BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022578
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
Length = 378
Score = 449 bits (1156), Expect = e-126, Method: Compositional matrix adjust.
Identities = 210/260 (80%), Positives = 234/260 (90%), Gaps = 3/260 (1%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
MGGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGESDQ+FA+FSSKILHLKGDRKD
Sbjct: 59 MGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKD 118
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCET 120
YDFVKSSLSA+GFDVVYDINGREA+EVEPIL+ALP LEQ+IYCSSAGVYLKSD+LPHCE
Sbjct: 119 YDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEE 178
Query: 121 DTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP 180
D VDPKSRHKGKL TES+L+SKGVNWTS+RPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P
Sbjct: 179 DAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVP 238
Query: 181 GSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTGLLDFR 240
SGIQ++QLGHVKDLA AF+ VLGNEKASR++FNISGEKYVTFDGLA+ACAK G F
Sbjct: 239 NSGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGG---FP 295
Query: 241 SLNLCTTTPKSLTLVKRRLF 260
+ PK K++ F
Sbjct: 296 EPEIVHYNPKEFDFGKKKAF 315
>sp|Q9LYA9|CP41A_ARATH Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1
Length = 406
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 139/263 (52%), Gaps = 15/263 (5%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEF-SSKILHLKGDRKD 60
GG IG + ++ L+ GH VT+ T G ++++ F+E S + G+ +
Sbjct: 90 GGHAVIGFYFAKELLSAGHAVTILTVGDES-SEKMKKPPFNRFSEIVSGGGKTVWGNPAN 148
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPN--LEQFIYCSSAGVYLKSDLLPHC 118
V + + + FDVV D NG++ D V P++D + ++QF++ SSAG+Y ++ PH
Sbjct: 149 ---VANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHV 205
Query: 119 ETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 178
E D V + H + E L NW S RP Y+ G N EEWFF R+ R +P
Sbjct: 206 EGDAVKADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVP 262
Query: 179 IPGSGIQVTQLGHVKDLARAFVQVLGN-EKASRQVFNISGEKYVTFDGLARACAKVTGLL 237
IPGSG+Q+T + HV+DL+ + N E AS +FN ++ VT DG+A+ CA G
Sbjct: 263 IPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-- 320
Query: 238 DFRSLNLCTTTPKSLTLVKRRLF 260
+++ + PK++ + ++ F
Sbjct: 321 --KTVEIVHYDPKAIGVDAKKAF 341
>sp|Q45291|GALE_CORGL UDP-glucose 4-epimerase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=galE PE=3 SV=2
Length = 329
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 112/275 (40%), Gaps = 56/275 (20%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG ++G + +L++ GH VT+ + +P ++ ++GD
Sbjct: 7 GGAGYVGSVAAAVLLEHGHDVTIIDNFSTGNREAVPADARL-----------IEGDVN-- 53
Query: 62 DFVKSSLSAKGFDVVYDINGRE--ADEVE--------------PILDAL--PNLEQFIYC 103
D V+ LS GF+ V R + VE +LDA+ + ++
Sbjct: 54 DVVEEVLSEGGFEGVVHFAARSLVGESVEKPNEYWHDNVVTALTLLDAMRAHGVNNLVFS 113
Query: 104 SSAGVYLKSDLLPHCETDTVDPKSRHKG-KLNTESVLESK----GVNWTSLRPVYI---Y 155
S+A Y + D++P E P + + KL+ + + S G+ TSLR + Y
