Query 022577
Match_columns 295
No_of_seqs 120 out of 349
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 07:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3n_A Kelch-like protein 11; 99.0 7.6E-10 2.6E-14 100.7 7.6 201 2-267 56-263 (279)
2 3hve_A Gigaxonin; ubiquitin, c 98.8 2.6E-09 8.9E-14 95.9 4.9 199 2-267 52-256 (256)
3 2vkp_A BTB/POZ domain-containi 98.6 5.7E-08 1.9E-12 75.9 6.3 76 2-86 33-108 (109)
4 1buo_A POZ domain, protein (pr 98.6 6.6E-08 2.3E-12 77.5 6.3 73 2-87 49-121 (121)
5 3htm_A Speckle-type POZ protei 98.5 1.6E-07 5.4E-12 78.6 7.7 106 2-124 55-163 (172)
6 2if5_A Zinc finger and BTB dom 98.5 9.5E-08 3.2E-12 76.1 5.7 75 2-84 46-120 (120)
7 3b84_A Zinc finger and BTB dom 98.5 9.5E-08 3.2E-12 76.5 4.9 73 2-86 45-117 (119)
8 2vpk_A Myoneurin; transcriptio 98.4 2.6E-07 8.8E-12 73.2 6.3 72 2-85 43-116 (116)
9 1r29_A B-cell lymphoma 6 prote 98.4 3.6E-07 1.2E-11 73.5 6.8 75 2-85 50-125 (127)
10 2q81_A MIZ-1 protein; BTB/POZ 98.4 2.4E-07 8.3E-12 74.1 4.7 70 2-84 48-117 (119)
11 2ppi_A Gigaxonin; BTB domain, 98.4 3.3E-07 1.1E-11 76.1 5.4 74 2-83 68-143 (144)
12 2yy9_A Zinc finger and BTB dom 98.4 1.7E-07 5.9E-12 76.8 3.5 74 2-87 46-119 (135)
13 2z8h_A Transcription regulator 98.4 6.6E-07 2.3E-11 73.3 6.6 76 2-87 57-133 (138)
14 3ga1_A Nucleus accumbens-assoc 98.3 1.7E-07 5.7E-12 75.9 2.8 73 2-86 54-127 (129)
15 4eoz_A Speckle-type POZ protei 98.3 1.6E-07 5.3E-12 76.5 2.4 94 2-112 46-139 (145)
16 3ohu_A Transcription regulator 98.2 3.9E-07 1.3E-11 73.1 2.8 63 2-68 53-116 (125)
17 2ihc_A Transcription regulator 98.1 1.1E-06 3.7E-11 70.7 2.7 73 2-84 50-123 (124)
18 3hqi_A Speckle-type POZ protei 98.1 4.5E-06 1.5E-10 76.6 6.3 106 2-124 195-303 (312)
19 3m5b_A Zinc finger and BTB dom 98.0 3E-06 1E-10 68.4 4.1 57 21-85 61-117 (119)
20 3fkc_A Transcriptional regulat 98.0 4.8E-06 1.6E-10 66.4 4.3 60 2-68 52-112 (116)
21 4ajy_C Transcription elongatio 96.8 0.0017 6E-08 50.3 5.8 62 2-65 22-96 (97)
22 2ast_A S-phase kinase-associat 96.8 0.00084 2.9E-08 56.6 4.1 79 2-88 21-127 (159)
23 1fs1_B SKP1, cyclin A/CDK2-ass 94.9 0.025 8.7E-07 46.7 4.7 74 2-87 22-121 (141)
24 2p1m_A SKP1-like protein 1A; F 94.7 0.011 3.8E-07 49.9 1.8 76 2-88 24-126 (160)
25 3v7d_A Suppressor of kinetocho 89.1 0.59 2E-05 39.7 5.7 78 2-87 27-133 (169)
26 2fnj_C Transcription elongatio 87.2 0.4 1.4E-05 36.9 3.1 63 2-66 21-96 (96)
27 1hv2_A Elongin C, ELC1; protei 81.8 0.82 2.8E-05 35.4 2.7 62 2-66 24-99 (99)
28 1vcb_B Protein (elongin C); tu 74.7 1.2 4.3E-05 35.3 1.8 63 2-66 37-112 (112)
29 1pd7_B MAD1; PAH2, SIN3, eukar 47.9 6.2 0.00021 23.7 0.9 17 52-68 3-19 (26)
30 2k9i_A Plasmid PRN1, complete 36.3 37 0.0013 22.2 3.6 36 147-182 14-50 (55)
31 2cpg_A REPA protein, transcrip 33.8 28 0.00097 22.0 2.6 35 147-181 7-42 (45)
32 2eqx_A Kelch repeat and BTB do 29.0 39 0.0013 25.5 3.1 32 48-85 7-38 (105)
33 3drz_A BTB/POZ domain-containi 22.0 1.2E+02 0.0041 23.0 4.7 48 30-83 56-104 (107)
34 2kel_A SVTR protein, uncharact 21.7 78 0.0027 21.8 3.2 35 147-181 18-53 (56)
35 3s6i_A DNA-3-methyladenine gly 21.7 73 0.0025 27.8 3.8 46 23-68 139-185 (228)
36 2gpe_A Bifunctional protein PU 20.9 84 0.0029 20.5 3.2 36 147-182 8-44 (52)
No 1
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=98.98 E-value=7.6e-10 Score=100.74 Aligned_cols=201 Identities=11% Similarity=0.167 Sum_probs=136.5
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCC----CCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENF----PGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLIS 77 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~df----PGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~ 77 (295)
++|.|++.++...-.......|.|+++ ...+++|+.+-+|+|++++.+++.||..+..||.+|+|.+ |..
