Query 022580
Match_columns 295
No_of_seqs 143 out of 394
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pm3_A MTH1895; unknown functi 99.5 7E-14 2.4E-18 111.4 8.3 76 107-183 11-94 (97)
2 1pm3_A MTH1895; unknown functi 99.1 4.1E-10 1.4E-14 89.6 8.0 74 195-268 21-95 (97)
3 3htr_A Uncharacterized PRC-bar 98.5 9.8E-08 3.4E-12 78.3 6.1 70 111-182 9-84 (120)
4 3htr_A Uncharacterized PRC-bar 97.9 2.5E-05 8.4E-10 64.0 7.9 72 193-267 13-85 (120)
5 1eys_H Photosynthetic reaction 96.7 0.0046 1.6E-07 57.1 8.1 40 197-237 148-187 (259)
6 1rzh_H Reaction center protein 96.7 0.0057 1.9E-07 56.5 8.6 61 197-267 145-206 (260)
7 2wjn_H Reaction center protein 96.5 0.008 2.7E-07 55.5 8.3 63 196-266 148-210 (258)
8 2wjn_H Reaction center protein 96.4 0.0048 1.6E-07 57.0 6.3 62 120-184 150-212 (258)
9 1rzh_H Reaction center protein 96.4 0.0073 2.5E-07 55.8 7.5 63 119-184 145-207 (260)
10 1eys_H Photosynthetic reaction 96.3 0.007 2.4E-07 55.9 7.1 62 119-183 148-212 (259)
11 3h9n_A Ribosome maturation fac 94.1 0.2 6.8E-06 43.2 8.5 67 166-235 59-132 (177)
12 2f1l_A 16S rRNA processing pro 91.8 0.22 7.5E-06 43.4 5.4 54 178-234 96-149 (187)
13 2dyi_A Probable 16S rRNA-proce 89.8 0.47 1.6E-05 40.3 5.5 53 178-234 72-124 (162)
14 2qgg_A 16S rRNA-processing pro 88.9 0.44 1.5E-05 41.1 4.8 54 178-234 87-144 (182)
15 2qgg_A 16S rRNA-processing pro 84.9 3.1 0.00011 35.7 8.0 65 117-184 104-178 (182)
16 3h9n_A Ribosome maturation fac 83.1 6.3 0.00021 33.6 9.1 68 117-186 95-169 (177)
17 2dyi_A Probable 16S rRNA-proce 75.8 3.9 0.00013 34.5 5.3 52 117-171 89-141 (162)
18 2lyx_A Uncharacterized protein 75.7 3 0.0001 32.5 4.2 29 206-234 55-83 (87)
19 2f1l_A 16S rRNA processing pro 72.1 6.1 0.00021 34.2 5.8 63 117-183 113-182 (187)
20 2ey4_C Small nucleolar RNP sim 58.3 7.4 0.00025 29.7 3.1 36 198-234 30-65 (82)
21 2hvy_B GAR1, small nucleolar R 55.2 10 0.00036 30.2 3.6 36 198-234 30-65 (104)
22 3u28_C H/ACA ribonucleoprotein 46.8 26 0.00091 28.4 4.8 38 197-235 49-86 (114)
23 3nqr_A Magnesium and cobalt ef 32.6 10 0.00034 28.7 0.2 73 143-217 41-116 (127)
24 3jtf_A Magnesium and cobalt ef 29.5 28 0.00095 26.3 2.3 73 143-217 43-116 (129)
25 3lfr_A Putative metal ION tran 28.0 20 0.0007 27.4 1.3 72 144-217 42-117 (136)
26 2eqn_A Hypothetical protein LO 27.0 55 0.0019 25.7 3.6 19 201-219 52-70 (103)
27 3gby_A Uncharacterized protein 27.0 18 0.00063 27.2 0.8 20 198-217 97-116 (128)
28 3lhh_A CBS domain protein; str 24.8 12 0.00042 30.1 -0.6 73 143-217 80-154 (172)
29 3oi8_A Uncharacterized protein 22.7 26 0.00087 27.6 0.9 74 142-217 75-150 (156)
30 3lv9_A Putative transporter; C 22.6 8.9 0.0003 29.8 -1.8 73 143-217 61-135 (148)
31 4exr_A Putative lipoprotein; Y 20.9 75 0.0026 26.9 3.5 98 124-235 60-174 (174)
32 1hy9_A Cocaine and amphetamine 20.7 43 0.0015 22.5 1.5 14 5-18 19-32 (41)
No 1
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=99.48 E-value=7e-14 Score=111.43 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=58.7
Q ss_pred ccccccccceeee-ccccCCeeEeccCcceeeeEeEEEEECCCCEEEEEEEcCCCC---CC--C-ceEEecccceeeC-c
Q 022580 107 KVKLRRGRQVMRR-SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLL---SG--E-PERLLLEDICQVG-D 178 (295)
Q Consensus 107 ~~~~~~~~~m~r~-SeLiGlpVIsi~tG~rLG~V~DL~vDp~~~rV~gLiV~~~~l---~~--~-~~~Ip~e~I~~IG-D 178 (295)
-+|+-++..||++ ++|.|++||+ .+|++||.|.|+.||+++++|.++++..+.| ++ . ...|||++|++|| |
T Consensus 11 ~~~~~~~~~~Mr~~seL~Gk~Vin-~dG~~LG~V~Dv~iD~~~G~I~~lvl~~~~~~~~~g~~~~~~~IPw~~V~~IG~d 89 (97)
T 1pm3_A 11 SSGLVPRGSHMRIVEEMVGKEVLD-SSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGDK 89 (97)
T ss_dssp ---------CEETTTTSSSCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESSS
T ss_pred cCCCCCCCeEEEeehhCCCCEeEC-CCCCEEeEEEEEEEECCCCEEEEEEEcCCCeeccccCCCeeEEEEhhHheEECCE
Confidence 3577788899999 9999999999 9999999999999999999999999988765 32 2 6799999999999 7
Q ss_pred EEEEe
Q 022580 179 VVLIE 183 (295)
Q Consensus 179 aIlV~ 183 (295)
+|+++
T Consensus 90 vIi~~ 94 (97)
T 1pm3_A 90 ILLKG 94 (97)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 77664
No 2
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=99.05 E-value=4.1e-10 Score=89.56 Aligned_cols=74 Identities=28% Similarity=0.308 Sum_probs=58.6
Q ss_pred ccc-ccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEcCCCccccCCCcccceeeehhhhhhccCcEEEEcc
Q 022580 195 VRL-DTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELDSFGISIIPSSLVSTYALLVEDVLEVVADIVVVHE 268 (295)
Q Consensus 195 ~~~-~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels~~G~~~ip~~~~sr~~Lp~e~IvsiG~D~VIV~e 268 (295)
-.+ .+|.|++|+|.+|+.||.|.|+.||+++|+|.+++++..++..+-..-...+.||++.|..+|+|+||+..
