Query 022582
Match_columns 295
No_of_seqs 128 out of 819
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:38:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14481 dihydroxyacetone kina 100.0 9E-108 2E-112 777.8 29.9 263 1-268 68-331 (331)
2 TIGR02363 dhaK1 dihydroxyaceto 100.0 2E-107 3E-112 775.7 29.6 260 1-265 69-329 (329)
3 TIGR02362 dhaK1b probable dihy 100.0 2E-107 5E-112 773.9 29.4 260 1-265 65-326 (326)
4 PRK11468 dihydroxyacetone kina 100.0 3E-107 6E-112 778.6 30.1 267 1-268 68-355 (356)
5 PRK14483 DhaKLM operon coactiv 100.0 3E-107 7E-112 773.2 29.4 260 1-265 67-329 (329)
6 PF02733 Dak1: Dak1 domain; I 100.0 3E-108 6E-113 780.7 20.8 267 1-268 52-325 (325)
7 PRK14479 dihydroxyacetone kina 100.0 2E-101 4E-106 779.2 29.5 262 1-267 67-329 (568)
8 TIGR02361 dak_ATP dihydroxyace 100.0 4E-100 8E-105 770.2 31.6 267 1-267 66-341 (574)
9 PTZ00375 dihydroxyacetone kina 100.0 2.6E-99 6E-104 763.9 29.1 265 1-267 70-348 (584)
10 KOG2426 Dihydroxyacetone kinas 100.0 5.3E-97 1E-101 721.8 25.3 276 1-276 71-361 (582)
11 COG2376 DAK1 Dihydroxyacetone 100.0 3.1E-80 6.8E-85 587.2 21.9 255 1-265 67-323 (323)
12 TIGR03599 YloV DAK2 domain fus 92.2 11 0.00024 39.1 17.6 180 3-230 336-519 (530)
13 PRK11377 dihydroxyacetone kina 88.2 2.9 6.2E-05 42.8 9.3 176 15-221 48-240 (473)
14 TIGR02364 dha_pts dihydroxyace 87.0 3.7 8E-05 34.6 7.8 78 15-113 44-124 (125)
15 PRK14484 phosphotransferase ma 86.3 1.9 4.1E-05 36.6 5.7 77 15-113 44-120 (124)
16 PRK09314 bifunctional 3,4-dihy 80.7 2.2 4.8E-05 42.0 4.4 55 4-59 252-310 (339)
17 PRK00393 ribA GTP cyclohydrola 75.2 5.3 0.00011 36.0 4.9 35 4-38 53-91 (197)
18 PRK12485 bifunctional 3,4-dihy 74.3 3.8 8.3E-05 40.7 4.1 57 3-59 255-340 (369)
19 PF00925 GTP_cyclohydro2: GTP 73.5 2.3 4.9E-05 37.4 2.0 61 4-65 51-146 (169)
20 TIGR00505 ribA GTP cyclohydrol 72.7 6.5 0.00014 35.2 4.8 34 4-37 50-87 (191)
21 cd00641 GTP_cyclohydro2 GTP cy 71.9 7.2 0.00016 34.9 4.9 34 4-37 52-89 (193)
22 PF02645 DegV: Uncharacterised 69.5 14 0.00031 34.5 6.5 195 12-245 61-277 (280)
23 PLN02831 Bifunctional GTP cycl 68.0 6 0.00013 40.4 3.9 39 3-41 290-332 (450)
24 TIGR00762 DegV EDD domain prot 66.3 17 0.00036 34.0 6.3 95 12-122 60-157 (275)
25 PRK14019 bifunctional 3,4-dihy 65.8 8.4 0.00018 38.3 4.3 56 4-59 256-337 (367)
26 COG3412 Uncharacterized protei 62.9 12 0.00026 32.2 4.2 80 14-112 44-123 (129)
27 cd00615 Orn_deC_like Ornithine 61.9 23 0.00051 32.8 6.4 55 12-70 138-192 (294)
28 PRK08815 GTP cyclohydrolase; P 61.5 7.8 0.00017 38.7 3.2 40 3-43 223-266 (375)
29 PF00975 Thioesterase: Thioest 60.9 18 0.00038 31.4 5.1 82 138-235 23-106 (229)
30 PRK09311 bifunctional 3,4-dihy 55.9 13 0.00028 37.4 3.8 38 3-40 256-297 (402)
31 PRK05340 UDP-2,3-diacylglucosa 54.3 18 0.00039 32.8 4.1 36 5-40 37-81 (241)
32 PF02633 Creatininase: Creatin 48.7 1E+02 0.0022 28.1 8.1 63 151-227 72-135 (237)
33 COG1105 FruK Fructose-1-phosph 48.7 87 0.0019 30.6 8.0 127 112-262 66-199 (310)
34 PTZ00397 macrophage migration 48.2 40 0.00086 27.3 4.9 43 188-230 57-99 (116)
35 PF13684 Dak1_2: Dihydroxyacet 46.3 2.8E+02 0.0061 26.7 17.8 182 3-230 118-302 (313)
36 TIGR01854 lipid_A_lpxH UDP-2,3 45.4 33 0.00071 31.0 4.4 36 5-40 35-79 (231)
37 PF03793 PASTA: PASTA domain; 44.2 44 0.00095 23.7 4.1 32 34-67 1-32 (63)
38 PRK09319 bifunctional 3,4-dihy 43.7 27 0.00058 36.7 3.9 38 3-41 261-302 (555)
39 PRK11340 phosphodiesterase Yae 43.7 54 0.0012 30.5 5.6 55 5-59 85-144 (271)
40 PRK09318 bifunctional 3,4-dihy 43.1 21 0.00045 35.9 2.9 40 3-43 239-281 (387)
41 TIGR00619 sbcd exonuclease Sbc 41.6 1.4E+02 0.0029 27.6 7.9 54 5-60 44-105 (253)
42 cd07385 MPP_YkuE_C Bacillus su 41.2 74 0.0016 27.7 5.8 54 5-58 37-92 (223)
43 COG1307 DegV Uncharacterized p 40.8 2.8E+02 0.0061 26.4 10.0 194 14-247 64-280 (282)
44 PTZ00450 macrophage migration 40.4 47 0.001 27.5 4.2 42 190-231 59-100 (113)
45 cd03465 URO-D_like The URO-D _ 39.5 86 0.0019 29.3 6.3 106 12-132 206-315 (330)
46 PF02955 GSH-S_ATP: Prokaryoti 38.8 71 0.0015 28.4 5.4 57 180-237 76-159 (173)
47 PF08353 DUF1727: Domain of un 38.0 40 0.00086 28.0 3.4 32 10-41 81-112 (113)
48 PRK05647 purN phosphoribosylgl 37.4 64 0.0014 29.1 4.9 118 14-150 13-138 (200)
49 COG0616 SppA Periplasmic serin 35.6 1.5E+02 0.0032 28.6 7.4 60 165-236 83-142 (317)
50 PLN03065 isocitrate dehydrogen 35.5 4.3E+02 0.0093 27.6 10.9 135 22-175 324-474 (483)
51 TIGR00347 bioD dethiobiotin sy 35.1 50 0.0011 27.7 3.7 38 29-66 129-166 (166)
52 PF02873 MurB_C: UDP-N-acetyle 33.8 54 0.0012 26.9 3.5 34 192-226 66-99 (105)
53 PRK07198 hypothetical protein; 33.2 68 0.0015 32.7 4.7 38 3-41 246-291 (418)
54 TIGR00639 PurN phosphoribosylg 33.1 79 0.0017 28.3 4.8 48 10-62 5-55 (190)
55 KOG1526 NADP-dependent isocitr 32.5 32 0.00069 34.1 2.2 131 24-175 267-414 (422)
56 KOG2743 Cobalamin synthesis pr 32.4 73 0.0016 31.7 4.7 45 168-219 71-120 (391)
57 COG1416 Uncharacterized conser 32.1 1E+02 0.0023 25.9 5.0 71 164-241 13-83 (112)
58 cd06167 LabA_like LabA_like pr 31.6 1.1E+02 0.0024 25.1 5.1 43 20-66 89-132 (149)
59 COG1732 OpuBC Periplasmic glyc 31.5 1E+02 0.0022 30.2 5.4 85 121-237 15-99 (300)
60 TIGR03588 PseC UDP-4-keto-6-de 31.5 1.1E+02 0.0023 29.4 5.7 55 14-72 105-159 (380)
61 PF12327 FtsZ_C: FtsZ family, 30.8 1.5E+02 0.0032 23.6 5.5 73 163-246 16-90 (95)
62 PF13500 AAA_26: AAA domain; P 30.6 30 0.00065 30.1 1.6 39 29-67 129-167 (199)
63 COG4175 ProV ABC-type proline/ 30.6 75 0.0016 31.9 4.4 119 89-249 10-137 (386)
64 TIGR02326 transamin_PhnW 2-ami 30.5 1.8E+02 0.0038 27.4 7.0 57 10-71 58-115 (363)
65 TIGR01822 2am3keto_CoA 2-amino 30.4 1.4E+02 0.0031 28.3 6.3 54 13-70 151-209 (393)
66 PF07788 DUF1626: Protein of u 30.2 46 0.00099 25.8 2.3 24 31-59 47-70 (70)
67 PF01187 MIF: Macrophage migra 29.5 42 0.00091 27.3 2.2 41 190-230 57-97 (114)
68 PRK04946 hypothetical protein; 29.3 1.4E+02 0.0031 26.8 5.7 71 161-250 103-176 (181)
69 KOG3439 Protein conjugation fa 29.2 54 0.0012 27.7 2.8 26 13-40 85-110 (116)
70 COG0336 TrmD tRNA-(guanine-N1) 28.6 39 0.00085 31.9 2.1 58 16-73 64-133 (240)
71 PRK00115 hemE uroporphyrinogen 28.6 87 0.0019 30.1 4.6 106 11-132 221-328 (346)
72 COG0523 Putative GTPases (G3E 28.4 53 0.0011 32.0 3.0 51 169-235 16-66 (323)
73 cd07404 MPP_MS158 Microscilla 28.1 80 0.0017 26.4 3.8 35 5-39 31-65 (166)
74 COG0024 Map Methionine aminope 27.2 2.3E+02 0.0049 27.0 6.9 124 89-231 24-171 (255)
75 PF00975 Thioesterase: Thioest 25.8 1.1E+02 0.0024 26.3 4.4 49 17-67 53-101 (229)
76 KOG3997 Major apurinic/apyrimi 25.5 18 0.00039 34.3 -0.7 44 87-131 142-185 (281)
77 cd05013 SIS_RpiR RpiR-like pro 25.4 2.1E+02 0.0045 22.4 5.5 57 10-70 42-98 (139)
78 PF08708 PriCT_1: Primase C te 24.4 1.2E+02 0.0027 22.2 3.8 32 86-117 13-49 (71)
79 COG2100 Predicted Fe-S oxidore 24.3 2.6E+02 0.0056 28.2 6.9 99 7-131 168-267 (414)
80 PHA02097 hypothetical protein 24.0 35 0.00076 25.2 0.7 23 25-48 15-37 (59)
81 PF13689 DUF4154: Domain of un 23.1 57 0.0012 27.5 1.9 22 40-61 115-136 (145)
82 PF11195 DUF2829: Protein of u 23.0 78 0.0017 24.3 2.5 16 44-60 1-16 (75)
83 smart00740 PASTA PASTA domain. 22.9 1.7E+02 0.0036 19.9 4.0 33 34-68 5-37 (66)
84 PLN02625 uroporphyrin-III C-me 22.8 2E+02 0.0043 26.6 5.7 67 12-104 74-144 (263)
85 PF12850 Metallophos_2: Calcin 22.5 1E+02 0.0022 24.9 3.3 29 5-40 30-58 (156)
86 PRK06703 flavodoxin; Provision 22.4 4.5E+02 0.0097 21.7 9.1 101 107-225 16-117 (151)
87 PF01866 Diphthamide_syn: Puta 22.2 2.3E+02 0.0051 27.0 6.1 46 185-234 207-252 (307)
88 COG0807 RibA GTP cyclohydrolas 21.8 1.7E+02 0.0038 26.7 4.9 55 5-59 53-142 (193)
89 TIGR01825 gly_Cac_T_rel pyrido 21.8 2.4E+02 0.0053 26.6 6.1 56 12-71 145-203 (385)
90 TIGR03468 HpnG hopanoid-associ 21.3 2E+02 0.0043 25.8 5.2 83 39-121 125-210 (212)
91 PRK12374 putative dithiobiotin 20.8 1.4E+02 0.003 26.9 4.1 58 7-67 114-173 (231)
92 TIGR00259 thylakoid_BtpA membr 20.7 2.1E+02 0.0045 27.2 5.3 59 161-226 21-88 (257)
93 COG0420 SbcD DNA repair exonuc 20.6 91 0.002 30.3 3.0 46 5-50 45-97 (390)
94 PF14468 DUF4427: Protein of u 20.5 3.9E+02 0.0084 23.2 6.4 98 103-226 3-104 (132)
No 1
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=9.3e-108 Score=777.82 Aligned_cols=263 Identities=47% Similarity=0.758 Sum_probs=258.0
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gR 80 (295)
|||||||||||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.+++|
T Consensus 68 mLdaav~G~VFaSPs~~~Il~ai~av~~~~GvL~iv~NYtGD~lnF~lA~E~a~~eGi~v~~V~v~DDva~~~~~~~~~R 147 (331)
T PRK14481 68 MLDAAVCGAVFTSPTPDQILEAIKAVDTGAGVLLIVKNYSGDVMNFEMAAELAEMEGIEVASVVVDDDVAVEDSLYTQGR 147 (331)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHhCCCCEEEEEeCCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877778899
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 022582 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (295)
Q Consensus 81 RGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emE~G~GIHGEpG~~r~~ 159 (295)
||+||||||||||||||++|+||+||++++|++++|++||||+|++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAG~vlv~KiaGAaA~~G~sL~ev~~~a~~~~~~~~Tigval~~ct~Pg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 227 (331)
T PRK14481 148 RGVAGTVFVHKIAGAAAEAGASLDEVKALAEKVNPNIRSMGVALSPCTVPAVGKPGFDLGDDEIEIGIGIHGEPGRRREK 227 (331)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCCccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 022582 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (295)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~ 239 (295)
+.++++++++|+++|+++ +++++||+++|||||||+||.||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 228 ~~~a~~l~~~m~~~ll~~----~~~~~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~i~r~~vG~~~TSldm~ 302 (331)
T PRK14481 228 LKPADEIAEELLEKILED----LKLVAGDEVLVLVNGMGATPLMELYIVYNDVAELLEER-GVTVARSLVGNYMTSLDMA 302 (331)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999996 79999999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEecccHHHHHhhcCCCCCCCCCCC
Q 022582 240 GFSISIMKADEVILKHLDATTKAPHWPVG 268 (295)
Q Consensus 240 GfSiTLl~ldd~l~~lldap~~ap~w~~~ 268 (295)
||||||+++||+|++|||+||++|+|+|.