T Consensus 56 a~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~ 129 (279)
T 3i3n_A 56 AATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------LKE 129 (279)
T ss_dssp HHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------HHH
T ss_pred HcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------HHH
Confidence 478999999875432224458889876 4578999999999999999999999999999999999986 999
Q ss_pred HHHHHhhhhhccChHHHHHHHhhhhcccchhhhhh---hHHHHHHHHHHHhccCCccccccccCCCchhhhhcccChHHH
Q 022577 78 KTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHF 154 (295)
Q Consensus 78 ~te~fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~---iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f 154 (295)
..+.||.+.+-. ..|-.++.+|+..+ +.++|.+-|......= +-.++...|+.+..
T Consensus 130 ~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v------------~~~~~f~~L~~~~l 188 (279)
T 3i3n_A 130 FCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMIRRNFHKV------------IQDEEFYTLPFHLI 188 (279)
T ss_dssp HHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHH------------TTSSGGGGSCHHHH
T ss_pred HHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH------------hcCcChhcCCHHHH
Confidence 999999885432 23444555666554 7778887776543210 01156678998887
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccchhhhHHHHHHHHHhcC
Q 022577 155 MRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLP 234 (295)
Q Consensus 155 ~rvi~am~~~g~~~~~I~~~L~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtiv~LLP 234 (295)
..++..=.-.-.+++.|-.+++.|++... .+.+..+..+...+-
T Consensus 189 ~~lL~~d~L~v~sE~~vf~av~~W~~~~~------------------------------------~~r~~~~~~ll~~VR 232 (279)
T 3i3n_A 189 RDWLSDLEITVDSEEVLFETVLKWVQRNA------------------------------------EERERYFEELFKLLR 232 (279)
T ss_dssp HHHHTCSSCCCSCHHHHHHHHHHHHHTTH------------------------------------HHHTTTHHHHHTTSC
T ss_pred HHHhcCcCCCCCCHHHHHHHHHHHHHcCH------------------------------------HHHHHHHHHHHHhcC
Confidence 77654211111246678888887775210 011122333333321
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022577 235 HQDEGVSCKFFLQMLKMAMVYNASPALISELEK 267 (295)
Q Consensus 235 ~ek~svsc~FLf~LLR~a~~l~as~~cr~~LE~ 267 (295)
. ..+|..+|..+++..-.+..++.|+.-+..
T Consensus 233 f--~l~~~~~L~~~v~~~~l~~~~~~c~~~l~e 263 (279)
T 3i3n_A 233 L--SQMKPTYLTRHVKPERLVANNEVCVKLVAD 263 (279)
T ss_dssp G--GGSCHHHHHHTTTTSHHHHTCHHHHHHHHH
T ss_pred C--CCCCHHHHHHHhhccchhcCCHHHHHHHHH
Confidence 1 458999999999988888999999988764
No 2
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=98.81 E-value=2.6e-09 Score=95.86 Aligned_cols=199 Identities=13% Similarity=0.189 Sum_probs=119.3
Q ss_pred CcccHHHHHHcCCCC--CCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHH
Q 022577 2 SKCGYIARLELQPSI--SNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKT 79 (295)
Q Consensus 2 SrSg~l~rl~~~~~~--~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~t 79 (295)
++|.|++.++..... .....+|.++|+ .+++|+.+-+|+|++++.+++.||..+..||.+|+|.+ |....
T Consensus 52 a~S~yF~~mf~~~~~~~e~~~~~i~l~~v--~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~------l~~~c 123 (256)
T 3hve_A 52 AASPYIRTKLNYNPPKDDGSTYKIELEGI--SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTD------LKTLC 123 (256)
T ss_dssp TTCHHHHHTC-----------CEEECSSC--CHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHH------HHHHH
T ss_pred HcCHHHHHHhCCCCCcccCCCCeEEeCCC--CHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHH------HHHHH
Confidence 579999999875322 124457888887 48999999999999999999999999999999999997 99999
Q ss_pred HHHhhhhhccChHHHHHHHhhhhcccchhhhhh---hHHHHHHHHHHHhccCCccccccccCCCchhhhhcccChHHHHH
Q 022577 80 EAFLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMR 156 (295)
Q Consensus 80 e~fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~---iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~r 156 (295)
+.||.+.+-.+ .|-.++.+|+..+ +.+.|.+-|......=. -.++...|+.+....
T Consensus 124 ~~~L~~~l~~~---------n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~------------~~~~f~~L~~~~l~~ 182 (256)
T 3hve_A 124 CEFLEGCIAAE---------NCIGIRDFALHYCLHHVHYLATEYLETHFRDVS------------STEEFLELSPQKLKE 182 (256)
T ss_dssp HHHHHHTCCSS---------TTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------TCHHHHSSCHHHHHH
T ss_pred HHHHHhhCCHh---------hHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHh------------CCcchhcCCHHHHHH
Confidence 99998865322 3444445555544 66777777665432100 126778899988888
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccchhhhHHHHHHHHHhcCCC
Q 022577 157 IITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQ 236 (295)
Q Consensus 157 vi~am~~~g~~~~~I~~~L~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtiv~LLP~e 236 (295)
++..=.-.-.+++.|-.+++ +|+-.-. . ++ ...-..+++.| .+ |
T Consensus 183 lL~~d~L~v~~E~~v~~av~----~W~~~~~---~---------~R----------------~~~~~~ll~~V-Rf-~-- 226 (256)
T 3hve_A 183 VISLEKLNVGNERYVFEAVI----RWIAHDT---E---------IR----------------KVHMKDVMSAL-WV-S-- 226 (256)
T ss_dssp HHHCC-------CTTHHHHT----TTCCC-----C---------CS----------------TTTHHHHHHHH-HH-H--
T ss_pred HHccCCCCCCCHHHHHHHHH----HHHHcCH---H---------HH----------------HHHHHHHHHhC-CC-C--
Confidence 77532222123556665555 4543210 0 00 00113455554 22 2
Q ss_pred CCcccHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 022577 237 DEGVSCKFFLQMLKMAMVYNAS-PALISELEK 267 (295)
Q Consensus 237 k~svsc~FLf~LLR~a~~l~as-~~cr~~LE~ 267 (295)
.+|..+|...+..--.+..+ +.||.-|++
T Consensus 227 --~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~ 256 (256)
T 3hve_A 227 --GLDSSYLREQMLNEPLVREIVKECSNIPLS 256 (256)
T ss_dssp --TTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred --CCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence 26667888887776667666 578877764
No 3
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=98.61 E-value=5.7e-08 Score=75.86 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=63.5
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
++|.|+++++...-..+. ..|.|+|+ .+++|+.+.+|+|++++.+++.|+..+..+|++++|++ |...++.