T Consensus 21 Mr~~seL~Gk~Vin~dG~~LG~V~Dv~iD~~~G~I~~lvl~~~~~~~~~g~~~~~~~IPw~~V~~IG~dvIi~~~ 95 (97)
T 1pm3_A 21 MRIVEEMVGKEVLDSSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGDKILLKGP 95 (97)
T ss_dssp EETTTTSSSCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESSSEEECCT
T ss_pred EEeehhCCCCEeECCCCCEEeEEEEEEEECCCCEEEEEEEcCCCeeccccCCCeeEEEEhhHheEECCEEEEEec
Confidence 345 79999999999999999999999999999999999988432100011112689999999999999998754
No 3
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=98.53 E-value=9.8e-08 Score=78.35 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=59.3
Q ss_pred ccccceeeeccccCCeeEeccCcceeeeEeEEEEECCCCEEEEEEEcCCCCCC---CceEEecccceeeC---cEEEE
Q 022580 111 RRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSG---EPERLLLEDICQVG---DVVLI 182 (295)
Q Consensus 111 ~~~~~m~r~SeLiGlpVIsi~tG~rLG~V~DL~vDp~~~rV~gLiV~~~~l~~---~~~~Ip~e~I~~IG---DaIlV 182 (295)
+....||+.++|+|++|++. +|+++|.|.|+++|..+|+|.+++|..++|++ +.-.|||++++ +. +.+.|
T Consensus 9 ~~~~~l~~~~~l~G~~V~~~-dG~~iG~V~dv~iD~~~G~i~~~vv~~GgflG~g~~~v~ip~~~l~-~~~~~~~~~v 84 (120)
T 3htr_A 9 NETLKLIGSDKVQGTAVYGP-DGEKIGSIERVMIEKVSGRVSYAVLSFGGFLGIGDDHYPLPWPALK-YNVELGGYQV 84 (120)
T ss_dssp CBCSSEEEHHHHTTCEEECT-TSCEEEEEEEEEEETTTCBEEEEEEEESSBTTBSCEEEEECGGGCE-EETTTTEEEC
T ss_pred cCCcceEehhhccCCEEEcC-CCCEEEEEEEEEEECCCCcEEEEEEECCCccCcCCEEEEeCHHHeE-EecCCCEEEe
Confidence 45667999999999999997 99999999999999999999999998887643 34689999996 43 46665
No 4
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=97.94 E-value=2.5e-05 Score=63.98 Aligned_cols=72 Identities=24% Similarity=0.192 Sum_probs=54.7
Q ss_pred cccccccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEcCCCccccCCCcccceeeehhhhh-hccCcEEEEc
Q 022580 193 KMVRLDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELDSFGISIIPSSLVSTYALLVEDVL-EVVADIVVVH 267 (295)
Q Consensus 193 ~l~~~~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels~~G~~~ip~~~~sr~~Lp~e~Iv-siG~D~VIV~ 267 (295)
.+-...+|.|++|++.+|+.||.|.|+.+|..+|+|.++.++-.|+..+- .....||+..+. .-..+.+.|.
T Consensus 13 ~l~~~~~l~G~~V~~~dG~~iG~V~dv~iD~~~G~i~~~vv~~GgflG~g---~~~v~ip~~~l~~~~~~~~~~v~ 85 (120)
T 3htr_A 13 KLIGSDKVQGTAVYGPDGEKIGSIERVMIEKVSGRVSYAVLSFGGFLGIG---DDHYPLPWPALKYNVELGGYQVM 85 (120)
T ss_dssp SEEEHHHHTTCEEECTTSCEEEEEEEEEEETTTCBEEEEEEEESSBTTBS---CEEEEECGGGCEEETTTTEEECC
T ss_pred ceEehhhccCCEEEcCCCCEEEEEEEEEEECCCCcEEEEEEECCCccCcC---CEEEEeCHHHeEEecCCCEEEeC
Confidence 45567899999999999999999999999999999999999874442111 123689999883 2244566663
No 5
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=96.67 E-value=0.0046 Score=57.12 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=37.6
Q ss_pred cccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEcCCC
Q 022580 197 LDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELDSFG 237 (295)
Q Consensus 197 ~~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels~~G 237 (295)
-.++.|.+|.+.+|+.+|+|.|+++|..+|+|..++++- |
T Consensus 148 ~~dl~G~~Vya~DGekIG~V~Dv~vD~~sG~VrYlVVdt-G 187 (259)
T 1eys_H 148 DPDPRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVEV-A 187 (259)
T ss_dssp SCCCTTCEEECSSSCEEEEEEEEEEETTTTEEEEEEEEE-T
T ss_pred CCCCcCCEEEeCCCCeeEEEEEEEEECCCCeEEEEEEEc-C
Confidence 367999999999999999999999999999999999988 5
No 6
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=96.66 E-value=0.0057 Score=56.53 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=48.2
Q ss_pred cccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEcCCCccccCCCcccc-eeeehhhhhhccCcEEEEc
Q 022580 197 LDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELDSFGISIIPSSLVST-YALLVEDVLEVVADIVVVH 267 (295)
Q Consensus 197 ~~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels~~G~~~ip~~~~sr-~~Lp~e~IvsiG~D~VIV~ 267 (295)
-.++.|.+|...+|+.+|+|.|++||..+|.|-.++++- | .++ ..| +-....+..+.+-|.
