Query 022577
Match_columns 295
No_of_seqs 120 out of 349
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 04:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 8.3E-46 1.8E-50 342.8 13.1 132 139-285 1-132 (258)
2 PF00651 BTB: BTB/POZ domain; 98.3 1.4E-06 3E-11 68.7 6.0 76 2-85 32-109 (111)
3 PHA03098 kelch-like protein; P 98.2 9.2E-06 2E-10 81.6 11.9 146 2-180 32-180 (534)
4 smart00225 BTB Broad-Complex, 98.1 3.7E-06 8E-11 62.2 4.8 65 2-68 20-84 (90)
5 KOG4441 Proteins containing BT 97.8 0.00032 7E-09 72.3 14.1 200 2-269 57-260 (571)
6 PHA02713 hypothetical protein; 97.5 0.0022 4.9E-08 65.7 14.3 148 2-180 47-199 (557)
7 PHA02790 Kelch-like protein; P 97.5 0.0004 8.6E-09 69.8 8.4 95 2-112 42-136 (480)
8 PF11822 DUF3342: Domain of un 94.5 0.038 8.2E-07 53.4 3.9 76 3-85 26-102 (317)
9 smart00512 Skp1 Found in Skp1 85.9 1.3 2.9E-05 35.3 4.4 62 3-66 23-104 (104)
10 KOG2075 Topoisomerase TOP1-int 84.2 7.5 0.00016 39.8 9.7 149 6-180 144-294 (521)
11 KOG4682 Uncharacterized conser 62.4 12 0.00025 37.9 4.6 67 1-67 88-156 (488)
12 KOG0783 Uncharacterized conser 51.8 20 0.00044 39.4 4.5 85 2-114 579-675 (1267)
13 PF01402 RHH_1: Ribbon-helix-h 50.4 21 0.00045 23.1 2.9 34 148-181 5-39 (39)
14 PHA00617 ribbon-helix-helix do 46.1 31 0.00067 27.1 3.7 36 147-182 44-80 (80)
15 PF03931 Skp1_POZ: Skp1 family 43.3 21 0.00045 25.9 2.3 37 3-43 22-58 (62)
16 KOG4350 Uncharacterized conser 34.0 61 0.0013 33.1 4.5 80 2-86 65-144 (620)
17 KOG4642 Chaperone-dependent E3 30.4 34 0.00074 32.6 2.0 71 33-105 24-108 (284)
18 cd00056 ENDO3c endonuclease II 28.2 80 0.0017 26.4 3.8 45 22-68 82-127 (158)
19 PHA01623 hypothetical protein 26.4 1.1E+02 0.0024 22.1 3.7 35 147-181 18-53 (56)
20 COG2516 Biotin synthase-relate 26.4 94 0.002 30.6 4.3 76 29-106 99-185 (339)
21 PF12651 RHH_3: Ribbon-helix-h 25.9 1.2E+02 0.0026 20.7 3.7 36 147-182 7-43 (44)
22 PHA01748 hypothetical protein 24.2 1.4E+02 0.0031 21.8 4.0 38 147-184 7-45 (60)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=8.3e-46 Score=342.84 Aligned_cols=132 Identities=45% Similarity=0.879 Sum_probs=119.2
Q ss_pred CCchhhhhcccChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccc
Q 022577 139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG 218 (295)
Q Consensus 139 ~dWW~eDl~~L~~~~f~rvi~am~~~g~~~~~I~~~L~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (295)
+|||||||+.|++++|+|||.+|+++||+|++||++|+|||+||+|+..++....... .......