T Consensus 33 ~~S~~F~~~f~~~~~e~~-~~i~l~~~--~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~------L~~~c~~ 103 (109)
T 2vkp_A 33 VGSSVFYAMFYGDLAEVK-SEIHIPDV--EPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPA------LAKACVN 103 (109)
T ss_dssp HHCHHHHHHHC------C-CEEEETTS--CHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred HcCHHHHHHhcCCcccCC-CeEEeCCC--CHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 489999999986433223 67888776 58999999999999999999999999999999999997 9999999
Q ss_pred Hhhhh
Q 022577 82 FLTLV 86 (295)
Q Consensus 82 fL~~~ 86 (295)
||.+.
T Consensus 104 ~l~~~ 108 (109)
T 2vkp_A 104 FLETS 108 (109)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99764
No 4
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=98.59 E-value=6.6e-08 Score=77.50 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=65.2
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
++|.|+++++.. +..+|.|+|++ +++|+.+-+|+|++++.+++.|+..+..+|++++|.+ |....+.
T Consensus 49 a~S~yF~~~f~~-----~~~~i~l~~~~--~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~------L~~~c~~ 115 (121)
T 1buo_A 49 CTSKMFEILFHR-----NSQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLK 115 (121)
T ss_dssp HHCHHHHHHTTS-----CCSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHH
T ss_pred hcCHHHHHHHcC-----CCcEEEeCCCC--HHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHH------HHHHHHH
Confidence 589999999875 24578888875 8999999999999999999999999999999999996 9999999
Q ss_pred Hhhhhh
Q 022577 82 FLTLVI 87 (295)
Q Consensus 82 fL~~~v 87 (295)
||.+.+
T Consensus 116 ~l~~~I 121 (121)
T 1buo_A 116 MLETIQ 121 (121)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998753
No 5
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=98.54 E-value=1.6e-07 Score=78.64 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=81.7
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
++|.||++++...-.......|.|+|++ +++|+.+-+|+|+.++.+++.|+..+..+|++++|.+ |...++.
T Consensus 55 ~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~ 126 (172)
T 3htm_A 55 ARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMCED 126 (172)
T ss_dssp HHCHHHHHHHHSCCCGGGTTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred HcCHHHHHHHccCccccCCCeEEecCCC--HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 5799999999864332244688898874 8999999999999999999999999999999999997 9999999
Q ss_pred HhhhhhccChHHHHHHHhhhhcccchhhhhh---hHHHHHHHHHHH
Q 022577 82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWK 124 (295)
Q Consensus 82 fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~---iv~RCidsla~k 124 (295)
||.+.+- -.. |-.++.+|+..+ +.+.|.+-|...
T Consensus 127 ~l~~~l~--~~n-------~~~~~~~A~~~~~~~L~~~~~~~i~~~ 163 (172)
T 3htm_A 127 ALCSNLS--VEN-------AAEILILADLHSADQLKTQAVDFINYH 163 (172)
T ss_dssp HHHHTCC--TTT-------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhCC--HHH-------HHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 9987542 223 333444454433 677777776643
No 6
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=98.53 E-value=9.5e-08 Score=76.08 Aligned_cols=75 Identities=12% Similarity=0.288 Sum_probs=62.6
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
++|.|+++++...-.......|.|+++ .+++|+.+-+|+|++++.+++.|+..+..+|++++|.+ |....+.
T Consensus 46 a~S~~F~~~f~~~~~e~~~~~i~l~~~--~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~------L~~~C~~ 117 (120)
T 2if5_A 46 ACSQYFKKLFTSGAVVDQQNVYEIDFV--SAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPA------VSHVCAD 117 (120)
T ss_dssp HHCHHHHHHHHC-----CCSEEECCSS--CHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred HhCHHHHHHhcCCccccCCceEEeCCC--CHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHH------HHHHHHH
Confidence 479999999986432224457888776 48999999999999999999999999999999999997 9999999
Q ss_pred Hhh
Q 022577 82 FLT 84 (295)
Q Consensus 82 fL~ 84 (295)
||+
T Consensus 118 ~L~ 120 (120)
T 2if5_A 118 LLD 120 (120)
T ss_dssp HHC
T ss_pred HhC
Confidence 884
No 7
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=98.49 E-value=9.5e-08 Score=76.47 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=63.2
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
++|.|++.++.... ...|.|+|++ +++|+.+-+|+|++++.+++.|+..+..+|++++|.+ |....+.
T Consensus 45 a~S~yF~~~f~~~~----~~~i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~------L~~~C~~ 112 (119)
T 3b84_A 45 CCSHFFQSLYGDGS----GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPE------AVELCQS 112 (119)
T ss_dssp HHCHHHHHHHTTTT----CCCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred hcCHHHHHHHCCCC----CCeEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 47999999998633 3578888877 8999999999999999999999999999999999997 9999999
Q ss_pred Hhhhh
Q 022577 82 FLTLV 86 (295)
Q Consensus 82 fL~~~ 86 (295)
||.+.
T Consensus 113 ~l~~~ 117 (119)
T 3b84_A 113 FKPKT 117 (119)
T ss_dssp CC---
T ss_pred HHHHc
Confidence 98763
No 8
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=98.45 E-value=2.6e-07 Score=73.24 Aligned_cols=72 Identities=18% Similarity=0.346 Sum_probs=61.4
Q ss_pred CcccHHHHHHcCCCCCCCccceeec--CCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLE--NFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKT 79 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~--dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~t 79 (295)
++|.|++.++...+ ...|.|+ |+ .+++|+.+.+|+|++++.+++.||..+..+|++++|.+ |....