T Consensus 145 ~~d~~G~~Vyg~DGe~iGsV~Dl~VD~~eg~VRYLVVdt-G--------ggrkVLL-P~~~~riD~~~VyV~ 206 (260)
T 1rzh_H 145 GKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVEL-K--------DGSTRLL-PMQMVKVQSNRVHVN 206 (260)
T ss_dssp SCCCTTCEEEETTSCEEEEEEEEEEETTTTEEEEEEEEC-T--------TSCEEEE-EGGGCEECSSCEEES
T ss_pred CCCCCCCEeEcCCCCeeEEEEEEEEECCCCEEEEEEEEe-C--------CCCEEEe-eeEEEEEcCCeEEEe
Confidence 578999999999999999999999999999999999987 4 133 344 444545555777773
No 7
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=96.46 E-value=0.008 Score=55.49 Aligned_cols=63 Identities=22% Similarity=0.141 Sum_probs=49.0
Q ss_pred ccccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEcCCCccccCCCcccceeeehhhhhhccCcEEEE
Q 022580 196 RLDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELDSFGISIIPSSLVSTYALLVEDVLEVVADIVVV 266 (295)
Q Consensus 196 ~~~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels~~G~~~ip~~~~sr~~Lp~e~IvsiG~D~VIV 266 (295)
+-.++.|.+|...+|+.+|+|.|++||..+|.|-.++++- |. .+++.|=+-....+..+.+-|
T Consensus 148 ~~~D~~G~~Vyg~DGe~iGsV~Dl~VD~~eg~VRYLVVdt-Gg-------ggrkVLLP~~~~riD~~~VyV 210 (258)
T 2wjn_H 148 GDVDPRGLPVVAADGVEAGTVTDLWVDRSEHYFRYLELSV-AG-------SARTALIPLGFCDVKKDKIVV 210 (258)
T ss_dssp TSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEEE-TT-------TTEEEEEEGGGCEECSSCEEC
T ss_pred CCCCCCCCEeEcCCCCeeEEEEEEEEECCCCEEEEEEEEc-CC-------CCCEEEeeeEEEEEcCCeEEE
Confidence 3578999999999999999999999999999999999987 32 234333345555555577777
No 8
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=96.40 E-value=0.0048 Score=56.99 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=50.8
Q ss_pred ccccCCeeEeccCcceeeeEeEEEEECCCCEEEEEEEcCCCCCCCceEEecccceeeC-cEEEEec
Q 022580 120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLIED 184 (295)
Q Consensus 120 SeLiGlpVIsi~tG~rLG~V~DL~vDp~~~rV~gLiV~~~~l~~~~~~Ip~e~I~~IG-DaIlV~~ 184 (295)
.++.|.+|... +|+++|.|+|+|||..+++|..++++-++ ++++.-|||.-.+ |. +.|.|.+
T Consensus 150 ~D~~G~~Vyg~-DGe~iGsV~Dl~VD~~eg~VRYLVVdtGg-ggrkVLLP~~~~r-iD~~~VyV~~ 212 (258)
T 2wjn_H 150 VDPRGLPVVAA-DGVEAGTVTDLWVDRSEHYFRYLELSVAG-SARTALIPLGFCD-VKKDKIVVTS 212 (258)
T ss_dssp CCCTTCEEECT-TSCEEEEEEEEEEETTTTEEEEEEEEETT-TTEEEEEEGGGCE-ECSSCEECCS
T ss_pred CCCCCCEeEcC-CCCeeEEEEEEEEECCCCEEEEEEEEcCC-CCCEEEeeeEEEE-EcCCeEEEec
Confidence 47889999975 89999999999999999999999998877 5666678887554 44 6777743
No 9
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=96.38 E-value=0.0073 Score=55.80 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=50.9
Q ss_pred eccccCCeeEeccCcceeeeEeEEEEECCCCEEEEEEEcCCCCCCCceEEecccceeeCcEEEEec
Q 022580 119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIED 184 (295)
Q Consensus 119 ~SeLiGlpVIsi~tG~rLG~V~DL~vDp~~~rV~gLiV~~~~l~~~~~~Ip~e~I~~IGDaIlV~~ 184 (295)
-.++.|.+|... +|+++|.|+|+|||..+++|..++++-+ ++++.-|||.-.+-=.+.|.|.+
T Consensus 145 ~~d~~G~~Vyg~-DGe~iGsV~Dl~VD~~eg~VRYLVVdtG--ggrkVLLP~~~~riD~~~VyV~~ 207 (260)
T 1rzh_H 145 GKNPIGLPVRGC-DLEIAGKVVDIWVDIPEQMARFLEVELK--DGSTRLLPMQMVKVQSNRVHVNA 207 (260)
T ss_dssp SCCCTTCEEEET-TSCEEEEEEEEEEETTTTEEEEEEEECT--TSCEEEEEGGGCEECSSCEEESS
T ss_pred CCCCCCCEeEcC-CCCeeEEEEEEEEECCCCEEEEEEEEeC--CCCEEEeeeEEEEEcCCeEEEec
Confidence 346789999975 8999999999999999999999999887 56667888875543227777743
No 10
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=96.32 E-value=0.007 Score=55.90 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=50.9
Q ss_pred eccccCCeeEeccCcceeeeEeEEEEECCCCEEEEEEEcCCCCCCCceEEecccceeeC-c--EEEEe
Q 022580 119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-D--VVLIE 183 (295)
Q Consensus 119 ~SeLiGlpVIsi~tG~rLG~V~DL~vDp~~~rV~gLiV~~~~l~~~~~~Ip~e~I~~IG-D--aIlV~ 183 (295)
-+++.|..|.+ .+|+++|.|+|++||..+|+|..++|+.+ ++++...+|+ .+.+|- | .|.|.