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~---------------~~~~~~~ 65 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSS---------------AESSTSS 65 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccccc---------------ccccchh
Confidence 5899999999999999999999999999999999999999999999986542111110 2233456
Q ss_pred hhhhHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccCccccccccccC
Q 022577 219 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPN 285 (295)
Q Consensus 219 ~~~qr~llEtiv~LLP~ek~svsc~FLf~LLR~a~~l~as~~cr~~LE~rIg~QLe~AtLdDLLIPs 285 (295)
+.+||.+||+||+|||.||+++||+|||+|||+|+++|||++||.+||+|||.|||||||||||||+
T Consensus 66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~ 132 (258)
T PF03000_consen 66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS 132 (258)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999
No 2
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.30 E-value=1.4e-06 Score=68.70 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=66.4
Q ss_pred CcccHHHHHHcCCC-CCCCccceeecCCCCChHHHHHHHHHhcCCccccC-CcchHHHhhhhhhhcCccccCCCchHHHH
Q 022577 2 SKCGYIARLELQPS-ISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFN-PNNIAPLRCASEFLDMSEEYEDGNLISKT 79 (295)
Q Consensus 2 SrSg~l~rl~~~~~-~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt-~~NVa~LrCAAe~LeMtE~~~~~NL~~~t 79 (295)
++|.||++++.... ......+|.+++++ +++|+.+.+|||+.++.++ ..|+..+...|++++|.+ |...+
T Consensus 32 ~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~~~~ 103 (111)
T PF00651_consen 32 ARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LKKAC 103 (111)
T ss_dssp HHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HHHHH
T ss_pred ccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 57999999999873 22233478888887 8899999999999999998 999999999999999997 99999
Q ss_pred HHHhhh
Q 022577 80 EAFLTL 85 (295)
Q Consensus 80 e~fL~~ 85 (295)
+.||.+
T Consensus 104 ~~~l~~ 109 (111)
T PF00651_consen 104 EKFLQE 109 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999976
No 3
>PHA03098 kelch-like protein; Provisional
Probab=98.24 E-value=9.2e-06 Score=81.55 Aligned_cols=146 Identities=14% Similarity=0.235 Sum_probs=104.8
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
++|.|++.|+...-. ..+|+|.+ -+++|+.+.+|-|.++++|+..||..|--||.+|+|.+ |....+.
T Consensus 32 a~S~yF~~mf~~~~~---~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~ 99 (534)
T PHA03098 32 SSSEYFKKMFKNNFK---ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCIN 99 (534)
T ss_pred hhhHHHHHHHhCCCC---CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 579999999975332 35778776 78999999999999999999999999999999999998 9999999
Q ss_pred HhhhhhccChHHHHHHHhhhhcccchhhhhh---hHHHHHHHHHHHhccCCccccccccCCCchhhhhcccChHHHHHHH
Q 022577 82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRII 158 (295)
Q Consensus 82 fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~---iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi 158 (295)
||.+.+- ...|-.++..|+..+ +.+.|.+-|+..... -. . -+|...|+.+..+.++
T Consensus 100 ~l~~~l~---------~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~-v~------~-----~~~f~~l~~~~l~~ll 158 (534)
T PHA03098 100 YIIKIID---------DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIEL-IY------N-----DPDFIYLSKNELIKIL 158 (534)
T ss_pred HHHHhCC---------HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-Hh------c-----CchhhcCCHHHHHHHh
Confidence 9987542 234555555666544 666777766654311 00 0 1567788877766664
Q ss_pred HHHHHcCCCchhHHHHHHHHHH
Q 022577 159 TTIKVKGTKPEIIGKCIMHYAK 180 (295)
Q Consensus 159 ~am~~~g~~~~~I~~~L~~Ya~ 180 (295)
..=.-.-.+++.+.++++.+++
T Consensus 159 ~~~~L~v~~E~~v~~av~~W~~ 180 (534)
T PHA03098 159 SDDKLNVSSEDVVLEIIIKWLT 180 (534)
T ss_pred cCCCcCcCCHHHHHHHHHHHHh
Confidence 4311111256778888887775
No 4
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.13 E-value=3.7e-06 Score=62.17 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=54.5
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCcc
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE 68 (295)
++|.++++++...........+.+.| ..+++|+.+-+|+|+.++.+++.|+..+..+|+|++|.+
T Consensus 20 ~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~ 84 (90)
T smart00225 20 ACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG 84 (90)
T ss_pred hcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence 46899999998654322344677765 579999999999999999999999999999999999986
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.83 E-value=0.00032 Score=72.27 Aligned_cols=200 Identities=18% Similarity=0.293 Sum_probs=134.5
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
+-|.|++-+++..-......+|+|.+ .-++++++...|.|..+++|+-.||-.|--||.+|+|++ +..-.-.