T Consensus 303 G~SiTLl~ld~el~~~ldap~~~~~w~~~ 331 (331)
T PRK14481 303 GFSITLLKLDDELLELLDAPVDTPALRWG 331 (331)
T ss_pred ceEEEEeecCHHHHHHhCCCCcCCCCCCC
Confidence 99999999999999999999999999873
No 2
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=100.00 E-value=1.6e-107 Score=775.69 Aligned_cols=260 Identities=43% Similarity=0.704 Sum_probs=255.9
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gR 80 (295)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 69 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~iv~NYtGD~lnF~mA~E~a~~eGi~v~~V~V~DDva~~~~~~~~~R 148 (329)
T TIGR02363 69 MLDAAVPGEVFTSPTPDQILEAIKAVDQGAGVLLIVKNYTGDVMNFEMAAELAEDEGIKVATVVVDDDIAVEDSLYTAGR 148 (329)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHHcCCcEEEEEECCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877678899
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 022582 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (295)
Q Consensus 81 RGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emE~G~GIHGEpG~~r~~ 159 (295)
||+||||||||||||||++|+||+||++++|++++|++||||+|++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 149 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGval~~ctvPg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 228 (329)
T TIGR02363 149 RGVAGTVFVHKIAGAAAEKGASLDELKSLGEKVNPNTKSIGVALTACTVPAVGKPGFDLADDEMEIGVGIHGEPGIRREK 228 (329)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 022582 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (295)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~ 239 (295)
+.++++++++|+++|+++ ++|++||+++|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 229 ~~~a~~l~~~l~~~l~~~----~~~~~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 303 (329)
T TIGR02363 229 MKSSDEIADELLDKLLDD----LGLQSGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQR-GVNVARTLVGNYMTSLDMA 303 (329)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999997 78999999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEecccHHHHHhhcCCCCCCCC
Q 022582 240 GFSISIMKADEVILKHLDATTKAPHW 265 (295)
Q Consensus 240 GfSiTLl~ldd~l~~lldap~~ap~w 265 (295)
||||||+++|||+++|||+||++|+|
T Consensus 304 G~SiTLl~ld~el~~~ldap~~~~~w 329 (329)
T TIGR02363 304 GFSLTLLKLDDELLELWDAPVTTIAL 329 (329)
T ss_pred ceEEEEeeCCHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999
No 3
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=100.00 E-value=2.2e-107 Score=773.91 Aligned_cols=260 Identities=35% Similarity=0.551 Sum_probs=253.5
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gR 80 (295)
|||||||||||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++...||
T Consensus 65 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~ivkNYtGD~lNF~mA~E~a~~eGi~v~~V~V~DDvA~~~~~~~~~R 144 (326)
T TIGR02362 65 MLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVIIKNFEADLSEFSQAIQQARQEGRQIKYIIVHDDISVEHESFKQRR 144 (326)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEeccCHHHHhhHHHHHHHHHHcCCcEEEEEECCcccCCCCcccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999654545699
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 022582 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (295)
Q Consensus 81 RGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emE~G~GIHGEpG~~r~~ 159 (295)
||+||||||||||||||++|+||+||++++|++++|++||||||++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 145 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~~f~l~~~emE~G~GIHGEpG~~r~~ 224 (326)
T TIGR02362 145 RGVAGTILVHKILGAAAAEGASLDELEHIAAALVTNIATIGVAAKSARIPGQSTPSFDLEEGEIYYGIGIHGEPGYRTEP 224 (326)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeccccccCCCCCCCCCccCCCcEEeccccCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999 8899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 022582 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (295)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~ 239 (295)
++++++++++|+++|+++ +++++||+++|||||||+||.|||||+++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 225 ~~~a~elv~~l~~~ll~~----~~~~~gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 299 (326)
T TIGR02362 225 FVSSEHLAVELVNKLKLK----FRWQADDHYAVLVNNLGGTTPMEQMVFNNDVHELLALE-ALHLPFIKVGTFLTSLDMH 299 (326)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCCC
Confidence 999999999999999996 78999999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEecc-cHHHHHhhcCCCCCCCC
Q 022582 240 GFSISIMKA-DEVILKHLDATTKAPHW 265 (295)
Q Consensus 240 GfSiTLl~l-dd~l~~lldap~~ap~w 265 (295)
||||||+++ ||||++|||+||++|+|
T Consensus 300 G~SiTll~l~d~el~~~ldap~~~~~~ 326 (326)
T TIGR02362 300 GLSLTLLRLKDPQWLDYLNAPVDAAAW 326 (326)
T ss_pred ccEEEEEeCCcHHHHHHhCCCCCCCCC
Confidence 999999999 56999999999999999
No 4
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=2.9e-107 Score=778.60 Aligned_cols=267 Identities=38% Similarity=0.624 Sum_probs=258.9
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gR 80 (295)
||||||||+||||||++||++||+++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++++.+||
T Consensus 68 mLdAAv~G~VFaSPs~~qI~~ai~av~~~~GvLlivkNYtGDvlNF~mAaE~a~~eGi~v~~V~V~DDva~~~~~~~~gR 147 (356)
T PRK11468 68 MLDGACPGEIFTSPTPDQMFECAMQVDGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAVKDSLYTAGR 147 (356)
T ss_pred cccceeeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHhhccHHHHHHHHHhCCCcEEEEEeCCcccCCCCcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999887778999
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 022582 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (295)
Q Consensus 81 RGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emE~G~GIHGEpG~~r~~ 159 (295)
||+|||||||||+||||++|+||+||++++++++++++||||+|++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAGtvlv~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGvaL~~ctvP~~~~~~f~L~~~emE~GmGIHGEpG~~r~~ 227 (356)
T PRK11468 148 RGVANTVLIEKLVGAAAERGYSLDQCAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRP 227 (356)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 8899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccc--------------------CCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhh
Q 022582 160 LQPVDVVVSHVLKQILSTE--------------------TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE 219 (295)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~--------------------~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~ 219 (295)
+.|+++++++|+++|+++. ...+++++||+|+|||||||+||.|||||+++++.++|+++
T Consensus 228 ~~~a~elv~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v~vLVNgLG~t~~~El~i~~~~v~~~L~~~ 307 (356)
T PRK11468 228 FSSLDQTVDEMFDTLLENGSYHRTLRFWDRQQGSWQEEEQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLATRCEQA 307 (356)
T ss_pred CCCHHHHHHHHHHHHHcCcccccchhccccccccccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999862 11258899999999999999999999999999999999888
Q ss_pred cCCeEEEeeeeccccccCCCcceEEEecccHHHHHhhcCCCCCCCCCCC
Q 022582 220 HGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (295)
Q Consensus 220 ~gi~v~r~~vG~~~TSldm~GfSiTLl~ldd~l~~lldap~~ap~w~~~ 268 (295)
||+|+|+++|+|||||||+||||||+++||++++|||+||++|+|+|+
T Consensus 308 -gi~v~r~~vG~~~TSldm~G~SiTLl~lddel~~lldap~~~~~w~~~ 355 (356)
T PRK11468 308 -GLTIERNLIGAYCTSLDMQGFSITLLKVDDETLALWDAPVHTPALRWG 355 (356)
T ss_pred -CCEEEEeeeecccccCCCCceEEEEeecCHHHHHHhCCCCCCcccccC
Confidence 999999999999999999999999999999999999999999999875
No 5
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=100.00 E-value=3.2e-107 Score=773.16 Aligned_cols=260 Identities=37% Similarity=0.588 Sum_probs=254.4
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCC-CCCCCC
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPP-PRGIAG 79 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~-~~~~~g 79 (295)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++ +++..|
T Consensus 67 mLdAav~G~VFaSPs~~qI~~ai~av~~~~GvL~ivkNYtGDvlnF~mA~E~a~~eGi~v~~VvV~DDva~~~~~~~~~~ 146 (329)
T PRK14483 67 MLTAAVNGSIFTPPTAEQILAATRLVPKGKGVFFIIKNFEADVAEFSAAIQIARQEGRQIKYIIVHDDISVEDDASFNKR 146 (329)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCcccCCCccccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987 665669
Q ss_pred cccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCcCCCeeEEeccccCCCCcccc
Q 022582 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (295)
Q Consensus 80 RRGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emE~G~GIHGEpG~~r~ 158 (295)
|||+||||||||||||||++|+||+||++++|++++|++||||||++|++|+ ++|+|+|++||||||||||||||++|.
T Consensus 147 RRGlAGtvlv~KiaGAaA~~G~~L~ev~~~a~~~~~~~~Tigval~~c~vPg~~~~~f~l~~~emE~GmGIHGEpG~~r~ 226 (329)
T PRK14483 147 RRGVAGTVLLHKILGAAALEGASLDELEQLGLSLTENIATLGVALSPANLPVAGLPSFDLNEDEISYGIGIHGEPGYRKE 226 (329)
T ss_pred CCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999 889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCC
Q 022582 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (295)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm 238 (295)
++.++++++++|+++|+++ +++++||+|+|||||||+||+|||||+++++.++|+++ ||+|+|+|+|+|||||||
T Consensus 227 ~~~~a~~l~~~l~~~ll~~----~~~~~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm 301 (329)
T PRK14483 227 PFSSSEILAIELVNKLKSK----YRWQKGDNFILLINGLGATTLMEQYIFANDIRRLLELE-GLQITFVKVGTLLTSLDM 301 (329)
T ss_pred CCCCHHHHHHHHHHHHHhh----cCcCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCC
Confidence 9999999999999999996 78999999999999999999999999999999999887 999999999999999999
Q ss_pred CcceEEEecc-cHHHHHhhcCCCCCCCC
Q 022582 239 AGFSISIMKA-DEVILKHLDATTKAPHW 265 (295)
Q Consensus 239 ~GfSiTLl~l-dd~l~~lldap~~ap~w 265 (295)
+||||||+++ |+||++|||+||++|+|
T Consensus 302 ~G~SiTLl~l~d~el~~~ldap~~~~~w 329 (329)
T PRK14483 302 KGISLTLLKVKDPDWLDWLKAPTRAAAW 329 (329)
T ss_pred CccEEEEEeCCcHHHHHHhcCCCCCCCC
Confidence 9999999999 56999999999999999
No 6
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=100.00 E-value=2.7e-108 Score=780.68 Aligned_cols=267 Identities=53% Similarity=0.860 Sum_probs=226.5
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCC-CC
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGI-AG 79 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~-~g 79 (295)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++++. +|
T Consensus 52 mLdAav~G~VFaSPs~~qI~~ai~~~~~~~Gvl~iv~NYtGD~lNF~~A~E~a~~~Gi~v~~v~v~DDva~~~~~~~~~g 131 (325)
T PF02733_consen 52 MLDAAVCGDVFASPSADQILAAIKAVDSGKGVLLIVKNYTGDVLNFGMAAEKARAEGIKVEMVIVGDDVASAPSKNSLVG 131 (325)
T ss_dssp SBSEEEEEEETS---HHHHHHHHHHH-SSS-EEEEEESSHHHHHHHHHHHHHHHHTT--EEEEEE--B-SSSSSTTS-SS
T ss_pred ccceEeeCCCcCCCCHHHHHHHHHhccCCCCEEEEEecchHHHhhHHHHHHHHHhCCCCEEEEEecCccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876 99
Q ss_pred cccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCcCCCeeEEeccccCCCCcccc
Q 022582 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (295)
Q Consensus 80 RRGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emE~G~GIHGEpG~~r~ 158 (295)
|||+||+||||||+|||||+|+||+||++++++++++++||||+|++||+|+ ++++|+|++||||||||||||||++|.
T Consensus 132 RRGlAG~v~v~KiaGAaAe~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~f~L~~~emE~GmGIHGEpG~~r~ 211 (325)
T PF02733_consen 132 RRGLAGTVLVHKIAGAAAERGASLDEVKELAEKANDNLRTIGVALSPCTVPGRGKPSFELPEDEMEIGMGIHGEPGVERI 211 (325)
T ss_dssp S---TTHHHHHHHHHHHHHTT--HHHHHHHHHHHHTTEEEEEEEEE--EETTTCSSSS-B-TTEEEETE-TTS---SEEE
T ss_pred cccccchhHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhceeeeeccCcCCCCCCCCcccCCCCCEEeccccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHccc---CCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhh-hhhcCCeEEEeeeeccc
Q 022582 159 DLQP-VDVVVSHVLKQILSTE---TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNL-QLEHGLAVERVYTGSFM 233 (295)
Q Consensus 159 ~~~~-a~~lv~~ml~~ll~~~---~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L-~~~~gi~v~r~~vG~~~ 233 (295)
++.+ +++++++|+++|+++. |+++++++||+++|||||||+||.||||++++++.++| +++ ||+|+|+|+|+||
T Consensus 212 ~~~~~a~elv~~ml~~ll~~~~~~r~~~~~~~gd~v~llVNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~r~~vG~~~ 290 (325)
T PF02733_consen 212 KLKPSADELVDEMLDKLLDDLDPDRAFLPLKEGDEVALLVNNLGGTSQLELYIIAREVLEQLEEEK-GIKVVRVYVGNFM 290 (325)
T ss_dssp E--B-HHHHHHHHHHHHHHCCHCCEEEHTG-TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHH-HHT-TEEEEEEEEE-SS
T ss_pred CCCCcHHHHHHHHHHHHhccCcccccccccCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHhc-CceEEEeEEEccc
Confidence 9999 9999999999999874 66789999999999999999999999999999999999 666 9999999999999
Q ss_pred cccCCCcceEEEecccHHHHHhhcCCCCCCCCCCC
Q 022582 234 TSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (295)
Q Consensus 234 TSldm~GfSiTLl~ldd~l~~lldap~~ap~w~~~ 268 (295)
|||||+||||||+++|+++++|||+|+++|+|+|+
T Consensus 291 TSLdm~GfSiTLl~ld~e~~~~~~ap~~~pa~~~g 325 (325)
T PF02733_consen 291 TSLDMAGFSITLLKLDDELKELLDAPTDTPAWRWG 325 (325)
T ss_dssp --TTBEEEEEEEEEETSHHHHHHHS-EESSS-EE-
T ss_pred CCCCCceeEEEeeecCHHHHHHhcCcccCccCCCC
Confidence 99999999999999999999999999999999985
No 7
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=100.00 E-value=1.8e-101 Score=779.15 Aligned_cols=262 Identities=49% Similarity=0.770 Sum_probs=256.9
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gR 80 (295)
|||||||||||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+.++.+++||
T Consensus 67 ml~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~~R 146 (568)
T PRK14479 67 MLDAAVCGNVFTSPSADQVYAAIRAADGGAGVLLIVGNYAGDVMNFGLAAELARAEGIDVRTVVVTDDVASAPSGETAGR 146 (568)
T ss_pred ccceeeccCccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHHhhHHHHHHHHHhcCCcEEEEEeCCcccCCCCCcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999665668899
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 022582 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (295)
Q Consensus 81 RGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emE~G~GIHGEpG~~r~~ 159 (295)
||+|||||||||+||||++|+||+||++++++++++++||||+|++||+|+ ++|.|+|++||||||||||||||++|.+
T Consensus 147 RG~AG~v~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~tigval~~c~~P~~~~~~f~l~~~e~E~G~GiHgEpG~~~~~ 226 (568)
T PRK14479 147 RGIAGTVLVFKIAGAAAEAGLDLDEVAAIARKANARTRSMGVALDGCTLPGAGEPLFTLPEGEMELGLGIHGEPGIEREA 226 (568)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccCcccCCCCCCCCcCCCCeeEeccccCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999 8899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 022582 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (295)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~ 239 (295)
+.++++++++|+++|+++ +++++||+|+|||||||+||+|||||+++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 227 ~~~a~~~~~~~~~~l~~~----~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~-~i~v~~~~vG~~~Tsldm~ 301 (568)
T PRK14479 227 LPTADELADRLVDRILAD----LPLGAGERVAVLVNGLGATPYEELFVVYGAVARLLAAR-GITVVRPEVGEFVTSLDMA 301 (568)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeeecccccCCCC
Confidence 999999999999999997 78999999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEecccHHHHHhhcCCCCCCCCCC
Q 022582 240 GFSISIMKADEVILKHLDATTKAPHWPV 267 (295)
Q Consensus 240 GfSiTLl~ldd~l~~lldap~~ap~w~~ 267 (295)
||||||+++||+|++|||+||++|+|++
T Consensus 302 G~SiTl~~~d~~~~~~ldap~~~~~~~~ 329 (568)
T PRK14479 302 GASLTLMKLDDELEELWDAPADTPAFRR 329 (568)
T ss_pred ccEEEeeeCCHHHHHHhCCCCCCCCCCC
Confidence 9999999999999999999999999966
No 8
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=100.00 E-value=3.9e-100 Score=770.17 Aligned_cols=267 Identities=54% Similarity=0.862 Sum_probs=256.4
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccC-CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCC-CCCC
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPP-RGIA 78 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~-~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~-~~~~ 78 (295)
|||||||||||||||++||++|||++++ ++|||||||||||||||||||+|+|+++||+|++|+|+||||+++. ..++
T Consensus 66 ml~aav~G~vFaSPs~~~i~~ai~~~~~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~eg~~v~~v~v~DDva~~~~~~~~~ 145 (574)
T TIGR02361 66 MLTAAVAGDVFASPSTKQILAAIRAVVGSEAGTLLIVKNYTGDRLNFGLAAEKAKAEGYNVEMVIVGDDVSVGRKKGGLV 145 (574)
T ss_pred ccceeeeccccCCCCHHHHHHHHHHhcCCCCcEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCccCCCCccCCCC
Confidence 8999999999999999999999999999 9999999999999999999999999999999999999999999763 3478
Q ss_pred CcccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCCCCCCC-CcCCCeeEEeccccCCCCccc
Q 022582 79 GRRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSD-RLGPGKMELGLGIHGEPGAAV 157 (295)
Q Consensus 79 gRRGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f-~L~~~emE~G~GIHGEpG~~r 157 (295)
||||+|||||||||+||+|++|.||+||++++|++++|++||||+|++||+||+++.| +|++||||||||||||||++|
T Consensus 146 ~RRGlAGtv~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~~~l~~~e~E~G~GiHgEpG~~~ 225 (574)
T TIGR02361 146 GRRGLAGTVLVHKIAGAAAARGLSLAEVAKVAQAAADNLVTIGASLDHCHVPGETEAEPELKEDEMELGMGIHNEPGAKR 225 (574)
T ss_pred CCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeeccccccCCCCCCCCCCCCCceEeccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999976666 999999999999999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHccc--CCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccc
Q 022582 158 ADLQP-VDVVVSHVLKQILSTE--TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT 234 (295)
Q Consensus 158 ~~~~~-a~~lv~~ml~~ll~~~--~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~T 234 (295)
.++.+ +++++++|+++|++++ |+++++++||+|+|||||||+||+|||||+++++.++|+++++|+|+|+|+|+|||
T Consensus 226 ~~~~~a~~~l~~~l~~~l~~~~d~r~~~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~~i~v~~~~~G~~~T 305 (574)
T TIGR02361 226 ISPIPSSDLVVQLMLKKLLDETDKRSYVKFNEGDEVVLLVNNLGGVSNLELGIIADEVVEQLALHYNIIPVRIYSGTFMT 305 (574)
T ss_pred CCCCChHHHHHHHHHHHHhccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeeecccc
Confidence 99999 6669999999999863 66789999999999999999999999999999999999888679999999999999
Q ss_pred ccCCCcceEEEecccH---HHHHhhcCCCCCCCCCC
Q 022582 235 SLDMAGFSISIMKADE---VILKHLDATTKAPHWPV 267 (295)
Q Consensus 235 Sldm~GfSiTLl~ldd---~l~~lldap~~ap~w~~ 267 (295)
||||+||||||+++|| ||++|||+||++|+||.
T Consensus 306 sl~m~G~SlTl~~ld~~~~e~~~~ldap~~~~~~~~ 341 (574)
T TIGR02361 306 SLNGPGFSITLLNATEAGKSILDLLDAPTEAPGWPV 341 (574)
T ss_pred cCCCCccEEEEEecCCChHHHHHHhCCCCCCcCCCC
Confidence 9999999999999999 99999999999999975
No 9
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=100.00 E-value=2.6e-99 Score=763.87 Aligned_cols=265 Identities=45% Similarity=0.704 Sum_probs=252.0
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gR 80 (295)
|||||||||||||||++||++|||++++++|||||||||||||||||||+|+|+++||+|++|+|+||||++ ..+++||
T Consensus 70 ml~aav~G~vFaSPs~~qi~~ai~~v~~~~Gvl~ivkNYtGD~lnF~lA~e~a~~eGi~v~~v~v~DDva~~-~~~~~~R 148 (584)
T PTZ00375 70 WLTAAVCGSVFASPSTKHVLAAIEYVPNGPGCLLIVKNYTGDILNFELAVEQARARGIQVETVLVADDAAFG-TKDIANR 148 (584)
T ss_pred ccceeecccccCCCCHHHHHHHHHHhcCCCCEEEEecccHHHHhhHHHHHHHHHhCCCcEEEEEeCCccCCC-CCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997 3458899
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCCCCCCCCcCCCeeEEeccccCCCCcccccC
Q 022582 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (295)
Q Consensus 81 RGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L~~~emE~G~GIHGEpG~~r~~~ 160 (295)
||+|||||||||+||+|++|+||+||++++++++++++||||+|++||+||....|+|++||||||||||||||++|.++
T Consensus 149 RG~AGtv~v~KiaGAaA~~G~~L~ev~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~~~E~G~GIHgEpG~~~~~~ 228 (584)
T PTZ00375 149 RGIAGTVLLYKILGAAAEKGASLTQLKKLADRISSNMRSIGVSLSSCSLPGNDPSSTVPPGTMEVGLGIHGEKGLARIPF 228 (584)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCCCCCCceEecccccCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999943389999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccc--C---CCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccc
Q 022582 161 QPVDVVVSHVLKQILSTE--T---NYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTS 235 (295)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~--~---~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TS 235 (295)
.++++++++|+++|+++. + +++++++||+|+|||||||+||+|||||+++++.++|+++ ||+|+|+|+|+||||
T Consensus 229 ~~a~~l~~~l~~~ll~~~~~~~~~~~~~~~~~d~v~vlvN~LG~t~~~El~i~~~~v~~~l~~~-gi~v~~~~vG~~~TS 307 (584)
T PTZ00375 229 QGAKDLVKFLIGILLGKGKKRGGGKTTAIREGAKVALLVNNLGSTTDLEMSILAHHALRQLAQA-GLTVVGVHSGRLMTS 307 (584)
T ss_pred CCHHHHHHHHHHHHHhhhhccccccccCCCCCCeEEEEEcCCCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEeeeccccc
Confidence 999999999999999861 1 1348899999999999999999999999999999999888 999999999999999
Q ss_pred cCCCcceEEEecccH-HHHH--------hhcCCCCCCCCCC
Q 022582 236 LDMAGFSISIMKADE-VILK--------HLDATTKAPHWPV 267 (295)
Q Consensus 236 ldm~GfSiTLl~ldd-~l~~--------lldap~~ap~w~~ 267 (295)
|||+||||||+++|| +|++ |||+||++|+||.