Sbjct: 114 STAATYGEPDVVPITEDMPTQPTNAYGATKLSIDYAITSYAAAFGLAATSLRYFNVAGAY 173
Query: 156 GPLNYN-PVEEWFF---------HRLKA---GRPIPIPGSGIQVTQLGHVKDLARAFVQV 202
G + N VE HR K G P P G V H+ DLA+A V
Sbjct: 174 GNIGENREVETHLIPLVLQVATGHREKTFMFGDDWPTP-DGTAVRDYIHILDLAKAHVLA 232
Query: 203 L-GNEKASRQVFNI-SGEKYVTFDGLARACAKVTG 235
L NE ++FN+ SG+ Y + + C +VTG
Sbjct: 233 LESNEAGKHRIFNLGSGDGY-SVKQVVEMCREVTG 266
>sp|P55579|Y4NG_RHISN Uncharacterized protein y4nG OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02350 PE=4 SV=1
Length = 396
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 27/245 (11%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILH-------L 54
GG+ + G LS+ L+++G V +F PG S IL L
Sbjct: 56 GGSGYFGELLSKQLLRQGTYVRVFDLNP-------PGFSHPNLEFLKGTILDRNAVRQAL 108
Query: 55 KGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILD--ALPNLEQFIYCSSAGVYLKS 112
G K + V AK D+ + +N + I+D +E+F+Y SS+ V+
Sbjct: 109 SGIDKVFHNVAQVPLAKEKDLFWSVN---CGGTQIIVDESVATGIEKFVYTSSSAVFGAP 165
Query: 113 DLLPHCETDTVDP-----KSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWF 167
P E +P +++ G++ + ++ G++ +RP + G V +
Sbjct: 166 KSNPVTEETEPNPAEDYGRAKLAGEIICKEAMQRDGLDVAIVRPRTVLG-YGRQGVVQIL 224
Query: 168 FHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLA 227
F ++ G IP+ G G Q H DLA A + + +NI ++ T L
Sbjct: 225 FDWVERGLDIPVLGGGNNKYQFVHSDDLASACIAA--SNVKGFATYNIGAAEFGTMRELL 282
Query: 228 RACAK 232
+ K
Sbjct: 283 QVVIK 287
>sp|P52577|IFRH_ARATH Isoflavone reductase homolog P3 OS=Arabidopsis thaliana
GN=At1g75280 PE=1 SV=1
Length = 310
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
+GGT +IG FL K GH R +A ++ + G++ Q F + ILH GD D
Sbjct: 11 IGGTGYIGKFLVEASAKAGHSTFALVR-EATLSDPVKGKTVQSFKDLGVTILH--GDLND 67
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCE- 119
++ + ++ K DVV G ILD + + +L S+ +
Sbjct: 68 HESLVKAI--KQVDVVISTVGSMQ-----ILDQTKIISAIKEAGNVKRFLPSEFGVDVDR 120
Query: 120 TDTVDP-KSRHKGKLNTESVLESKGVNWT 147
T V+P KS GK+ +E++G+ +T
Sbjct: 121 TSAVEPAKSAFAGKIQIRRTIEAEGIPYT 149
>sp|P33119|GALE_CORDI UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=galE PE=3 SV=2
Length = 328
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 111/283 (39%), Gaps = 68/283 (24%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPGESDQEFAEFSSKILHLK 55
GG ++G S +L+++GH+VT+ R P+ ++
Sbjct: 7 GGAGYVGSVCSTVLLEQGHEVTIVDNLTTGNRDAVPLGATF-----------------VE 49
Query: 56 GDRKDYDFVKSSLSAKGFDVVYDINGRE--ADEVE--------------PILDALP--NL 97
GD K D + LS+ FD V R + VE +LDA+ N+
Sbjct: 50 GDIK--DVADNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNV 107
Query: 98 EQFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKG-KLNTESVLES----KGVNWTSLRPV 152
++ S+A Y + + +P E P + + KL+ + + S G TSLR
Sbjct: 108 RNIVFSSTAATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYGFAATSLRYF 167
Query: 153 YI---YGPLNYNPVEEWFF----------HRLKA---GRPIPIPGSGIQVTQLGHVKDLA 196
+ YG + N E HR K G P G + H++DLA
Sbjct: 168 NVAGAYGLVGENREIETHLIPLVLQVALGHRDKIFMFGDDWPTE-DGTPIRDYIHIRDLA 226