T Consensus 57 a~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~ 128 (571)
T KOG4441|consen 57 ACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCE 128 (571)
T ss_pred hccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHH
Confidence 45889999988533222556899988 789999999999999999999999999999999999998 8888899
Q ss_pred HhhhhhccC---hHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHhccCCccccccccCCCchhhhhcccChHHHHHHH
Q 022577 82 FLTLVILSS---WKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRII 158 (295)
Q Consensus 82 fL~~~v~~s---w~dsi~vL~sc~~l~p~ae~l~iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi 158 (295)
||.+.+..+ +--.++-+.+|..|...|.+ .|.+...+ .+. .||--.|+.+.+..+|
T Consensus 129 fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~-~i~~~F~~-----v~~---------------~eefl~L~~~~l~~ll 187 (571)
T KOG4441|consen 129 FLESQLDPSNCLGIRRFAELHSCTELLEVADE-YILQHFAE-----VSK---------------TEEFLLLSLEELIGLL 187 (571)
T ss_pred HHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHH-----Hhc---------------cHHhhCCCHHHHHhhc
Confidence 998765433 01112233456666554433 23333222 111 1566668988877777
Q ss_pred HHHHHcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccchhhh-HHHHHHHHHhcCCCC
Q 022577 159 TTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQ-RTIIENLVNLLPHQD 237 (295)
Q Consensus 159 ~am~~~g~~~~~I~~~L~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-r~llEtiv~LLP~ek 237 (295)
..-.-.--+++.+..+++.+.+.-.+. ...+ -.+++ -|.+ |
T Consensus 188 ~~d~l~v~~E~~vf~a~~~Wv~~d~~~---------------------------------R~~~~~~ll~-~vr~-~--- 229 (571)
T KOG4441|consen 188 SSDDLNVDSEEEVFEAAMRWVKHDFEE---------------------------------REEHLPALLE-AVRL-P--- 229 (571)
T ss_pred cccCCCcCCHHHHHHHHHHHHhcCHhh---------------------------------HHHHHHHHHH-hcCc-c---
Confidence 665555556667677766666421110 0000 11222 2222 3
Q ss_pred CcccHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022577 238 EGVSCKFFLQMLKMAMVYNASPALISELEKRV 269 (295)
Q Consensus 238 ~svsc~FLf~LLR~a~~l~as~~cr~~LE~rI 269 (295)
.+|-.||.......-.+..+.+||.-|..=.
T Consensus 230 -ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 230 -LLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred -CCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 4888999999999999999999999886533
No 6
>PHA02713 hypothetical protein; Provisional
Probab=97.49 E-value=0.0022 Score=65.74 Aligned_cols=148 Identities=14% Similarity=0.218 Sum_probs=95.6
Q ss_pred CcccHHHHHHcCCCC-CCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHH
Q 022577 2 SKCGYIARLELQPSI-SNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (295)
Q Consensus 2 SrSg~l~rl~~~~~~-~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te 80 (295)
+.|.||+.|++..-. +....+|+|.++ .+++|+.+.+|.|..+ |++.||-.|--||.+|+|++ |....+
T Consensus 47 a~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~ 116 (557)
T PHA02713 47 AGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVTDCE 116 (557)
T ss_pred hcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHHHHH
Confidence 579999999975321 112457889876 5899999999999886 78999999999999999997 999999
Q ss_pred HHhhhhhccChHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHH---hccCCccccccccCCCchhhhhcccChHHHHHH
Q 022577 81 AFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWK---ASRENSTTEDIANRQGWWFDDVATLGIDHFMRI 157 (295)
Q Consensus 81 ~fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~iv~RCidsla~k---a~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rv 157 (295)
.||.+.+-. ..++.+++...... ...+.+.|-+=|+.. ++.+ |+...|+.+....+
T Consensus 117 ~~l~~~l~~--~NCl~i~~~~~~~~----~~~L~~~a~~~i~~~f~~v~~~---------------~ef~~L~~~~l~~l 175 (557)
T PHA02713 117 SYIKDYTNH--DTCIYMYHRLYEMS----HIPIVKYIKRMLMSNIPTLITT---------------DAFKKTVFEILFDI 175 (557)
T ss_pred HHHHhhCCc--cchHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhCC---------------hhhhhCCHHHHHHH
Confidence 999875532 23333332111110 001222222222211 1221 56677887776666
Q ss_pred HHHHHHcCC-CchhHHHHHHHHHH
Q 022577 158 ITTIKVKGT-KPEIIGKCIMHYAK 180 (295)
Q Consensus 158 i~am~~~g~-~~~~I~~~L~~Ya~ 180 (295)
|..=..-.+ +++.|-++++.+.+
T Consensus 176 L~~d~~l~v~~Ee~v~eav~~W~~ 199 (557)
T PHA02713 176 ISTNDNVYLYREGYKVTILLKWLE 199 (557)
T ss_pred hccccccCCCcHHHHHHHHHHHHh
Confidence 654221123 57788888888775
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=97.46 E-value=0.0004 Score=69.76 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=71.5
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
+-|.|||.|++..-.+ ...++.+....-.+++++.+.+|-|.++|+||..||-.+-.||.||+|++ ++.....