T Consensus 43 a~S~yF~~~f~~~~----~~~i~l~~~~~--~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~------L~~~C 110 (116)
T 2vpk_A 43 SFSEYFGAIYRSTS----ENNVFLDQSQV--KADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEE------VVTKC 110 (116)
T ss_dssp HHCHHHHHHHTTCC----CSCEECCTTTC--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHH
T ss_pred hcCHHHHHHHcCCC----CCeEEeecCCC--CHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHH------HHHHH
Confidence 57999999998652 2356665 54 58999999999999999999999999999999999986 99999
Q ss_pred HHHhhh
Q 022577 80 EAFLTL 85 (295)
Q Consensus 80 e~fL~~ 85 (295)
+.||.+
T Consensus 111 ~~~l~~ 116 (116)
T 2vpk_A 111 KIKMED 116 (116)
T ss_dssp HHHHC-
T ss_pred HHHHhC
Confidence 999853
No 9
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=98.43 E-value=3.6e-07 Score=73.47 Aligned_cols=75 Identities=17% Similarity=0.302 Sum_probs=65.1
Q ss_pred CcccHHHHHHcCCCCCCCccceee-cCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKL-ENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l-~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te 80 (295)
++|.|+++++...... ....|.| +++ .+++|+.+-+|+|++++.+++.|+..|..+|++++|.+ |....+
T Consensus 50 a~S~~F~~~f~~~~~e-~~~~i~l~~~~--~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~------L~~~c~ 120 (127)
T 1r29_A 50 ACSGLFYSIFTDQLKR-NLSVINLDPEI--NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH------VVDTCR 120 (127)
T ss_dssp HHCHHHHHHHTSTTTT-TCSEEECCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHH
T ss_pred HhCHHHHHHhcCCccC-CCCEEEeCCCC--CHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence 5799999999864432 4567888 665 58999999999999999999999999999999999997 999999
Q ss_pred HHhhh
Q 022577 81 AFLTL 85 (295)
Q Consensus 81 ~fL~~ 85 (295)
.||.+
T Consensus 121 ~~l~~ 125 (127)
T 1r29_A 121 KFIKA 125 (127)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99865
No 10
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=98.39 E-value=2.4e-07 Score=74.07 Aligned_cols=70 Identities=19% Similarity=0.362 Sum_probs=61.2
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
++|.|++.++... ...|.++++ .+++|+.+-+|+|++++.+++.|+..+..+|++|+|.+ |....+.
T Consensus 48 a~S~yF~~~f~~~-----~~~i~l~~~--~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~------L~~~C~~ 114 (119)
T 2q81_A 48 ACSEYFKMLFVDQ-----KDVVHLDIS--NAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQD------IITACHA 114 (119)
T ss_dssp HHCHHHHHHHHHC-----CSGGGGGGC--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred HcCHHHHHHHcCC-----CCEEEeCCC--CHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHH------HHHHHHH
Confidence 4799999999852 345667655 58999999999999999999999999999999999997 9999999
Q ss_pred Hhh
Q 022577 82 FLT 84 (295)
Q Consensus 82 fL~ 84 (295)
|+.
T Consensus 115 ~l~ 117 (119)
T 2q81_A 115 LKS 117 (119)
T ss_dssp HHT
T ss_pred HHh
Confidence 885
No 11
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=98.37 E-value=3.3e-07 Score=76.08 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=62.5
Q ss_pred CcccHHHHHHcCCCCC--CCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHH
Q 022577 2 SKCGYIARLELQPSIS--NLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKT 79 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~--~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~t 79 (295)
++|.||+.++...... .....|.|+|++ +++|+.+.+|+|.+++.+++.|+..|..+|++++|.+ |....
T Consensus 68 a~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C 139 (144)
T 2ppi_A 68 AASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTD------LKTLC 139 (144)
T ss_dssp HHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHH------HHHHH
T ss_pred HcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 4799999999753211 145578888876 9999999999999999999999999999999999997 88888
Q ss_pred HHHh
Q 022577 80 EAFL 83 (295)
Q Consensus 80 e~fL 83 (295)
+.||
T Consensus 140 ~~~L 143 (144)
T 2ppi_A 140 CEFL 143 (144)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 8887
No 12
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=98.37 E-value=1.7e-07 Score=76.75 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=61.9
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
++|.|++.++.... ...|.|+|++ +++|+.+.+|+|+.++.+++.||..|..||++|+|.+ |....+.
T Consensus 46 a~S~yF~~mf~~~~----~~~i~l~~~~--~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C~~ 113 (135)
T 2yy9_A 46 CCSHFFQRIYGDGT----GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPE------AVELCQS 113 (135)
T ss_dssp HHCHHHHHTCC--------CCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred HhCHHHHHHHcCCC----CCeEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 47899999987532 3578888876 8999999999999999999999999999999999996 9999999
Q ss_pred Hhhhhh
Q 022577 82 FLTLVI 87 (295)
Q Consensus 82 fL~~~v 87 (295)
||.+..