T Consensus 148 ~~dl~G~~Vya-~DGekIG~V~Dv~vD~~sG~VrYlVVdtG-~ggkkVLiPi-~~~~Id~d~~~V~V~ 212 (259)
T 1eys_H 148 DPDPRGMTVVG-LDGEVAGTVSDVWVDRSEPQIRYLEVEVA-ANKKKVLLPI-GFSRFDKKARKVKVD 212 (259)
T ss_dssp SCCCTTCEEEC-SSSCEEEEEEEEEEETTTTEEEEEEEEET-TTCCEEEEEG-GGCEEEGGGTEEECS
T ss_pred CCCCcCCEEEe-CCCCeeEEEEEEEEECCCCeEEEEEEEcC-CCCCcEEEec-ChhhccccCCEEEEc
Confidence 36789999997 58999999999999999999999999988 6565557886 466666 3 67773
No 11
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=94.10 E-value=0.2 Score=43.15 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=43.2
Q ss_pred eEEecccceee-------CcEEEEecCCcccccccccccccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEcC
Q 022580 166 ERLLLEDICQV-------GDVVLIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELDS 235 (295)
Q Consensus 166 ~~Ip~e~I~~I-------GDaIlV~~~~~v~~~~~l~~~~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels~ 235 (295)
-.+-++.|..+ |-.++|+.+....-..+-.-+.+|+|++|++++|+.||+|.|+ ++ ||.=.=|++..
T Consensus 59 ~lvkf~gi~dr~~Ae~L~G~~l~v~~~~lp~l~edE~Y~~dLiGl~V~~~~g~~lG~V~~v-~~--~gandvl~V~~ 132 (177)
T 3h9n_A 59 IIVKLKGVDDREAAQILANVEIGVDLSVFPELEEGDYYWHDLIGCTVVNLEGYTMGTVTEM-ME--TGSNDVLVVKA 132 (177)
T ss_dssp EEEEESSCCSHHHHHTTTTCEEEEECCCCCCCSSSCGGGGGTTTCEEEETTCCEEEEEEEE-EE--SSSCEEEEEEC
T ss_pred EEEEEcCCCCHHHHHHhcCCEEEEEHHHCCCCCCCCCCHHHhcCCEEEeCCCCEEEEEEEE-ee--CCCcEEEEEEe
Confidence 35555555433 2357777655432122334578999999999999999999999 44 45434455543
No 12
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=91.77 E-value=0.22 Score=43.44 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=34.4
Q ss_pred cEEEEecCCcccccccccccccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEc
Q 022580 178 DVVLIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELD 234 (295)
Q Consensus 178 DaIlV~~~~~v~~~~~l~~~~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels 234 (295)
-.++|..+....-..+-.-+.+|+|++|++++|+.||+|.|+. +||.=.=|++.
T Consensus 96 ~~l~v~r~~lp~l~edEfY~~DLIGl~V~~~~g~~lG~V~~v~---~~ganDvlvV~ 149 (187)
T 2f1l_A 96 YEICIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLL---ETGANDVMVVK 149 (187)
T ss_dssp CEEEEEGGGSCC-----CCHHHHTTCEEEETTSCEEEEEEEEE---CCSSSCEEEEE
T ss_pred CEEEEEHHHCCCCCCCCEeHHHcCCeEEEeCCCCEEEEEEEEc---cCCCcEEEEEE
Confidence 3567765544221112235689999999999999999999995 45533334443
No 13
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=89.77 E-value=0.47 Score=40.26 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=34.6
Q ss_pred cEEEEecCCcccccccccccccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEc
Q 022580 178 DVVLIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELD 234 (295)
Q Consensus 178 DaIlV~~~~~v~~~~~l~~~~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels 234 (295)
-.++|+.+....-..+-.-+++|+|++|+ ++|+.||+|.|+. + ||.=.=|++.
