BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022583
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54638|ARGE_DICDI Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE
PE=1 SV=2
Length = 447
Score = 305 bits (780), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/297 (50%), Positives = 193/297 (64%), Gaps = 5/297 (1%)
Query: 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCI 62
+L K LK ++ AVFI SEEN I G+GVDAL G +N K GP+YW+D+AD QP I
Sbjct: 149 QLATEKPALKHSIFAVFIVSEENDEIPGIGVDALDHSGKMNPCKNGPVYWVDSADSQPTI 208
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET 122
GTGG W L GK HS +P++ +N +EL EAL IQ RFY DF PHPKE Y F+
Sbjct: 209 GTGGAQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDC 268
Query: 123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDT 182
STMKPT W G N IPGE T+ GD+RLTPFY++ ++ +++ Y+ DIN NI +L
Sbjct: 269 SSTMKPTLWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRN 328
Query: 183 RGPVSKYVLPD----ENIRGSLTLTF-DEATNGVACNLDSRGFHVLCKATEEVVGHVNPY 237
RGP SKY +P E ++GS+++ + EA+ GVAC LDS G+ L KAT E++G + P
Sbjct: 329 RGPYSKYDVPASEGVEPVKGSVSIEWLGEASAGVACKLDSDGYKALGKATSEILGSLTPV 388
Query: 238 SITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDMCQGYQVFVSIISQLE 294
+ GTLPL+R+LQD GFD+Q G+G TYHADNEY LLSD ++ I LE
Sbjct: 389 ATCGTLPLVRDLQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIKILSRTIDLLE 445
>sp|B2SQY5|DAPE_XANOP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv.
oryzae (strain PXO99A) GN=dapE PE=3 SV=1
Length = 376
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 24/172 (13%)
Query: 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC-------- 61
+ + +AV + S+E G +D + + L + +G + W T +
Sbjct: 119 RAHAGTLAVLLTSDEE----GDAIDGVRRVANLFRERGQAIDWCITGEPSSTERLGDLLR 174
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
+G G + L V G H PHKA NP+ LA AL + R + D GFE
Sbjct: 175 VGRRGSLSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFE 224
Query: 122 T--PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ P++++ + G N IPGE V+ ++R TP ++ + + +D
Sbjct: 225 SFPPTSLQVSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLETEITALLD 276
>sp|Q57899|Y457_METJA Uncharacterized metallohydrolase MJ0457 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0457 PE=3 SV=1
Length = 410
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 18/232 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G++ K ++ GK H P +N +A + Y+ F +++
Sbjct: 195 IGEKGILWIKFNIKGKQCHGSTPENGLNADIVAFNFANELYNGLYEKF-----DEINSIF 249
Query: 122 TP--STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEK 179
P ST +PT N IPG V D R+ P Y +++E ++ IN+ I+
Sbjct: 250 LPEYSTFEPTILKNKVENPNTIPGYVEVVFDCRILPTY-------KIEEVLEFINKFIKN 302
Query: 180 LDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSI 239
+ + + Y D +I+ +T ++ N + ++ L KA + V+
Sbjct: 303 FEFKKYIKHY---DNSIKAEITYEILKSENPNYTDENAEIIKELKKAIKNVLNRDAKLCG 359
Query: 240 TGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDMCQGYQVFVSIIS 291
G + L+ +G++V G G T H NE+ + D+ + +VF I+
Sbjct: 360 MGGGTVAAFLRYKGYNVAVWGIG-EETAHQPNEHIKIEDLVKMAEVFYEILK 410
>sp|Q3BVJ3|DAPE_XANC5 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=dapE PE=3 SV=1
Length = 376
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 13 STVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGT 64
S +AV + S+E G +D + + + + +G + W T + +G
Sbjct: 122 SGTLAVLLTSDEE----GDAIDGVRRVAEVFRERGQTIDWCITGEPSSTERLGDLLRVGR 177
Query: 65 GGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-- 122
G + L V G H PHKA NP+ LA AL + R + D GFE+
Sbjct: 178 RGSLSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFP 227
Query: 123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
P++++ + G N IPGE V+ ++R TP ++ + + +D
Sbjct: 228 PTSLQLSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q5H1C8|DAPE_XANOR Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv.