T Consensus 114 ~l~~~l 119 (135)
T 2yy9_A 114 FQPQTS 119 (135)
T ss_dssp CCC---
T ss_pred HHHHhc
Confidence 997744
No 13
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=98.35 E-value=6.6e-07 Score=73.30 Aligned_cols=76 Identities=16% Similarity=0.287 Sum_probs=64.9
Q ss_pred CcccHHHHHHcCCCCCCCccceeec-CCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLE-NFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~-dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te 80 (295)
++|.||+.++..... +...|.++ ++ .+++|+.+.+|+|++++.+++.||..+..+|++|+|.+ |....+
T Consensus 57 a~S~yF~~~f~~~~~--e~~~i~l~~~v--~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~------L~~~C~ 126 (138)
T 2z8h_A 57 ACSSYFHSRIVGQTD--AELTVTLPEEV--TVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHN------IEESCF 126 (138)
T ss_dssp HHCHHHHHHHTTCCC--TTEEEECCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGG------GHHHHH
T ss_pred HcCHHHHHHHhcCCC--CCceEEeCCCC--CHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence 589999999986432 23467773 55 48999999999999999999999999999999999997 999999
Q ss_pred HHhhhhh
Q 022577 81 AFLTLVI 87 (295)
Q Consensus 81 ~fL~~~v 87 (295)
.||.+.+
T Consensus 127 ~~l~~~l 133 (138)
T 2z8h_A 127 QFLKFKF 133 (138)
T ss_dssp HHTTCCC
T ss_pred HHHHHhc
Confidence 9998754
No 14
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=98.34 E-value=1.7e-07 Score=75.92 Aligned_cols=73 Identities=23% Similarity=0.405 Sum_probs=56.8
Q ss_pred CcccHHHHHHcCCCCCCCccceeec-CCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLE-NFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~-dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te 80 (295)
++|.|+++++... ....|.|+ +++ +++|+.+.+|+|.+++++++.|+..+..||++|+|.+ |....+
T Consensus 54 a~S~~F~~~f~~~----~~~~i~l~~~~~--~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~------l~~~C~ 121 (129)
T 3ga1_A 54 ASSSYFRDLFNNS----RSAVVELPAAVQ--PQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQE------IMEKGT 121 (129)
T ss_dssp HHBHHHHHHHHHC----CCSEEECCTTCC--HHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTT------SSCC--
T ss_pred HcCHHHHHHHcCC----CCCEEEECCCCC--HHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence 4799999999864 23477775 664 8999999999999999999999999999999999997 778888
Q ss_pred HHhhhh
Q 022577 81 AFLTLV 86 (295)
Q Consensus 81 ~fL~~~ 86 (295)
.||.+.
T Consensus 122 ~~L~~~ 127 (129)
T 3ga1_A 122 EFFLKV 127 (129)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 888763
No 15
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=98.33 E-value=1.6e-07 Score=76.53 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=63.1
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
++|.||++++...........|.++|+ .+++|+.+.+|+|++++.+++.|+..+..+|++++|.+ |...++.
T Consensus 46 ~~S~~F~~~f~~~~~e~~~~~i~l~~~--~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~ 117 (145)
T 4eoz_A 46 ARSPVFSAMFEHEMEESKKNRVEINDV--EPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMCED 117 (145)
T ss_dssp HHCHHHHHHHHSSSHHHHHTEEEECSS--CHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHH------HHHHHHC
T ss_pred HcCHHHHHHHcCCCcCCCCceEEecCC--CHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHH------HHHHHHH
Confidence 579999999986432213457888886 48999999999999999999999999999999999997 9999999
Q ss_pred HhhhhhccChHHHHHHHhhhhcccchhhhhh
Q 022577 82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ 112 (295)
Q Consensus 82 fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~ 112 (295)
||.+.+- ...|-.++.+|+..+
T Consensus 118 ~l~~~l~---------~~n~~~~l~~A~~~~ 139 (145)
T 4eoz_A 118 ALCSNLS---------VENAAEILILADLHS 139 (145)
T ss_dssp C------------------------------
T ss_pred HHHHhCC---------HHHHHHHHHHHHHhC
Confidence 9987442 134555555655543
No 16
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=98.24 E-value=3.9e-07 Score=73.10 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=54.0
Q ss_pred CcccHHHHHHcCCCCCCCccceeecC-CCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCcc
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLEN-FPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~d-fPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE 68 (295)
++|.|+++++..... +...|.+++ + .+++|+.+.+|+|.+++.+++.||..+..+|++|+|.+
T Consensus 53 a~S~yF~~~f~~~~~--e~~~i~l~~~~--~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~ 116 (125)
T 3ohu_A 53 ACSEYFWQALVGQTK--NDLVVSLPEEV--TARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHN 116 (125)
T ss_dssp HHBHHHHHHHTTCCC--SSCEEECCTTC--CHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSS
T ss_pred HcCHHHHHHhcCCCC--CCcEEEeCCCC--CHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHH
Confidence 479999999986443 244677765 4 59999999999999999999999999999999999986
No 17
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=98.10 E-value=1.1e-06 Score=70.72 Aligned_cols=73 Identities=16% Similarity=0.282 Sum_probs=58.4
Q ss_pred CcccHHHHHHcCCCCCCCccceeec-CCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLE-NFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~-dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te 80 (295)
++|.|++.++..... +...|.++ ++ .+++|+.+-+|+|++++.+++.||..+..+|++++|.+ |....+
T Consensus 50 a~S~yF~~mf~~~~~--e~~~i~l~~~v--~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~------L~~~C~ 119 (124)
T 2ihc_A 50 ACSSYFHSRIVGQAD--GELNITLPEEV--TVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHN------IEESCF 119 (124)
T ss_dssp HHBHHHHHHHTTC-----CEEEECCTTS--CHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSS------CCGGGG
T ss_pred HcCHHHHHHHcCCCC--CCceEeecCCc--CHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHH------HHHHHH
Confidence 589999999986432 23467773 44 58999999999999999999999999999999999996 666666
Q ss_pred HHhh
Q 022577 81 AFLT 84 (295)
Q Consensus 81 ~fL~ 84 (295)
.||.
T Consensus 120 ~~l~ 123 (124)
T 2ihc_A 120 QFLK 123 (124)
T ss_dssp GTC-
T ss_pred HHHh
Confidence 6653
No 18
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=98.06 E-value=4.5e-06 Score=76.62 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=82.2
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~ 81 (295)
++|.|++.++...-......+|.|+|+ -|++|+..-+|+|+.++.++..|+..|..||++++|.. |...+|.