T Consensus 72 ~~l~v~~~~lp~l~e~e~y~~dLiGl~V~-~~g~~lG~V~~v~-~--~ga~dvl~V~ 124 (162)
T 2dyi_A 72 LRVYAEVADLPPLEEGRYYYFALIGLPVY-VEGRQVGEVVDIL-D--AGAQDVLIIR 124 (162)
T ss_dssp CEEEEEGGGSCCCCTTCCCHHHHTTCEEE-ETTEEEEEEEEEE-E--ETTEEEEEEE
T ss_pred CEEEEEHHHCCCCCCCcEeHHHhCCeEEE-ECCeEEEEEEEEc-c--CCCceEEEEE
Confidence 35666655442211222346899999999 9999999999995 4 5543334443
No 14
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=88.92 E-value=0.44 Score=41.15 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=35.8
Q ss_pred cEEEEecCCcccccccccccccccCCEEEcC----CCceeEEEEEEEEEcCCccEEEEEEc
Q 022580 178 DVVLIEDESVMENDFKMVRLDTLVGYRVVTP----GRQNIGKVRGYTFNINSGAVESLELD 234 (295)
Q Consensus 178 DaIlV~~~~~v~~~~~l~~~~~LiG~~ViTe----~G~~LG~V~Dv~FD~~TG~I~~yels 234 (295)
-.++|..+....-..+-.-+++|+|++|++. +|+.||+|.|+. + ||.=.=|++.
T Consensus 87 ~~l~v~~~~lp~l~ede~Y~~dLiGl~V~~~~~~~~g~~lG~V~~v~-~--~gandvl~V~ 144 (182)
T 2qgg_A 87 SNIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDEEQEVNLGQIHELF-E--TGANDVMVVR 144 (182)
T ss_dssp CEEEEETTCCCCCHHHHCCHHHHTTCEEEEECTTSCEEEEEEEEEEE-E--CSSCEEEEEE
T ss_pred CEEEEEHHHCCCCCCCcEeHHHhCCcEEEEcccCCCCcEEEEEEEEc-c--CCCcEEEEEE
Confidence 3567766544221112235689999999998 999999999995 4 5543344554
No 15
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=84.94 E-value=3.1 Score=35.70 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=43.6
Q ss_pred eeeccccCCeeEecc---CcceeeeEeEEEEECCCCEEEEEEEcCCC-CCC-CceEEecc-c-ceeeC-c--EEEEec
Q 022580 117 MRRSNLLAKQVISIQ---SAMSLGFVSQLWVDTTSWVVLVVEVRPNL-LSG-EPERLLLE-D-ICQVG-D--VVLIED 184 (295)
Q Consensus 117 ~r~SeLiGlpVIsi~---tG~rLG~V~DL~vDp~~~rV~gLiV~~~~-l~~-~~~~Ip~e-~-I~~IG-D--aIlV~~ 184 (295)
.=..||+|+.|++.. +|..||+|.++. +...+-|.-+ +... -.+ +...||++ + |..|- + .|+|+-
T Consensus 104 ~Y~~dLiGl~V~~~~~~~~g~~lG~V~~v~-~~gandvl~V--~~~~~~~g~ke~LIPf~~~~V~~VDl~~~~I~v~~ 178 (182)
T 2qgg_A 104 YYWSDLKGLTVLGLDDEEQEVNLGQIHELF-ETGANDVMVV--RATPDSIDSEERMIPWHKDVVQRVDLEAGRIYVNW 178 (182)
T ss_dssp CCHHHHTTCEEEEECTTSCEEEEEEEEEEE-ECSSCEEEEE--ECCSSSSSSCCEEEECCTTTEEEEETTTTEEEESC
T ss_pred EeHHHhCCcEEEEcccCCCCcEEEEEEEEc-cCCCcEEEEE--EeccCCCCCeEEEeecChhhEeEEECCCCEEEEeC
Confidence 446799999999863 789999999995 6666777544 3200 113 56789993 2 55665 3 666653
No 16
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=83.14 E-value=6.3 Score=33.64 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=45.0
Q ss_pred eeeccccCCeeEeccCcceeeeEeEEEEECCCCEEEEEEEcCC-CCCCCceEEecc--c-ceeeC-c--EEEEecCC
Q 022580 117 MRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-LLSGEPERLLLE--D-ICQVG-D--VVLIEDES 186 (295)
Q Consensus 117 ~r~SeLiGlpVIsi~tG~rLG~V~DL~vDp~~~rV~gLiV~~~-~l~~~~~~Ip~e--~-I~~IG-D--aIlV~~~~ 186 (295)
.=..||+|+.|++ .+|..+|+|.++ ++...+-|.-+..... ...++...||+- + |..|- + .|+|+-.+
T Consensus 95 ~Y~~dLiGl~V~~-~~g~~lG~V~~v-~~~gandvl~V~~~~~~~~~~~e~LIP~v~~~~V~~VDl~~~~I~v~~p~ 169 (177)
T 3h9n_A 95 YYWHDLIGCTVVN-LEGYTMGTVTEM-METGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDA 169 (177)
T ss_dssp GGGGGTTTCEEEE-TTCCEEEEEEEE-EESSSCEEEEEECCTTCTTCCSEEEEECCBTTTEEEEEGGGTEEEECCCS
T ss_pred CCHHHhcCCEEEe-CCCCEEEEEEEE-eeCCCcEEEEEEeccccCCCCcEEEeeccchheEEEEeCCCCEEEEECCc
Confidence 4578999999997 469999999998 5665666654432111 112456799994 3 44565 3 67776543
No 17
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=75.83 E-value=3.9 Score=34.48 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=34.4
Q ss_pred eeeccccCCeeEeccCcceeeeEeEEEEECCCCEEEEEEEcCCC-CCCCceEEecc
Q 022580 117 MRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNL-LSGEPERLLLE 171 (295)
Q Consensus 117 ~r~SeLiGlpVIsi~tG~rLG~V~DL~vDp~~~rV~gLiV~~~~-l~~~~~~Ip~e 171 (295)
.=..||+|+.|+ .+|+.+|+|.++. +...+-|.-+.-..+. ...+...||+-
T Consensus 89 ~y~~dLiGl~V~--~~g~~lG~V~~v~-~~ga~dvl~V~~~~g~~~~~~e~LIPfv 141 (162)
T 2dyi_A 89 YYYFALIGLPVY--VEGRQVGEVVDIL-DAGAQDVLIIRGVGERLRDRAERLVPLQ 141 (162)
T ss_dssp CCHHHHTTCEEE--ETTEEEEEEEEEE-EETTEEEEEEEECCSSGGGSTTEEEETT
T ss_pred EeHHHhCCeEEE--ECCeEEEEEEEEc-cCCCceEEEEEeCCCCcCcCcEEEEecc
Confidence 346899999999 7899999999996 5545666544322210 00045678873
No 18
>2lyx_A Uncharacterized protein YQZG; PF13028, DUF3889, structural genomics, unknown function; NMR {Bacillus subtilis subsp}