T Consensus 308 ldm~G~SlTll~l~d~~~~~~~~~p~~~lldapt~apaw~~ 348 (584)
T PTZ00375 308 LEMHGFSLTLLPIEDEDDLQLLDTNQKPLLNFHTPQSSWAT 348 (584)
T ss_pred cCCCccEEEEEecCcHHHHHHhccccHhhhCCCCCCCCCCC
Confidence 999999999999965 5999 8888899999976
No 10
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-97 Score=721.79 Aligned_cols=276 Identities=53% Similarity=0.855 Sum_probs=265.2
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCC
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~-~~g 79 (295)
||||++||+||||||.+|||+|||+|.+.+|+|+|||||||||||||||+|+||++|++||+|+|+||||+++++. ++|
T Consensus 71 mLtaai~G~iFASPstkqI~aairaV~~~~GtLlIVKNYTGD~LhFGLAaErara~G~~ve~v~vgDDvavg~~kg~~vG 150 (582)
T KOG2426|consen 71 MLTAAIAGDIFASPSTKQILAAIRAVEGEAGTLLIVKNYTGDRLHFGLAAERARAAGIKVELVAVGDDVAVGRKKGGKVG 150 (582)
T ss_pred hhhhhhhcccccCCcHHHHHHHHHHhccCCceEEEEeccccceeehhhhHHHHHhcCCceEEEEEccccccCCccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999877 899
Q ss_pred cccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCCCCCCCCcCCCeeEEeccccCCCCccc-c
Q 022582 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAV-A 158 (295)
Q Consensus 80 RRGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L~~~emE~G~GIHGEpG~~r-~ 158 (295)
||||||||||||||||+|++|++|+||.++++.+++|+.||||+|+||++||+++.++|++||||+|||||||||++| .
T Consensus 151 RRGLagTVLvHKIAGAaA~~Gl~Le~va~~ak~v~dn~~Tig~SL~hc~vPG~k~e~eL~~de~ElGmGIHnEpG~~r~~ 230 (582)
T KOG2426|consen 151 RRGLAGTVLVHKIAGAAAAEGLSLEEVAKVAKSVVDNMGTIGVSLDHCSVPGRKPEDELGADEMELGMGIHNEPGVKRIS 230 (582)
T ss_pred cccccceeeeehhhhHHHHccCCHHHHHHHHHHHHHhhhhheeeeeeeccCCCCcccccCccceeecccccCCCCceecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988 5
Q ss_pred cCCCHHHHHHHHHHHHHccc--CCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccccc
Q 022582 159 DLQPVDVVVSHVLKQILSTE--TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (295)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~~--~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSl 236 (295)
+++|.++||.+||++|++++ |+|+++++||+|++|||||||+|.|||.+++..+.++|+.+|||.|+|+|.|+|||||
T Consensus 231 p~ps~d~lVs~mL~~ll~~~~drs~V~~~~~d~VVllVNNLGG~S~lEl~~ia~~v~~~L~~~y~I~p~R~~~G~fmTsL 310 (582)
T KOG2426|consen 231 PIPSIDELVSQMLPQLLDPTKDRSYVKFEEGDEVVLLVNNLGGVSNLELGIIAGKVVEQLEDEYGIGPVRTFAGTFMTSL 310 (582)
T ss_pred CCCCHHHHHHHHHHHhcCCccccccccccCCCeEEEEEcCCCCcchhhhHHHHHHHHHHHHhhcCccceEEEeeeeeeec
Confidence 66669999999999999984 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEecc---------cHHHHHhhcCCCCCCCCCCCC--CCCCCCC
Q 022582 237 DMAGFSISIMKA---------DEVILKHLDATTKAPHWPVGV--DGNRPPA 276 (295)
Q Consensus 237 dm~GfSiTLl~l---------dd~l~~lldap~~ap~w~~~~--~~~~~~~ 276 (295)
||+||||||||. |+.+++|+|+|+++|.||... .++.|++
T Consensus 311 ng~GfsITll~atka~~~f~~~~s~l~~lda~~~A~~Wp~~~~~~v~~~~~ 361 (582)
T KOG2426|consen 311 NGPGFSITLLNATKATKYFDEDTSLLDLLDAPTNAPGWPVAAPGKVPTPPI 361 (582)
T ss_pred cCCcceEEEEeccccccccCCCccHHHhhhCcccCCCCcccCcccCCCCCC
Confidence 999999999999 788999999999999999654 4444443
No 11
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-80 Score=587.22 Aligned_cols=255 Identities=45% Similarity=0.721 Sum_probs=248.5
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCC-CCCC
Q 022582 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIAG 79 (295)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~-~~~g 79 (295)
||+|+++|++|+||+++|||++|+++..++|++++++||+||+|||+||+|+++++|++|+.++|+|||++.++. ..++
T Consensus 67 ml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~gd~mnf~~A~e~a~~~gi~v~~v~v~ddva~~~~rg~~~~ 146 (323)
T COG2376 67 MLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYGGDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQSRGKAEG 146 (323)
T ss_pred HHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchHHHHHHHHHHHhhhhhcCCceEEEEeecccccccccccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999875 4799
Q ss_pred cccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCcCCCeeEEeccccCCCCcccc
Q 022582 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (295)
Q Consensus 80 RRGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emE~G~GIHGEpG~~r~ 158 (295)
|||++|++||+||+||+|++|+||+++.+++++++++++|+|+++++|++|+ ++ |.+++||||+|+|||||||++|+
T Consensus 147 rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~~s~Gv~lt~~~vp~~Gr--f~~~~gE~elG~gihGe~g~~~~ 224 (323)
T COG2376 147 RRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNAASIGVALTPCTVPTKGR--ASLGLGERSLGHGIHGEPGVRRE 224 (323)
T ss_pred CCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHhcCcccccccCc--cccCCCCEeeccccCCCCcchHH
Confidence 9999999999999999999999999999999999999999999999999999 65 99999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCC
Q 022582 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (295)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm 238 (295)
+++++++++++|+++|+++ ++++ |+|+|||||||+||++|||+++++|.++|+++ ||+|+|+++|+|||||||
T Consensus 225 ~l~s~~e~~~el~~~l~~~-----~~~~-~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~-~i~i~~~~~G~~~Tsl~m 297 (323)
T COG2376 225 ILKSADELAKELVDKLLAE-----KLEQ-DEVAVLVNGLGATPLMELYILYNRVARLLAAK-GITIERTLVGNYMTSLDM 297 (323)
T ss_pred hHHhHHHHHHHHHHHHhcc-----cCCC-CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeecceeccccc
Confidence 9999999999999999985 6777 99999999999999999999999999999999 999999999999999999
Q ss_pred CcceEEEecccHHHHHhhcCCCCCCCC
Q 022582 239 AGFSISIMKADEVILKHLDATTKAPHW 265 (295)
Q Consensus 239 ~GfSiTLl~ldd~l~~lldap~~ap~w 265 (295)
+||||||+++|+||++|||+||++ .|
T Consensus 298 ~G~sitl~~~d~~~~~~~~~p~~~-~~ 323 (323)
T COG2376 298 AGFSITLLKLDDELLDLLDAPVDT-RW 323 (323)
T ss_pred CCceEEEEeCCHHHHHHhcCcCCC-CC
Confidence 999999999999999999999999 55
No 12
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=92.19 E-value=11 Score=39.11 Aligned_cols=180 Identities=23% Similarity=0.246 Sum_probs=117.0
Q ss_pred ceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhc-CCcEEEEEecccccCCCCCCCCCcc
Q 022582 3 TAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE-GYKVEIVIVGDDCALPPPRGIAGRR 81 (295)
Q Consensus 3 dAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~-Gi~v~~viV~DDva~~~~~~~~gRR 81 (295)
+..+.|.==.-||+.+|++||+.++... |+++=+|. |.=||+|+|... +.+|..|- .+. =-.
T Consensus 336 ~~vi~ggqt~nPS~~dll~ai~~~~a~~-V~iLPNn~-----nii~aA~qa~~~~~~~v~vvp---------T~s--~~q 398 (530)
T TIGR03599 336 DVVIEGGQTMNPSTEDILKAIEKVNAKN-VFVLPNNK-----NIILAAEQAAELADKNVVVIP---------TKT--IVQ 398 (530)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEecCCc-----cHHHHHHHHHHHhCCcEEEEe---------CCC--HHH
Confidence 3455665434799999999999987655 77777663 888999998754 44444432 121 122
Q ss_pred cccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeecc--ccccCCCCCCCCcCCCeeEEeccccCCCCccccc
Q 022582 82 GLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS--VCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (295)
Q Consensus 82 GlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals--~c~~Pg~~~~f~L~~~emE~G~GIHGEpG~~r~~ 159 (295)
|++.. ++=+...++++-.+.-.++..+++|.-|... .-++.+ ..+.+|+. +||-+.-=+...
T Consensus 399 giaAl--------~~fdp~~~~~~n~~~M~ea~~~v~~g~vt~A~rd~~~~~----~~i~~gd~---igi~~~~i~~~~- 462 (530)
T TIGR03599 399 GLAAL--------LVFDPEASLEDNKEAMEEAIKAVRSGEVTYAVRDTKING----LEIKKGDF---LGIVDGKIIAVG- 462 (530)
T ss_pred HHHHH--------HhhCCCCCHHHHHHHHHHHHhcCeEEEEEEEeccceecC----eeecCCCE---eEecCCeEEEec-
Confidence 33211 2235788999999999999999998777433 222222 23344443 444332212222
Q ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEeeee
Q 022582 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYTG 230 (295)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~-gi~v~r~~vG 230 (295)
++..+.+..+++++++ ++.+++-++-|=+.+.. .++.+.++++++| ++++.-.+-|
T Consensus 463 -~d~~~~~~~ll~~l~~---------~~~elvTi~~G~~~~~~-----~~~~l~~~i~~~~~~veve~~~Gg 519 (530)
T TIGR03599 463 -KDPEDAAKKLLDKLLD---------EDSELITIFYGEDATEE-----EAEELEAFIEEKYPDVEVEIYEGG 519 (530)
T ss_pred -CCHHHHHHHHHHHHhc---------CCCeEEEEEECCCCCHH-----HHHHHHHHHHhhCCCcEEEEEECC
Confidence 3677888888888865 37789988888877765 5577788888888 7888866655
No 13
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=88.22 E-value=2.9 Score=42.81 Aligned_cols=176 Identities=17% Similarity=0.161 Sum_probs=100.2
Q ss_pred CHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhHHHHHh
Q 022582 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (295)
Q Consensus 15 s~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gRRGlAGtvlv~KiaG 94 (295)
+++.|.+||..++++.|||+++ ----=+||-+||.|+...+ .+-+.. +.| .|- +=|++ .|-
T Consensus 48 ~~~~i~~ai~~~~~~~gv~v~~-DlGSa~~~~e~a~e~~~~~-~~~~v~-~~~---apl---------VEg~~----~aa 108 (473)
T PRK11377 48 DAVKVMEAIESVADADHVLVMM-DMGSALLSAETALELLDPE-IAAKVR-LCA---APL---------VEGTL----AAT 108 (473)
T ss_pred CHHHHHHHHHhccCCCCEEEEE-ecchHHhHHHHHHHhhccc-ccceEE-Eec---Cch---------HhHHH----HHH
Confidence 5689999999999999999998 3344589999999998543 222222 222 111 11222 234
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhc-cceeeccccccCC-CCCCCCcCCCeeEEeccccCCCCcccccCCCHHHHHHHHHH
Q 022582 95 AAAAAGLSLADVAAEAKRASEMVG-TMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLK 172 (295)
Q Consensus 95 AaAe~G~~L~ev~~~a~~~~~~~~-Tigvals~c~~Pg-~~~~f~L~~~emE~G~GIHGEpG~~r~~~~~a~~lv~~ml~ 172 (295)
.+|..|.+|++|.+.++.+...-. ..|... ..|. ..+.-..+.+..+.=+-|.++-|..-.| +..+++..-+
T Consensus 109 v~a~~g~~l~~v~~~~~~a~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~n~~GLHARP---Aa~lv~~a~~ 182 (473)
T PRK11377 109 VSAASGADIDKVIFDAMHALEAKREQLGLPS---SDTEISDTCPAYDEEARSLSVVIKNRNGLHVRP---ASRLVYTLST 182 (473)
T ss_pred HHhccCCCHHHHHHHHHHHhHHHHHhcCCCC---CCcccCCCCCcccccceEEEEEEcCCCCCcHhH---HHHHHHHHhh
Confidence 567899999999999998765433 344322 1111 1111122445666666666666654332 3344433322
Q ss_pred HH----Hc-cc-----CC-----CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcC
Q 022582 173 QI----LS-TE-----TN-----YVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHG 221 (295)
Q Consensus 173 ~l----l~-~~-----~~-----~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~g 221 (295)
.= +. +. ++ .+..+.||++.+.++|=- |.- ....+.+++++.+|
T Consensus 183 f~s~I~i~~~g~~vdakSi~~lm~Lg~~~Gd~v~i~a~G~D-----e~~-Al~~l~~l~~~~fg 240 (473)
T PRK11377 183 FNADMLLEKNGKCVTPESLNQIALLQVRYNDTLRLIAKGPE-----AEE-ALIAFRQLAEDNFG 240 (473)
T ss_pred CCCeEEEEECCeEEchHhHHHHHhcCCCCCCEEEEEEeCcC-----HHH-HHHHHHHHHHhccC
Confidence 20 00 00 00 256678999999999732 221 22555566665544
No 14
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=86.97 E-value=3.7 Score=34.64 Aligned_cols=78 Identities=29% Similarity=0.316 Sum_probs=54.8
Q ss_pred CHHHHHHHHHhccC-CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhHHHH-
Q 022582 15 PVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKI- 92 (295)
Q Consensus 15 s~~qIl~ai~~v~~-~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gRRGlAGtvlv~Ki- 92 (295)
++++|.++|+.+++ +.|||+++== -|=+||.++|.|+.+.+.. +.|..-| . =+|...
T Consensus 44 ~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~--~~v~g~n-l-----------------Plvega~ 102 (125)
T TIGR02364 44 SPDKIIEAIEKADNEADGVLIFYDL-GSAVMNAEMAVELLEDEDR--DKVHLVD-A-----------------PLVEGAF 102 (125)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEEcC-CCcHhHHHHHHHHhccccc--cEEEEec-h-----------------hHHHHHH
Confidence 56889999999966 8999998844 8889999999999876543 2222211 1 233333
Q ss_pred HhH-HHHcCCCHHHHHHHHHHH
Q 022582 93 AGA-AAAAGLSLADVAAEAKRA 113 (295)
Q Consensus 93 aGA-aAe~G~~L~ev~~~a~~~ 113 (295)
+.| .|..|.+|+||++.++..
T Consensus 103 ~aa~~~~~g~~l~~v~~~~~~~ 124 (125)
T TIGR02364 103 AAAVEAQVGASIEQVLAEALQA 124 (125)
T ss_pred HHHHHHcCCCCHHHHHHHHHhc
Confidence 333 345899999999887753
No 15
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=86.35 E-value=1.9 Score=36.60 Aligned_cols=77 Identities=30% Similarity=0.401 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhHHHHHh
Q 022582 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (295)
Q Consensus 15 s~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gRRGlAGtvlv~KiaG 94 (295)
+.++|.+||+.+++ .|||+++== -|=.||-.+|.|+.+.+ .+| .+.| . | . +=|.+ .|-
T Consensus 44 ~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n~~~a~e~~~~~-~~v---~~~d-a---P---l-----VEGa~----~Aa 101 (124)
T PRK14484 44 SFDQIQEAIEKNES-DGVLIFFDL-GSAEMNAEMAIEMLDGE-KKI---IIID-A---P---I-----VEGAF----TAA 101 (124)
T ss_pred hHHHHHHHHHhcCc-CCeEEEEeC-CChHHHHHHHHHhcCCC-CcE---EEEC-C---c---H-----HHHHH----HHH
Confidence 57899999999999 999999855 88899999999999655 333 3333 1 1 0 01111 233
Q ss_pred HHHHcCCCHHHHHHHHHHH
Q 022582 95 AAAAAGLSLADVAAEAKRA 113 (295)
Q Consensus 95 AaAe~G~~L~ev~~~a~~~ 113 (295)
..|..|.+|++|++.++..