T Consensus 42 a~S~YFraMF~~~~~E-s~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~~ 114 (480)
T PHA02790 42 KLSPYFRTHLRQKYTK-NKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTCIN 114 (480)
T ss_pred hcCHHHHHHhcCCccc-cccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHHHH
Confidence 4688999998752221 12345553233468999999999999999999999999999999999997 9999999
Q ss_pred HhhhhhccChHHHHHHHhhhhcccchhhhhh
Q 022577 82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ 112 (295)
Q Consensus 82 fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~ 112 (295)
||.+.+-.+ .|-.+..+|+..+
T Consensus 115 fL~~~l~~~---------NCl~i~~~A~~y~ 136 (480)
T PHA02790 115 FILRDFRKE---------YCVECYMMGIEYG 136 (480)
T ss_pred HHHhhCCcc---------hHHHHHHHHHHhC
Confidence 999865432 3444455555444
No 8
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=94.54 E-value=0.038 Score=53.39 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=56.4
Q ss_pred cccHHHHHHcC-CCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 3 KCGYIARLELQ-PSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 3 rSg~l~rl~~~-~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
.=+|++..+.. .+++....+|.|. +-=.-..||.-.++++|....|||.||+++---++||+|++ |++.+=.
T Consensus 26 ~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve~cl~ 98 (317)
T PF11822_consen 26 EMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVEECLQ 98 (317)
T ss_pred hhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHHHHHH
Confidence 34677777743 1111122234331 22345799999999999999999999999999999999997 9999999
Q ss_pred Hhhh
Q 022577 82 FLTL 85 (295)
Q Consensus 82 fL~~ 85 (295)
|...
T Consensus 99 y~~~ 102 (317)
T PF11822_consen 99 YCHD 102 (317)
T ss_pred HHHH
Confidence 9855
No 9
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=85.93 E-value=1.3 Score=35.27 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=39.6
Q ss_pred cccHHHHHHcCCCCCC-CccceeecCCCCChHHHHHHHHHhcCCc---c----------------ccCCcchHHHhhhhh
Q 022577 3 KCGYIARLELQPSISN-LGYDLKLENFPGGSETFEIILKFCYGLP---I----------------AFNPNNIAPLRCASE 62 (295)
Q Consensus 3 rSg~l~rl~~~~~~~~-~~~~i~l~dfPGG~e~FEl~akFCYg~~---i----------------~lt~~NVa~LrCAAe 62 (295)
.|+.++.++.+..... ....|.|++++ +.+++.+.+||+--+ . .+...++--|-.||.
T Consensus 23 ~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAn 100 (104)
T smart00512 23 QSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAAN 100 (104)
T ss_pred HHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHH
Confidence 5888999988644321 12356666665 689999999997321 0 044445666667777
Q ss_pred hhcC
Q 022577 63 FLDM 66 (295)
Q Consensus 63 ~LeM 66 (295)
||++
T Consensus 101 yL~I 104 (104)
T smart00512 101 YLDI 104 (104)
T ss_pred hhCC
Confidence 7764
No 10
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=84.24 E-value=7.5 Score=39.84 Aligned_cols=149 Identities=12% Similarity=0.170 Sum_probs=98.6
Q ss_pred HHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHHHhhh
Q 022577 6 YIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTL 85 (295)
Q Consensus 6 ~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~fL~~ 85 (295)
.+-+|..+.-......+|+++|+ -|.+|+---||=|+..+.+.|.||-.+.-+|.= |-.+-|...+-+|++.
