BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022580
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSK
NQELFDELGFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRS
NLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVV
LIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELDSFGISI
IPSSLVSTYALLVEDVLEVVADIVVVHEAAASRVQRLTKVPLIHGEGGCHALSQI

High Scoring Gene Products

Symbol, full name Information P value
AT2G38570 protein from Arabidopsis thaliana 6.3e-53

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022580
        (295 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2064184 - symbol:AT2G38570 "AT2G38570" species...   548  6.3e-53   1


>TAIR|locus:2064184 [details] [associations]
            symbol:AT2G38570 "AT2G38570" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002685 InterPro:IPR011033
            SUPFAM:SSF50346 IPI:IPI00527655 RefSeq:NP_181391.4 UniGene:At.13130
            UniGene:At.66360 ProteinModelPortal:F4IT02 SMR:F4IT02 PRIDE:F4IT02
            EnsemblPlants:AT2G38570.1 GeneID:818439 KEGG:ath:AT2G38570
            OMA:FNINSGI Uniprot:F4IT02
        Length = 328

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 112/169 (66%), Positives = 134/169 (79%)

Query:   112 RG-RQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLL 170
             RG +Q   RSNL+AKQV+SIQSA+SLGF+SQLWVDTTSW+VLVV+V+P+LLSGE ER LL
Sbjct:   112 RGFKQSTTRSNLVAKQVVSIQSALSLGFISQLWVDTTSWLVLVVDVKPSLLSGESERFLL 171

Query:   171 EDICQVGDVVLIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVES 230
              DI +VGDVVL+++E+V++ +FKMV L+TLVGYRVVTPG +NIGKVRGY+FNINSG VES
Sbjct:   172 TDIVRVGDVVLVDNETVLDTEFKMVGLETLVGYRVVTPGGRNIGKVRGYSFNINSGIVES 231

Query:   231 LELDSFGISIIPSSLVSTYXXXXXXXXXXXXXXXXXXXXXXSRVQRLTK 279
             LELDSFG++IIPSSLVSTY                      SR QRLTK
Sbjct:   232 LELDSFGVTIIPSSLVSTYRLDVEDIIEVLQDIVVVQEDAASRKQRLTK 280


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      295       250   0.00080  114 3  11 22  0.45    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.62u 0.12s 17.74t   Elapsed:  00:00:01
  Total cpu time:  17.62u 0.12s 17.74t   Elapsed:  00:00:01
  Start:  Fri May 10 06:45:55 2013   End:  Fri May 10 06:45:56 2013

Back to top