Query: 197 RAFVQVL-GNEKASRQVFNI-SGEKYVTFDGLARACAKVTGLL 237
A + L N + S ++FN+ SGE Y + + C +VTG L
Sbjct: 227 DAHILALQSNVEGSHRIFNLGSGEGY-SVKQVIDTCREVTGHL 268
>sp|P39630|RMLB_BACSU dTDP-glucose 4,6-dehydratase OS=Bacillus subtilis (strain 168)
GN=rfbB PE=1 SV=1
Length = 315
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 52/270 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG+ ++L+++E T + + +L +A ++ LK + + +
Sbjct: 9 GGAGFIGLTFTKLMLRE-------TDARITVLDKLT------YASHPEEMEKLKQNSR-F 54
Query: 62 DFVKSSLSA-----KGFDVVYD--IN-------GREADEVEPIL-----------DAL-- 94
FVK +S + FD YD I+ R + EP + +A+
Sbjct: 55 RFVKGDISVQEDIDRAFDETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAVLK 114
Query: 95 PNLEQFIYCSSAGVY--LKSDLLPHCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPV 152
++ I+ S+ VY LK+D ET + P + + + +L V L +
Sbjct: 115 GKAKKLIHISTDEVYGDLKADDPAFTETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAI 174
Query: 153 YIYGPLNYNPVEE------WFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNE 206
NY P + K G P+P+ G G+Q+ +D RA +L E
Sbjct: 175 ITRCSNNYGPYQHSEKMIPTIIRHAKQGLPVPLYGDGLQIRDWLFAEDHCRAIKLIL--E 232
Query: 207 KASR-QVFNISGEKYVTFDGLARACAKVTG 235
K + +V+NI G T LA K G
Sbjct: 233 KGTDGEVYNIGGGNERTNKELASVILKHLG 262
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 33/209 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVT---LFTRGKAPIAQQLPGESDQEF--AEFSSKILH--L 54
G FIG L L+ +GH V F G+A + L S F A+ + LH L
Sbjct: 7 GAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTADLHAIL 66
Query: 55 KGDRKDYDF-------VKSSLSAKGFDVVYDING--READEVEPILDALPNLEQFIYCSS 105
+ R + F V+ S++ FD ++ G R A+ + + ++ SS
Sbjct: 67 EQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQT-----GVRKIVHTSS 121
Query: 106 AG-VYLKSDLLPHCETDTVDPKSRH-KGKLNTESVLES----KGVNWTSLRPVYIYGPLN 159
G +Y P ET DP S + GK+ E L + G++ + + P +YGP
Sbjct: 122 GGSIYGTPPEYPTPETAPTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPANVYGP-R 180
Query: 160 YNP-----VEEWFFHRLKAGRPIPIPGSG 183
+P V F L +G+P + G G
Sbjct: 181 QDPHGEAGVVAIFAQALLSGKPTRVFGDG 209
>sp|Q55C77|FCL_DICDI GDP-L-fucose synthase OS=Dictyostelium discoideum GN=ger PE=3 SV=1
Length = 320
Score = 38.1 bits (87), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 140 ESKGVNWTSLRPVYIYGPL-NYN----PVEEWFFHR----LKAGRPIPIPGSGIQVTQLG 190
E G +TS+ P IYGP NY+ V H+ +K + + I G+G + Q
Sbjct: 158 EEYGCKFTSVIPTNIYGPHDNYHLTDGHVIPGLIHKTYLAMKNNQDLTIMGTGKPLRQFI 217
Query: 191 HVKDLARAFVQVLGN-EKASRQVFNISGEKYVTFDGLARACAKVTGLLDFR 240
+ DLA+ FV L N E+ S + ++ E ++ +AR +T ++F+
Sbjct: 218 YSYDLAKYFVWTLNNYEEMSPLILSVGEEDEISIADVARL---ITEAMEFK 265
>sp|Q6P0H7|CBR4_DANRE Carbonyl reductase family member 4 OS=Danio rerio GN=cbr4 PE=2
SV=1
Length = 237
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP---IAQQLPGES 40
GG+R IG S+LL + GH++ L +R K AQ LPGE+
Sbjct: 9 GGSRGIGRAASKLLAQRGHRIVLLSRNKEAAQSTAQSLPGEN 50
>sp|Q331Q7|GERKI_STRSQ dTDP-4-dehydro-6-deoxyglucose reductase OS=Streptomyces sp.