T Consensus 144 VFdaMf~g~~a~~~s~ei~lpdv--epaaFl~~L~flYsdev~~~~dtvi~tl~~AkK------Y~VpaLer~CVkflr~ 215 (521)
T KOG2075|consen 144 VFDAMFYGGLAEDASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAADTVITTLYAAKK------YLVPALERQCVKFLRK 215 (521)
T ss_pred HHHHHhccCcccccCceeecCCc--ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHH------hhhHHHHHHHHHHHHH
Confidence 34455554332223568889876 689999999999999999999999988777752 2233488888888887
Q ss_pred hhccChHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHh--ccCCccccccccCCCchhhhhcccChHHHHHHHHHHHH
Q 022577 86 VILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKA--SRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKV 163 (295)
Q Consensus 86 ~v~~sw~dsi~vL~sc~~l~p~ae~l~iv~RCidsla~ka--~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi~am~~ 163 (295)
..+. +....-|-+|-.++ ++=.+.++|++.|.-.. |.++ =||-|.-.+ .++|+-|++.= -
T Consensus 216 ~l~~--~naf~~L~q~A~lf---~ep~Li~~c~e~id~~~~~al~~-----------EGf~did~~-~dt~~evl~r~-~ 277 (521)
T KOG2075|consen 216 NLMA--DNAFLELFQRAKLF---DEPSLISICLEVIDKSFEDALTP-----------EGFCDIDST-RDTYEEVLRRD-T 277 (521)
T ss_pred hcCC--hHHHHHHHHHHHhh---cCHHHHHHHHHHhhhHHHhhhCc-----------cceeehhhH-HHHHHHHHhhc-c
Confidence 5543 33344444554443 45569999999887443 3333 267776555 77777765421 1
Q ss_pred cCCCchhHHHHHHHHHH
Q 022577 164 KGTKPEIIGKCIMHYAK 180 (295)
Q Consensus 164 ~g~~~~~I~~~L~~Ya~ 180 (295)
..++.-.+-+++..|++
T Consensus 278 l~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 278 LEAREFRLFEAALKWAE 294 (521)
T ss_pred cchhHHHHHHHHHhhcc
Confidence 23456677777777775
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=62.39 E-value=12 Score=37.88 Aligned_cols=67 Identities=7% Similarity=0.075 Sum_probs=57.0
Q ss_pred CCcccHHHHHHcCCCCCC--CccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCc
Q 022577 1 MSKCGYIARLELQPSISN--LGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMS 67 (295)
Q Consensus 1 ~SrSg~l~rl~~~~~~~~--~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMt 67 (295)
++.|+||+-|....-... +-..++|.|=.....+|..|-+==|-.+|+|.++-|+.+-.||.+|...
T Consensus 88 L~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqld 156 (488)
T KOG4682|consen 88 LFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLD 156 (488)
T ss_pred eeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHh
Confidence 467899999988654322 2346778998999999999999999999999999999999999999876
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=51.79 E-value=20 Score=39.42 Aligned_cols=85 Identities=22% Similarity=0.432 Sum_probs=54.1
Q ss_pred CcccHHHHHHcCCCCC------------CCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccc
Q 022577 2 SKCGYIARLELQPSIS------------NLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEE 69 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~------------~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~ 69 (295)
+||..||+|+..-.++ ...++|...|+| |.+||+.-.|-|..+ -+.|+.-=-.-|.+- +
T Consensus 579 ~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt-~~~P~heDdidci~f------s 649 (1267)
T KOG0783|consen 579 ARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT-LLSPWHEDDIDCIRF------S 649 (1267)
T ss_pred eccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc-ccCCccccchhhhhc------c
Confidence 6899999998864432 134677788888 589999999999765 455521111111110 1
Q ss_pred cCCCchHHHHHHHhhhhhccChHHHHHHHhhhhcccchhhhhhhH
Q 022577 70 YEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIV 114 (295)
Q Consensus 70 ~~~~NL~~~te~fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~iv 114 (295)
..+.|+.+|| ++|+.|.|.+|..+++
T Consensus 650 ~~k~N~~qrt-------------------rtCeMl~~~lekf~l~ 675 (1267)
T KOG0783|consen 650 PLKENLSQRT-------------------RTCEMLANLLEKFHLA 675 (1267)
T ss_pred ccccChhhcc-------------------cHHHHHHHHHhhhhHH