oryzae (strain KACC10331 / KXO85) GN=dapE PE=3 SV=2
Length = 376
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Query: 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC-------- 61
+ + +AV + S+E G +D + + L +G + W T +
Sbjct: 119 RAHAGTLAVLLTSDEE----GDAIDGVRRVANLFLERGQAIDWCITGEPSSTERLGDLLR 174
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
+G G + L V G H PHKA NP+ LA AL + R + D GFE
Sbjct: 175 VGRRGSLSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFE 224
Query: 122 T--PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ P++++ + G N IPGE V+ ++R TP ++ + + +D
Sbjct: 225 SFPPTSLQVSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q2P492|DAPE_XANOM Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=dapE PE=3 SV=1
Length = 376
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Query: 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC-------- 61
+ + +AV + S+E G +D + + L +G + W T +
Sbjct: 119 RAHAGTLAVLLTSDEE----GDAIDGVRRVANLFLERGQAIDWCITGEPSSTERLGDLLR 174
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
+G G + L V G H PHKA NP+ LA AL + R + D GFE
Sbjct: 175 VGRRGSLSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFE 224
Query: 122 T--PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ P++++ + G N IPGE V+ ++R TP ++ + + +D
Sbjct: 225 SFPPTSLQVSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q8PMJ5|DAPE_XANAC Succinyl-diaminopimelate desuccinylase OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=dapE PE=3 SV=1
Length = 376
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + + + + +G + W T + +G G
Sbjct: 125 LAVLLTSDEE----GDAIDGVRRVAEVFRERGQTIDWCITGEPSSTERLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ L V G H PHKA NP+ LA AL + R + D GFE+ P++
Sbjct: 181 LSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTS 230
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
++ + G N IPGE V+ ++R TP ++ + + +D
Sbjct: 231 LQLSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q8PAU0|DAPE_XANCP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dapE PE=3 SV=2
Length = 376
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + L +G + W T + +G G
Sbjct: 126 LAVLLTSDEE----GDAIDGVRHVARLFAERGQQIDWCITGEPSSTERLGDLLRVGRRGS 181
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ L V G H PHKA NP+ LA AL + R + D GFE+ P++
Sbjct: 182 LSGNLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTS 231
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166
++ + G N IPGE V+ ++R TP +N + + +
Sbjct: 232 LQISNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272
>sp|Q4USS4|DAPE_XANC8 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=dapE PE=3 SV=2
Length = 376
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + L +G + W T + +G G
Sbjct: 126 LAVLLTSDEE----GDAIDGVRHVARLFAERGQQIDWCITGEPSSTERLGDLLRVGRRGS 181
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ L V G H PHKA NP+ LA AL + R + D GFE+ P++
Sbjct: 182 LSGNLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTS 231
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166
++ + G N IPGE V+ ++R TP +N + + +
Sbjct: 232 LQISNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272
>sp|B0RW53|DAPE_XANCB Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. campestris (strain B100) GN=dapE PE=3 SV=1
Length = 376
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + L +G + W T + +G G
Sbjct: 126 LAVLLTSDEE----GDAIDGVRHVARLFAERGQQIDWCITGEPSSTERLGDLLRVGRRGS 181
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ L V G H PHKA NP+ LA AL + R + D GFE+ P++
Sbjct: 182 LSGNLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTS 231
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166
++ + G N IPGE V+ ++R TP +N + + +
Sbjct: 232 LQISNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272
>sp|Q6LXF3|Y1398_METMP Uncharacterized metallohydrolase MMP1398 OS=Methanococcus
maripaludis (strain S2 / LL) GN=MMP1398 PE=1 SV=1
Length = 415
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 32/302 (10%)
Query: 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGV------DALV--KDGLLNKLKGGPL-Y 51
++ + E K+ K + +F+A EE+ + G+ D + KD ++ G P
Sbjct: 133 LKMIFEEKIDPKYNLNLIFVADEEDGSKYGLSYLVNNFEDEIFSSKDLIIVPDFGMPEGE 192
Query: 52 WIDTADKQPCIGTGGMIPW-KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFP 110
+I+ A+K I W K +TGK H +P IN +A K + + Y +
Sbjct: 193 FIEIAEKN--------ILWLKFKITGKQCHGSVPENGINADLIAFSFGKGLYDKLYGKY- 243
Query: 111 PHPKEQVYGFETP--STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQE 168
+ + P ST +PT IN IPG ++ D R+ P Y+ +V+ ++
Sbjct: 244 ----DGINPIFNPAFSTFEPTILKNNIENINTIPGYVELNFDCRIIPKYDPKEVLSDIEN 299
Query: 169 YVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATE 228
Y++ IEK +S+ ENI S+T + DS L A +
Sbjct: 300 YIEVFKNEIEKHILHFDISE----KENI--SITYEILKLEKAEETKKDSEVVKKLGSAIK 353
