BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022577
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EEA|A Chain A, The Crystal Structure Of The Gaf DomainHD DOMAIN PROTEIN
           From Geobacter Sulfurreducens
 pdb|3EEA|B Chain B, The Crystal Structure Of The Gaf DomainHD DOMAIN PROTEIN
           From Geobacter Sulfurreducens
          Length = 162

 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 234 PHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKN 288
           P +  G+   F     +M +  +  P L S L KR  +ML D  ++DLL P  + 
Sbjct: 48  PARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLMLTDPGSSDLLTPKLRK 102


>pdb|3K17|A Chain A, Crystal Structure Of A Lin0012 Protein From Listeria
           Innocua
 pdb|3K17|B Chain B, Crystal Structure Of A Lin0012 Protein From Listeria
           Innocua
 pdb|3K17|C Chain C, Crystal Structure Of A Lin0012 Protein From Listeria
           Innocua
 pdb|3K17|D Chain D, Crystal Structure Of A Lin0012 Protein From Listeria
           Innocua
          Length = 365

 Score = 32.0 bits (71), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 25/37 (67%)

Query: 252 AMVYNASPALISELEKRVGMMLEDANANDLLIPNYKN 288
           A+V +   A+++ + + + + LED+  N+L IP+Y+N
Sbjct: 22  AVVESGHTAILTAVNRYITLTLEDSERNELWIPHYEN 58


>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
 pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
 pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
 pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
          Length = 430

 Score = 28.1 bits (61), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 184 PGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKE 221
           PG++V  +G RG  Y + E +F ++N   E++   +K+
Sbjct: 216 PGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKK 253


>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
           Lactobacillus Acidophilus Ncfm
          Length = 549

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 32  SETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81
           ++ F IIL   +G P  FN   I    C  + +D  E+ E  N+ ++  A
Sbjct: 337 AKMFAIILHMMHGTPYIFNGEEIGMTNCPVKNIDEVEDIESINMYNERLA 386


>pdb|2X3M|A Chain A, Crystal Structure Of Hypothetical Protein Orf239 From
           Pyrobaculum Spherical Virus
          Length = 239

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 124 KASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWL 183
           + +R  S T D+  R   ++  + T+ +     II   K KG  PE++ + I     +  
Sbjct: 147 EVARIYSETRDMLRRVSDYYISLTTMELGKVADIIAEAKAKGENPEVVAREIAEAVPRLS 206

Query: 184 P 184
           P
Sbjct: 207 P 207


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,955,281
Number of Sequences: 62578
Number of extensions: 369182
Number of successful extensions: 796
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 7
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)