GN=gerKI PE=1 SV=1
Length = 326
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 140 ESKGVNWTSLRPVYIYGP-----LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKD 194
E G N +RP +YGP + V + AG I I G G Q HV D
Sbjct: 176 EQFGTNVFLVRPGNVYGPGDGFDCSRGRVIPSMLAKADAGEEIEIWGDGSQTRSFVHVAD 235
Query: 195 LARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTG 235
L RA +++L E N++G + V+ LA V G
Sbjct: 236 LVRASLRLL--ETGKYPEMNVAGAEQVSILELAGMVMAVLG 274
>sp|P55584|Y4NL_RHISN Uncharacterized protein y4nL OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02300 PE=4 SV=1
Length = 356
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 118 CETDTVDPKSRH-KGKLNTESVLESKGVNWTSLRPVYIYGPLNYNP----VEEWFFHRLK 172
E DP + + + K+ E L ++ +++ V + P Y P + FF +K
Sbjct: 149 TEESPYDPHAGYGRSKMLMERALRAEVAAGSTMEIVIVRAPWFYGPNQPSRQTLFFKMVK 208
Query: 173 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAK 232
G+ PI GSG +G+ +LA+ + +E+A+ +F ++ E T + +
Sbjct: 209 EGK-FPIIGSGRNRRSMGYTDNLAQGILLAAVHERAAGDIFWLADETPYTMNEIIEVVGM 267
Query: 233 V 233
V
Sbjct: 268 V 268
>sp|Q67WR5|FCL2_ORYSJ Putative GDP-L-fucose synthase 2 OS=Oryza sativa subsp. japonica
GN=Os06g0652300 PE=3 SV=1
Length = 347
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 136 ESVLESKGVNWTSLRPVYIYGPLNYNPVEEWF--------FHR--LKAGRPIPIPGSGIQ 185
++V G++ + P +YGP + P E FHR L+ + + GSG
Sbjct: 180 QAVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAA 239
Query: 186 VTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTG 235
+ HV DLA A V VL + + N+ + VT LA A V G
Sbjct: 240 AREFTHVDDLAEAVV-VLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVG 288
>sp|P39631|SPSK_BACSU Spore coat polysaccharide biosynthesis protein SpsK OS=Bacillus
subtilis (strain 168) GN=spsK PE=3 SV=3
Length = 283
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)
Query: 7 IGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKS 66
+G+ L R L + G++V T+ IA Q F + I+ F
Sbjct: 13 LGLELCRQLKQAGYEVIALTKKMMNIADQR--SVRHSFGHYQPDIV-----VNSAAFTSV 65
Query: 67 SLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETDTVDPK 126
K D Y ING A L++ Q+++ S+ V+ P+ E D +DPK
Sbjct: 66 DQCEKELDKAYLINGIGA--YYTALESTRIGAQYVHISTDYVFNGKGTQPYREDDPLDPK 123
Query: 127 SRH-KGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQ 185
+ + K K E ++ + T +R ++YG N VE + + + + Q
Sbjct: 124 TIYGKSKRLGEELIRLTTKDSTIIRTSWVYGHGGSNFVET-MLKLAETKQELRVVSD--Q 180
Query: 186 VTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTGL 236
+ + KDLA A +++ + ++++S ++ A A + +GL
Sbjct: 181 IGSPTYTKDLAEAVIKLFSHPPG---IYHVSNSGICSWYEFATAIMEESGL 228
>sp|Q559Z0|NDUA9_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Dictyostelium discoideum GN=ndufa9 PE=3
SV=1
Length = 356
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 108/259 (41%), Gaps = 43/259 (16%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
G T F G +L +LL + G QV + P + G D + +I+ ++ D +D
Sbjct: 45 FGATGFTGRYLVQLLARTGIQVVV------PYRCEDEGFRDLKVLGELGQIIPVRFDIRD 98
Query: 61 YDFVKSSLSAKGFDVVYDINGREAD------------EVEPILDALPNLEQFIYCSSAGV 108
+ ++ ++S ++V ++ GR+ + I D N+E++I+ S+ +
Sbjct: 99 SESIERAISHS--NIVINMAGRDYETRNFSLDDINVHAASRIADLSKNVEKYIHVST--L 154
Query: 109 YLKSDLLPHCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFF 168
D H +S+ G+ T ++ N T +RP I+G E+ F
Sbjct: 155 RASEDSPSHFS------RSKAIGEKLTREIIP----NCTVVRPSIIFGD------EDKFI 198