Query: 229 EVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDMCQGYQVFVS 288
V+ + G + L+++G++ G G T H NE+ + ++ + +V++
Sbjct: 354 NVLNKESVLCGMGGGTVAAFLREKGYNTAVWGIG-DETAHQPNEHIKIENLIKMAEVYLD 412
Query: 289 II 290
I+
Sbjct: 413 IL 414
>sp|Q87F49|DAPE_XYLFT Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=dapE PE=3 SV=1
Length = 377
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+A+ + S+E G +D + K + +G + W T + +G G
Sbjct: 125 LAILLTSDEE----GQAIDGVRKVAETLRQRGQGIDWCLTGEPSSSKRLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTM 126
+ LHV G H PH+A NP+ LA+ A + R + D G+E+ PST
Sbjct: 181 LSATLHVKGVQGHVAYPHQARNPIHLALPAFAALTARHWDD----------GYESFPSTS 230
Query: 127 KPTQWSYPGGGINQ-IPGECTVSGDVRLTPFY 157
+ G G N IPG V+ ++R P +
Sbjct: 231 LQISNIHAGTGANNVIPGALEVAFNLRYNPHW 262
>sp|B2I6B4|DAPE_XYLF2 Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain M23) GN=dapE PE=3 SV=1
Length = 377
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+A+ + S+E G +D + K + +G + W T + +G G
Sbjct: 125 LAILLTSDEE----GQAIDGVRKVAETLRQRGQGIDWCLTGEPSSSKRLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTM 126
+ LHV G H PH+A NP+ LA+ A + R + D G+E+ PST
Sbjct: 181 LSATLHVKGVQGHVAYPHQARNPIHLALPAFAALTARHWDD----------GYESFPSTS 230
Query: 127 KPTQWSYPGGGINQ-IPGECTVSGDVRLTPFY 157
+ G G N IPG V+ ++R P +
Sbjct: 231 LQISNIHAGTGANNVIPGALEVAFNLRYNPHW 262
>sp|Q9PH30|DAPE_XYLFA Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain 9a5c) GN=dapE PE=3 SV=1
Length = 377
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+A+ + S+E G +D + K + +G + W T + +G G
Sbjct: 125 LAILLTSDEE----GQAIDGVRKVAETLRQRGQGIDWCLTGEPSSSKRLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTM 126
+ LHV G H PH+A NP+ LA+ AL + R + D G E+ PST
Sbjct: 181 LSATLHVKGVQGHVAYPHQARNPIHLAVPALAALTARHWDD----------GDESFPSTS 230
Query: 127 KPTQWSYPGGGINQ-IPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ G G N IPG V+ ++R P ++ + + +D
Sbjct: 231 LQISNIHAGTGANNVIPGALEVAFNLRYNPHWSAPRLESEIVALLD 276
>sp|B0U296|DAPE_XYLFM Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain M12) GN=dapE PE=3 SV=1
Length = 377
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+A+ + S+E G +D + K + +G + W T + +G G
Sbjct: 125 LAILLTSDEE----GQAIDGVRKVAETLRQRGQRIDWCLTGEPSSSERLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTM 126
+ LHV G H PH+A NP+ LA+ AL + R + D G E+ PST
Sbjct: 181 LSATLHVKGVQGHVAYPHQARNPIHLAVPALAALTGRHWDD----------GDESFPSTS 230
Query: 127 KPTQWSYPGGGINQ-IPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ G G N IPG V+ ++R P ++ + + +D
Sbjct: 231 LQISNIHAGTGANNVIPGALEVAFNLRYNPHWSAPRLESEIVALLD 276
>sp|Q8S9S4|ILL1_ORYSJ IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp.
japonica GN=ILL1 PE=2 SV=1
Length = 442
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC 61
R L E + +LK TV+ VF +EE G G ++ DG + ++ ++ + AD P
Sbjct: 149 RILQEHRDELKGTVVLVFQPAEEG----GGGAKKMIDDGAVENIEA--IFGVHVADVVP- 201
Query: 62 IGTGGMIP---------WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPH 112
IG P ++ ++GK H+ LPH I+P+ A + +Q ++ P
Sbjct: 202 IGVVASRPGPVMAGSGFFEAVISGKGGHAALPHHTIDPILAASNVIVSLQQLVSREADPL 261
Query: 113 PKEQVYGFETPSTMKPTQWSYPGGG-INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170
+ V T + GGG N IP T+ G R + + +R++E +
Sbjct: 262 DSQVV-----------TVGKFQGGGAFNVIPDSVTIGGTFRAFLKESFNQLKQRIEEVI 309
>sp|Q84XG9|ILL1_ORYSI IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. indica
GN=ILL1 PE=2 SV=1
Length = 442
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC 61
R L E + +LK TV+ VF +EE G G ++ DG + ++ ++ + AD P
Sbjct: 149 RILQEHRDELKGTVVLVFQPAEEG----GGGAKKMIDDGTVENIEA--IFGVHVADVVP- 201
Query: 62 IGTGGMIP---------WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPH 112
IG P ++ ++GK H+ LPH I+P+ A + +Q ++ P
Sbjct: 202 IGVVASRPGPVMAGSGFFEAVISGKGGHAALPHHTIDPILAASNVIVSLQQLVSREADPL 261
Query: 113 PKEQVYGFETPSTMKPTQWSYPGGG-INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170
+ V T + GGG N IP T+ G R + + +R++E +
Sbjct: 262 DSQVV-----------TVGKFQGGGAFNVIPDSVTIGGTFRAFLKESFNQLKQRIEEVI 309
>sp|B4SQ35|DAPE_STRM5 Succinyl-diaminopimelate desuccinylase OS=Stenotrophomonas
maltophilia (strain R551-3) GN=dapE PE=3 SV=1
Length = 375
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 24/166 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + L +G + W T + +G G
Sbjct: 125 LAVLLTSDEE----GDAIDGVRHVARLFAERGQRIDWCITGEPSSTATLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ KL V G H P KA NP+ A AL + R + D G+E+ P++
Sbjct: 181 LSAKLRVQGVQGHVAYPEKARNPIHQAAPALAELSARRWDD----------GYESFPPTS 230
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
++ + G N IPGE V ++R P ++ + + +D
Sbjct: 231 LQISNIHAGTGANNVIPGELEVDFNIRYNPHWDAPKLEAEITALLD 276