T Consensus 195 a~S~~F~~~f~~~~~e~~~~~i~l~~~--~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~ 266 (312)
T 3hqi_A 195 ARSPVFSAMFEHEMEESKKNRVEINDV--EPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMCED 266 (312)
T ss_dssp HHCHHHHHHTTC-----CCSEEEECSS--CHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred HcCHHHHHHhccCccccCCceEEecCC--CHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHH------HHHHHHH
Confidence 579999999976432224568999887 48999999999999999999999999999999999986 9999999
Q ss_pred HhhhhhccChHHHHHHHhhhhcccchhhhh---hhHHHHHHHHHHH
Q 022577 82 FLTLVILSSWKETITVLKSCKNLSPWAENL---QIVRRCCDSIAWK 124 (295)
Q Consensus 82 fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l---~iv~RCidsla~k 124 (295)
||.+.+-. ..|-.++.+|+.. .+.++|++-|+..
T Consensus 267 ~l~~~~~~---------~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 303 (312)
T 3hqi_A 267 ALCSNLSV---------ENAAEILILADLHSADQLKTQAVDFINYH 303 (312)
T ss_dssp HHHTTCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHccCCH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99865421 2344455566654 3788898887754
No 19
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=98.04 E-value=3e-06 Score=68.35 Aligned_cols=57 Identities=23% Similarity=0.273 Sum_probs=50.6
Q ss_pred cceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHHHhhh
Q 022577 21 YDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTL 85 (295)
Q Consensus 21 ~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~fL~~ 85 (295)
..|+|+|++ +++|+.+.+|+|++++.++..||..+..||++|+|.+ |....+.++.+
T Consensus 61 ~~i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~------l~~~C~~~~~~ 117 (119)
T 3m5b_A 61 QWALGEGIS--PSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQS------LEEACWRARGD 117 (119)
T ss_dssp EEECCSSCC--HHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHH------HHHHHHHHC--
T ss_pred CEEEeCCCC--HHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHH------HHHHHHHHHhh
Confidence 468888875 8999999999999999999999999999999999996 88888888765
No 20
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=97.98 E-value=4.8e-06 Score=66.44 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=53.4
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCcc-ccCCcchHHHhhhhhhhcCcc
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPI-AFNPNNIAPLRCASEFLDMSE 68 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i-~lt~~NVa~LrCAAe~LeMtE 68 (295)
++|.|++.++... ...|.+++++ +++|+.+.+|+|++++ .+++.|+..+..+|++++|..
T Consensus 52 a~S~~F~~~f~~~-----~~~i~l~~~~--~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~ 112 (116)
T 3fkc_A 52 ASSTYFHQLFSVA-----GQVVELSFIR--AEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKF 112 (116)
T ss_dssp HHCHHHHHHTTSC-----CSEEEECSSC--HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HcCHHHHHHHcCC-----CCEEEeCCCC--HHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccc
Confidence 5799999999863 3578888875 8999999999999999 799999999999999999974
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=96.84 E-value=0.0017 Score=50.34 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=47.5
Q ss_pred CcccHHHHHHcCCCCC--CCccceeecCCCCChHHHHHHHHHhc-----C---Cccc---cCCcchHHHhhhhhhhc
Q 022577 2 SKCGYIARLELQPSIS--NLGYDLKLENFPGGSETFEIILKFCY-----G---LPIA---FNPNNIAPLRCASEFLD 65 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~--~~~~~i~l~dfPGG~e~FEl~akFCY-----g---~~i~---lt~~NVa~LrCAAe~Le 65 (295)
..|++|+.++....+. +....|.|+++ .+.+++.+..||| . ..|. +++.|+--|-.||.||+
T Consensus 22 ~~S~~ik~m~~~~~~~~E~~~~~I~l~~V--~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 22 LTSGTIKAMLSGPGQFAENETNEVNFREI--PSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 96 (97)
T ss_dssp TTSHHHHHHHCCC--------CEEECTTS--CHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHhCCCccccCCCceECCCC--CHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhC
Confidence 4699999999864321 12446777765 4799999999999 4 5666 99999999999999997
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=96.82 E-value=0.00084 Score=56.64 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=62.1
Q ss_pred CcccHHHHHHcCCC-C-CCCccceeecCCCCChHHHHHHHHHhcCCc--------------------------cccCCcc
Q 022577 2 SKCGYIARLELQPS-I-SNLGYDLKLENFPGGSETFEIILKFCYGLP--------------------------IAFNPNN 53 (295)
Q Consensus 2 SrSg~l~rl~~~~~-~-~~~~~~i~l~dfPGG~e~FEl~akFCYg~~--------------------------i~lt~~N 53 (295)
+.|+||+.|+.... . ......|.|++++ +.+++.+..|||-.+ +.+++.|
T Consensus 21 ~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~--~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~ 98 (159)
T 2ast_A 21 KQSVTIKTMLEDLGMDDEGDDDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGT 98 (159)
T ss_dssp HTCHHHHHHTTSSCSS------CEECTTSC--HHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHH
T ss_pred HHhHHHHHHHHhcCCcccccCCCcCCCCcc--HHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHH
Confidence 46999999998632 1 1133467777764 579999999999544 7899999
Q ss_pred hHHHhhhhhhhcCccccCCCchHHHHHHHhhhhhc
Q 022577 54 IAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVIL 88 (295)
Q Consensus 54 Va~LrCAAe~LeMtE~~~~~NL~~~te~fL~~~v~ 88 (295)
+--|--||.||+|.. |+.-+-.|+...+-
T Consensus 99 l~eLl~AAnyL~I~~------Lld~~c~~va~~i~ 127 (159)
T 2ast_A 99 LFELILAANYLDIKG------LLDVTCKTVANMIK 127 (159)
T ss_dssp HHHHHHHHHHHTCHH------HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhHHH------HHHHHHHHHHHHHc
Confidence 999999999999996 99999999977654
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=94.93 E-value=0.025 Score=46.67 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=60.5
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCc--------------------------cccCCcchH
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLP--------------------------IAFNPNNIA 55 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~--------------------------i~lt~~NVa 55 (295)
..|++++.++.... ...|.|++++ +.+++.+..|||--+ +.++..++-
T Consensus 22 ~~S~~ik~ml~~~~----~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~ 95 (141)
T 1fs1_B 22 KQSVTIKTMLEDLG----MDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLF 95 (141)
T ss_dssp GTCHHHHHHHHHTC----CSSEECTTCC--HHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHH
T ss_pred HHhHHHHHHHHhcC----CCceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHH
Confidence 57999999998642 2367787764 579999999998422 678999999
Q ss_pred HHhhhhhhhcCccccCCCchHHHHHHHhhhhh
Q 022577 56 PLRCASEFLDMSEEYEDGNLISKTEAFLTLVI 87 (295)
Q Consensus 56 ~LrCAAe~LeMtE~~~~~NL~~~te~fL~~~v 87 (295)
-|--||.||+|.. |+.-+-.|+...+
