BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022583
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 16 IAVFIAS-EENSAITGVG--VDAL-VKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWK 71
IA+ I S EE A+ G VD L +D L++ G +D G G +
Sbjct: 129 IALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDXIKNGRRGSLSGN 188
Query: 72 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETPSTMK 127
L V GK H PH AINP+ AL + + + FP P++ +
Sbjct: 189 LTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFP------------PTSFQ 236
Query: 128 PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ + G N IPGE V + R + + +R+ +D
Sbjct: 237 ISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILD 280
>pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
pdb|2POK|B Chain B, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
Length = 481
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 35/149 (23%)
Query: 53 IDTADKQPCIGTGGMI---PWKL--------HVTGKLFHSGLPHKAINPLELAMEALKVI 101
+ +AD GG++ PW L G++ GL + P E M L+
Sbjct: 234 VKSADVDIHSSYGGVVESAPWYLLQALQSLRAADGRILVEGLYEEVQEPNEREMALLETY 293
Query: 102 QTRFYKDFPPHPKEQVYGFETPS------------------TMKPTQWSYPGGGINQI-P 142
R P ++YG E P ++ Q Y G G+ I P
Sbjct: 294 GQR-----NPEEVSRIYGLELPLLQEERMAFLKRFFFDPALNIEGIQSGYQGQGVKTILP 348
Query: 143 GECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
E + +VRL P DV++++++ +D
Sbjct: 349 AEASAKLEVRLVPGLEPHDVLEKIRKQLD 377
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 32 GVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPL 91
GVD ++ +++ +K G +Y+ +P G +KL V GK H PH A + +
Sbjct: 156 GVDHVLGVHVMSTMKTGKVYY------RPGYVQTGRAFFKLKVQGKGGHGSSPHMANDAI 209
Query: 92 ELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGG-INQIPGECTVSGD 150
+ +QT + P FET T S+ G G N I + GD
Sbjct: 210 VAGSYFVTALQTVVSRRLSP--------FETGVV---TIGSFDGKGQFNVIKDVVEIEGD 258
Query: 151 VR-LTPFYNVT--DVMKRLQEYVDDI 173
VR LT T +KRL + ++D+
Sbjct: 259 VRGLTDATKATIEKEIKRLSKGLEDM 284
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 57 DKQPCIGTGGMIPWKLHVTGKLFHSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKE 115
D++ +GT G+ ++++TGK H+G P +N L A + V++T D + +
Sbjct: 184 DEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDL--VLRTMNIDDKAKNLR- 240
Query: 116 QVYGFETPSTMKPTQWSYPGGG--INQIPGECTVSGDVRLTPFYNVTDVMKRLQE 168
W+ G N IP T++ DVR + MK L+E
Sbjct: 241 -------------FNWTIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEE 282
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 219 GFHVLCKATE-EVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYG 262
F L K E +VV HV PYS T +I L D+G+++ G G
Sbjct: 75 NFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTG 119
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 26/175 (14%)
Query: 4 LGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC-- 61
L E + L+ TV+ +F +EE + G + ++G L ++ ++ I + + P
Sbjct: 132 LHEHRHHLQGTVVLIFQPAEEGLS----GAKKMREEGALKNVEA--IFGIHLSARIPFGK 185
Query: 62 ----IGT--GGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKE 115
G+ G ++ +TGK H+ +P I+P+ A + +Q ++ P +
Sbjct: 186 AASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSK 245
Query: 116 QVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170
V T S + G N IP T+ G +R F T + +R++E +
Sbjct: 246 VV----TVSKVN------GGNAFNVIPDSITIGGTLR--AFTGFTQLQQRVKEVI 288
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 233 HVNPYSITGTLPLIRELQDEGFDVQ--TAGYGL 263
+VNP+ + +PLI+EL+ +G+ +Q T G G+
Sbjct: 653 YVNPFMLQWGIPLIKELRSKGYPIQFLTIGAGV 685
>pdb|2RB7|A Chain A, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
pdb|2RB7|B Chain B, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
Length = 364
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 20/114 (17%)
Query: 66 GMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQV------YG 119
G+I KL TGK H P +N ++L E ++T F ++ H V G
Sbjct: 176 GIIDIKLTCTGKAAHGARPWXGVNAVDLLXEDYTRLKTLFAEENEDHWHRTVNLGRIRAG 235
Query: 120 FETPS---------TMKPTQWSYPGGGINQIPGECTVSGD---VRLTPFYNVTD 161
T ++ T+ PG I++I TVSG VR P + D
Sbjct: 236 ESTNKVPDVAEGWFNIRVTEHDDPGALIDKI--RKTVSGTVSIVRTVPVFLAAD 287
>pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1
pdb|3DLJ|B Chain B, Crystal Structure Of Human Carnosine Dipeptidase 1
Length = 485
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 13/69 (18%)
Query: 118 YGFETPSTMKPTQWSYPGGGINQI-------------PGECTVSGDVRLTPFYNVTDVMK 164
+ F+T + W YP I+ I PG +RL P NV+ V K
Sbjct: 307 FLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGTKTVIPGRVIGKFSIRLVPHMNVSAVEK 366
Query: 165 RLQEYVDDI 173
++ +++D+
Sbjct: 367 QVTRHLEDV 375
>pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex
Reveals A Sequence-Specific Read Out Of The Minor Groove
Length = 236
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 71 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ 130
KLH K S + + LAM + T F D P GFETP +P
Sbjct: 58 KLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPF 117
Query: 131 WSYPGGGINQIPGECTVSGDVRLT 154
+ G + SGDV L+
Sbjct: 118 YVGSNGD-----DSFSSSGDVSLS 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,679,010
Number of Sequences: 62578
Number of extensions: 439182
Number of successful extensions: 1054
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 13
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)