Probab=75.73 E-value=3 Score=32.49 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=26.3
Q ss_pred EcCCCceeEEEEEEEEEcCCccEEEEEEc
Q 022580 206 VTPGRQNIGKVRGYTFNINSGAVESLELD 234 (295)
Q Consensus 206 iTe~G~~LG~V~Dv~FD~~TG~I~~yels 234 (295)
+.++|+..|...+++|++.|++|..+.+-
T Consensus 55 l~e~~kefgV~V~I~f~p~T~kv~sI~~~ 83 (87)
T 2lyx_A 55 LREGSKEFGVFVTISFDPYSQKVNKIAIL 83 (87)
T ss_dssp EEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred EEeCCEEEEEEEEEEEECCCCeEEEEEEE
Confidence 45889999999999999999999999875
No 19
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=72.14 E-value=6.1 Score=34.18 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=40.0
Q ss_pred eeeccccCCeeEeccCcceeeeEeEEEEECCCCEEEEEEEcCCCC--CCCceEEeccc--ceeeC-c--EEEEe
Q 022580 117 MRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLL--SGEPERLLLED--ICQVG-D--VVLIE 183 (295)
Q Consensus 117 ~r~SeLiGlpVIsi~tG~rLG~V~DL~vDp~~~rV~gLiV~~~~l--~~~~~~Ip~e~--I~~IG-D--aIlV~ 183 (295)
.=..||+|+.|++ .+|+.||+|.++. +...+-|.- |+...- ..+...||+-. |..|- + .|+|+
T Consensus 113 fY~~DLIGl~V~~-~~g~~lG~V~~v~-~~ganDvlv--V~~~~g~~~~ke~LIPfv~~~V~~VDle~~~I~V~ 182 (187)
T 2f1l_A 113 YYWHQLEGLKVID-QGRQLLGVIDHLL-ETGANDVMV--VKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVD 182 (187)
T ss_dssp CCHHHHTTCEEEE-TTSCEEEEEEEEE-CCSSSCEEE--EECCTTSSSSCCEEEECSTTTEEEEETTTTEEEEC
T ss_pred EeHHHcCCeEEEe-CCCCEEEEEEEEc-cCCCcEEEE--EEeCCCCCCCcEEEEechHHhcCEEeCCCCEEEEe
Confidence 4467999999997 4688999999996 555566644 433220 01467889842 33444 2 45554
No 20
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=58.29 E-value=7.4 Score=29.70 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=25.6
Q ss_pred ccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEc
Q 022580 198 DTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELD 234 (295)
Q Consensus 198 ~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels 234 (295)
..-+|.+|++++++++|+|.|+ |=|-..-=..+..+
T Consensus 30 ~P~~na~Vy~e~~~~IGkV~dI-fGPv~~pY~sVk~~ 65 (82)
T 2ey4_C 30 VPSLNDRVVDKRLQFVGIVKDV-FGPVKMPYVAIKPK 65 (82)
T ss_dssp CCCTTCEEECTTCCCCEEEEEE-EEESSSCEEEEEEC
T ss_pred CCCCCCEeEcCCCCEeEEEEEE-ECCCCCcEEEEEeC
Confidence 3458999999999999999999 54444433333433
No 21
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=55.16 E-value=10 Score=30.23 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=25.4
Q ss_pred ccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEc
Q 022580 198 DTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELD 234 (295)
Q Consensus 198 ~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels 234 (295)
.--+|..|++++++.+|+|.|+ |=|-+.-=..+..+
T Consensus 30 vP~~na~Vy~enk~~IGKV~DI-fGPV~~pY~sVKp~ 65 (104)
T 2hvy_B 30 VPSLNDRVVDKRLQFVGIVKDV-FGPVKMPYVAIKPK 65 (104)
T ss_dssp CCCTTCEEECTTCCEEEEEEEE-EEESSSCEEEEEEC
T ss_pred CCCCCCEeEcCCCCEeEEEEEE-ECCCCCcEEEEEec
Confidence 3458999999999999999999 44444433333333
No 22
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=46.79 E-value=26 Score=28.42 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=30.4
Q ss_pred cccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEcC
Q 022580 197 LDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELDS 235 (295)
Q Consensus 197 ~~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels~ 235 (295)
..--.+.+|++++.+++|+|.|+ |=|-+.--..+...+
T Consensus 49 ~VP~fNapVy~enK~~IGKVdEI-FGPin~~YfsVK~~~ 86 (114)
T 3u28_C 49 KIPYFNAPIYLENKTQVGKVDEI-LGPLNEVFFTIKCGD 86 (114)
T ss_dssp SEECTTCEEECTTCCEEEEEEEE-ESBTTSCEEEEEECT
T ss_pred CCCCCCCEeEccCCccceeEeEE-eCCCCccEEEEEecC
Confidence 45568999999999999999999 666666666666666
No 23
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=32.64 E-value=10 Score=28.74 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=36.8
Q ss_pred EEECCCCEEEEEEEcCCCCC---CCceEEecccceeeCcEEEEecCCcccccccccccccccCCEEEcCCCceeEEEE
Q 022580 143 WVDTTSWVVLVVEVRPNLLS---GEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVR 217 (295)
Q Consensus 143 ~vDp~~~rV~gLiV~~~~l~---~~~~~Ip~e~I~~IGDaIlV~~~~~v~~~~~l~~~~~LiG~~ViTe~G~~LG~V~ 217 (295)
++|.+.++++|++-....+. ......+..++.. ..++|.....+.+....-....+.-.+|++++|+.+|.|.