T Consensus 102 v~~~~g~~l~~v~~~~~~~ 120 (124)
T PRK14484 102 VLLSAGASLDEILAELKEL 120 (124)
T ss_pred HHHcCCCCHHHHHHHHHHh
Confidence 4567899999999988864
No 16
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=80.68 E-value=2.2 Score=41.97 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=44.3
Q ss_pred eeecCCccCCCCHHHHHHHHHhccCCCceEEEeecccc----ccccHHHHHHHHHhcCCc
Q 022582 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG----DRLNFGLAAEQAKSEGYK 59 (295)
Q Consensus 4 Aav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtG----D~lNFgmA~E~A~~~Gi~ 59 (295)
.+..||+|+|..-.|.-.|++.+....|||+..- ..| |--+||+++++.+.-|++
T Consensus 252 ec~tgd~l~~~~~~qL~~Al~~I~~eGGvlvYLr-qegr~an~~RdygigaqIL~dLGi~ 310 (339)
T PRK09314 252 IGSDFELLTSDKFSELLKAIEYLKKNGGVLIFLN-TESKENNQVKDYGIGAQILKYLGIK 310 (339)
T ss_pred cCChHHhhCCCcHHHHHHHHHHHHHcCCEEEEEc-CCCCCcccccchhHHHHHHHHCCCC
Confidence 3567999999988899999998765449987653 333 578999999999999986
No 17
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=75.18 E-value=5.3 Score=36.05 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.4
Q ss_pred eeecCCccCCCCH---HHHHHHHHhcc-CCCceEEEeec
Q 022582 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTN 38 (295)
Q Consensus 4 Aav~G~VFaSPs~---~qIl~ai~~v~-~~~GvL~iv~N 38 (295)
.+..||||.|... .|+..|++.+. .+.|||+.+.+
T Consensus 53 ~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~G~GVlVyL~~ 91 (197)
T PRK00393 53 ECLTGDALFSLRCDCGFQLEAALERIAEEGRGILLYLRQ 91 (197)
T ss_pred ccCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcC
Confidence 3567899987633 68888999975 57799987743
No 18
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=74.33 E-value=3.8 Score=40.72 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=39.0
Q ss_pred ceeecCCccCCC----CHHHHHHHHHhcc-CCCceEEEeecccc------------------------ccccHHHHHHHH
Q 022582 3 TAAICGDVFASP----PVDSILAGIHAVT-GPMGCLLIVTNYTG------------------------DRLNFGLAAEQA 53 (295)
Q Consensus 3 dAav~G~VFaSP----s~~qIl~ai~~v~-~~~GvL~iv~NYtG------------------------D~lNFgmA~E~A 53 (295)
+.+..||||-|. .-.|...|++.+. .+.|||+...|-.| |--+||+|+++.
T Consensus 255 SecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~~~~gl~~kl~a~~~~~~~~~~~d~r~~r~ygigAqIL 334 (369)
T PRK12485 255 VIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHESSQALLERIPQLTQPPRQYQRSQSRIYSEVGTGAQIL 334 (369)
T ss_pred cccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCCchhhHHHHHHHHHhHhhCCCcccchhhhhhhHHHHHH
Confidence 346789999884 3468999999976 56699886653222 011567777777
Q ss_pred HhcCCc
Q 022582 54 KSEGYK 59 (295)
Q Consensus 54 ~~~Gi~ 59 (295)
+.-|++
T Consensus 335 r~LGV~ 340 (369)
T PRK12485 335 QDLGVG 340 (369)
T ss_pred HHcCCC
Confidence 777765
No 19
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=73.52 E-value=2.3 Score=37.42 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=37.6
Q ss_pred eeecCCccCC---CCHHHHHHHHHhcc-CCCceEEEeec-------------------------------cccccccHHH
Q 022582 4 AAICGDVFAS---PPVDSILAGIHAVT-GPMGCLLIVTN-------------------------------YTGDRLNFGL 48 (295)
Q Consensus 4 Aav~G~VFaS---Ps~~qIl~ai~~v~-~~~GvL~iv~N-------------------------------YtGD~lNFgm 48 (295)
.+..||+|-| ....|+-.|++.+. .+.|||+...+ +..|-=+||+
T Consensus 51 ~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G~GVlVyL~~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygi 130 (169)
T PF00925_consen 51 ECLTGDVFGSLRCDCGWQLDKAMRRIAEEGRGVLVYLRQEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGI 130 (169)
T ss_dssp --HHHHTS--SSSSHHHHHHHHHHHHHHHTSEEEEEE--TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THH
T ss_pred cccHhhhcCCCCCCCcHHHHHHHHHHHHcCCEEEEEEcCCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHH
Confidence 4567999998 66788888998886 57899999921 1256678888
Q ss_pred HHHHHHhcCCcEEEEEe
Q 022582 49 AAEQAKSEGYKVEIVIV 65 (295)
Q Consensus 49 A~E~A~~~Gi~v~~viV 65 (295)
+++..+.-|++ +|.+.
T Consensus 131 gaqIL~dLGV~-~~rLL 146 (169)
T PF00925_consen 131 GAQILRDLGVK-KMRLL 146 (169)
T ss_dssp HHHHHHHTT---SEEEE
T ss_pred HHHHHHHcCCC-EEEEC
Confidence 88888888876 44443
No 20
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=72.72 E-value=6.5 Score=35.25 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=25.9
Q ss_pred eeecCCccCCCCH---HHHHHHHHhcc-CCCceEEEee
Q 022582 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (295)
Q Consensus 4 Aav~G~VFaSPs~---~qIl~ai~~v~-~~~GvL~iv~ 37 (295)
.+..||||.|... .|+.+|++.+. .+.|||+.+.
T Consensus 50 ~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~GVlVyL~ 87 (191)
T TIGR00505 50 ECLTGDALHSLRCDCGFQLEAALKQIAEEGRGVLIYLR 87 (191)
T ss_pred ccCHHHHhcCCCCCCCchHHHHHHHHHhcCCEEEEEEC
Confidence 3567899987533 78888999875 6779988774
No 21
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=71.94 E-value=7.2 Score=34.92 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=25.7
Q ss_pred eeecCCccCCCCH---HHHHHHHHhcc-CCCceEEEee
Q 022582 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (295)
Q Consensus 4 Aav~G~VFaSPs~---~qIl~ai~~v~-~~~GvL~iv~ 37 (295)
.+..+|+|.+... .|+..|++.+. .+.|||+++.
T Consensus 52 ~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~g~GVlV~l~ 89 (193)
T cd00641 52 ECLTGDVFGSLRCDCGPQLEEALEEIAEEGGGVLLYLR 89 (193)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHhCCEEEEEEC
Confidence 3567899986533 67888999975 5679988774
No 22
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=69.48 E-value=14 Score=34.51 Aligned_cols=195 Identities=14% Similarity=0.132 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHHh-ccCCCc-eEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchh
Q 022582 12 ASPPVDSILAGIHA-VTGPMG-CLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (295)
Q Consensus 12 aSPs~~qIl~ai~~-v~~~~G-vL~iv--~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gRRGlAGtv 87 (295)
+.|++.++.++.+. ...+.- ||+|- ...+|=-=|.-+|+++. .+.+|.. + | -|-.-+|.-
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~V--i-D-----------S~~~s~g~g 124 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHV--I-D-----------SKSVSAGQG 124 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEE--E-E------------SS-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEE--E-e-----------CCCcchhhh
Confidence 46899999999987 665544 77664 34556555666666666 3444332 2 2 134446666
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeecc------ccccCC----------CCCCCCcCCCeeEEeccccC
Q 022582 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS------VCTLPG----------QVTSDRLGPGKMELGLGIHG 151 (295)
Q Consensus 88 lv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals------~c~~Pg----------~~~~f~L~~~emE~G~GIHG 151 (295)
++..-|-.++++|.|++||.+..++..+++.+.=+-=+ +--++. =+|-..+.+|+++.
T Consensus 125 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~------ 198 (280)
T PF02645_consen 125 LLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNLLNIKPILSFDDGEIEP------ 198 (280)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHCTTEEEEEEEETTEEEE------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhhhcCcEEEEEECCEEEE------
Confidence 66777779999999999999999999999887644222 111111 01223333444432
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeee
Q 022582 152 EPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTG 230 (295)
Q Consensus 152 EpG~~r~~~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi-~v~r~~vG 230 (295)
..+..+.+..++.|++.+.+. .. ...+..+.+...- .. |. +.++.+.|+++++. ++....+|
T Consensus 199 -----~~k~Rg~kka~~~l~~~~~~~----~~-~~~~~~i~i~~~~---~~-e~---a~~l~~~l~~~~~~~~~~~~~~~ 261 (280)
T PF02645_consen 199 -----VGKVRGRKKAIKKLIEIIKEE----IK-DPKNYRIAISHAG---NE-EE---AEELKEELKEEFPNAEIIISPIG 261 (280)
T ss_dssp -----EEEESSHHHHHHHHHHHHHHH----HC-TGCGEEEEEEESS----H-HH---HHHHHHHHHHHSTTEEEEEEE--
T ss_pred -----EeeeccHHHHHHHHHHHhhhh----hh-cCCceeEEEEEcC---CH-HH---HHHHHHHHHHhcCCCcEEEEEEC
Confidence 345566677888888877432 11 1223334444422 22 33 34555666666565 55556666
Q ss_pred ccccc-cCCCcceEEE
Q 022582 231 SFMTS-LDMAGFSISI 245 (295)
Q Consensus 231 ~~~TS-ldm~GfSiTL 245 (295)
+-+++ .+-..|.|..
T Consensus 262 ~~i~~H~Gpg~igi~~ 277 (280)
T PF02645_consen 262 PVIGAHTGPGAIGIAF 277 (280)
T ss_dssp HHHHHHH-TTEEEEEE
T ss_pred cEEEEEECCCeEEEEE
Confidence 55543 3333444443
No 23
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=67.97 E-value=6 Score=40.37 Aligned_cols=39 Identities=18% Similarity=0.444 Sum_probs=29.0
Q ss_pred ceeecCCccCCCCH---HHHHHHHHhcc-CCCceEEEeecccc
Q 022582 3 TAAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNYTG 41 (295)
Q Consensus 3 dAav~G~VFaSPs~---~qIl~ai~~v~-~~~GvL~iv~NYtG 41 (295)
+.+..||||-|..- .|+-+|++.+. .|.|||+..-|-.|
T Consensus 290 Sec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qeg 332 (450)
T PLN02831 290 SECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEG 332 (450)
T ss_pred ccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCCc
Confidence 35678999998643 68888999975 67799887753443
No 24
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=66.35 E-value=17 Score=34.02 Aligned_cols=95 Identities=23% Similarity=0.151 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHhcc-CCCceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhh
Q 022582 12 ASPPVDSILAGIHAVT-GPMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (295)
Q Consensus 12 aSPs~~qIl~ai~~v~-~~~GvL~iv--~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gRRGlAGtvl 88 (295)
+.||+.++.++.+.+. .+.-||+|- ..-+|=-=|+-+|+++.. +++ |.|=| -|-.-+|.-+
T Consensus 60 S~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~--~~~---i~ViD-----------S~~~s~~~g~ 123 (275)
T TIGR00762 60 SQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVD--EAK---VTVID-----------SKSASMGLGL 123 (275)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCC--CCC---EEEEC-----------ChHHHHHHHH
Confidence 3478888999987654 344566654 344554445556555542 233 33333 2445577788
Q ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccee
Q 022582 89 VNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGV 122 (295)
Q Consensus 89 v~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigv 122 (295)
+..-|..+.++|.+++||.+..++..+++.+.=+
T Consensus 124 ~v~~a~~~~~~G~s~~eI~~~l~~~~~~~~~~f~ 157 (275)
T TIGR00762 124 LVLEAAKLAEEGKSLEEILAKLEELRERTKLYFV 157 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEE
Confidence 8889999999999999999999999999887644
No 25
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=65.81 E-value=8.4 Score=38.28 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=39.8
Q ss_pred eeecCCccCCC---CHHHHHHHHHhcc-CCCceEEEeecc-cc---------------------ccccHHHHHHHHHhcC
Q 022582 4 AAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNY-TG---------------------DRLNFGLAAEQAKSEG 57 (295)
Q Consensus 4 Aav~G~VFaSP---s~~qIl~ai~~v~-~~~GvL~iv~NY-tG---------------------D~lNFgmA~E~A~~~G 57 (295)
.+..||||-|- ...|+..|++.+. .|.|||+...|- .| |-=+||+|+++.+.-|
T Consensus 256 ~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~qegrgigl~~k~~~~~~an~~lg~~~d~R~y~igaqIL~~Lg 335 (367)
T PRK14019 256 PLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQILRDLG 335 (367)
T ss_pred ccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEccCCchhhHHHhhhhhhhhhhhcCCCcccceehHHHHHHHHcC
Confidence 46789999874 3678999999975 567998877543 12 3446777777777777
Q ss_pred Cc
Q 022582 58 YK 59 (295)
Q Consensus 58 i~ 59 (295)
++
T Consensus 336 v~ 337 (367)
T PRK14019 336 VG 337 (367)
T ss_pred CC
Confidence 64
No 26
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.88 E-value=12 Score=32.19 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhHHHHH
Q 022582 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (295)
Q Consensus 14 Ps~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gRRGlAGtvlv~Kia 93 (295)
-|++.|.+||...+..+++|+++ ---.-+||-+||.|+...+ +.++.+++ | .|--+ |.+ .|
T Consensus 44 Ts~~~I~~aI~~~~~ad~~lif~-DlGSA~mn~e~a~El~d~e-i~~~~~~~-d---aPlVE---------Ga~----~A 104 (129)
T COG3412 44 TSFEKIMEAIEKANEADHVLVFY-DLGSAKLNAEMALELLDKE-IAIKNILC-D---APLVE---------GAY----AA 104 (129)
T ss_pred cCHHHHHHHHHhccccCceEEEE-ecchhhhhHHHHHHHhcch-HHHHhhhc-c---cchhh---------hHH----HH
Confidence 46799999999988888888887 6667799999999998554 45444322 1 22111 111 23
Q ss_pred hHHHHcCCCHHHHHHHHHH
Q 022582 94 GAAAAAGLSLADVAAEAKR 112 (295)
Q Consensus 94 GAaAe~G~~L~ev~~~a~~ 112 (295)
-+.++.|.|++||..-..+
T Consensus 105 aa~~~~ga~~~evi~~~~e 123 (129)
T COG3412 105 AALLQGGASIDEVIAEALE 123 (129)
T ss_pred HHHHhcCCCHHHHHHHHHh
Confidence 4556789999888765443
No 27
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=61.89 E-value=23 Score=32.82 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 022582 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (295)
Q Consensus 12 aSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva 70 (295)
...+++++-++++.-...+.|++.--||+|.+.+..--++.+++.|+ .++-|+.-
T Consensus 138 ~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~----~livDeA~ 192 (294)
T cd00615 138 GGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGL----PVLVDEAH 192 (294)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCC----eEEEECcc
Confidence 45688899888876444455555556999999999888899988874 34555553
No 28
>PRK08815 GTP cyclohydrolase; Provisional
Probab=61.50 E-value=7.8 Score=38.66 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=29.1
Q ss_pred ceeecCCccCCC---CHHHHHHHHHhcc-CCCceEEEeecccccc
Q 022582 3 TAAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNYTGDR 43 (295)
Q Consensus 3 dAav~G~VFaSP---s~~qIl~ai~~v~-~~~GvL~iv~NYtGD~ 43 (295)
+.+..||||-|- .-.|.-+|++.+. .|.|||+.. |-.|-.
T Consensus 223 s~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL-~qegrg 266 (375)
T PRK08815 223 SSCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGRG 266 (375)
T ss_pred ccCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEE-cCCCcc
Confidence 346789999875 3478888999975 677998876 545433
No 29
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=60.94 E-value=18 Score=31.44 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=57.3
Q ss_pred cCCC-eeEEeccccCCCCcccccCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhh
Q 022582 138 LGPG-KMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNL 216 (295)
Q Consensus 138 L~~~-emE~G~GIHGEpG~~r~~~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L 216 (295)
|+++ ---+|+-.+|.. ....+..+.+++++..++.|... .+..++.++=-.+|| +++-++.++|
T Consensus 23 l~~~~~~v~~i~~~~~~-~~~~~~~si~~la~~y~~~I~~~-------~~~gp~~L~G~S~Gg-------~lA~E~A~~L 87 (229)
T PF00975_consen 23 LPDDVIGVYGIEYPGRG-DDEPPPDSIEELASRYAEAIRAR-------QPEGPYVLAGWSFGG-------ILAFEMARQL 87 (229)
T ss_dssp HTTTEEEEEEECSTTSC-TTSHEESSHHHHHHHHHHHHHHH-------TSSSSEEEEEETHHH-------HHHHHHHHHH
T ss_pred CCCCeEEEEEEecCCCC-CCCCCCCCHHHHHHHHHHHhhhh-------CCCCCeeehccCccH-------HHHHHHHHHH
Confidence 4443 334455544443 34566789999999999999763 222389999999997 7888888999
Q ss_pred hhhcCCeEEEee-eeccccc
Q 022582 217 QLEHGLAVERVY-TGSFMTS 235 (295)
Q Consensus 217 ~~~~gi~v~r~~-vG~~~TS 235 (295)
+++ |.+|.+++ +..+.+.
T Consensus 88 e~~-G~~v~~l~liD~~~p~ 106 (229)
T PF00975_consen 88 EEA-GEEVSRLILIDSPPPS 106 (229)
T ss_dssp HHT-T-SESEEEEESCSSTT
T ss_pred HHh-hhccCceEEecCCCCC
Confidence 999 99998765 4545444
No 30
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=55.88 E-value=13 Score=37.37 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=27.9
Q ss_pred ceeecCCccCCCC---HHHHHHHHHhcc-CCCceEEEeeccc
Q 022582 3 TAAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVTNYT 40 (295)
Q Consensus 3 dAav~G~VFaSPs---~~qIl~ai~~v~-~~~GvL~iv~NYt 40 (295)
+.+..||||-|-. ..|+-+|++.+. .+.|||+...|-.
T Consensus 256 s~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~~qe 297 (402)
T PRK09311 256 SECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQE 297 (402)
T ss_pred ccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEecCC
Confidence 3567899998743 478888999975 6779988776333
No 31
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=54.29 E-value=18 Score=32.83 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=28.3
Q ss_pred eecCCccC--------CCCHHHHHHHHHhcc-CCCceEEEeeccc
Q 022582 5 AICGDVFA--------SPPVDSILAGIHAVT-GPMGCLLIVTNYT 40 (295)
Q Consensus 5 av~G~VFa--------SPs~~qIl~ai~~v~-~~~GvL~iv~NYt 40 (295)
.++||+|- +|....+.+.++... .+..|.++.+|+-
T Consensus 37 ~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD 81 (241)
T PRK05340 37 YILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRD 81 (241)
T ss_pred EEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 47899994 466778888887775 4578999999995
No 32
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=48.74 E-value=1e+02 Score=28.05 Aligned_cols=63 Identities=24% Similarity=0.408 Sum_probs=36.9
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhh-cCCeEEEe
Q 022582 151 GEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE-HGLAVERV 227 (295)
Q Consensus 151 GEpG~~r~~~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~-~gi~v~r~ 227 (295)
+=||.-..+..+...+++.+++.|... |=+-+++||+=|+ +. -..+.+.+.|..+ .++.+...