Query: 169 HRL-KAGRPIP-IPGSGIQ-VTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDG 225
++ K + P IP Q Q H DLA + +L S +V+ +G++ T+D
Sbjct: 199 NKWSKVSQNWPFIPRYNQQHKIQPLHCYDLASGILSILETPGTSGKVYEFAGDEVFTWDE 258
Query: 226 LARACAKVTGLLDFRSLNL 244
+ G + LN+
Sbjct: 259 FLDMI--IDGTAQYSKLNI 275
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG 217
G+P+P+ G G+Q+ V+D ARA QV+ E + +NI G
Sbjct: 211 GKPLPVYGDGMQIRDWLFVEDHARALYQVV-TEGVVGETYNIGG 253
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 96 NLEQFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKGKLNTESVL-----ESKGVNWTSLR 150
++ +F++ S+ VY D E + P S + +L ++ G++ R
Sbjct: 119 HIGRFLHVSTDEVYGSIDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVVVTR 178
Query: 151 PVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKAS 209
YGP + + F RL G +P+ G G + HV D R LG +A
Sbjct: 179 CSNNYGPRQFPEKMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALALGAGRAG 238
Query: 210 RQVFNISG 217
+V++I G
Sbjct: 239 -EVYHIGG 245
>sp|Q31I61|MURD_THICR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Thiomicrospira
crunogena (strain XCL-2) GN=murD PE=3 SV=1
Length = 449
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%)
Query: 11 LSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSA 70
L + +V+ Q LF + KA IAQQLP E Q S +L K K D V S +
Sbjct: 358 LGQAVVQSCRQAILFGQDKAIIAQQLPQEKIQLVDTLSEAVLLAKTIAKSGDAVLFSPAC 417
Query: 71 KGFD 74
FD
Sbjct: 418 ASFD 421
>sp|P32055|FCL_ECOLI GDP-L-fucose synthase OS=Escherichia coli (strain K12) GN=fcl PE=1
SV=2
Length = 321
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 94/249 (37%), Gaps = 43/249 (17%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKVTG 235
A+ AKV G
Sbjct: 257 AQTIAKVVG 265
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG 217
G+P+P+ G G+Q+ V+D ARA QV+ E + +NI G
Sbjct: 211 GKPLPVYGDGMQIRDWLFVEDHARALYQVV-TEGVVGETYNIGG 253
>sp|O57314|DHB12_ANAPL Estradiol 17-beta-dehydrogenase 12 OS=Anas platyrhynchos
GN=HSD17B12 PE=2 SV=1
Length = 312
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD- 60
G T IG ++ L K G +V L +R K + Q+ GE +++ + I+ G+R+D
Sbjct: 55 GATDGIGKAYAKELAKRGMKVALISRSKEKL-DQVAGEITEQYGVETKVIVADFGEREDI 113
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFI 101
YD +++ L V+ + G E +D +P+L++ I
Sbjct: 114 YDRIRAGLEGLEIGVLVNNVGISYSYPEYFID-VPDLDKTI 153
>sp|Q17QH8|D39U1_BOVIN Epimerase family protein SDR39U1 OS=Bos taurus GN=SDR39U1 PE=2
SV=1
Length = 294
Score = 35.0 bits (79), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP 31
GGT FIG L++LL GH+VTL +R P
Sbjct: 7 GGTGFIGTALTQLLKARGHEVTLISRKPGP 36
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 97 LEQFIYCSSAGVY---LKSDLLPHCETDTVDP--KSRHKGKLNTESVLESKGVNWTSLRP 151
+E+FIY S+ VY L + +P S+ + +S E R
Sbjct: 134 VEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 152 VYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASR 210
+YGP Y V F L+ R I GSG+Q + D+ AF+ VL K
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPG- 252
Query: 211 QVFNI 215
+++NI
Sbjct: 253 EIYNI 257
>sp|P26391|RMLB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rfbB PE=1 SV=1
Length = 361
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG 217
G+P+PI G G Q+ +V+D ARA V+ KA + +NI G
Sbjct: 218 GKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAG-ETYNIGG 260