>sp|A3QGR1|DAPE2_SHELP Succinyl-diaminopimelate desuccinylase 2 OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=dapE2 PE=3 SV=1
Length = 377
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 55 TADKQPC----IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYK--- 107
TADKQ IG G I +L + GK H P A+N L +A ++ ++ +
Sbjct: 160 TADKQAGDVIKIGRRGAISARLTLKGKQGHVAYPKNAVNALHMAARVMQALEALIWDEGS 219
Query: 108 -DFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166
DFP ++++ T N +PG C + ++R + Y+ +M R+
Sbjct: 220 DDFPG------------TSLQVTHVDSGAFTDNIVPGSCEICFNIRYSYRYSEAGIMARI 267
Query: 167 QEYVDDINENIEKLDTR 183
Q +D ++ + + R
Sbjct: 268 QACLDGLSLGEDAISLR 284
>sp|B2FIC0|DAPE_STRMK Succinyl-diaminopimelate desuccinylase OS=Stenotrophomonas
maltophilia (strain K279a) GN=dapE PE=3 SV=1
Length = 375
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 24/154 (15%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + L +G + W T + +G G
Sbjct: 125 LAVLLTSDEE----GDAIDGVRHVARLFAARGQRIDWCITGEPSSTATLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ KL V G H P KA NP+ A AL + R + D G+E+ P++
Sbjct: 181 LSAKLRVQGVQGHVAYPEKARNPIHQAAPALAELCARRWDD----------GYESFPPTS 230
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159
++ + G N IPGE V ++R P ++
Sbjct: 231 LQISNIHAGTGANNVIPGELDVDFNIRYNPHWDA 264
>sp|Q0BUB7|DAPE_GRABC Succinyl-diaminopimelate desuccinylase OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=dapE
PE=3 SV=2
Length = 383
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G + L V G+ H PH+A NPL + AL + T D + GFE
Sbjct: 172 IGRRGSLNATLTVRGRQGHVAYPHRADNPLPRLVAALHALTTTRLDD-------GMEGFE 224
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172
PS+++ T N IP + ++R P + D+ + L+ V D
Sbjct: 225 -PSSLQLTTVDVGNPATNVIPEQAQARLNIRFNPLHRGDDLARWLRGIVQD 274
>sp|A7ZFC1|DAPE_CAMC1 Succinyl-diaminopimelate desuccinylase OS=Campylobacter concisus
(strain 13826) GN=dapE PE=3 SV=1
Length = 363
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 34/232 (14%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
+G G I K+ + G H P K INP+ L L I H + F
Sbjct: 165 VGRRGSINGKIVIKGVQGHVAYPEKCINPVNLIAPLLSKIAD--------HDMDGGSEFF 216
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLD 181
+PS + T N P E ++ +VR + +V DV L+ +D +
Sbjct: 217 SPSKIVVTDIRGGMQVCNVTPSELSIMFNVRNSNLTDVNDVESYLRSVLDGL-------- 268
Query: 182 TRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITG 241
S L+ +++ N DS+ L + ++ G + G
Sbjct: 269 -----------------SYELSIKQSSKRFLTNKDSKIVRNLMASVTKITGVTPLLNTKG 311
Query: 242 TLPLIRELQDEGFDVQTAGYGLMATYHADNEYCLLSDMCQGYQVFVSIISQL 293
R + G D G + HA NE +S++ + Y+VF +I
Sbjct: 312 GTSDARHFAEFGVDAIEFGV-INDRIHAKNERVSISEVNKLYEVFKDLIENF 362
>sp|A0L3N2|DAPE_MAGSM Succinyl-diaminopimelate desuccinylase OS=Magnetococcus sp. (strain
MC-1) GN=dapE PE=3 SV=2
Length = 380
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 61 CIGTG--GMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVY 118
CI G G + +L + G H PH NP+ A L I + + +Q
Sbjct: 174 CIKNGRRGSVNGRLTIRGVQGHVAYPHLVDNPIHRAAPVLAAISSMTF--------DQGD 225
Query: 119 GFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
F P++++ T G N +PGE T ++R + + + R+++ +D
Sbjct: 226 RFFQPTSLQFTAVQSGGSATNVVPGELTAGFNIRFSAMHTPESLEARIRQVLD 278
>sp|B4RDU4|DAPE_PHEZH Succinyl-diaminopimelate desuccinylase OS=Phenylobacterium zucineum
(strain HLK1) GN=dapE PE=3 SV=1
Length = 380
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
+G G I ++ V G H PH+A NP+ + + L +Q R + +P+ Q
Sbjct: 177 VGRRGSINAEILVEGIQGHVAYPHRAANPVPVLVRLLAALQDRALDE--GYPEFQ----- 229
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTP 155
PS ++ T P N IPG ++R P
Sbjct: 230 -PSNLEVTMIDVPNTATNVIPGTAKARLNIRFNP 262
>sp|Q87MI6|DAPE_VIBPA Succinyl-diaminopimelate desuccinylase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=dapE PE=3 SV=1
Length = 378
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVY 118
G G I L V G H PH A NP+ ++ A+ + T + FPP
Sbjct: 178 GRRGSITGDLTVKGTQGHVAYPHLANNPVHASLLAIHELATTEWDKGNDYFPP------T 231
Query: 119 GFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD--DINEN 176
F+ P+ T G N IPGE V ++R + N +++R+ E +D D+N +
Sbjct: 232 SFQIPNVSAGT------GASNVIPGEFNVQFNLRFSTELNNDTIVQRVTETLDKHDLNYD 285
Query: 177 I 177
+
Sbjct: 286 L 286
>sp|Q0A7H5|DAPE_ALHEH Succinyl-diaminopimelate desuccinylase OS=Alkalilimnicola ehrlichei
(strain MLHE-1) GN=dapE PE=3 SV=1
Length = 375
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYK---DFPPHPKEQV 117
+G G + +L V G H PH A NP+ A+ AL +++ TR+ + FPP
Sbjct: 175 VGRRGSLNGRLTVRGDQGHVAYPHLARNPVHQALAALDELVTTRWDEGNDHFPP------ 228
Query: 118 YGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
F+ + T G N IPGE V+ + R + ++ +R++ +D
Sbjct: 229 TSFQISNVQAGT------GATNVIPGELEVTFNFRFSTEVTADELQQRVEAVLD 276
>sp|Q8H3C7|ILL9_ORYSJ IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sativa subsp.