T Consensus 72 ~fpGTisl~~~t~~~~l~di~~sl~~~---------Gf~~ivivngHgG--N~---~~l~~~~~~l~~~~~~~~v~~~ 135 (237)
T PF02633_consen 72 GFPGTISLSPETLIALLRDILRSLARH---------GFRRIVIVNGHGG--NI---AALEAAARELRQEYPGVKVFVI 135 (237)
T ss_dssp TSTT-BBB-HHHHHHHHHHHHHHHHHH---------T--EEEEEESSTT--HH---HHHHHHHHHHHHHGCC-EEEEE
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHc---------CCCEEEEEECCHh--HH---HHHHHHHHHHHhhCCCcEEEEe
Confidence 357766666566667777777777643 5567999999999 22 2345555555555 47766543
No 33
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=48.71 E-value=87 Score=30.65 Aligned_cols=127 Identities=13% Similarity=0.194 Sum_probs=86.5
Q ss_pred HHHhhhccceeeccccccCC-CCCCCCcCCC----eeEEeccccCCCCcccccCCCHHHHHHHHHHHHHcccCCCCCCCC
Q 022582 112 RASEMVGTMGVALSVCTLPG-QVTSDRLGPG----KMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITR 186 (295)
Q Consensus 112 ~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~----emE~G~GIHGEpG~~r~~~~~a~~lv~~ml~~ll~~~~~~l~~~~ 186 (295)
.+.+.++..|+-..-+.++| .+.++.|-++ |-|| ++||-.- +.+++ +++++++... +++
T Consensus 66 ~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tei-----n~~Gp~i----s~~~~-~~~l~~~~~~------l~~ 129 (310)
T COG1105 66 FFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEI-----NFPGPEI----SEAEL-EQFLEQLKAL------LES 129 (310)
T ss_pred HHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEe-----cCCCCCC----CHHHH-HHHHHHHHHh------ccc
Confidence 34456677788888888888 6677776544 4554 5777432 33344 7777776431 344
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccc-cccCCCcceEEEeccc-HHHHHhhcCCCCC
Q 022582 187 GNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFM-TSLDMAGFSISIMKAD-EVILKHLDATTKA 262 (295)
Q Consensus 187 gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~-TSldm~GfSiTLl~ld-d~l~~lldap~~a 262 (295)
.| + |.++ |+.|+-=-.-.|.++.+.++++ |.++.---.|..+ .+|+++ -.|+|-+ +|+..++..|-..
T Consensus 130 ~d-~-Vvls--GSlP~g~~~d~y~~li~~~~~~-g~~vilD~Sg~~L~~~L~~~---P~lIKPN~~EL~~~~g~~~~~ 199 (310)
T COG1105 130 DD-I-VVLS--GSLPPGVPPDAYAELIRILRQQ-GAKVILDTSGEALLAALEAK---PWLIKPNREELEALFGRELTT 199 (310)
T ss_pred CC-E-EEEe--CCCCCCCCHHHHHHHHHHHHhc-CCeEEEECChHHHHHHHccC---CcEEecCHHHHHHHhCCCCCC
Confidence 44 3 4455 4555443346788999999998 9999988888766 589998 8888876 6787887777653
No 34
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=48.15 E-value=40 Score=27.32 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=36.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeee
Q 022582 188 NRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (295)
Q Consensus 188 d~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG 230 (295)
+-+.+=|...|+.+.-..--+++++.+.|++.+|+.+.|+|+-
T Consensus 57 p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 57 GCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred ceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 3355667778998887777899999999999999999999984
No 35
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=46.26 E-value=2.8e+02 Score=26.75 Aligned_cols=182 Identities=20% Similarity=0.267 Sum_probs=104.9
Q ss_pred ceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhc--CCcEEEEEecccccCCCCCCCCCc
Q 022582 3 TAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGR 80 (295)
Q Consensus 3 dAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~--Gi~v~~viV~DDva~~~~~~~~gR 80 (295)
+..+.|.-=-.||+..+++||+.++... |+++-.| -|.-||+++|.+. +-+|..| |.+ .=-
T Consensus 118 ~~vi~ggqt~nPS~~dl~~Ai~~~~a~~-VivLPNn-----~ni~~aa~qa~~~~~~~~v~Vi---------pTk--s~~ 180 (313)
T PF13684_consen 118 DVVISGGQTMNPSTEDLLNAIEKVGADE-VIVLPNN-----KNIILAAEQAARLSEDKNVVVI---------PTK--SIP 180 (313)
T ss_pred eEEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEEeCC-----chHHHHHHHHHHHhcCCCEEEE---------ecC--CHH
Confidence 3455565545799999999999986544 6666644 4667777776642 2232222 111 112
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCCCCCCCCcCCCeeEEeccccCCCCcccccC
Q 022582 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (295)
Q Consensus 81 RGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L~~~emE~G~GIHGEpG~~r~~~ 160 (295)
.|++.. ++-+...++++-.+.-+++..+++|.-+...... +.-..+.+..|+. +||.+.--+...
T Consensus 181 qGlaAl--------~~~dp~~~~~~n~~~M~ea~~~v~~~~It~Avrd--~~~~~~~i~~gd~---igl~~~~i~~~~-- 245 (313)
T PF13684_consen 181 QGLAAL--------LVFDPEADLEENVEAMTEAAARVRTGEITYAVRD--TKINGGEIKKGDY---IGLVDGKIVVVG-- 245 (313)
T ss_pred HHHHHH--------HHhCccCChHHHHHHHHHHHhhCeeeeEEEeeec--ceecCcccccCCE---EEEeCCEEEEEc--
Confidence 333221 1123445888888888888888888777554221 1111233334433 555444433332
Q ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEeeee
Q 022582 161 QPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYTG 230 (295)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~-gi~v~r~~vG 230 (295)
.+..+.+..+++++++ ++.+++-++=|=..+.. .++.+.+.|+++| ++.+.-.+-|
T Consensus 246 ~~~~~~~~~ll~~l~~---------~~~elvTi~~G~~~~~~-----~a~~l~~~l~~~~p~~eve~~~Gg 302 (313)
T PF13684_consen 246 KDLEEALKKLLEKLLD---------EDGELVTIYYGEDVSEE-----EAEALAEFLEEKYPDVEVEVYDGG 302 (313)
T ss_pred CCHHHHHHHHHHHhhc---------cCCeEEEEEecCCCCHH-----HHHHHHHHHHHHhCCeEEEEEECC
Confidence 3467777888888754 36788888887443332 4555666667776 6666644433
No 36
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=45.36 E-value=33 Score=30.97 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=26.5
Q ss_pred eecCCccCC------C--CHHHHHHHHHhccC-CCceEEEeeccc
Q 022582 5 AICGDVFAS------P--PVDSILAGIHAVTG-PMGCLLIVTNYT 40 (295)
Q Consensus 5 av~G~VFaS------P--s~~qIl~ai~~v~~-~~GvL~iv~NYt 40 (295)
.++||+|-. | ...++.+.++.+.. +..|.+|.+|+-
T Consensus 35 ii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD 79 (231)
T TIGR01854 35 YILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRD 79 (231)
T ss_pred EEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 478999962 2 23567777777653 678999999996
No 37
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=44.25 E-value=44 Score=23.75 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.1
Q ss_pred EEeeccccccccHHHHHHHHHhcCCcEEEEEecc
Q 022582 34 LIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGD 67 (295)
Q Consensus 34 ~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~D 67 (295)
+.+-||+| |+..-|.+.+++.|+++...-..+
T Consensus 1 V~vPd~~g--~~~~~a~~~l~~~g~~~~~~~~~~ 32 (63)
T PF03793_consen 1 VTVPDLVG--MTYDEAKSILEAAGLTVNVVEEYS 32 (63)
T ss_dssp EEE-TTTT--SBHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CCCCCcCC--CcHHHHHHHHHHCCCEEEEEEEec
Confidence 35789999 999999999999999877777533
No 38
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=43.73 E-value=27 Score=36.74 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=28.3
Q ss_pred ceeecCCccCCC---CHHHHHHHHHhcc-CCCceEEEeecccc
Q 022582 3 TAAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNYTG 41 (295)
Q Consensus 3 dAav~G~VFaSP---s~~qIl~ai~~v~-~~~GvL~iv~NYtG 41 (295)
+.+..||||-|- ...|.-+|++.+. .|.|||+.. |..|
T Consensus 261 SeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYL-rqEG 302 (555)
T PRK09319 261 SECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYL-RQEG 302 (555)
T ss_pred ccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEe-CCCC
Confidence 457789999876 3478889999976 566998755 5553
No 39
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=43.65 E-value=54 Score=30.45 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=35.3
Q ss_pred eecCCccC--CC-CHHHHHHHHHhccCCCceEEEeecccccc--ccHHHHHHHHHhcCCc
Q 022582 5 AICGDVFA--SP-PVDSILAGIHAVTGPMGCLLIVTNYTGDR--LNFGLAAEQAKSEGYK 59 (295)
Q Consensus 5 av~G~VFa--SP-s~~qIl~ai~~v~~~~GvL~iv~NYtGD~--lNFgmA~E~A~~~Gi~ 59 (295)
.++||++. ++ ...++.+.++......+|.+|.+|+--.. -+...-.+..+..|+.
T Consensus 85 li~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~ 144 (271)
T PRK11340 85 LLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT 144 (271)
T ss_pred EEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcE
Confidence 46899987 33 34567677777776678999999995321 1122334556667764
No 40
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=43.12 E-value=21 Score=35.87 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=28.0
Q ss_pred ceeecCCccCCCC---HHHHHHHHHhccCCCceEEEeecccccc
Q 022582 3 TAAICGDVFASPP---VDSILAGIHAVTGPMGCLLIVTNYTGDR 43 (295)
Q Consensus 3 dAav~G~VFaSPs---~~qIl~ai~~v~~~~GvL~iv~NYtGD~ 43 (295)
+.+..||||-|-. -.|+-.|++.+....|||+.. |..|--
T Consensus 239 Sec~tgDvfgs~~CdCg~qL~~Al~~Ia~eGGvlvYL-rqegrg 281 (387)
T PRK09318 239 SECVTGDTLSSLRCDCGSQLANFLRMISKEGGILIYL-RQEGRG 281 (387)
T ss_pred ecccHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEE-CCCCcc
Confidence 3567899998743 378889999976433998654 656533
No 41
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.65 E-value=1.4e+02 Score=27.65 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=33.6
Q ss_pred eecCCccCCCC--HHH---HHHHHHhccC-C-CceEEEeecccc-ccccHHHHHHHHHhcCCcE
Q 022582 5 AICGDVFASPP--VDS---ILAGIHAVTG-P-MGCLLIVTNYTG-DRLNFGLAAEQAKSEGYKV 60 (295)
Q Consensus 5 av~G~VFaSPs--~~q---Il~ai~~v~~-~-~GvL~iv~NYtG-D~lNFgmA~E~A~~~Gi~v 60 (295)
.++||+|=... ... +.+.++.+.. + -.|++|.+|+-. +++++ ..+.++..|+.+
T Consensus 44 li~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~~~v~i 105 (253)
T TIGR00619 44 LVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSAQRLSA--AKKLLIELGVFV 105 (253)
T ss_pred EECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCChhhccc--chhHHHhCCeEE
Confidence 57899998754 322 2344544432 3 689999999964 45554 455666666554
No 42
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=41.18 E-value=74 Score=27.72 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=37.4
Q ss_pred eecCCccCCCCHH--HHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCC
Q 022582 5 AICGDVFASPPVD--SILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGY 58 (295)
Q Consensus 5 av~G~VFaSPs~~--qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi 58 (295)
.+.||+|...... .+.+.++......++.++.+|+-=..-+...-.+..+..|+
T Consensus 37 l~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~~~~~~~l~~~~v 92 (223)
T cd07385 37 VLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDEENWIEALESAGI 92 (223)
T ss_pred EEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCchHHHHHHHHHcCC
Confidence 4689999876655 56677777777789999999996544444332455556664
No 43
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.78 E-value=2.8e+02 Score=26.43 Aligned_cols=194 Identities=15% Similarity=0.148 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHhccCCC--ceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhH
Q 022582 14 PPVDSILAGIHAVTGPM--GCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILV 89 (295)
Q Consensus 14 Ps~~qIl~ai~~v~~~~--GvL~iv--~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gRRGlAGtvlv 89 (295)
|++..+.++.+...... .||+|- ..-+| .|.. +..|++..-+.++.+++=..++ .|.-+.
T Consensus 64 Ps~~~~~~~~~~l~~~g~~~vi~i~iSs~LSg---ty~~-a~~a~~~~~~~~v~viDS~~~s------------~~~g~~ 127 (282)
T COG1307 64 PSPGEFEELFEKLLQKGYDEVISIHISSGLSG---TYQS-AQLAAELVEGAKVHVIDSKSVS------------MGLGFL 127 (282)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEEEEcCCCccH---HHHH-HHHHHHhccCceEEEEcCcchh------------hHHHHH
Confidence 77888888888876542 566653 22333 2444 3444443333344444322221 234455
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccceee--ccccccCCC--------------CCCCCcCCCeeEEeccccCCC
Q 022582 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQ--------------VTSDRLGPGKMELGLGIHGEP 153 (295)
Q Consensus 90 ~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigva--ls~c~~Pg~--------------~~~f~L~~~emE~G~GIHGEp 153 (295)
-+-+..++++|.|++|+.+..+++.+++.+.=+. |+++.-=|+ +|-..+.+|++++
T Consensus 128 v~~a~~l~~~G~s~~ei~~~l~~~~~~t~~~~~v~~L~~L~kgGRIs~~~a~lg~lL~ikPIl~~~~G~~~~-------- 199 (282)
T COG1307 128 VLEAAELAKAGKSFEEILKKLEEIREKTKAYFVVDDLDNLVKGGRISKAAAFLGNLLKIKPILSFEDGELVL-------- 199 (282)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECchhHHHhCCCcchhHHHHHhhhcceEEEEEeCCEEEE--------
Confidence 5667789999999999999999999998765432 333332221 1223333444432
Q ss_pred CcccccCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCe--EEEeeee-
Q 022582 154 GAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLA--VERVYTG- 230 (295)
Q Consensus 154 G~~r~~~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~--v~r~~vG- 230 (295)
-.+..+.+..++.|.+.+.+. ..-..+-+ +++..+-+. | ......+.|.++ ++. +.-...|
T Consensus 200 ---~~K~R~~kka~~~l~~~~~~~----~~~~~~~~-~~~~~~~~~----e---~~~~l~~~l~~~-~~~~~~~~~~~~~ 263 (282)
T COG1307 200 ---LGKVRGQKKAIKKLIELLKKE----VKDGAGYR-VAVLHGDAP----E---AAEQLKEKLLNK-FIEKDISISELGP 263 (282)
T ss_pred ---EeecccHHHHHHHHHHHHHHH----hccCCceE-EEEEeCCch----h---HHHHHHHHHHhh-cCCCCceeeccCC
Confidence 355666777888888888764 22122333 444443221 2 344455555666 444 4444444
Q ss_pred ccccccCCCcceEEEec
Q 022582 231 SFMTSLDMAGFSISIMK 247 (295)
Q Consensus 231 ~~~TSldm~GfSiTLl~ 247 (295)
...|-.+-..++|.+..
T Consensus 264 vi~~H~G~ga~~i~~~~ 280 (282)
T COG1307 264 VIGTHTGPGALGIGVIP 280 (282)
T ss_pred EEEEEECCCeEEEEEEe
Confidence 44456666677766653
No 44
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=40.35 E-value=47 Score=27.51 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=35.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeec
Q 022582 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGS 231 (295)
Q Consensus 190 v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~ 231 (295)
..+=|..+|+.+.-.---+...+.+.|++++||...|+|+--
T Consensus 59 A~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~f 100 (113)
T PTZ00450 59 AYVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVFY 100 (113)
T ss_pred EEEEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 456688999998866667889999999999999999999853
No 45
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=39.46 E-value=86 Score=29.34 Aligned_cols=106 Identities=21% Similarity=0.167 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCC-cccccchhhHH
Q 022582 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAG-RRGLAGTILVN 90 (295)
Q Consensus 12 aSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~g-RRGlAGtvlv~ 90 (295)
..|.-.+|+++++.. +..=++++.+|++ +. .+....-|+++=.+=...|++-. .+..| |.-+.|.+=..