Confidence 2456766643 5688888888876654
No 13
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=50.44 E-value=21 Score=23.07 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=29.2
Q ss_pred ccChHHHHHHHHHHHHcCC-CchhHHHHHHHHHHH
Q 022577 148 TLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKK 181 (295)
Q Consensus 148 ~L~~~~f~rvi~am~~~g~-~~~~I~~~L~~Ya~k 181 (295)
.||.+.++++=...+..|+ ..++|-.+|..|.++
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 5788889998888899997 688999999999864
No 14
>PHA00617 ribbon-helix-helix domain containing protein
Probab=46.07 E-value=31 Score=27.09 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=32.8
Q ss_pred cccChHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHh
Q 022577 147 ATLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKKW 182 (295)
Q Consensus 147 ~~L~~~~f~rvi~am~~~g~-~~~~I~~~L~~Ya~k~ 182 (295)
..||.++.+++-.-.+..|. ++++|.++|..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 67999999999999999996 7899999999999876
No 15
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=43.31 E-value=21 Score=25.86 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.9
Q ss_pred cccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhc
Q 022577 3 KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCY 43 (295)
Q Consensus 3 rSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCY 43 (295)
.|+.|+.++.+..+.+. .|.|++++ +++++.+..+|+
T Consensus 22 ~S~~i~~ml~~~~~~~~--~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 22 QSKTIKNMLEDLGDEDE--PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp TSHHHHHHHHCTCCCGT--EEEETTS---HHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhccccc--ccccCccC--HHHHHHHHHHHH
Confidence 68899999987654312 57777654 589999999997
No 16
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=34.04 E-value=61 Score=33.11 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=57.2
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
.||.|+|.|+...-.......|-|. --.+|||-..-|+-|.+++.++----- ---+||+|.-.|+---|-.-+-.
T Consensus 65 aRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~~l~~~~ed---~lld~LslAh~Ygf~~Le~aiSe 139 (620)
T KOG4350|consen 65 ARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGKIDLAGVEED---ILLDYLSLAHRYGFIQLETAISE 139 (620)
T ss_pred HHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcceecccchHH---HHHHHHHHHHhcCcHHHHHHHHH
Confidence 4899999999853221111123332 235899999999999999988764433 34589999988887778888888
Q ss_pred Hhhhh
Q 022577 82 FLTLV 86 (295)
Q Consensus 82 fL~~~ 86 (295)
||.++
T Consensus 140 Yl~~i 144 (620)
T KOG4350|consen 140 YLKEI 144 (620)
T ss_pred HHHHH
Confidence 88774
No 17
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.44 E-value=34 Score=32.56 Aligned_cols=71 Identities=31% Similarity=0.450 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCccccCCcchHHHhh-hhhhhcCc-----ccc------CCCchHHHHHHHhhhhhccC--hHHHHHHH
Q 022577 33 ETFEIILKFCYGLPIAFNPNNIAPLRC-ASEFLDMS-----EEY------EDGNLISKTEAFLTLVILSS--WKETITVL 98 (295)
Q Consensus 33 e~FEl~akFCYg~~i~lt~~NVa~LrC-AAe~LeMt-----E~~------~~~NL~~~te~fL~~~v~~s--w~dsi~vL 98 (295)
+-|--+.. ||+..|.+||.+.+.-+- |-.||.|. ++- -.+||+ +++-||.+..+.+ ..++|.+|
T Consensus 24 k~y~~ai~-~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v-k~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAID-CYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV-KAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhchHHH-HHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH-HHHHHHHHHHHhhccccHHHHHH
Confidence 44555666 999999999999776554 44566543 331 137875 6788888876655 67999999
Q ss_pred hhhhccc
Q 022577 99 KSCKNLS 105 (295)
Q Consensus 99 ~sc~~l~ 105 (295)
+..++++
T Consensus 102 qra~sl~ 108 (284)
T KOG4642|consen 102 QRAYSLL 108 (284)
