BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022580
         (295 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
           PE=1 SV=1
          Length = 704

 Score = 34.3 bits (77), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 33/133 (24%)

Query: 40  NGSVRNGNLQYAMCT-----FKPPSKNQELFDEL----------------GFKDKFSVNS 78
           +GSV  G +QY  C+     F PPS+ Q L D L                GF+  FS  S
Sbjct: 526 DGSV--GGVQYFSCSPRYGIFAPPSRVQRLSDSLDTLSEISSNKQNHSYPGFRRSFSTTS 583

Query: 79  A---EENSREIAEVKEE---KREEEKDGSDGSSE-KVKLRRGRQVMRRSNLLAKQVISIQ 131
           A   +E +R  A  K +   +R      + G  E  VKL  G QV+  S   + ++ +++
Sbjct: 584 ASSQKEINRRNAFAKTKTTLRRSWSSSTTAGGLEGTVKLHEGSQVLLTS---SNEMATVR 640

Query: 132 SAMSLGFVSQLWV 144
                 F S +W+
Sbjct: 641 YVGPTDFASGIWL 653


>sp|Q7MUH6|UPPP_PORGI Undecaprenyl-diphosphatase OS=Porphyromonas gingivalis (strain ATCC
           BAA-308 / W83) GN=uppP PE=3 SV=1
          Length = 280

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 112 RGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVD---TTSWVVLVV 154
           +G++ M R +L  K +I++  A+ LGF+ + WVD    + WVV VV
Sbjct: 79  KGKEFMSRFDLYWKLLIALVPAVILGFLFEDWVDRMLGSVWVVAVV 124


>sp|B2RI95|UPPP_PORG3 Undecaprenyl-diphosphatase OS=Porphyromonas gingivalis (strain ATCC
           33277 / DSM 20709 / JCM 12257) GN=uppP PE=3 SV=1
          Length = 280

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 112 RGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVD---TTSWVVLVV 154
           +G++ M R +L  K +I++  A+ LGF+ + WVD    + WVV VV
Sbjct: 79  KGKEFMSRFDLYWKLLIALVPAVILGFLFEDWVDRMLGSVWVVAVV 124


>sp|A6MVT9|RBL_RHDSA Ribulose bisphosphate carboxylase large chain OS=Rhodomonas salina
           GN=rbcL PE=3 SV=1
          Length = 488

 Score = 32.0 bits (71), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 151 VLVVEVRPNL-LSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVGYRVVTPG 209
           +L   V+P L LSG+    ++ +  + G   L +DE++    F   +   L G   V   
Sbjct: 173 LLGATVKPKLGLSGKNYGRVVYEGLKGGLDFLKDDENINSQPFMRWKERFLFGMEGVNRA 232

Query: 210 RQNIGKVRGYTFNINSGAVESL 231
               G+++G+ FNI +G +E +
Sbjct: 233 AAGTGEIKGHYFNITAGTMEDM 254


>sp|Q54MC0|PIGW_DICDI Phosphatidylinositol-glycan biosynthesis class W protein
           OS=Dictyostelium discoideum GN=pigw PE=3 SV=2
          Length = 492

 Score = 32.0 bits (71), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 78  SAEENSREIAEVKEEKREEEKDGSDGSSEKVKL---------RRGRQVMRRSNLLAKQVI 128
           S +  S  I + +++KREEE+D +D  ++             ++ +QV+ RS+L+  QV 
Sbjct: 177 SRQSRSSLIEKQQKKKREEEEDDNDKINKTSSSSSSSSSALKQQQQQVLSRSSLMWHQVK 236

Query: 129 SIQSAMSLGFVSQLWVDTTSW 149
           +    M LGFV  +   + ++
Sbjct: 237 AQAPLMILGFVRMILTKSINY 257


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.132    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,989,119
Number of Sequences: 539616
Number of extensions: 4100329
Number of successful extensions: 20539
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 20383
Number of HSP's gapped (non-prelim): 139
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)