T Consensus 206 ~~p~~k~i~~~i~~~-g~~~~lH~cG~~~-~~------~~~l~~~~~d~~~~d~~~dl~~~--~~~~g~~~~i~G~id~~ 275 (330)
T cd03465 206 SLPYLKKVFDAIKAL-GGPVIHHNCGDTA-PI------LELMADLGADVFSIDVTVDLAEA--KKKVGDKACLMGNLDPI 275 (330)
T ss_pred hhHHHHHHHHHHHHc-CCceEEEECCCch-hH------HHHHHHhCCCeEeecccCCHHHH--HHHhCCceEEEeCcChH
Confidence 356677888888764 3445677777766 11 33344445554332222355422 22233 67788887555
Q ss_pred HHHhHHHHcCCCHHHHHHHHHHHHhhhcc--ceeecc-ccccCCC
Q 022582 91 KIAGAAAAAGLSLADVAAEAKRASEMVGT--MGVALS-VCTLPGQ 132 (295)
Q Consensus 91 KiaGAaAe~G~~L~ev~~~a~~~~~~~~T--igvals-~c~~Pg~ 132 (295)
..+ ...+-+||.+-++++.+.++. =|.-|+ .|.+|-+
T Consensus 276 ~~l-----~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~ 315 (330)
T cd03465 276 DVL-----LNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPD 315 (330)
T ss_pred Hhh-----cCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCC
Confidence 221 234669999999999988865 344453 4777753
No 46
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=38.84 E-value=71 Score=28.39 Aligned_cols=57 Identities=21% Similarity=0.463 Sum_probs=38.5
Q ss_pred CCCC-CCCCCeEEEEEcC--------------------CCCCh-----HHHHHHHHHHHHHhhhhhcCCeEEEe-eeecc
Q 022582 180 NYVP-ITRGNRVVLMING--------------------LGATP-----VMELMIAAGKAVPNLQLEHGLAVERV-YTGSF 232 (295)
Q Consensus 180 ~~l~-~~~gd~v~vlVNn--------------------LG~ts-----~lEl~i~~~~v~~~L~~~~gi~v~r~-~vG~~ 232 (295)
.|++ .+.||+=++++|| .||+. .-|..-+++.+...|.++ |+--++. .+|.|
T Consensus 76 ~flp~i~~GDkRii~~nG~~~~av~R~P~~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~-Gl~f~GiDvig~~ 154 (173)
T PF02955_consen 76 PFLPEIKEGDKRIILFNGEPSHAVRRIPAKGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRED-GLLFVGIDVIGDK 154 (173)
T ss_dssp E--GGGGG-EEEEEEETTEE-SEEEEE--SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHT-T--EEEEEEETTE
T ss_pred eccccccCCCEEEEEECCEEhHHeecCCCCCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhc-CcEEEEEeccccc
Confidence 3555 4689999999997 56653 346667888999999999 9877764 45888
Q ss_pred ccccC
Q 022582 233 MTSLD 237 (295)
Q Consensus 233 ~TSld 237 (295)
+|-.|
T Consensus 155 l~EiN 159 (173)
T PF02955_consen 155 LTEIN 159 (173)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 88554
No 47
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=38.03 E-value=40 Score=28.01 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=25.4
Q ss_pred ccCCCCHHHHHHHHHhccCCCceEEEeecccc
Q 022582 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTG 41 (295)
Q Consensus 10 VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtG 41 (295)
+...|+.++.++.......+.+.++|+.|||.
T Consensus 81 i~v~~d~~~a~~~~~~~~~~~~~~yil~tYTA 112 (113)
T PF08353_consen 81 IIVEEDLEEALDAFLIKSDPTDKVYILATYTA 112 (113)
T ss_pred eEecCCHHHHHHHHHHhcCCCCcEEEEECCcC
Confidence 55578888888886556777888999999994
No 48
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=37.39 E-value=64 Score=29.09 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhHHHHH
Q 022582 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (295)
Q Consensus 14 Ps~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gRRGlAGtvlv~Kia 93 (295)
.....++++++.-.-...|.++|.|-..- -+.+.|++.||++..+-.. +.+. |. -+=..+.
T Consensus 13 s~~~~ll~~~~~~~~~~~I~~vvs~~~~~-----~~~~~a~~~gIp~~~~~~~-~~~~--------~~-----~~~~~~~ 73 (200)
T PRK05647 13 SNLQAIIDACAAGQLPAEIVAVISDRPDA-----YGLERAEAAGIPTFVLDHK-DFPS--------RE-----AFDAALV 73 (200)
T ss_pred hhHHHHHHHHHcCCCCcEEEEEEecCccc-----hHHHHHHHcCCCEEEECcc-ccCc--------hh-----HhHHHHH
Confidence 66677777776544457889999887632 2688999999998654211 1110 00 0001122
Q ss_pred hHHHHcCCCHHHHHHHHHHH----HhhhccceeeccccccCC-CC--CCC-CcCCCeeEEecccc
Q 022582 94 GAAAAAGLSLADVAAEAKRA----SEMVGTMGVALSVCTLPG-QV--TSD-RLGPGKMELGLGIH 150 (295)
Q Consensus 94 GAaAe~G~~L~ev~~~a~~~----~~~~~Tigvals~c~~Pg-~~--~~f-~L~~~emE~G~GIH 150 (295)
-.+.+...++-=+....+.+ .+...--.+.+-+--+|. +. |.+ .|-.|+-|.|+-+|
T Consensus 74 ~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tG~Tvh 138 (200)
T PRK05647 74 EALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVH 138 (200)
T ss_pred HHHHHhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCccccCCCCccHHHHHHHcCCCeEEEEEE
Confidence 22333334433333333322 222222235555556676 32 222 36678888899888
No 49
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=35.63 E-value=1.5e+02 Score=28.65 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccccc
Q 022582 165 VVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (295)
Q Consensus 165 ~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSl 236 (295)
+.+.+.++.+..+ .+-+.++|.||.=||+..- =-.+++++. .|+++ + ++.++++.|+-|=
T Consensus 83 ~~~~~~l~~~~~~-------~~vk~vvL~inSPGG~v~a-s~~i~~~l~-~l~~~-~--PV~v~v~~~AASG 142 (317)
T COG0616 83 DDIEEILRAARAD-------PSVKAVVLRINSPGGSVVA-SELIARALK-RLRAK-K--PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHhcC-------CCCceEEEEEECcCCchhH-HHHHHHHHH-HHhhc-C--CEEEEECCeecch
Confidence 3446677777553 3457799999999998763 334555544 44566 5 8889988776653
No 50
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=35.49 E-value=4.3e+02 Score=27.61 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=77.1
Q ss_pred HHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEeccccc---CCCCCCCCCccc---ccch-------hh
Q 022582 22 GIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA---LPPPRGIAGRRG---LAGT-------IL 88 (295)
Q Consensus 22 ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva---~~~~~~~~gRRG---lAGt-------vl 88 (295)
+.+.+.++.|-.++.+||-||+|. .+++...-.-|+- -.+.++||-. .++..+.+-|.- ++|. -.
T Consensus 324 ~~~lvk~P~~FViv~~NlfGDIlS-Dl~A~l~GsLGl~-pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~ 401 (483)
T PLN03065 324 VAYAVKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLM-TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIAS 401 (483)
T ss_pred HHHHHhCCCCcEEEeeccchhhhh-HHHHHhcCchhhc-ccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHH
Confidence 356778888999999999999997 5777777777754 4456788753 344444443311 2332 23
Q ss_pred HHHHHhHHHHcCC--CHHHHHHHHHHHHhhhc-cceeeccccccCCCCCCCCcCCCeeEEeccccCCCCcccccCCCHHH
Q 022582 89 VNKIAGAAAAAGL--SLADVAAEAKRASEMVG-TMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDV 165 (295)
Q Consensus 89 v~KiaGAaAe~G~--~L~ev~~~a~~~~~~~~-Tigvals~c~~Pg~~~~f~L~~~emE~G~GIHGEpG~~r~~~~~a~~ 165 (295)
+.=.+..+...|. .-+++.+.|+++-+.+. |+.- |.-+-+ +|.=+||. ...+....+-+|
T Consensus 402 IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~---------G~~T~D-------Lg~~~~G~-~~~~~~~~~T~e 464 (483)
T PLN03065 402 IFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVES---------GKMTKD-------LAILIHGP-KVSREFYLNTEE 464 (483)
T ss_pred HHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHc---------CCcccc-------cccccCCC-cccCCCCcCHHH
Confidence 3334445555555 12355556665554432 2221 111112 34345662 223555677888
Q ss_pred HHHHHHHHHH
Q 022582 166 VVSHVLKQIL 175 (295)
Q Consensus 166 lv~~ml~~ll 175 (295)
+.+.+.++|-
T Consensus 465 f~daV~~~L~ 474 (483)
T PLN03065 465 FIDAVAQTLA 474 (483)
T ss_pred HHHHHHHHHH
Confidence 8888888873
No 51
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=35.10 E-value=50 Score=27.69 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=29.4
Q ss_pred CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEec
Q 022582 29 PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVG 66 (295)
Q Consensus 29 ~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~ 66 (295)
+.+||+|+..+-|.+-.--++.+.++..|+++.-++++
T Consensus 129 ~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 129 QLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 56688888877787666667788888888888888764
No 52
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=33.77 E-value=54 Score=26.92 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=23.8
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEE
Q 022582 192 LMINGLGATPVMELMIAAGKAVPNLQLEHGLAVER 226 (295)
Q Consensus 192 vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r 226 (295)
.||| .|+.|.-+..-+.+.+.+...++|||....
T Consensus 66 fivN-~g~Ata~dv~~Li~~v~~~V~~~~Gi~Le~ 99 (105)
T PF02873_consen 66 FIVN-HGGATAADVLALIEEVRERVKEKFGIELEP 99 (105)
T ss_dssp EEEE--SS--HHHHHHHHHHHHHHHHHHHS--B-B
T ss_pred eEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCeeee
Confidence 4555 577777899999999999999999987654
No 53
>PRK07198 hypothetical protein; Validated
Probab=33.18 E-value=68 Score=32.66 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=28.0
Q ss_pred ceeecCCccCCCCH---HH----HHHHHHhccC-CCceEEEeecccc
Q 022582 3 TAAICGDVFASPPV---DS----ILAGIHAVTG-PMGCLLIVTNYTG 41 (295)
Q Consensus 3 dAav~G~VFaSPs~---~q----Il~ai~~v~~-~~GvL~iv~NYtG 41 (295)
+.+..||||-|-.- .| |-+|++.+.. +.|||+.+.+ .|
T Consensus 246 SeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLrQ-EG 291 (418)
T PRK07198 246 DECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNRK-EG 291 (418)
T ss_pred ccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeCC-CC
Confidence 45778999999854 44 5567777765 8899998854 55
No 54
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.09 E-value=79 Score=28.31 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=32.5
Q ss_pred ccCC---CCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEE
Q 022582 10 VFAS---PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEI 62 (295)
Q Consensus 10 VFaS---Ps~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~ 62 (295)
||+| .+...++++++.=.-..++.+|+.|... .-+.++|++.||++..
T Consensus 5 il~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~-----~~~~~~A~~~gip~~~ 55 (190)
T TIGR00639 5 VLISGNGSNLQAIIDACKEGKIPASVVLVISNKPD-----AYGLERAAQAGIPTFV 55 (190)
T ss_pred EEEcCCChhHHHHHHHHHcCCCCceEEEEEECCcc-----chHHHHHHHcCCCEEE
Confidence 4555 4455566666553345689999999863 2457889999999765
No 55
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=32.49 E-value=32 Score=34.07 Aligned_cols=131 Identities=19% Similarity=0.217 Sum_probs=69.5
Q ss_pred HhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCC--CCCCCCcc------cc------cchhhH
Q 022582 24 HAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPP--PRGIAGRR------GL------AGTILV 89 (295)
Q Consensus 24 ~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~--~~~~~gRR------Gl------AGtvlv 89 (295)
+++.+..|-++-.|||.|||..==+| +---.-|+=...++.-|--.+.. ..+.+-|. |- -..||.
T Consensus 267 qa~KS~GGfvwAcKNYDGDVqSD~vA-Qg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~hqkG~eTSTN~IASIFA 345 (422)
T KOG1526|consen 267 QAMKSEGGFVWACKNYDGDVQSDIVA-QGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNSIASIFA 345 (422)
T ss_pred HHHhcCCceEEEeecCCCchhhhHHH-hcccchhhheeEEEcCCCCeeeeeccccchhHHHHHHhcCCCccCcchHHHHH
Confidence 44568899999999999999764333 22234466566666555443332 11122211 10 012222
Q ss_pred HHHHhHHHHcCC--CHHHHHHHHHHHHhhh-ccceeeccccccCCCCCCCCcCCCeeEEeccccCCCCcccccCCCHHHH
Q 022582 90 NKIAGAAAAAGL--SLADVAAEAKRASEMV-GTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVV 166 (295)
Q Consensus 90 ~KiaGAaAe~G~--~L~ev~~~a~~~~~~~-~Tigvals~c~~Pg~~~~f~L~~~emE~G~GIHGEpG~~r~~~~~a~~l 166 (295)
| --.++.+|. +-+++..+++.+-..+ .|+-. |.-+-+ +-+-||| .+.|..+.+-.|.
T Consensus 346 W--tRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~---------G~MTKD-------Lal~i~g--~~~r~~y~~T~eF 405 (422)
T KOG1526|consen 346 W--TRGLAHRAKLDNNEALAKFANALEKACIETVES---------GKMTKD-------LALCIHG--KVERSDYLNTEEF 405 (422)
T ss_pred H--HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHh---------ccchHh-------HHHHhcC--CccccccccHHHH
Confidence 2 123344443 3455666665554322 11110 111222 3467899 8889999988888
Q ss_pred HHHHHHHHH
Q 022582 167 VSHVLKQIL 175 (295)
Q Consensus 167 v~~ml~~ll 175 (295)
++.+-..|-
T Consensus 406 idav~~~L~ 414 (422)
T KOG1526|consen 406 IDAVASNLK 414 (422)
T ss_pred HHHHHHHHH
Confidence 777766663
No 56
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=32.40 E-value=73 Score=31.73 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=35.9
Q ss_pred HHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHH-----HHHhhhhh
Q 022582 168 SHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGK-----AVPNLQLE 219 (295)
Q Consensus 168 ~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~-----v~~~L~~~ 219 (295)
..|+++|+.. +.|.|++|+.|.+|-.+.+|...+... .-+|++-.
T Consensus 71 tTLLn~Il~~-------~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~ 120 (391)
T KOG2743|consen 71 TTLLNYILTG-------QHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELR 120 (391)
T ss_pred HHHHHHHHcc-------CCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhc
Confidence 4688888764 578999999999999999999988776 45555544
No 57
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=32.10 E-value=1e+02 Score=25.93 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCCcc
Q 022582 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAGF 241 (295)
Q Consensus 164 ~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~Gf 241 (295)
.+-+..++..|.+ .+...+.-++.|.+||-|-....+-..-...-...|.++ |+++ .-+|+=|++.+|..-
T Consensus 13 ~~k~~~~l~Nl~N----ll~~~p~~~IeVV~~g~ai~~l~~~~~~~~~~~~~L~~~-GV~~--~aC~nSl~a~~i~~d 83 (112)
T COG1416 13 ESKVNMVLGNLTN----LLEDDPSVEIEVVAHGPAIAFLSEKANIAAVRVAELAQQ-GVEF--VACGNSLRAHDIDED 83 (112)
T ss_pred HHHHHHHHHHHHH----HhcCCCCceEEEEEeCchhHHhhhhccchhHHHHHHHHC-CCEE--EEecchHHHcCCCHH
Confidence 4555667776655 255567889999999999888888777766556667777 7765 467888888887744
No 58
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=31.56 E-value=1.1e+02 Score=25.12 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=27.6
Q ss_pred HHHHHhccC-CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEec
Q 022582 20 LAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVG 66 (295)
Q Consensus 20 l~ai~~v~~-~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~ 66 (295)
+++++.+.. .-.+++|+ |||. .|-=+++++++.|.+|..+-..
T Consensus 89 ~d~~~~~~~~~~d~ivLv---SgD~-Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 89 IDALELAYKRRIDTIVLV---SGDS-DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHHhhhcCCCEEEEE---ECCc-cHHHHHHHHHHcCCEEEEEccC
Confidence 445544443 33566666 5566 7888888888888877765543
No 59
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=31.50 E-value=1e+02 Score=30.18 Aligned_cols=85 Identities=28% Similarity=0.411 Sum_probs=58.5
Q ss_pred eeeccccccCCCCCCCCcCCCeeEEeccccCCCCcccccCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCC
Q 022582 121 GVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGAT 200 (295)
Q Consensus 121 gvals~c~~Pg~~~~f~L~~~emE~G~GIHGEpG~~r~~~~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~t 200 (295)
-+++..|+.|+-.+ ...+..+-||-.+-.|+ .++.+|+..++++ .| =-+....|||+|
T Consensus 15 ~~~l~~~s~~~~~~--~~~~~~I~VgsK~~tE~-----------~IL~~m~~~lle~--------~~-~kv~~~~~lG~t 72 (300)
T COG1732 15 LLLLAACSLPGLGS--ASAAKTIVVGSKIFTEQ-----------YILGNILKQLLEK--------NG-IKVEDKTGLGGT 72 (300)
T ss_pred HHHHHHhccccccc--cccCCCEEEecCCCcHH-----------HHHHHHHHHHHHh--------cC-CceeeccCCCch
Confidence 45677888887212 44567777776555554 6788999999875 12 236678899999
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccC
Q 022582 201 PVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLD 237 (295)
Q Consensus 201 s~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSld 237 (295)
+.. ++.|..- .|++.--|.|+-.+++.
T Consensus 73 ~v~---------~~Al~~G-~IDiYpEYTGt~~~~~l 99 (300)
T COG1732 73 AVV---------RNALKSG-DIDIYPEYTGTALFSFL 99 (300)
T ss_pred HHH---------HHHHHcC-CCCeEeeecchhhhhhc
Confidence 753 3344566 79999999998776543
No 60
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=31.47 E-value=1.1e+02 Score=29.43 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCC
Q 022582 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALP 72 (295)
Q Consensus 14 Ps~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~ 72 (295)
++++++.++++....++--++++.||+|......--++.|++.|+ ++|-|.+-..
T Consensus 105 ~d~~~l~~~i~~~~~~~t~~v~~~~~~G~~~~~~~i~~l~~~~~~----~lI~D~a~a~ 159 (380)
T TIGR03588 105 IDEDALEKKLAAAKGKLPKAIVPVDFAGKSVDMQAIAALAKKHGL----KIIEDASHAL 159 (380)
T ss_pred cCHHHHHHHhhcccCCCceEEEEeCCCCccCCHHHHHHHHHHcCC----EEEEECCCcc
Confidence 567777777764422334466678999999988888888888764 4666666543
No 61
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=30.78 E-value=1.5e+02 Score=23.59 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=43.8
Q ss_pred HHHHHHHHHH-HHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCC-Cc
Q 022582 163 VDVVVSHVLK-QILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM-AG 240 (295)
Q Consensus 163 a~~lv~~ml~-~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm-~G 240 (295)
+.+.+++.++ .|++ ..++.-+++.|-|.+=--.+..|..-+.+.+.+++.+. .+++.|..+-. +| .-
T Consensus 16 ~~~Av~~Al~spLl~-----~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~-----a~ii~G~~id~-~l~d~ 84 (95)
T PF12327_consen 16 AEEAVEQALNSPLLD-----VDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPD-----ANIIWGASIDE-ELEDE 84 (95)
T ss_dssp HHHHHHHHHTSTTST-----S-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTT-----SEEEEEEEE-T-TGTTE
T ss_pred HHHHHHHHHhCcccc-----CChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcC-----ceEEEEEEECC-CCCCe
Confidence 4566666664 4554 34555566666665433577889999999999888755 44567766542 33 33
Q ss_pred ceEEEe
Q 022582 241 FSISIM 246 (295)
Q Consensus 241 fSiTLl 246 (295)
++||++
T Consensus 85 i~VtiI 90 (95)
T PF12327_consen 85 IRVTII 90 (95)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 677775
No 62
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=30.62 E-value=30 Score=30.10 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=34.5
Q ss_pred CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecc
Q 022582 29 PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGD 67 (295)
Q Consensus 29 ~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~D 67 (295)
+.-|++|+..+-|..-+.-++.|.++.+|+++.-|+++.
