.|+. .+++.+.+ .+.+. .-|++ + ++++|++++.|
T Consensus 9 ~~GD~V~V~~Gpf~g----~~G~V--~evd~e~v--~V~v~---------~fg~~----t---pvel~~~qv~K 58 (59)
T 2e6z_A 9 QPGDNVEVCEGELIN----LQGKI--LSVDGNKI--TIMPK---------HEDLK----D---MLEFPAQELRK 58 (59)
T ss_dssp CTTSEEEECSSTTTT----CEEEE--CCCBTTEE--EEEEC---------CSSCC----S---CEEEETTTEEE
T ss_pred CCCCEEEEeecCCCC----CEEEE--EEEeCCEE--EEEEE---------ecCCC----c---eEEEcHHHEEE
Confidence 468888884433444 36876 88998744 33321 11221 1 38999999987
No 34
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=23.72 E-value=2.1e+02 Score=27.17 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=44.4
Q ss_pred CCCCceeecCCCHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCcEEEEEEeCC----C--CChhhHHHHHHHH
Q 022576 111 GDGGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKL----S--NNMEELESYSQEY 176 (295)
Q Consensus 111 ~~g~~i~~~~~~~~ekI~el~epvle~~G~eLvdVe~k~~~~~~LrV~IDk~----~--GsIDDCe~vSR~I 176 (295)
-.|||+... +.+..+.++++..+++.+|..+..|.+-.+.++.+-+-+-.- + +=-|+|+++-|.+
T Consensus 239 ~~gG~~~~~-v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~~~~V~EVNg~~fvk~~~~yyd~~a~il~~~ 309 (330)
T 3t7a_A 239 SEGKEVRYP-VILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAKILGNI 309 (330)
T ss_dssp TTSCBCCEE-CCCCHHHHHHHHHHHHHTTBSEEEEEEEEETTEEEEEEEEESCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCceeee-ecCCHHHHHHHHHHHHHhCCceEEEEEEEECCccEEEEeCCCccccCchhHHHHHHHHHHHH
Confidence 356777655 677889999999999999999999999333333333333221 1 1478898876653
No 35
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=22.12 E-value=2.1e+02 Score=23.79 Aligned_cols=55 Identities=4% Similarity=-0.172 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCCeEEEEEE-eeCCCcEEEEEEeCCCCC-hhhHHHHHHHHHHhhh
Q 022576 127 ALSIAHEVLLQLGDDIKLYAF-KATPRGYVYVRLDKLSNN-MEELESYSQEYKKKLD 181 (295)
Q Consensus 127 I~el~epvle~~G~eLvdVe~-k~~~~~~LrV~IDk~~Gs-IDDCe~vSR~Is~~LD 181 (295)
|.+.+..++.++|+.+.+... ...+.-.+++.++.+..+ -+..+.+-+.+.+.+.
T Consensus 18 iva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~~ 74 (195)
T 2nyi_A 18 IVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGFQI 74 (195)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHHHHH
Confidence 455677788999999999988 444444556777643221 1235555566555443
No 36
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=20.19 E-value=2.7e+02 Score=25.96 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=41.6
Q ss_pred cCCCHHHHHHHHHHHHHhhc-CCeEEEEEE-eeCCCcEEEEEEeC--CCC----ChhhHHHHHHHHHHhhh
Q 022576 119 QGVPWGERALSIAHEVLLQL-GDDIKLYAF-KATPRGYVYVRLDK--LSN----NMEELESYSQEYKKKLD 181 (295)
Q Consensus 119 ~~~~~~ekI~el~epvle~~-G~eLvdVe~-k~~~~~~LrV~IDk--~~G----sIDDCe~vSR~Is~~LD 181 (295)
.-.+..++.++++....+.+ |+++..|.+ ....+..+-+.+-. ..+ ..++=..+...+-+.++
T Consensus 251 e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~ 321 (344)
T 2p0a_A 251 EQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMS 321 (344)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHH
Confidence 34677788999999999999 899999997 54444444445544 222 33444455556666665
Done!