T Consensus 96 eLi~AAnyL~I~~------Lldl~c~~vA~~i 121 (141)
T 1fs1_B 96 ELILAANYLDIKG------LLDVTCKTVANMI 121 (141)
T ss_dssp HHHHHHHHHTCHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhH------HHHHHHHHHHHHH
Confidence 9999999999985 9999988887755
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=94.66 E-value=0.011 Score=49.86 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=41.7
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCc---------------------------cccCCcch
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLP---------------------------IAFNPNNI 54 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~---------------------------i~lt~~NV 54 (295)
..|++|+.++.... ....|.|++++| .+++.+..|||--+ +.+++.++
T Consensus 24 ~~S~~ik~ml~~~~---~~~~Ipl~~V~~--~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l 98 (160)
T 2p1m_A 24 LESQTIAHMVEDDC---VDNGVPLPNVTS--KILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATL 98 (160)
T ss_dssp HTCTTTC---------------CCTTSCH--HHHHHHHHC----------------------------------------
T ss_pred HHhHHHHHHHHccC---CCCceeCCcCcH--HHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHH
Confidence 46889999987643 223677776654 89999999999533 57899999
Q ss_pred HHHhhhhhhhcCccccCCCchHHHHHHHhhhhhc
Q 022577 55 APLRCASEFLDMSEEYEDGNLISKTEAFLTLVIL 88 (295)
Q Consensus 55 a~LrCAAe~LeMtE~~~~~NL~~~te~fL~~~v~ 88 (295)
--|--||.||+|.. |+.-+-.|+...+-
T Consensus 99 ~eLi~AAnyL~I~~------Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 99 FELILAANYLNIKN------LLDLTCQTVADMIK 126 (160)
T ss_dssp --CHHHHHHTTCHH------HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHHc
Confidence 99999999999996 99999999977653
No 25
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=89.14 E-value=0.59 Score=39.67 Aligned_cols=78 Identities=8% Similarity=0.119 Sum_probs=54.5
Q ss_pred CcccHHHHHHcCCCCC----CCccceeecCCCCChHHHHHHHHHhcCCc-------------------------cccCCc
Q 022577 2 SKCGYIARLELQPSIS----NLGYDLKLENFPGGSETFEIILKFCYGLP-------------------------IAFNPN 52 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~----~~~~~i~l~dfPGG~e~FEl~akFCYg~~-------------------------i~lt~~ 52 (295)
..|+.|+.++...... .....|.|++++ +.+++.|..|||--+ +.+.+.
T Consensus 27 ~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~ 104 (169)
T 3v7d_A 27 ERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQE 104 (169)
T ss_dssp TTSHHHHHHHHC-----------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHH
T ss_pred HHhHHHHHHHHhcCcccccccCCCceeeCCCC--HHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHH
Confidence 4699999999865431 122567787765 689999999997311 346667
Q ss_pred chHHHhhhhhhhcCccccCCCchHHHHHHHhhhhh
Q 022577 53 NIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVI 87 (295)
Q Consensus 53 NVa~LrCAAe~LeMtE~~~~~NL~~~te~fL~~~v 87 (295)
.+--|-.||.||+|.. |+.-+=+++-.++
T Consensus 105 ~LfeLi~AAnyLdIk~------Lldl~c~~vA~~i 133 (169)
T 3v7d_A 105 MLYEIILAANYLNIKP------LLDAGCKVVAEMI 133 (169)
T ss_dssp HHHHHHHHHHHTTCHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHH------HHHHHHHHHHHHH
Confidence 7788899999999985 7777777665544
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=87.19 E-value=0.4 Score=36.93 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=44.3
Q ss_pred CcccHHHHHHcCCCC-C-CCccceeecCCCCChHHHHHHHHHhcCC-----------ccccCCcchHHHhhhhhhhcC
Q 022577 2 SKCGYIARLELQPSI-S-NLGYDLKLENFPGGSETFEIILKFCYGL-----------PIAFNPNNIAPLRCASEFLDM 66 (295)
Q Consensus 2 SrSg~l~rl~~~~~~-~-~~~~~i~l~dfPGG~e~FEl~akFCYg~-----------~i~lt~~NVa~LrCAAe~LeM 66 (295)
..|++++.++.+... . .....|.|++++ +.+++.+..|||-- ...+.+..+--|--||.||++
T Consensus 21 ~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 21 LTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp TTSHHHHHHHHCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHccCCcccccCCceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence 479999999987433 1 123467777654 57999999999721 136778888888899999874
No 27
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=81.78 E-value=0.82 Score=35.37 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=44.2
Q ss_pred CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCC--------------ccccCCcchHHHhhhhhhhcC
Q 022577 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGL--------------PIAFNPNNIAPLRCASEFLDM 66 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~--------------~i~lt~~NVa~LrCAAe~LeM 66 (295)
..|++++.++...- ......|.|++++ +.+++.+..|||-- ...+.+..+--|--||.||++
T Consensus 24 ~~S~~ik~ml~~~~-e~~~~~Iplp~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 24 MISPTLKAMIEGPF-RESKGRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp TTCHHHHHHHHSST-TTCTTEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred HHhHHHHHHHhccc-ccCCCceecCCcC--HHHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence 47999999998622 1123468887665 57999999999821 134666677778888988874
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=74.72 E-value=1.2 Score=35.27 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=42.9
Q ss_pred CcccHHHHHHcCCCCC--CCccceeecCCCCChHHHHHHHHHhcCC-----------ccccCCcchHHHhhhhhhhcC
Q 022577 2 SKCGYIARLELQPSIS--NLGYDLKLENFPGGSETFEIILKFCYGL-----------PIAFNPNNIAPLRCASEFLDM 66 (295)
Q Consensus 2 SrSg~l~rl~~~~~~~--~~~~~i~l~dfPGG~e~FEl~akFCYg~-----------~i~lt~~NVa~LrCAAe~LeM 66 (295)
..|+.++.++...... .....|-|++++ +.+++.|..|||=- ...+.+..+--|--||.||++
T Consensus 37 ~~S~tIk~ml~~~~~~~e~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 37 LTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp HTSHHHHHHSSCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHhcCCcccccCCceeCCCCC--HHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence 3689999999864331 123467777665 57999999999721 135667777788889999875
No 29
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=47.87 E-value=6.2 Score=23.68 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=14.5
Q ss_pred cchHHHhhhhhhhcCcc
Q 022577 52 NNIAPLRCASEFLDMSE 68 (295)
Q Consensus 52 ~NVa~LrCAAe~LeMtE 68 (295)
.||..|--||||||=.|
T Consensus 3 ~nvq~LLeAAeyLErrE 19 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRE 19 (26)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 48999999999998554
No 30
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=36.25 E-value=37 Score=22.22 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=31.2
Q ss_pred cccChHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHh
Q 022577 147 ATLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKKW 182 (295)
Q Consensus 147 ~~L~~~~f~rvi~am~~~g~-~~~~I~~~L~~Ya~k~ 182 (295)
..|+.++++++-...+..|+ ..++|-.+|..|..+.