T Consensus 129 ~a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 129 GAPVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp T-EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 567999999999998889999999999999999999998
No 63
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=30.58 E-value=75 Score=31.85 Aligned_cols=119 Identities=22% Similarity=0.338 Sum_probs=70.4
Q ss_pred HHHHHh-------HHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCCCCCCCCcCCCeeEEeccccCCCCcccccCC
Q 022582 89 VNKIAG-------AAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQ 161 (295)
Q Consensus 89 v~KiaG-------AaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L~~~emE~G~GIHGEpG~~r~~~~ 161 (295)
|+||.| .+.++|++-+|+.+- .-.++|| ...+|++++|||-+=||.-|- |
T Consensus 10 v~kiFG~~~~~a~~~~~~G~~k~ei~~~------tg~vvGv---------~~~sl~v~~GeIfViMGLSGS-G------- 66 (386)
T COG4175 10 VYKIFGKNPKRALKLLDQGKSKAEILKK------TGLVVGV---------NDASLDVEEGEIFVIMGLSGS-G------- 66 (386)
T ss_pred ceeecccCHHHHHHHHHcCCcHHHHHHh------hCcEEee---------ccceeeecCCeEEEEEecCCC-C-------
Confidence 456666 356789998888643 2234444 456899999999999998863 2
Q ss_pred CHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcC--CCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 022582 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMING--LGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (295)
Q Consensus 162 ~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNn--LG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~ 239 (295)
+...-+++++|.+. ..|. ++|+| .-..+.-||--+-++-....-++|+.=++ .|-|+=.
T Consensus 67 --KSTLvR~~NrLiep-------t~G~---ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh-------rtVl~Nv 127 (386)
T COG4175 67 --KSTLVRLLNRLIEP-------TRGE---ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH-------RTVLENV 127 (386)
T ss_pred --HHHHHHHHhccCCC-------CCce---EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc-------hhHhhhh
Confidence 34445667777553 3332 34443 33444445544444444443344454444 4566666
Q ss_pred cceEEEeccc
Q 022582 240 GFSISIMKAD 249 (295)
Q Consensus 240 GfSiTLl~ld 249 (295)
+|.+.+--++
T Consensus 128 ~fGLev~Gv~ 137 (386)
T COG4175 128 AFGLEVQGVP 137 (386)
T ss_pred hcceeecCCC
Confidence 6666666666
No 64
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=30.52 E-value=1.8e+02 Score=27.44 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=38.6
Q ss_pred ccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHH-HHHHHhcCCcEEEEEecccccC
Q 022582 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLA-AEQAKSEGYKVEIVIVGDDCAL 71 (295)
Q Consensus 10 VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA-~E~A~~~Gi~v~~viV~DDva~ 71 (295)
+|++.....+..++..+....|..+++.| -.|+.. ...|+..|.++..|-+.+|-..
T Consensus 58 ~~t~~~t~al~~~~~~l~~~~~~vlv~~~-----~~~~~~~~~~a~~~g~~~~~v~~~~~~~~ 115 (363)
T TIGR02326 58 LLQGSGTFAVEAVIGSAVPKDGKLLVVIN-----GAYGARIVQIAEYLGIPHHVVDTGEVEPP 115 (363)
T ss_pred EEcCCCHHHHHHHHHhcCCCCCeEEEEeC-----ChhhHHHHHHHHHcCCceEEEeCCCCCCC
Confidence 47888888888888777655565444433 144443 4567788999999888765544
No 65
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=30.40 E-value=1.4e+02 Score=28.30 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHhccCC--CceEEE---eeccccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 022582 13 SPPVDSILAGIHAVTGP--MGCLLI---VTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (295)
Q Consensus 13 SPs~~qIl~ai~~v~~~--~GvL~i---v~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva 70 (295)
.++++++-++++..... +-.+++ +.|.||++....--++.|++.| .+++-||+-
T Consensus 151 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~----~~li~De~~ 209 (393)
T TIGR01822 151 NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYD----ALVMVDECH 209 (393)
T ss_pred CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcC----CEEEEECCc
Confidence 46778887788764322 444555 3489999999888888888876 467788884
No 66
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=30.17 E-value=46 Score=25.75 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=21.5
Q ss_pred ceEEEeeccccccccHHHHHHHHHhcCCc
Q 022582 31 GCLLIVTNYTGDRLNFGLAAEQAKSEGYK 59 (295)
Q Consensus 31 GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~ 59 (295)
-=+++|+.|--|+ |.|+|++-||+
T Consensus 47 ~r~ivVtp~id~~-----a~~~A~~LGIe 70 (70)
T PF07788_consen 47 DRLIVVTPYIDDR-----AKEMAEELGIE 70 (70)
T ss_pred ceEEEEEeecCHH-----HHHHHHHhCCC
Confidence 5689999999999 99999999985
No 67
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=29.50 E-value=42 Score=27.25 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=33.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeee
Q 022582 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (295)
Q Consensus 190 v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG 230 (295)
..+=|..+|..+.-+--.+..++.+.|++++||...|.|+=
T Consensus 57 a~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~ 97 (114)
T PF01187_consen 57 AFVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYIN 97 (114)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEE
T ss_pred EEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 45567899999887777999999999999999999999874
No 68
>PRK04946 hypothetical protein; Provisional
Probab=29.28 E-value=1.4e+02 Score=26.84 Aligned_cols=71 Identities=10% Similarity=-0.027 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccccc---C
Q 022582 161 QPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL---D 237 (295)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSl---d 237 (295)
.+.+|--+.+.+.|-+ ....|-+.+.+|-|-|. .++=+.|..||.+. .+|-.|.+.. +
T Consensus 103 ~~~eeA~~~L~~fl~~------a~~~g~r~v~IIHGkG~------gvLk~~V~~wL~q~-------~~V~af~~A~~~~G 163 (181)
T PRK04946 103 LTQLQAKQELGALIAA------CRKEHVFCACVMHGHGK------HILKQQTPLWLAQH-------PDVMAFHQAPKEWG 163 (181)
T ss_pred CCHHHHHHHHHHHHHH------HHHcCCCEEEEEcCCCH------hHHHHHHHHHHcCC-------chhheeeccCcccC
Confidence 3555555555555433 12457889999999994 79999999999875 4677888865 6
Q ss_pred CCcceEEEecccH
Q 022582 238 MAGFSISIMKADE 250 (295)
Q Consensus 238 m~GfSiTLl~ldd 250 (295)
..|..+-+|+.++
T Consensus 164 G~GA~~VlLk~~~ 176 (181)
T PRK04946 164 GDAALLVLIEIEE 176 (181)
T ss_pred CceEEEEEEecCC
Confidence 6788888887654
No 69
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=29.16 E-value=54 Score=27.73 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHhccCCCceEEEeeccc
Q 022582 13 SPPVDSILAGIHAVTGPMGCLLIVTNYT 40 (295)
Q Consensus 13 SPs~~qIl~ai~~v~~~~GvL~iv~NYt 40 (295)
+|||+|+..-+-..-+-+|-|++ ||.
T Consensus 85 APsPDq~v~~Ly~cf~~d~~Lvl--~Yc 110 (116)
T KOG3439|consen 85 APSPDQIVGNLYECFGTDGKLVL--NYC 110 (116)
T ss_pred CCCchhHHHHHHHhcCCCCEEEE--EEe
Confidence 69999999999998888887666 774
No 70
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.58 E-value=39 Score=31.91 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=46.3
Q ss_pred HHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHh----------cCCcEEE--EEecccccCCC
Q 022582 16 VDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKS----------EGYKVEI--VIVGDDCALPP 73 (295)
Q Consensus 16 ~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~----------~Gi~v~~--viV~DDva~~~ 73 (295)
++-|.+|++.+...++..+|+..=.|-.+|=..|.|+|+. |||+=+. ..|++.+++++
T Consensus 64 ~epi~~Al~~~~~~~~~~vi~lsP~G~~f~Q~~a~eLa~~~~lv~iCGrYEGiDeRvi~~~vdeEiSIGD 133 (240)
T COG0336 64 PEPLFDALDSVKAAKKAKVILLSPQGKPFTQARARELAKEEHLVLICGRYEGIDERVIELYVDEEISIGD 133 (240)
T ss_pred cHHHHHHHHHHHhccCCeEEEECCCCCccCHHHHHHHhcCCCEEEEeccccchhHHHHhhccceEEeecc
Confidence 5668889999988778888888999999999999999987 4554333 36778888764
No 71
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=28.57 E-value=87 Score=30.11 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=62.6
Q ss_pred cCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCCcccccchhhH
Q 022582 11 FASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAGRRGLAGTILV 89 (295)
Q Consensus 11 FaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~-~~gRRGlAGtvlv 89 (295)
|..|...+|+++++....+.-+|++.+|.+.. .|..+.-|++ .+-++.-+....... ..+++-+.|.+=-
T Consensus 221 f~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~-------~~~~~~~~~~--~is~d~~~dl~~~k~~~g~~~~i~Gni~p 291 (346)
T PRK00115 221 FVLPYMKRIVAELKREHPDVPVILFGKGAGEL-------LEAMAETGAD--VVGLDWTVDLAEARRRVGDKKALQGNLDP 291 (346)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHH-------HHHHHhcCCC--EEeeCCCCCHHHHHHHcCCCeEEEeCCCh
Confidence 44788899999998742234588888876532 3333344553 444444333322222 2446899998843
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeec-cccccCCC
Q 022582 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVAL-SVCTLPGQ 132 (295)
Q Consensus 90 ~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval-s~c~~Pg~ 132 (295)
. .- .| +-++|.+-+++..+....=|.-| +.|.+|-+
T Consensus 292 ~-----ll-~g-t~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~ 328 (346)
T PRK00115 292 A-----VL-LA-PPEAIEEEVRAILDGGGGPGHIFNLGHGILPE 328 (346)
T ss_pred h-----Hh-cC-CHHHHHHHHHHHHHHhCCCCeeeecCCcCCCC
Confidence 2 11 23 57999999999998874333333 34766643
No 72
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=28.38 E-value=53 Score=32.04 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=33.3
Q ss_pred HHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccc
Q 022582 169 HVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTS 235 (295)
Q Consensus 169 ~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TS 235 (295)
.++.+|+++ ..|.|++|+||-+|-.+.-. ...+... +.++...--|-.|-.
T Consensus 16 TlL~~lL~~-------~~g~kiAVIVNEfGEvgID~--------~~~l~~~-~e~~~El~nGCICCT 66 (323)
T COG0523 16 TLLNHLLAN-------RDGKKIAVIVNEFGEVGIDG--------GALLSDT-GEEVVELTNGCICCT 66 (323)
T ss_pred HHHHHHHhc-------cCCCcEEEEEecCccccccC--------CCccccC-CccEEEeCCceEEEe
Confidence 577788765 34899999999999777664 1233444 555555555555544
No 73
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=28.11 E-value=80 Score=26.43 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=18.4
Q ss_pred eecCCccCCCCHHHHHHHHHhccCCCceEEEeecc
Q 022582 5 AICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNY 39 (295)
Q Consensus 5 av~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NY 39 (295)
.++||+|-.....+.....+.......+.+|-+|+
T Consensus 31 i~~GDi~~~~~~~~~~~~~~~~~~~~~v~~v~GNH 65 (166)
T cd07404 31 VLAGDIGYLTDAPRFAPLLLALKGFEPVIYVPGNH 65 (166)
T ss_pred EECCCCCCCcchHHHHHHHHhhcCCccEEEeCCCc
Confidence 35666665544444333233334455666666666
No 74
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=27.18 E-value=2.3e+02 Score=26.98 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=66.4
Q ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHhh-------h------ccceeeccccccCC-CCCCCCcCCC-ee--EEeccccC
Q 022582 89 VNKIAGAAAAAGLSLADVAAEAKRASEM-------V------GTMGVALSVCTLPG-QVTSDRLGPG-KM--ELGLGIHG 151 (295)
Q Consensus 89 v~KiaGAaAe~G~~L~ev~~~a~~~~~~-------~------~Tigvals~c~~Pg-~~~~f~L~~~-em--E~G~GIHG 151 (295)
+.|.+....+-|.++.||-+++++.... . .++.+++-.|..=| -...-.|.+| -+ -+|.-++|
T Consensus 24 ~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~d~~vlk~GDiv~IDvg~~~dG 103 (255)
T COG0024 24 ALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDG 103 (255)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCCCCcccCCCCEEEEEEEEEECC
Confidence 3445555677999999999999998873 3 34445554443322 1134567765 33 44544444
Q ss_pred CCCc--ccccCCC-----HHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeE
Q 022582 152 EPGA--AVADLQP-----VDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAV 224 (295)
Q Consensus 152 EpG~--~r~~~~~-----a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v 224 (295)
=-|= ....+.. ++.|++---+.|-. ..-..++|.+ +.-+-+.+.++.+.+ |+.|
T Consensus 104 ~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~---~I~~vkpG~~---------------l~~Ig~aIq~~~~~~-G~~v 164 (255)
T COG0024 104 YIGDTAITFVVGEVSDEDAKRLLEATKEALYA---GIEAVKPGAR---------------LGDIGRAIQEYAESR-GFSV 164 (255)
T ss_pred eeeeEEEEEECCCCChHHHHHHHHHHHHHHHH---HHHhccCCCC---------------HHHHHHHHHHHHHHc-CCEE
Confidence 3331 1223331 22233322222211 0112345543 345556666666666 9999
Q ss_pred EEeeeec
Q 022582 225 ERVYTGS 231 (295)
Q Consensus 225 ~r~~vG~ 231 (295)
+|.|+|+
T Consensus 165 Vr~~~GH 171 (255)
T COG0024 165 VRNLTGH 171 (255)
T ss_pred eecccCC
Confidence 9999994
No 75
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=25.82 E-value=1.1e+02 Score=26.33 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=37.0
Q ss_pred HHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecc
Q 022582 17 DSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGD 67 (295)
Q Consensus 17 ~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~D 67 (295)
+...++|+... +.|-.++++-=-|=.+-|+||.++.++ |.+|..|++-|
T Consensus 53 ~~y~~~I~~~~-~~gp~~L~G~S~Gg~lA~E~A~~Le~~-G~~v~~l~liD 101 (229)
T PF00975_consen 53 SRYAEAIRARQ-PEGPYVLAGWSFGGILAFEMARQLEEA-GEEVSRLILID 101 (229)
T ss_dssp HHHHHHHHHHT-SSSSEEEEEETHHHHHHHHHHHHHHHT-T-SESEEEEES
T ss_pred HHHHHHhhhhC-CCCCeeehccCccHHHHHHHHHHHHHh-hhccCceEEec
Confidence 44555665544 446888898888999999999877555 99999999888
No 76
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=25.54 E-value=18 Score=34.26 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=36.2
Q ss_pred hhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC
Q 022582 87 ILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG 131 (295)
Q Consensus 87 vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg 131 (295)
|++.-+||.----|.+++|++.+--++.+..| |||.|+.||.-+
T Consensus 142 ivlEnMAGqGn~vG~tfeelk~ii~~Ikdk~R-igVClDTCH~Fa 185 (281)
T KOG3997|consen 142 IVLENMAGQGNSVGGTFEELKFIIGKIKDKSR-IGVCLDTCHTFA 185 (281)
T ss_pred EEeecccCCCCcccccHHHHHHHHHhhcchhh-heeeHhhhhhhc
Confidence 34455677777788999999999999887766 899999999886
No 77
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.42 E-value=2.1e+02 Score=22.37 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=38.1
Q ss_pred ccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 022582 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (295)
Q Consensus 10 VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva 70 (295)
++..+.......-.+.+ +.+.++|+-.++|.-...--++++|++.|+ +.|.++++-.
T Consensus 42 ~~~~~~~~~~~~~~~~~--~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~--~iv~iT~~~~ 98 (139)
T cd05013 42 VVLLSDPHLQLMSAANL--TPGDVVIAISFSGETKETVEAAEIAKERGA--KVIAITDSAN 98 (139)
T ss_pred eEEecCHHHHHHHHHcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHcCC--eEEEEcCCCC
Confidence 34445555555544444 345677777999998887778899999885 4567776543
No 78
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=24.40 E-value=1.2e+02 Score=22.21 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=29.3
Q ss_pred hhhHHHHHhHHHHcCCCHHH-----HHHHHHHHHhhh
Q 022582 86 TILVNKIAGAAAAAGLSLAD-----VAAEAKRASEMV 117 (295)
Q Consensus 86 tvlv~KiaGAaAe~G~~L~e-----v~~~a~~~~~~~ 117 (295)
...+.+.+|.++..|.+-++ |..+++.+|++.