japonica GN=ILL9 PE=2 SV=2
Length = 440
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 24/176 (13%)
Query: 4 LGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWID--------T 55
L + K +LK TV VF +EE SA G ++++G+L+ + +D
Sbjct: 157 LQKRKNELKGTVKLVFQPAEEGSA----GAYYVLQEGVLDDVSAMFGMHVDPALPVGVVA 212
Query: 56 ADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKE 115
A P T G + +TGK H+ PH AI+P+ A A+ +Q ++ P
Sbjct: 213 ARPGPFAATSGR--FLATITGKGGHAAFPHDAIDPVVAASNAILSLQQIVAREIDP---- 266
Query: 116 QVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ + G N IP G +R + +MKR++E V+
Sbjct: 267 ------LQGAVVSITFVKGGEAYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVE 316
>sp|Q5LN80|DAPE_RUEPO Succinyl-diaminopimelate desuccinylase OS=Ruegeria pomeroyi (strain
ATCC 700808 / DSM 15171 / DSS-3) GN=dapE PE=3 SV=1
Length = 380
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 65 GGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPS 124
G M W VTG HS PH+A NPL R H +Q PS
Sbjct: 181 GSMTAW-FTVTGVQGHSAYPHRAKNPLP--------AMARLMDRLASHGLDQGTDHFDPS 231
Query: 125 TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENI 177
T+ N IP +C + ++R ++ + +Q D + E
Sbjct: 232 TLAVVTIDTGNTATNVIPAQCRGAVNIRFNDLHSGASLTGWMQGEADRVAEEF 284
>sp|Q886Q4|DAPE_PSESM Succinyl-diaminopimelate desuccinylase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=dapE PE=3 SV=1
Length = 383
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYG 119
G G + KL V GK H PH A NP+ LA AL + + DF P
Sbjct: 184 GRRGSLGAKLTVRGKQGHVAYPHLAKNPIHLATPALAELAAEHWDNGNDFFP-------- 235
Query: 120 FETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
P++ + + + G N IPG+ + R + V + +R+ +D
Sbjct: 236 ---PTSFQISNLNSGTGATNVIPGDLVAVFNFRFSTESTVEGLQQRVAAILD 284
>sp|O04373|ILL4_ARATH IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana
GN=ILL4 PE=1 SV=2
Length = 440
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 34/180 (18%)
Query: 4 LGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLL------------NKLKGGPLY 51
L E + +L+ TV+ VF +EE G G +V+ G+L N+L G +
Sbjct: 150 LKEHEEELQGTVVLVFQPAEEG----GGGAKKIVEAGVLENVSAIFGLHVTNQLALGQV- 204
Query: 52 WIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPP 111
++ + P + G +K ++GK H+ LP I+P+ A + +Q ++ P
Sbjct: 205 ---SSREGPMLAGSGF--FKAKISGKGGHAALPQHTIDPILAASNVIVSLQHLVSREADP 259
Query: 112 HPKEQVYGFETPSTMKPTQWSYPGGG-INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170
+ V T + GGG N IP T+ G R + + KR+++ +
Sbjct: 260 LDSQVV-----------TVAKFEGGGAFNVIPDSVTIGGTFRAFSTKSFMQLKKRIEQVI 308
>sp|B5FGX0|DAPE_VIBFM Succinyl-diaminopimelate desuccinylase OS=Vibrio fischeri (strain
MJ11) GN=dapE PE=3 SV=1
Length = 377
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVY 118
G G + L V G H PH A NP+ AM AL + T + + FPP
Sbjct: 178 GRRGSLTGNLTVKGIQGHVAYPHIARNPIHQAMPALSELATTVWDNGNDYFPP------T 231
Query: 119 GFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
F+ P+ T G N IPG + + R + V ++ +R+ E +D
Sbjct: 232 SFQIPNMNGGT------GASNVIPGTVDIMFNFRFSTESTVDELQQRVVEILD 278
>sp|Q2NS82|DAPE_SODGM Succinyl-diaminopimelate desuccinylase OS=Sodalis glossinidius
(strain morsitans) GN=dapE PE=3 SV=1
Length = 375
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALK-VIQTRFYKDFPPHPKEQVYGFE 121
G G + L V G H PH A NP AM ALK +++T++ ++ F
Sbjct: 176 GRRGSLTANLVVQGVQGHVAYPHLADNPFHRAMAALKELVETQW---------DEGNSFF 226
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKR 165
P+TM+ G N IPGE V + R + +TDV+ R
Sbjct: 227 PPTTMQIANIHAGTGSNNVIPGELLVQFNFRFST--ELTDVIIR 268
>sp|Q5E3I7|DAPE_VIBF1 Succinyl-diaminopimelate desuccinylase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=dapE PE=3 SV=1
Length = 377
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVY 118
G G + L V G H PH A NP+ AM AL + T + + FPP
Sbjct: 178 GRRGSLTGNLTVKGIQGHVAYPHIARNPIHQAMPALSELATTVWDNGNDYFPP------T 231
Query: 119 GFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
F+ P+ T G N IPG + + R + V ++ +R+ E +D