T Consensus 14 vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~ 50 (55)
T 2k9i_A 14 VYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNH 50 (55)
T ss_dssp EEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 56889999999999999998 5789999999998764
No 31
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=33.81 E-value=28 Score=21.96 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=29.6
Q ss_pred cccChHHHHHHHHHHHHcCC-CchhHHHHHHHHHHH
Q 022577 147 ATLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKK 181 (295)
Q Consensus 147 ~~L~~~~f~rvi~am~~~g~-~~~~I~~~L~~Ya~k 181 (295)
..||.++++++=.-.+..|. ++++|..+|..|...
T Consensus 7 v~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 7 ITLSESVLENLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp EEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred EecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46888999999888888896 688999999999853
No 32
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.00 E-value=39 Score=25.54 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=28.1
Q ss_pred ccCCcchHHHhhhhhhhcCccccCCCchHHHHHHHhhh
Q 022577 48 AFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTL 85 (295)
Q Consensus 48 ~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~fL~~ 85 (295)
.|+|+|...++-.|+..+.++ |..++..|+.+
T Consensus 7 ~L~~~NCl~i~~~A~~~~~~~------L~~~a~~fi~~ 38 (105)
T 2eqx_A 7 GVQVGNCLQVMWLADRHSDPE------LYTAAKHCAKT 38 (105)
T ss_dssp CCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHH
Confidence 589999999999999888876 88999999865
No 33
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=21.99 E-value=1.2e+02 Score=23.03 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHhcCCccccCC-cchHHHhhhhhhhcCccccCCCchHHHHHHHh
Q 022577 30 GGSETFEIILKFCYGLPIAFNP-NNIAPLRCASEFLDMSEEYEDGNLISKTEAFL 83 (295)
Q Consensus 30 GG~e~FEl~akFCYg~~i~lt~-~NVa~LrCAAe~LeMtE~~~~~NL~~~te~fL 83 (295)
--|+.|+.+-.|-.++++.+.+ ..+..+.-.|+|.++++ |+...+.-+
T Consensus 56 Rdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~------L~~~l~~~i 104 (107)
T 3drz_A 56 RDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITS------LIKLVKDKI 104 (107)
T ss_dssp SCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHH------HHHHHHHHH
T ss_pred CChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHH------HHHHHHHHH
Confidence 5799999999999988876633 23457888999999986 776665543
No 34
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=21.70 E-value=78 Score=21.80 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=30.4
Q ss_pred cccChHHHHHHHHHHHHcCCC-chhHHHHHHHHHHH
Q 022577 147 ATLGIDHFMRIITTIKVKGTK-PEIIGKCIMHYAKK 181 (295)
Q Consensus 147 ~~L~~~~f~rvi~am~~~g~~-~~~I~~~L~~Ya~k 181 (295)
..|++++-+|+-..-..+|.+ +++|.++|..|+.+
T Consensus 18 vrId~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~ 53 (56)
T 2kel_A 18 IYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_dssp EEEEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 468899999998888889974 78999999999876
No 35
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=21.67 E-value=73 Score=27.79 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=36.4
Q ss_pred eeecCCCC-ChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCcc
Q 022577 23 LKLENFPG-GSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (295)
Q Consensus 23 i~l~dfPG-G~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE 68 (295)
=+|..+|| |+.|=+.+.-||+|..=.+-...++.-|....+++..+
T Consensus 139 ~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~~ 185 (228)
T 3s6i_A 139 ERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPK 185 (228)
T ss_dssp HHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSS
T ss_pred HHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCCC
Confidence 35678888 99999999999999764466667777788888877654
No 36
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=20.94 E-value=84 Score=20.47 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=29.9
Q ss_pred cccChHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHh
Q 022577 147 ATLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKKW 182 (295)
Q Consensus 147 ~~L~~~~f~rvi~am~~~g~-~~~~I~~~L~~Ya~k~ 182 (295)
..||-++.+++=...+..|. ++.+|-.++..|..+.
T Consensus 8 irl~~~l~~~l~~lA~~~~rs~s~lir~Ai~~yl~~~ 44 (52)
T 2gpe_A 8 VKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQL 44 (52)
T ss_dssp EEEEHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 35777888888888888886 6889999999999764
Done!