T Consensus 13 N~~lf~~a~~~~~~~v~~~~~~~~~v~~~~~~~N~~~ 49 (71)
T PF08708_consen 13 NCTLFRLARRLAYRGVDQEEQFRQEVLSLAQAINSNF 49 (71)
T ss_pred HHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHc
Confidence 57899999999999999999 999999999764
No 79
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=24.34 E-value=2.6e+02 Score=28.22 Aligned_cols=99 Identities=21% Similarity=0.295 Sum_probs=70.5
Q ss_pred cCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccch
Q 022582 7 CGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGT 86 (295)
Q Consensus 7 ~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~~~~~~~~gRRGlAGt 86 (295)
.|+-|.=|.-.++.+|++.. +||=+|-..=.|=.||-.++.|.+++ |++ .+=++=| |.++
T Consensus 168 qGEP~lYP~l~~lVqalk~~---~~v~vVSmQTng~~L~~~lv~eLeeA-GLd--RiNlSv~-aLDp------------- 227 (414)
T COG2100 168 QGEPLLYPHLVDLVQALKEH---KGVEVVSMQTNGVLLSKKLVDELEEA-GLD--RINLSVD-ALDP------------- 227 (414)
T ss_pred CCCCccchhHHHHHHHHhcC---CCceEEEEeeCceeccHHHHHHHHHh-CCc--eEEeecc-cCCH-------------
Confidence 47888889988888888776 67777777777889999998888765 432 1111111 1111
Q ss_pred hhHHHHHhHHH-HcCCCHHHHHHHHHHHHhhhccceeeccccccCC
Q 022582 87 ILVNKIAGAAA-AAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG 131 (295)
Q Consensus 87 vlv~KiaGAaA-e~G~~L~ev~~~a~~~~~~~~Tigvals~c~~Pg 131 (295)
|.|=.++ .+-++++.|.++|+.+.+ ..|-|-++|.-+||
T Consensus 228 ----k~Ak~L~G~~dYdv~kvle~aE~i~~--a~idvlIaPv~lPG 267 (414)
T COG2100 228 ----KLAKMLAGRKDYDVKKVLEVAEYIAN--AGIDVLIAPVWLPG 267 (414)
T ss_pred ----HHHHHhcCccccCHHHHHHHHHHHHh--CCCCEEEeeeecCC
Confidence 1111111 245899999999999998 89999999999999
No 80
>PHA02097 hypothetical protein
Probab=23.95 E-value=35 Score=25.21 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.0
Q ss_pred hccCCCceEEEeeccccccccHHH
Q 022582 25 AVTGPMGCLLIVTNYTGDRLNFGL 48 (295)
Q Consensus 25 ~v~~~~GvL~iv~NYtGD~lNFgm 48 (295)
+.+.+.|||.=| |||=|+-||.|
T Consensus 15 amntp~gv~iri-~~tf~~~~f~~ 37 (59)
T PHA02097 15 AMNTPGGVIIRI-AHTFDVSNFKI 37 (59)
T ss_pred EeeCCCcEEEEE-EeEEeeccceE
Confidence 346788998877 99999999976
No 81
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=23.09 E-value=57 Score=27.45 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=18.6
Q ss_pred ccccccHHHHHHHHHhcCCcEE
Q 022582 40 TGDRLNFGLAAEQAKSEGYKVE 61 (295)
Q Consensus 40 tGD~lNFgmA~E~A~~~Gi~v~ 61 (295)
.++++.|.+-.+.+++.|+++.
T Consensus 115 ~~~rl~f~INl~~~~~~gl~is 136 (145)
T PF13689_consen 115 EGNRLRFEINLAAARRAGLRIS 136 (145)
T ss_pred ECCEEEEEECHHHHHHcCCEEC
Confidence 5899999999999999888764
No 82
>PF11195 DUF2829: Protein of unknown function (DUF2829) ; InterPro: IPR021361 This entry is represented by Bacteriophage 16-3, p046. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.04 E-value=78 Score=24.31 Aligned_cols=16 Identities=56% Similarity=0.738 Sum_probs=11.9
Q ss_pred ccHHHHHHHHHhcCCcE
Q 022582 44 LNFGLAAEQAKSEGYKV 60 (295)
Q Consensus 44 lNFgmA~E~A~~~Gi~v 60 (295)
||||-|.+ |-.+|.+|
T Consensus 1 M~F~eAl~-alK~Gkkv 16 (75)
T PF11195_consen 1 MNFGEALE-ALKQGKKV 16 (75)
T ss_pred CCHHHHHH-HHHcCCCE
Confidence 89999999 55666544
No 83
>smart00740 PASTA PASTA domain.
Probab=22.87 E-value=1.7e+02 Score=19.86 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=25.6
Q ss_pred EEeeccccccccHHHHHHHHHhcCCcEEEEEeccc
Q 022582 34 LIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDD 68 (295)
Q Consensus 34 ~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DD 68 (295)
+.+.||.| +++.-|.+.++..|+++..+...||
T Consensus 5 ~~vp~~~g--~~~~~a~~~l~~~g~~~~~~~~~~~ 37 (66)
T smart00740 5 VEVPDVIG--LSKEEAKKLLKALGLKVEVVEESSE 37 (66)
T ss_pred eeCCCcCC--CCHHHHHHHHHHCCCEEEEEeccCC
Confidence 45789988 7788999999999998877654444
No 84
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=22.84 E-value=2e+02 Score=26.64 Aligned_cols=67 Identities=25% Similarity=0.360 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHH-HhccCCCceEEEeeccccccccHHHHHH---HHHhcCCcEEEEEecccccCCCCCCCCCcccccchh
Q 022582 12 ASPPVDSILAGI-HAVTGPMGCLLIVTNYTGDRLNFGLAAE---QAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (295)
Q Consensus 12 aSPs~~qIl~ai-~~v~~~~GvL~iv~NYtGD~lNFgmA~E---~A~~~Gi~v~~viV~DDva~~~~~~~~gRRGlAGtv 87 (295)
..+..+++.+.+ +.+..++=|.+++ +||-+=|+.+.. +++..|++|++|- |
T Consensus 74 ~~~~~~~~~~~i~~~~~~g~~Vvvl~---~GDP~~ys~~~~l~~~l~~~~~~veiiP-----------------G----- 128 (263)
T PLN02625 74 HSRTQEEIHELLLSFAEAGKTVVRLK---GGDPLVFGRGGEEMDALRKNGIPVTVVP-----------------G----- 128 (263)
T ss_pred cccCHHHHHHHHHHHHHCCCeEEEEc---CCCchhhhhHHHHHHHHHHCCCCEEEEC-----------------C-----
Confidence 334556666666 4445555455553 899999998875 4445677776541 1
Q ss_pred hHHHHHhHHHHcCCCHH
Q 022582 88 LVNKIAGAAAAAGLSLA 104 (295)
Q Consensus 88 lv~KiaGAaAe~G~~L~ 104 (295)
+--+..|+|..|.+|.
T Consensus 129 -ISS~~aaaA~lg~pl~ 144 (263)
T PLN02625 129 -ITAAIGAPAELGIPLT 144 (263)
T ss_pred -ccHHHHHHHHcCCCcc
Confidence 2245678888888875
No 85
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=22.48 E-value=1e+02 Score=24.87 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=18.4
Q ss_pred eecCCccCCCCHHHHHHHHHhccCCCceEEEeeccc
Q 022582 5 AICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYT 40 (295)
Q Consensus 5 av~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYt 40 (295)
.++||+|. +.++++.++.. .+++|.+|+-
T Consensus 30 i~~GDi~~---~~~~~~~~~~~----~~~~v~GNHD 58 (156)
T PF12850_consen 30 IILGDIFD---PEEVLELLRDI----PVYVVRGNHD 58 (156)
T ss_dssp EEES-SCS---HHHHHHHHHHH----EEEEE--CCH
T ss_pred EECCCchh---HHHHHHHHhcC----CEEEEeCCcc
Confidence 46788776 47777777666 5888888884
No 86
>PRK06703 flavodoxin; Provisional
Probab=22.41 E-value=4.5e+02 Score=21.72 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhccceeeccccccCCCCCCCCc-CCCeeEEeccccCCCCcccccCCCHHHHHHHHHHHHHcccCCCCCCC
Q 022582 107 AAEAKRASEMVGTMGVALSVCTLPGQVTSDRL-GPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPIT 185 (295)
Q Consensus 107 ~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L-~~~emE~G~GIHGEpG~~r~~~~~a~~lv~~ml~~ll~~~~~~l~~~ 185 (295)
.++|+++.+.+..-|+...-+.+..-. ..++ ..+-+=||.-.||.- .++ .-+...++.|.. +.++
T Consensus 16 ~~iA~~ia~~l~~~g~~v~~~~~~~~~-~~~l~~~d~viigspt~~~g-----~~p---~~~~~f~~~l~~-----~~l~ 81 (151)
T PRK06703 16 EDIADLIKVSLDAFDHEVVLQEMDGMD-AEELLAYDGIILGSYTWGDG-----DLP---YEAEDFHEDLEN-----IDLS 81 (151)
T ss_pred HHHHHHHHHHHHhcCCceEEEehhhCC-HHHHhcCCcEEEEECCCCCC-----cCc---HHHHHHHHHHhc-----CCCC
Confidence 456666666666655544333332211 1233 335666776555321 111 223444555432 2232
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEE
Q 022582 186 RGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVE 225 (295)
Q Consensus 186 ~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~ 225 (295)
+.+++++ ++|+.+.---.-..+.+.++|+++ |.++.
T Consensus 82 -~k~~~vf--g~g~~~y~~~~~a~~~l~~~l~~~-G~~~~ 117 (151)
T PRK06703 82 -GKKVAVF--GSGDTAYPLFCEAVTIFEERLVER-GAELV 117 (151)
T ss_pred -CCEEEEE--ccCCCChHHHHHHHHHHHHHHHHC-CCEEc
Confidence 5555555 566666432345667788888887 88654
No 87
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=22.15 E-value=2.3e+02 Score=27.00 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=32.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccc
Q 022582 185 TRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT 234 (295)
Q Consensus 185 ~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~T 234 (295)
..-+.+.++++.+|+.-.+++ ++.+.+.|+++ |.+....++|..-.
T Consensus 207 ~~a~~~GIiv~tl~~q~~~~~---~~~l~~~l~~~-gkk~y~~~~~~i~~ 252 (307)
T PF01866_consen 207 KDAKTFGIIVGTLGGQGYLEL---IKRLKKLLKKA-GKKSYTLSVGEINP 252 (307)
T ss_dssp TT--EEEEEEE-STTT--HHH---HHHHHHHHHHT-T-EEEEEEESS--G
T ss_pred hcCCEEEEEEecCCCCCCHHH---HHHHHHHHHHc-CCEEEEEEECCCCH
Confidence 445789999999999999985 78888888998 99999999986543
No 88
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=21.83 E-value=1.7e+02 Score=26.70 Aligned_cols=55 Identities=24% Similarity=0.448 Sum_probs=39.9
Q ss_pred eecCCccCCC---CHHHHHHHHHhcc-CCCceEEEee---------c----------------------cccccccHHHH
Q 022582 5 AICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVT---------N----------------------YTGDRLNFGLA 49 (295)
Q Consensus 5 av~G~VFaSP---s~~qIl~ai~~v~-~~~GvL~iv~---------N----------------------YtGD~lNFgmA 49 (295)
+..||+|.|= .-.|.-+|++.+. .+.||++..- | |..|--+||++
T Consensus 53 cltgDvl~s~rcdcg~ql~~al~~i~~~g~GVvvYLrqEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygig 132 (193)
T COG0807 53 CLTGDVLGSLRCDCGEQLEAALRRIAEEGSGVVVYLRQEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGIG 132 (193)
T ss_pred ccccchhcCCCCCcHHHHHHHHHHHhhcCceEEEEeecCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHHH
Confidence 5679999885 4566666777766 4578887654 1 23466789999
Q ss_pred HHHHHhcCCc
Q 022582 50 AEQAKSEGYK 59 (295)
Q Consensus 50 ~E~A~~~Gi~ 59 (295)
+++.+.-||+
T Consensus 133 AqIL~dLGI~ 142 (193)
T COG0807 133 AQILKDLGIK 142 (193)
T ss_pred HHHHHHcCCc
Confidence 9999988876
No 89
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=21.76 E-value=2.4e+02 Score=26.59 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHhccCCCceEEEee---ccccccccHHHHHHHHHhcCCcEEEEEecccccC
Q 022582 12 ASPPVDSILAGIHAVTGPMGCLLIVT---NYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCAL 71 (295)
Q Consensus 12 aSPs~~qIl~ai~~v~~~~GvL~iv~---NYtGD~lNFgmA~E~A~~~Gi~v~~viV~DDva~ 71 (295)
..++++++-+.++.....+-.++++. |.||+++.+.--.+.+++.| ..++-|++-.
T Consensus 145 ~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~----~~li~De~~~ 203 (385)
T TIGR01825 145 KHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYG----AVTYVDDAHG 203 (385)
T ss_pred CCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhC----CEEEEECccc
Confidence 35677777776765433333444444 88999999988888888876 4677787763
No 90
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=21.28 E-value=2e+02 Score=25.84 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=54.3
Q ss_pred cccccccHHHHH--HHHHhcCCcEEEE-EecccccCCCCCCCCCcccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHh
Q 022582 39 YTGDRLNFGLAA--EQAKSEGYKVEIV-IVGDDCALPPPRGIAGRRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASE 115 (295)
Q Consensus 39 YtGD~lNFgmA~--E~A~~~Gi~v~~v-iV~DDva~~~~~~~~gRRGlAGtvlv~KiaGAaAe~G~~L~ev~~~a~~~~~ 115 (295)
|..|..+.+-++ ..|+..|+++-.| +|+|...-..+......-.-.|.+-+.|++....++=..+-++.++++....
T Consensus 125 ~ga~aVdMEsaava~va~~~gip~~~ir~ISD~a~~~~~~~~~~~~~~~g~~~~~~ll~~l~~~p~~~~~l~~l~~~~~~ 204 (212)
T TIGR03468 125 TGAAAVDMESGAVAAVAAAAGLPFAVIRVISDPADRALPRAALDALRPDGSTALAALLRGLLRRPLRLPALIRLARDAQA 204 (212)
T ss_pred cCCcEEeChHHHHHHHHHHcCCCEEEEEEEeecCCCcCchhHHHhcCcccCccHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 444444444443 2355678887776 5566554332221122222456677899999999999999999999999887
Q ss_pred hhccce
Q 022582 116 MVGTMG 121 (295)
Q Consensus 116 ~~~Tig 121 (295)
..++++
T Consensus 205 a~~~L~ 210 (212)
T TIGR03468 205 ALATLR 210 (212)
T ss_pred HHHHHh
Confidence 776653
No 91
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=20.76 E-value=1.4e+02 Score=26.91 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=42.0
Q ss_pred cCCccCCCCHH--HHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecc
Q 022582 7 CGDVFASPPVD--SILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGD 67 (295)
Q Consensus 7 ~G~VFaSPs~~--qIl~ai~~v~~~~GvL~iv~NYtGD~lNFgmA~E~A~~~Gi~v~~viV~D 67 (295)
+|.++ +|-.+ .+.+.++. -+.-+++|+.++-|..-+==++.|.++.+|+++.-++++.
T Consensus 114 aGgl~-~p~~~~~~~~d~~~~--~~~pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~ 173 (231)
T PRK12374 114 TGGWR-SLMNDLRPLSEWVVQ--EQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANR 173 (231)
T ss_pred CCCcc-eeccCcccHHHHHHH--hCCCEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 45554 55532 23333443 4788999999999996666678888888999999999986
No 92
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=20.67 E-value=2.1e+02 Score=27.24 Aligned_cols=59 Identities=17% Similarity=0.402 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHH---------HHHHHHHHHHHhhhhhcCCeEEE
Q 022582 161 QPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVM---------ELMIAAGKAVPNLQLEHGLAVER 226 (295)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~~~~l~~~~gd~v~vlVNnLG~ts~l---------El~i~~~~v~~~L~~~~gi~v~r 226 (295)
.+.+++++..++.... +.+|-==.+||-|+|.+|.. =|..+.+++.+.+.--+|+++.|
T Consensus 21 ~~~~~i~e~A~~ea~~-------l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~ 88 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMA-------LEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLR 88 (257)
T ss_pred CCHHHHHHHHHHHHHH-------HHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeec
Confidence 3567888877776632 23333338899999999983 47778888887776556777766
No 93
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=20.63 E-value=91 Score=30.31 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=32.9
Q ss_pred eecCCcc--CCCCHHHHHHHHHhcc----CCCceEEEeecccc-ccccHHHHH
Q 022582 5 AICGDVF--ASPPVDSILAGIHAVT----GPMGCLLIVTNYTG-DRLNFGLAA 50 (295)
Q Consensus 5 av~G~VF--aSPs~~qIl~ai~~v~----~~~GvL~iv~NYtG-D~lNFgmA~ 50 (295)
.++||+| ..||++.+..+++.+. .+--|++|.+|+-. +++++....
T Consensus 45 liAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~~~~~~~~ 97 (390)
T COG0420 45 LIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSRLSEASPL 97 (390)
T ss_pred EEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhccccccch
Confidence 4689999 5688888887776654 35689999999954 455554443
No 94
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=20.54 E-value=3.9e+02 Score=23.15 Aligned_cols=98 Identities=18% Similarity=0.162 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhhhccceeeccccccCCCCCCCCcCCCeeEEe---ccccCCCCcccccCCCHHHHHHHHHHHHHcccC
Q 022582 103 LADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELG---LGIHGEPGAAVADLQPVDVVVSHVLKQILSTET 179 (295)
Q Consensus 103 L~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L~~~emE~G---~GIHGEpG~~r~~~~~a~~lv~~ml~~ll~~~~ 179 (295)
-+.|++++.++++.+-++=..-+ |-=...-+|+| +=||. +-+++++.| |+..
T Consensus 3 ~~~v~~~~~~i~~~i~~l~S~~d----------~~~~~~~~e~G~~wvWi~D----------N~~~~vRAL----l~~g- 57 (132)
T PF14468_consen 3 EERVKEYADRINEYISELYSKKD----------FLNDDYDREFGNAWVWIHD----------NQSEVVRAL----LQAG- 57 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhccch----------hhcccchhhcCceEEEEec----------CcCHHHHHH----HHcC-
Confidence 35577777777777666543322 11122334444 22332 234565544 4432
Q ss_pred CCCCCCCCCeEEEEEcCCCCC-hHHHHHHHHHHHHHhhhhhcCCeEEE
Q 022582 180 NYVPITRGNRVVLMINGLGAT-PVMELMIAAGKAVPNLQLEHGLAVER 226 (295)
Q Consensus 180 ~~l~~~~gd~v~vlVNnLG~t-s~lEl~i~~~~v~~~L~~~~gi~v~r 226 (295)
.+...+.-|..+=+|++++- |.=+.--+++++.++|..++|++-.+
T Consensus 58 -rV~v~~eGRYLl~l~~~~s~~plr~kE~~ak~vA~~L~~rF~vea~y 104 (132)
T PF14468_consen 58 -RVKVNKEGRYLLDLDLFDSDWPLRKKEAMAKHVAGWLRHRFGVEAGY 104 (132)
T ss_pred -ceeeccCceeeeecccccCCCchHHHHHHHHHHHHHHHHHhCcceeE
Confidence 24445566899999999994 44477789999999999999987654
Done!