Sbjct: 232 SFQIPNMNGGT------GASNVIPGTVDIMFNFRFSTESTVDELQQRVVEILD 278
>sp|A6U5J1|DAPE_SINMW Succinyl-diaminopimelate desuccinylase OS=Sinorhizobium medicae
(strain WSM419) GN=dapE PE=3 SV=2
Length = 397
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 24/235 (10%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G + ++ V G H+ PH A NP+ ++ + + D F+
Sbjct: 182 IGRRGSLSGRITVQGVQGHAAYPHLADNPVRSILQLAHALMDPPFDD-------GTENFQ 234
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLD 181
PS ++ T +N IP + + + +VR + +M + +D
Sbjct: 235 -PSNLEVTTIDVGNAAVNVIPAKASAAFNVRFNDLWTAESLMTEIVARLDRAASAGALRP 293
Query: 182 TRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITG 241
R PV KY + ++E + V + L A E V G S TG
Sbjct: 294 GRAPV-KY-----------EIVWNERPSHVFLTRNDALIESLSGAVEAVTGQQPRLSTTG 341
Query: 242 TLPLIRELQDEGFDVQTAGYGLMA-TYHADNEYCLLSDMCQGYQVFVSIISQLED 295
R ++D V+ +GL+ T H +E L+D+ ++ + I++ D
Sbjct: 342 GTSDARFIKDYCPVVE---FGLVGKTMHMVDERVALADLETLTGIYETFIARWFD 393
>sp|C5BQE9|DAPE_TERTT Succinyl-diaminopimelate desuccinylase OS=Teredinibacter turnerae
(strain ATCC 39867 / T7901) GN=dapE PE=3 SV=1
Length = 375
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 26/163 (15%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTG--------GM 67
IA I S+E G+ + VK + +G + W + G G
Sbjct: 125 IAFLITSDEE----GIAANGTVKVVEWLEARGEKVTWCLVGEPSSTQSVGDVIKNGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYGFETPS 124
+ KL V GK H PH A NP+ L AL + + DF P QV F +
Sbjct: 181 LGCKLTVKGKQGHVAYPHLAKNPIHLVAPALADLAAEQWDEGNDFFPATSFQVSNFNAGT 240
Query: 125 TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167
G N IPGE + + R + ++ +R +
Sbjct: 241 -----------GATNVIPGEAAIVFNFRFSTESTADELKQRTE 272
>sp|B0T134|DAPE_CAUSK Succinyl-diaminopimelate desuccinylase OS=Caulobacter sp. (strain
K31) GN=dapE PE=3 SV=2
Length = 387
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G I + V G+ H P +A NP+ + ++ L +Q+R E GF+
Sbjct: 181 IGRRGSINAWIAVDGRQGHVAYPQRAANPIPVMVDILSRLQSRVL-------DEGYEGFQ 233
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172
PS ++ T N IP ++R P + D+ +++ D
Sbjct: 234 -PSNLEVTTIDVGNTATNVIPASAKARINIRFNPAHQGKDLRAWIEQECRD 283
>sp|A8GHK9|DAPE_SERP5 Succinyl-diaminopimelate desuccinylase OS=Serratia proteamaculans
(strain 568) GN=dapE PE=3 SV=1
Length = 375
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALK---VIQTRFYKDFPPHPKEQVYG 119
G G I LH+ G H PH A NP+ AM AL I+ +F P
Sbjct: 176 GRRGSITANLHIHGIQGHVAYPHLADNPVHRAMPALNELVAIEWDRGNEFFP-------- 227
Query: 120 FETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD--DINENI 177
P++M+ G N IPGE V + R + + +R++E ++ +N +I
Sbjct: 228 ---PTSMQIANVQAGTGSNNVIPGEMFVQFNFRFSTESTDATIKQRVEELLERHQLNYSI 284
Query: 178 E 178
E
Sbjct: 285 E 285
>sp|Q9ABF3|DAPE_CAUCR Succinyl-diaminopimelate desuccinylase OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=dapE PE=3 SV=1
Length = 386
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G I + V G+ H PH+A NP+ + ++ L ++ R D GF+
Sbjct: 180 IGRRGSINAWITVEGRQGHVAYPHRAANPVPVLVDILSALKARVLDD-------GYTGFQ 232
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167
PS ++ T N IP ++R P + D+ ++
Sbjct: 233 -PSNLEITTIDVGNTATNVIPAAAKARVNIRFNPAHKGKDLAAWIE 277
>sp|B8GYE7|DAPE_CAUCN Succinyl-diaminopimelate desuccinylase OS=Caulobacter crescentus
(strain NA1000 / CB15N) GN=dapE PE=3 SV=1
Length = 386
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G I + V G+ H PH+A NP+ + ++ L ++ R D GF+
Sbjct: 180 IGRRGSINAWITVEGRQGHVAYPHRAANPVPVLVDILSALKARVLDD-------GYTGFQ 232
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167
PS ++ T N IP ++R P + D+ ++
Sbjct: 233 -PSNLEITTIDVGNTATNVIPAAAKARVNIRFNPAHKGKDLAAWIE 277
>sp|Q9ZC93|DAPE_RICPR Succinyl-diaminopimelate desuccinylase OS=Rickettsia prowazekii
(strain Madrid E) GN=dapE PE=3 SV=1
Length = 383
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 32/234 (13%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYKDFPPHPKEQVYGF 120
IG G + +KL++ G H PHKA NPL ++ L ++I + ++ F
Sbjct: 179 IGRRGSVNFKLNIVGLAGHVAYPHKANNPLPCLIKILNELINIKL---------DEGTEF 229
Query: 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKL 180
S ++ T N IP ++R +NV + + +++ + + K+
Sbjct: 230 FQNSNLEVTNIDVDNDTSNTIPASAAAHFNIRFNSLHNVETLRQLIEQIIKQYCKEY-KV 288
Query: 181 DTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSIT 240
D + S S +F + N D+ E + + +S +
Sbjct: 289 DYKLEYS-----------SSAESFIQNPN------DNDKIKKFANVIERTLKIKSKFSTS 331
Query: 241 GTLPLIRELQDEGFDVQTAGYGLMATY-HADNEYCLLSDMCQGYQVFVSIISQL 293
G R ++D V+ +GL++ H NEY +SD+ + Y V+ + + ++
Sbjct: 332 GGTSDARFVKDYCSLVE---FGLLSDMAHKINEYTKISDLQKLYNVYYNFLIEI 382
>sp|B2VE50|DAPE_ERWT9 Succinyl-diaminopimelate desuccinylase OS=Erwinia tasmaniensis
(strain DSM 17950 / Et1/99) GN=dapE PE=3 SV=1
Length = 375
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYK--DFPPHPKEQVYG 119
G G I L + G H PH A NP+ AM AL +++ T + K +F P
Sbjct: 176 GRRGSITANLTIHGVQGHVAYPHLADNPVHRAMPALNELVATEWDKGNEFFP-------- 227
Query: 120 FETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175
P++M+ G N IPG+C V + R + +TDVM +Q+ V + E
Sbjct: 228 ---PTSMQIANVQAGTGSNNVIPGDCFVQFNFRFST--ELTDVM--IQQKVQALLE 276
>sp|Q6D7N4|DAPE_ERWCT Succinyl-diaminopimelate desuccinylase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=dapE
PE=3 SV=1
Length = 375
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYK--DFPPHPKEQVYG 119
G G I L + G H PH A NP+ A AL ++I T + + DF P
Sbjct: 176 GRRGSITANLRIHGMQGHVAYPHLADNPVHRAAPALNELIATEWDRGNDFFP-------- 227
Query: 120 FETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVM--KRLQEYVD 171
P+TM+ G N IPGE V + R + +TDV+ +R+ E +D
Sbjct: 228 ---PTTMQIANIQAGTGSNNVIPGELFVQFNFRFST--ELTDVLIQQRVAELLD 276
>sp|Q48F49|DAPE_PSE14 Succinyl-diaminopimelate desuccinylase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=dapE PE=3 SV=1
Length = 383
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYG 119
G G + L V GK H PH A NP+ LA+ AL + + DF P
Sbjct: 184 GRRGSLGATLTVRGKQGHVAYPHLAKNPIHLAVPALAELAAEHWDHGNDFFP-------- 235
Query: 120 FETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
P++ + + + G N IPG+ + R + V + +R+ +D
Sbjct: 236 ---PTSFQISNLNAGTGATNVIPGDLVAVFNFRFSTESTVEGLQQRVAAILD 284
>sp|A8F095|DAPE_RICCK Succinyl-diaminopimelate desuccinylase OS=Rickettsia canadensis
(strain McKiel) GN=dapE PE=3 SV=1
Length = 384
Score = 38.1 bits (87), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYKDFPPHPKEQVYGF 120
IG G + +KL++ G + H PHKA NPL ++ L ++I +F ++ F
Sbjct: 179 IGRRGSVNFKLNIEGLVGHVAYPHKANNPLSCLIKILNELINIKF---------DEGTEF 229
Query: 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170
S ++ T N IP ++R +N + + +++ V
Sbjct: 230 FQSSNLEVTNIDVGNNTSNVIPASVEAYFNIRFNNLHNAETLGQLIEQIV 279
>sp|A1KUW7|DAPE_NEIMF Succinyl-diaminopimelate desuccinylase OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=dapE PE=3 SV=1
Length = 381
Score = 38.1 bits (87), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 16 IAVFIAS-EENSAITGVG--VDAL-VKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWK 71
IA+ I S EE A+ G VD L +D L++ G +D G G +
Sbjct: 127 IALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGN 186
Query: 72 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETPSTMK 127
L V GK H PH AINP+ AL + + + FP P++ +
Sbjct: 187 LTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFP------------PTSFQ 234
Query: 128 PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ + G N IPGE V + R + + +R+ +D
Sbjct: 235 ISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILD 278
>sp|Q11LD2|DAPE_MESSB Succinyl-diaminopimelate desuccinylase OS=Mesorhizobium sp. (strain
BNC1) GN=dapE PE=3 SV=1
Length = 395
Score = 38.1 bits (87), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 34/234 (14%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY----KDFPPHPKEQV 117
IG G + ++ + G+ H PH A NP + L+ + + DFP
Sbjct: 183 IGRRGSLSGRITLFGRQGHVAYPHLADNPSRGLVALLEALMEPAFDQGTADFP------- 235