T ss_pred HHHHHHH
Confidence 9886654
No 18
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=28.24 E-value=80 Score=26.40 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=36.1
Q ss_pred ceeecCCCC-ChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCcc
Q 022577 22 DLKLENFPG-GSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (295)
Q Consensus 22 ~i~l~dfPG-G~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE 68 (295)
.-.|..||| |+++=+.+..||+| .+.=|-.+...|.+..+..+.+
T Consensus 82 ~~~L~~l~GIG~~tA~~~l~~~~~--~~~~pvD~~v~r~~~~~~~~~~ 127 (158)
T cd00056 82 REELLALPGVGRKTANVVLLFALG--PDAFPVDTHVRRVLKRLGLIPK 127 (158)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHCC--CCCCccchhHHHHHHHhCCCCC
Confidence 445677888 99999999999999 4444558999999999988754
No 19
>PHA01623 hypothetical protein
Probab=26.43 E-value=1.1e+02 Score=22.12 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=31.1
Q ss_pred cccChHHHHHHHHHHHHcCC-CchhHHHHHHHHHHH
Q 022577 147 ATLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKK 181 (295)
Q Consensus 147 ~~L~~~~f~rvi~am~~~g~-~~~~I~~~L~~Ya~k 181 (295)
..||-++++++-.-....|+ +.++|-.+|..|..+
T Consensus 18 Vrldeel~~~Ld~y~~~~g~~rSe~IreAI~~yL~~ 53 (56)
T PHA01623 18 IYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_pred EEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 56889999999999999997 789999999999865
No 20
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=26.36 E-value=94 Score=30.58 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHh--cCCccccC----Ccc-----hHHHhhhhhhhcCccccCCCchHHHHHHHhhhhhccChHHHHHH
Q 022577 29 PGGSETFEIILKFC--YGLPIAFN----PNN-----IAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITV 97 (295)
Q Consensus 29 PGG~e~FEl~akFC--Yg~~i~lt----~~N-----Va~LrCAAe~LeMtE~~~~~NL~~~te~fL~~~v~~sw~dsi~v 97 (295)
--+.+++.+..++| ||..|.|+ +-- .-.-.--|++++.+||....-++++.- ...-.-.||++-+.+
T Consensus 99 ~~~~d~~~i~~~~~~~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~--~~s~s~~S~e~~~~~ 176 (339)
T COG2516 99 RALNDLKLILERLHIRLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVR--KTSGSPHSWERYWEF 176 (339)
T ss_pred cccchhhhhhhhhhhccCCceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHH--hccCCCCcHHHHHHH
Confidence 34679999999999 67766665 111 113456788999999877666666554 445566789999999
Q ss_pred Hhhhhcccc
Q 022577 98 LKSCKNLSP 106 (295)
Q Consensus 98 L~sc~~l~p 106 (295)
|--|-..++
T Consensus 177 l~~~~~~~~ 185 (339)
T COG2516 177 LEKVAEAFG 185 (339)
T ss_pred HHHHHHHhc
Confidence 888877665
No 21
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=25.92 E-value=1.2e+02 Score=20.69 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=30.4
Q ss_pred cccChHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHh
Q 022577 147 ATLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKKW 182 (295)
Q Consensus 147 ~~L~~~~f~rvi~am~~~g~-~~~~I~~~L~~Ya~k~ 182 (295)
..|+.++++++=.-=+..|+ ..++|.++|..|.+++
T Consensus 7 ~~l~~el~~~L~~ls~~t~i~~S~Ll~eAle~~l~ky 43 (44)
T PF12651_consen 7 FSLDKELYEKLKELSEETGIPKSKLLREALEDYLEKY 43 (44)
T ss_pred EecCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 46888999998888788897 5889999999998864
No 22
>PHA01748 hypothetical protein
Probab=24.24 E-value=1.4e+02 Score=21.76 Aligned_cols=38 Identities=21% Similarity=0.123 Sum_probs=31.9
Q ss_pred cccChHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcC
Q 022577 147 ATLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKKWLP 184 (295)
Q Consensus 147 ~~L~~~~f~rvi~am~~~g~-~~~~I~~~L~~Ya~k~l~ 184 (295)
..||-++++++-.-.+..|+ ++++|-.++..|.+...-
T Consensus 7 vrLp~el~~eld~~a~~~g~~RSE~Ir~Ai~~~~~~~~~ 45 (60)
T PHA01748 7 FKIEEDLLELLDRYAIKHGLNRSEAIRKAIEKMVKDELK 45 (60)
T ss_pred EECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999897 789999999999876443
Done!