T Consensus 41 Vvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit 116 (127)
T 3nqr_A 41 VISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLR--TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVT 116 (127)
T ss_dssp EESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHCB--CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEE
T ss_pred EEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEE
Confidence 34443356777776554331 1112223333321 2344544433332222222345556789999999999885
No 24
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=29.53 E-value=28 Score=26.31 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=36.3
Q ss_pred EEECCCCEEEEEEEcCCCCCC-CceEEecccceeeCcEEEEecCCcccccccccccccccCCEEEcCCCceeEEEE
Q 022580 143 WVDTTSWVVLVVEVRPNLLSG-EPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVR 217 (295)
Q Consensus 143 ~vDp~~~rV~gLiV~~~~l~~-~~~~Ip~e~I~~IGDaIlV~~~~~v~~~~~l~~~~~LiG~~ViTe~G~~LG~V~ 217 (295)
++|.+.++++|++-....+.. .....+..++.. ..++|.....+.+....-....+.-.+|++++|+.+|.|.
T Consensus 43 Vvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit 116 (129)
T 3jtf_A 43 VYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVR--PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVT 116 (129)
T ss_dssp EESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGCB--CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEE
T ss_pred EEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHhC--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEE
Confidence 344433677777765543310 011123333321 3555554444432222222344556778888999999885
No 25
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=27.97 E-value=20 Score=27.44 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=37.3
Q ss_pred EECCCCEEEEEEEcCCCCC----CCceEEecccceeeCcEEEEecCCcccccccccccccccCCEEEcCCCceeEEEE
Q 022580 144 VDTTSWVVLVVEVRPNLLS----GEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVR 217 (295)
Q Consensus 144 vDp~~~rV~gLiV~~~~l~----~~~~~Ip~e~I~~IGDaIlV~~~~~v~~~~~l~~~~~LiG~~ViTe~G~~LG~V~ 217 (295)
+|.+.++++|++-....+. ......+..++.. ..++|.....+.+....-....+.-.+|++++|+.+|.|.
T Consensus 42 vd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit 117 (136)
T 3lfr_A 42 IGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLR--PATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVT 117 (136)
T ss_dssp ESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCB--CCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEE
T ss_pred EcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEE
Confidence 3433356777766554331 1122334444432 3555554444332222222344555788899999999884
No 26
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.02 E-value=55 Score=25.68 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=17.9
Q ss_pred cCCEEEcCCCceeEEEEEE
Q 022580 201 VGYRVVTPGRQNIGKVRGY 219 (295)
Q Consensus 201 iG~~ViTe~G~~LG~V~Dv 219 (295)
.|..|++++.+.+|+|.|+
T Consensus 52 ~~s~l~~edk~~IGkV~Ei 70 (103)
T 2eqn_A 52 EETVIFKSDRQAAGKIFEI 70 (103)
T ss_dssp TTCEEECTTSBEEEEEEEE
T ss_pred CCCEEEecCCcEEEEEEEE
Confidence 6889999999999999998
No 27
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=26.96 E-value=18 Score=27.18 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=15.7
Q ss_pred ccccCCEEEcCCCceeEEEE
Q 022580 198 DTLVGYRVVTPGRQNIGKVR 217 (295)
Q Consensus 198 ~~LiG~~ViTe~G~~LG~V~ 217 (295)
..+-..+|++++|+.+|.|.
T Consensus 97 ~~~~~lpVvd~~g~~~Giit 116 (128)
T 3gby_A 97 AKCSVVPLADEDGRYEGVVS 116 (128)
T ss_dssp CSSSEEEEECTTCBEEEEEE
T ss_pred CCCcEEEEECCCCCEEEEEE
Confidence 34445789999999999885
No 28
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=24.82 E-value=12 Score=30.12 Aligned_cols=73 Identities=18% Similarity=0.017 Sum_probs=40.5
Q ss_pred EEECCCCEEEEEEEcCCCCC--CCceEEecccceeeCcEEEEecCCcccccccccccccccCCEEEcCCCceeEEEE
Q 022580 143 WVDTTSWVVLVVEVRPNLLS--GEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVR 217 (295)
Q Consensus 143 ~vDp~~~rV~gLiV~~~~l~--~~~~~Ip~e~I~~IGDaIlV~~~~~v~~~~~l~~~~~LiG~~ViTe~G~~LG~V~ 217 (295)
++|.+.++++|++-....+. ......|..++. -+.++|.....+.+....-....+.-.+|++++|+.+|.|.