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 34.3 bits (77), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 173 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG 217
+G+P+P+ G G Q+ V+D ARA QV+ E + +NI G
Sbjct: 215 SGKPLPVYGDGAQIRDWLFVEDHARALYQVV-TEGVVGETYNIGG 258
>sp|P09147|GALE_ECOLI UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE
PE=1 SV=1
Length = 338
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFT------RGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>sp|O54067|LPSL_RHIME UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021)
GN=lspL PE=3 SV=2
Length = 341
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 98 EQFIYCSSAGVYLKSDLLPHCETDTVD------PKSRHKGKLNTESVLESKGVNWTSLRP 151
+ + S++ +Y ++ +P E D D ++ +L S V TS R
Sbjct: 120 KHLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRF 179
Query: 152 VYIYGPLNYNPVEEW-FFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQV 202
+YGP + + F + GRPI I G G ++ DL + V++
Sbjct: 180 FTVYGPWGRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRL 231
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 97 LEQFIYCSSAGVY---LKSDLLPHCETDTVDP--KSRHKGKLNTESVLESKGVNWTSLRP 151
+E+FIY S+ VY L + +P S+ + +S E R
Sbjct: 134 VEKFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 152 VYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASR 210
+YGP Y V F L+ R I G+G+Q + D+ AF+ VL K
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPG- 252
Query: 211 QVFNI 215
+++NI
Sbjct: 253 EIYNI 257
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 97 LEQFIYCSSAGVYLKSD---LLPHCETDTVDPKSRHKG-KLNTESVLESKGVNW----TS 148
+ +FI+ S+ VY ++D + + E + P + + K E ++ + G ++ +
Sbjct: 126 IRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 185
Query: 149 LRPVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEK 207
R +YGP + + F +G+P+PI G G V + +D+A AF VL +
Sbjct: 186 TRGNNVYGPNQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGE 245
Query: 208 ASRQVFNISGEKYVTFDGLARACAKVTG 235
V+N+ ++ +AR K+ G
Sbjct: 246 IG-HVYNVGTKRERRVIDVARDICKLFG 272
>sp|Q5E9H7|DHB12_BOVIN Estradiol 17-beta-dehydrogenase 12 OS=Bos taurus GN=HSD17B12 PE=2
SV=1
Length = 312
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD- 60
GGT IG + L K G ++ L +R + + Q+ E ++F + +K + + +D
Sbjct: 57 GGTDGIGKSYAEELAKRGMKIVLISRSQDKL-DQVSSEISEKF-KVETKTIAVDFTSEDI 114
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFI 101
YD +K+SL+ V+ + G + E LD +P+L+ I
Sbjct: 115 YDKIKASLAGLNIGVLVNNVGMSYEYPEYFLD-VPDLDNTI 154
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 25/139 (17%)
Query: 96 NLEQFIYCSSAGVYLK-----------SDLLPHCETDTVDPKSRHKGKLNTESVLESKGV 144
+++ F++ S++ VY + S L P+ T K H K +S G+
Sbjct: 117 SIQTFVFASTSSVYGEKQGKVSENTSLSPLSPYGVTKLTGEKLCHVYK-------QSFGI 169
Query: 145 NWTSLRPVYIYGPLNYNPVEEWFFHRLKAG----RPIPIPGSGIQVTQLGHVKDLARAFV 200
LR +YGP + FHRL +P+ I G G Q ++ D +
Sbjct: 170 PIVILRFFTVYGPRQR---PDMAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGIT 226
Query: 201 QVLGNEKASRQVFNISGEK 219
VLG + NI G +
Sbjct: 227 AVLGKPHLIGETVNIGGAE 245
>sp|Q9SK66|NDUA9_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=2
SV=2
Length = 402
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGK--APIAQQLPGESDQEFAEFSSKILHLKGDRK 59
G T F+G +L + L K G QV + RG +P +L G+ Q ++ +K D +
Sbjct: 75 GATGFLGRYLVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQ--------VVPMKFDPR 126