Query: 118 YGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENI 177
P+ ++ T +N IP T + +VR ++V + + +D
Sbjct: 236 -----PTNLEITTIDVGNPSVNVIPARATAAFNVRFNDTWSVETLQAEIHNRLD------ 284
Query: 178 EKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPY 237
R + P S L + + + V D + L + E V G
Sbjct: 285 -----RAAAENRLRPGRTEPVSFELEWRDRPSPVFLTRDDKLVATLAASIEAVTGRKPQL 339
Query: 238 SITGTLPLIRELQDEGFDVQTAGYGLMA-TYHADNEYCLLSD---MCQGYQVFV 287
S TG R ++D ++ +GL+ T H +E LSD + + YQ F+
Sbjct: 340 STTGGTSDARFIKDYCPVIE---FGLVGQTMHMVDEKVPLSDLETLTRIYQRFL 390
>sp|Q4UJR2|DAPE_RICFE Succinyl-diaminopimelate desuccinylase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dapE PE=3 SV=1
Length = 381
Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 42/238 (17%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYKDFPPHPKEQVYGF 120
IG G + +KL++ G H PHKA NPL ++ L ++ R K F
Sbjct: 179 IGRRGSVNFKLNIEGLSGHVAYPHKANNPLPCLIKILNELTNIRLDKGTE---------F 229
Query: 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE-- 178
S ++ T N IP S ++R ++ + K+++E + + +
Sbjct: 230 FQSSNLEVTNIDVGNNTSNVIPASTEASFNIRFNNLHSAETLAKQVEEIIKRYCKEYKVD 289
Query: 179 -KLDTRGPVSKYVL-PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP 236
KL+ ++ P++ I+ E V+
Sbjct: 290 YKLEYSSSADSFIQNPNDKIKD------------------------FADIVERVLKIKPE 325
Query: 237 YSITGTLPLIRELQDEGFDVQTAGYGLMA-TYHADNEYCLLSDMCQGYQVFVSIISQL 293
+S +G R ++D V+ +GL++ T H NEY +SD+ + Y V+ + + ++
Sbjct: 326 FSTSGGTSDARFVKDYCPLVE---FGLLSETAHKINEYTKISDLQKLYDVYYNFLMEI 380
>sp|Q9JYL2|DAPE_NEIMB Succinyl-diaminopimelate desuccinylase OS=Neisseria meningitidis
serogroup B (strain MC58) GN=dapE PE=1 SV=1
Length = 381
Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 16 IAVFIAS-EENSAITGVG--VDAL-VKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWK 71
IA+ I S EE A+ G VD L +D L++ G +D G G +
Sbjct: 127 IALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGN 186
Query: 72 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETPSTMK 127
L V GK H PH AINP+ AL + + + FP P++ +
Sbjct: 187 LTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFP------------PTSFQ 234
Query: 128 PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ + G N IPGE V + R + + +R+ +D
Sbjct: 235 ISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILD 278
>sp|A9ILD7|DAPE_BART1 Succinyl-diaminopimelate desuccinylase OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=dapE PE=3 SV=1
Length = 390
Score = 37.7 bits (86), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G I + V G+ H P +A NPL LA + ++ + T+ D + F+
Sbjct: 182 IGRRGSISGIITVKGRQGHVAFPERAANPLPLASKLIQAL-TQIALD------QGTENFQ 234
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175
PS ++ T +N IP + TV ++R + +M+ +++ + + E
Sbjct: 235 -PSNLELTTIDTGNLAVNVIPAQTTVRFNIRYNDLWTKETLMEEIEKRLSLVQE 287
>sp|Q5F812|DAPE_NEIG1 Succinyl-diaminopimelate desuccinylase OS=Neisseria gonorrhoeae
(strain ATCC 700825 / FA 1090) GN=dapE PE=3 SV=1
Length = 381
Score = 37.7 bits (86), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 16 IAVFIAS-EENSAITGVG--VDALVKDG-LLNKLKGGPLYWIDTADKQPCIGTGGMIPWK 71
IA+ I S EE A+ G VD L G L++ G +D G G +
Sbjct: 127 IALLITSDEEGDALDGTTKVVDVLKARGELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGS 186
Query: 72 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETPSTMK 127
L V GK H PH A+NP+ AL + + + FP P++ +
Sbjct: 187 LTVKGKQGHIAYPHLAVNPIHTFAPALLELTQEIWDEGNEYFP------------PTSFQ 234
Query: 128 PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ + G N IPGE V + R + T + +R+ +D
Sbjct: 235 ISNINGGTGATNVIPGELNVKFNFRFSTESTETGLKQRVHAILD 278
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,352,328
Number of Sequences: 539616
Number of extensions: 5485523
Number of successful extensions: 13139
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 13027
Number of HSP's gapped (non-prelim): 227
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)