T Consensus 80 Vvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit 154 (172)
T 3lhh_A 80 VCRNNVDDMVGIISAKQLLSESIAGERLELVDLV--KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVT 154 (172)
T ss_dssp EESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC--BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEE
T ss_pred EEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh--cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEee
Confidence 44543367888876544321 011133455554 35667766555443322222344555688899999999885
No 29
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=22.74 E-value=26 Score=27.62 Aligned_cols=74 Identities=19% Similarity=0.129 Sum_probs=39.8
Q ss_pred EEEECCCCEEEEEEEcCCCCCC--CceEEecccceeeCcEEEEecCCcccccccccccccccCCEEEcCCCceeEEEE
Q 022580 142 LWVDTTSWVVLVVEVRPNLLSG--EPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVR 217 (295)
Q Consensus 142 L~vDp~~~rV~gLiV~~~~l~~--~~~~Ip~e~I~~IGDaIlV~~~~~v~~~~~l~~~~~LiG~~ViTe~G~~LG~V~ 217 (295)
.++|.+.++++|++-....+.. .....|..++.. ..++|.....+.+....-....+.-.+|++++|+.+|.|.
T Consensus 75 pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt 150 (156)
T 3oi8_A 75 PVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSILR--PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVT 150 (156)
T ss_dssp EEESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHCB--CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEE
T ss_pred EEEcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHcC--CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEE
Confidence 3556544588898876654411 111223333332 3455554444332222222344555689999999999885
No 30
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=22.60 E-value=8.9 Score=29.79 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=38.7
Q ss_pred EEECCCCEEEEEEEcCCCCCC--CceEEecccceeeCcEEEEecCCcccccccccccccccCCEEEcCCCceeEEEE
Q 022580 143 WVDTTSWVVLVVEVRPNLLSG--EPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVGYRVVTPGRQNIGKVR 217 (295)
Q Consensus 143 ~vDp~~~rV~gLiV~~~~l~~--~~~~Ip~e~I~~IGDaIlV~~~~~v~~~~~l~~~~~LiG~~ViTe~G~~LG~V~ 217 (295)
++|.+.++++|++-....+.. .....+..++. -+.++|.....+.+....-....+.-.+|++++|+.+|.|.
T Consensus 61 Vvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~~m--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit 135 (148)
T 3lv9_A 61 VCRKNKDDILGFVHIRDLYNQKINENKIELEEIL--RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVT 135 (148)
T ss_dssp EESSSTTSEEEEEEHHHHHHHHHHHSCCCGGGTC--BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEE
T ss_pred EEcCCCCcEEEEEEHHHHHHHHhcCCCccHHHhc--CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEE
Confidence 445433567777654432210 00123444444 25666665555443222222334555689999999999885
No 31
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=20.86 E-value=75 Score=26.86 Aligned_cols=98 Identities=11% Similarity=0.001 Sum_probs=57.5
Q ss_pred CCeeEeccCcceeeeEeEEEEECCCCEEEEEEEcCCC-----------CCCCceEEecccceee-----C-cEEEEecCC
Q 022580 124 AKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNL-----------LSGEPERLLLEDICQV-----G-DVVLIEDES 186 (295)
Q Consensus 124 GlpVIsi~tG~rLG~V~DL~vDp~~~rV~gLiV~~~~-----------l~~~~~~Ip~e~I~~I-----G-DaIlV~~~~ 186 (295)
|.+|..++-- .=|...++.||..+|+|+..-..... -......|++++...+ + .++-++
T Consensus 60 G~~vYEVe~~-~~g~e~ev~IDA~tG~Vl~~~~e~~d~dd~~~~~~~~~~~~~~~is~~~A~~~Al~~~~G~v~e~e--- 135 (174)
T 4exr_A 60 NKFVYTVEGV-DDNNEYKMKIDANTKDVLEDKTEKLDSEDLNGVARKEKLDLNDIMTPQQAMEIALKEQNGIVKEWS--- 135 (174)
T ss_dssp TEEEEEEEEE-CSSEEEEEEEETTTCCEEEEEEEECCGGGTTTTGGGGCCCCTTCCCHHHHHHHHHHHSCSEEEEEE---
T ss_pred CEEEEEEEEE-ECCEEEEEEEECCCCcEeccccccccccccccccchhcccccCCcCHHHHHHHHHHhCCCeEEEEE---
Confidence 6777765533 35889999999999999888754210 0111234555555433 2 221111
Q ss_pred cccccccccccccccCCEEEcCCCceeEEEEEEEEEcCCccEEEEEEcC
Q 022580 187 VMENDFKMVRLDTLVGYRVVTPGRQNIGKVRGYTFNINSGAVESLELDS 235 (295)
Q Consensus 187 ~v~~~~~l~~~~~LiG~~ViTe~G~~LG~V~Dv~FD~~TG~I~~yels~ 235 (295)
++.+.-......++.+ + |...+|.+|..||+|...+.++
T Consensus 136 -----Ld~d~G~~vYevei~~-~----~~~~ev~IDA~tG~Il~~e~DD 174 (174)
T 4exr_A 136 -----LDKDLDVTFYKIRIDK-D----KNEYDIKVDSKKGTVLKVEKED 174 (174)
T ss_dssp -----EEEETTEEEEEEEEEE-T----TEEEEEEEETTTCCEEEEEEC-
T ss_pred -----EEEeCCEEEEEEEEEE-C----CEEEEEEEECCCCCEeeeccCC
Confidence 0111112234445554 2 5778999999999999988764
No 32
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=20.66 E-value=43 Score=22.53 Aligned_cols=14 Identities=14% Similarity=0.608 Sum_probs=10.9
Q ss_pred eeeeeecccccCCc
Q 022580 5 VRVSRMSECISSIP 18 (295)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (295)
-|+-+||+|+....
T Consensus 19 ~RigklC~C~rg~~ 32 (41)
T 1hy9_A 19 ARIGKLCDCPRGTS 32 (41)
T ss_dssp SSEEECCBCCTTCC
T ss_pred cccchhcCCCCCCc
Confidence 37889999998544
Done!