Query: 60 DYDFVKSSLSAKGFDVVYDINGRE 83
D D +K+ ++ +VV ++ GRE
Sbjct: 127 DEDSIKAVMAKA--NVVINLIGRE 148
>sp|P22715|GALE_SALTY UDP-glucose 4-epimerase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=galE PE=3 SV=2
Length = 338
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFT------RGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALIT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVV-----YDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ I+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVARPLEYYDNNVNGTLRLVSAMRAA-NVKNLIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>sp|Q7WTB1|GALE_LACHE UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2
SV=1
Length = 330
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQV----TLFT---RGKAPIAQQLPGESDQEFAEFSSKILH 53
+GG +IG R LVKEG+ V L+T + P A+ G+ + F SKIL
Sbjct: 6 IGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAVDPKAKFYQGDIEDTF--LVSKILR 63
Query: 54 LKGDRKDYDFVKSSL---SAKGFDVVYDINGREADEVEPILDAL--PNLEQFIYCSSAGV 108
+ F SL S K YD N + +L A+ N++ ++ SSA
Sbjct: 64 DEKIDAVMHFAAYSLVPESVKKPLKYYDNN---VTGMISLLQAMNDANVKYLVFSSSAAT 120
Query: 109 YLKSDLLPHCETDTVDPKSRH-KGKLNTESVL----ESKGVNWTSLRPVYIYG 156
Y LP E ++P + + + K+ E ++ ++ G+ +T+LR + G
Sbjct: 121 YGIPKKLPITEDTPLNPINPYGETKMMMEKIMAWADKADGIKYTALRYFNVAG 173
>sp|Q56093|GALE_SALTI UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2
Length = 338
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFT------RGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALIT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVV-----YDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ I+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVAKPLEYYDNNVNGTLRLVSAMRAA-NVKNLIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>sp|Q9W1X8|FCL_DROME Probable GDP-L-fucose synthase OS=Drosophila melanogaster GN=Gmer
PE=2 SV=1
Length = 321
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 146 WTSLRPVYIYGPL-NYNPVEE-------WFFHRL--------KAGRPIPIPGSGIQVTQL 189
+TS+ P I+GP NYNP + H+L + + + GSG+ + Q
Sbjct: 158 YTSVIPCNIFGPHDNYNPEVSHVIPGMIYRMHQLVTEKTDVPENDKVFTVFGSGMPLRQF 217
Query: 190 GHVKDLARAFVQVLGNEKASRQVFNISGE-KYVTFDGLARACAKVTGLLDFRSLNLCTTT 248
+ +DLA + VL N ++ + + E + VT +A+A AK +F +C T+
Sbjct: 218 VYSRDLAELMIWVLRNYESVEPIILSADEVQEVTIFEVAQAVAKA---FNFNGRLVCDTS 274
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 104 SSAGVYLKSDLLPHCETDTVDPKSRHKG--KLNTESVLESKGVNWTSLRPVYIYGPLNY- 160
+S G + S LLP +P S K ++ + S G+ + R +YGP +
Sbjct: 143 ASVGNHEASQLLP------TNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFP 196
Query: 161 NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKY 220
+ F G+P+PI G G V + +D+A AF VL + + V+NI +
Sbjct: 197 EKLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVN-HVYNIGTTRE 255
Query: 221 VTFDGLARACAKVTGL 236
+A +K+ G+
Sbjct: 256 RRVIDVANDISKLFGI 271
>sp|B0WSX1|MOCO2_CULQU Molybdenum cofactor sulfurase 2 OS=Culex quinquefasciatus GN=mal2
PE=3 SV=1
Length = 760
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 93 ALPNLEQFIYCSSAGVYLKSDLLPHCETDTVDPK-----SRHKGKLNTESVLESKGVNWT 147
AL N QF+ + A V +DL+P + + +P R +G L +SV + +WT
Sbjct: 624 ALSNQAQFLLINQASVRWLADLVPDWDDLSQEPTLESLVDRFRGNLIIDSVKPLEESSWT 683
Query: 148 SLRPVYIYGPLNYN 161
LR GPL ++
Sbjct: 684 QLR----IGPLEFS 693
>sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia
coli O111:H- PE=3 SV=1
Length = 334
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 97 LEQFIYCSSAGVYLKSDLLPHCETDTVD------PKSRHKGKLNTESVLESKGVNWTSLR 150
++ +Y SS+ VY + +P D+VD ++ +L + G+ T LR
Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177
Query: 151 PVYIYGPLNYNPVEEWFFHR-LKAGRPIPIPGSGIQVTQLGHVKDLARAFVQV 202
+YGP + + F + + G+ I + G ++ D+A A +++
Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 82/215 (38%), Gaps = 30/215 (13%)
Query: 14 LLVKEGHQVTLFTRGK---APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSA 70
L GH F RG AP + + G+ +++HL + V SL
Sbjct: 48 LAAVRGHPRYRFERGDICDAPGRRVMAGQD---------QVVHLAAE----SHVDRSLLD 94
Query: 71 KGFDVVYDINGREADEVEPILDALP--NLEQFIYCSSAGVYLKSDLLPHCETDTVDPKSR 128
V +++G + +LDA + F+ S+ VY + E + + P S
Sbjct: 95 ASVFVRTNVHG-----TQTLLDAATRHGVASFVQVSTDEVYGSLEHGSWTEDEPLRPNSP 149
Query: 129 HKGKLNTESVLE-----SKGVNWTSLRPVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGS 182
+ + +L S G++ R YGP + + F L G +P+ G
Sbjct: 150 YSASKASGDLLALAHHVSHGLDVRVTRCSNNYGPRQFPEKLIPRFITLLMDGHRVPLYGD 209
Query: 183 GIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISG 217
G+ V + HV D R V +A R V+NI G
Sbjct: 210 GLNVREWLHVDDHVRGIEAVRTRGRAGR-VYNIGG 243
>sp|P13395|SPTCA_DROME Spectrin alpha chain OS=Drosophila melanogaster GN=alpha-Spec PE=1
SV=2
Length = 2415
Score = 31.2 bits (69), Expect = 9.0, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 33 AQQLPGESDQEFAEFSSKILHLKGDRK---DYDFVKSSLSAKGFDVVYDINGREADEVEP 89
A+ G S+ EFS H D+ ++ KS L A G+D+ G+ E E
Sbjct: 2256 ARNHSGVSEDSLKEFSMMFKHFDKDKSGKLNHQEFKSCLRALGYDLPMVEEGQPDPEFEA 2315
Query: 90 ILDAL-PNLEQFI 101
ILD + PN + ++
Sbjct: 2316 ILDVVDPNRDGYV 2328
>sp|Q9M0B6|GAE1_ARATH UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1
SV=1
Length = 429
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 101 IYCSSAGVYLKSDLLPHCETDTVD------PKSRHKGKLNTESVLESKGVNWTSLRPVYI 154
++ SS+ VY ++ +P E+D D ++ G+ T + G+ T LR +
Sbjct: 210 VWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLAITGLRFFTV 269
Query: 155 YGPLNYNPVEEWFFHR-LKAGRPIPIPGSGIQVTQLGHVKDLARAFVQV 202
YGP + + F R + G+PI I +V DLAR F +
Sbjct: 270 YGPWGRPDMAYFSFTRNILQGKPITIYRGKNRV-------DLARDFTYI 311
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 78/215 (36%), Gaps = 45/215 (20%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
G FIG L L+ +GH V + A+ L AE S K +K D D
Sbjct: 7 GAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENL------HSAENSDKFEFVKADIVDA 60
Query: 62 DF--------------------VKSSLSAKGFDVVYDING--READEVEPILDALPNLEQ 99
D VK S+ FD ++ G R A+ L + +
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAAR-----LAGVRK 115
Query: 100 FIYCSSAG-VYLKSDLLPHCETDTVDPKSRHK-GKLNTESVLESK----GVNWTSLRPVY 153
++ SS G VY P E V+P S + GK+ E L ++ + + P
Sbjct: 116 VVHTSSGGSVYGTPPAYPTSEDMPVNPASPYAAGKVAGEVYLNMYRNLYDLDCSHIAPAN 175
Query: 154 IYGPLNYNP-----VEEWFFHRLKAGRPIPIPGSG 183
+YGP +P V F L AGR I G G
Sbjct: 176 VYGP-RQDPHGEAGVVAIFSEALLAGRTTKIFGDG 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,206,230
Number of Sequences: 539616
Number of extensions: 4599661
Number of successful extensions: 10883
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 10866
Number of HSP's gapped (non-prelim): 59
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)