Query 022584
Match_columns 295
No_of_seqs 156 out of 1113
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:39:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05486 Cathespin_E Cathepsin 100.0 8.1E-36 1.8E-40 278.9 20.2 190 1-293 127-316 (316)
2 cd05487 renin_like Renin stimu 100.0 1.6E-35 3.5E-40 278.2 21.8 191 1-294 136-326 (326)
3 cd05490 Cathepsin_D2 Cathepsin 100.0 3.3E-35 7.2E-40 275.6 20.3 191 1-293 135-325 (325)
4 cd06098 phytepsin Phytepsin, a 100.0 1.1E-34 2.3E-39 271.8 18.5 180 1-293 138-317 (317)
5 cd05485 Cathepsin_D_like Cathe 100.0 5.8E-34 1.3E-38 268.2 20.8 190 1-293 140-329 (329)
6 PTZ00165 aspartyl protease; Pr 100.0 8.9E-34 1.9E-38 279.2 19.3 184 1-295 255-447 (482)
7 cd05477 gastricsin Gastricsins 100.0 2.5E-33 5.5E-38 262.2 20.3 188 1-294 130-318 (318)
8 cd05488 Proteinase_A_fungi Fun 100.0 3.6E-33 7.7E-38 261.7 19.9 184 1-293 137-320 (320)
9 cd05478 pepsin_A Pepsin A, asp 100.0 3E-33 6.6E-38 261.7 19.1 181 1-293 137-317 (317)
10 PF00026 Asp: Eukaryotic aspar 100.0 7.3E-32 1.6E-36 249.8 15.1 188 1-294 130-317 (317)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 4E-31 8.6E-36 258.4 20.7 184 1-295 266-449 (450)
12 cd05474 SAP_like SAPs, pepsin- 100.0 2.7E-31 5.9E-36 244.9 18.3 186 1-294 100-295 (295)
13 PTZ00147 plasmepsin-1; Provisi 100.0 4.6E-31 9.9E-36 258.2 20.2 184 1-295 267-450 (453)
14 cd05472 cnd41_like Chloroplast 100.0 1.5E-27 3.3E-32 221.2 17.6 187 9-294 103-297 (299)
15 cd05473 beta_secretase_like Be 100.0 2.1E-27 4.5E-32 226.5 16.6 194 1-295 130-346 (364)
16 cd06097 Aspergillopepsin_like 99.9 6.1E-27 1.3E-31 215.1 14.5 145 2-293 133-278 (278)
17 cd06096 Plasmepsin_5 Plasmepsi 99.9 1.6E-26 3.4E-31 217.4 15.6 158 2-294 152-323 (326)
18 cd05489 xylanase_inhibitor_I_l 99.9 3E-26 6.4E-31 218.9 16.2 194 8-294 148-361 (362)
19 cd05476 pepsin_A_like_plant Ch 99.9 1.8E-25 3.8E-30 204.2 16.5 150 10-295 102-264 (265)
20 KOG1339 Aspartyl protease [Pos 99.9 2.2E-24 4.7E-29 208.4 19.7 181 11-294 199-392 (398)
21 cd05475 nucellin_like Nucellin 99.9 1.4E-24 3E-29 199.4 14.7 155 1-295 111-272 (273)
22 cd05471 pepsin_like Pepsin-lik 99.9 9.3E-24 2E-28 192.1 17.1 154 1-293 128-283 (283)
23 PLN03146 aspartyl protease fam 99.9 1.4E-21 3.1E-26 190.7 18.0 178 10-294 235-426 (431)
24 PF14541 TAXi_C: Xylanase inhi 99.8 7.7E-18 1.7E-22 143.3 11.5 153 52-293 1-161 (161)
25 PF03489 SapB_2: Saposin-like 98.6 4.9E-08 1.1E-12 62.0 4.2 35 106-140 1-35 (35)
26 KOG1340 Prosaposin [Lipid tran 98.6 1.4E-07 3E-12 83.9 7.3 97 108-217 78-175 (218)
27 PF05184 SapB_1: Saposin-like 98.3 9.6E-07 2.1E-11 57.2 3.7 37 168-204 3-39 (39)
28 smart00741 SapB Saposin (B) Do 97.2 0.00077 1.7E-08 48.8 5.1 38 103-140 39-76 (76)
29 KOG1340 Prosaposin [Lipid tran 96.4 0.0044 9.5E-08 55.4 4.4 47 97-143 160-206 (218)
30 smart00741 SapB Saposin (B) Do 95.2 0.025 5.4E-07 40.7 3.5 46 168-216 2-47 (76)
31 cd05479 RP_DDI RP_DDI; retrope 93.7 0.4 8.7E-06 38.8 7.8 25 267-291 100-124 (124)
32 TIGR02281 clan_AA_DTGA clan AA 91.6 0.35 7.6E-06 39.1 4.9 38 48-95 7-44 (121)
33 PF08284 RVP_2: Retroviral asp 91.1 0.77 1.7E-05 37.9 6.5 27 267-293 105-131 (135)
34 PF13650 Asp_protease_2: Aspar 85.1 1 2.2E-05 33.2 3.2 29 60-95 3-31 (90)
35 cd05483 retropepsin_like_bacte 84.9 1.6 3.5E-05 32.4 4.3 29 60-95 7-35 (96)
36 cd05484 retropepsin_like_LTR_2 83.9 1.5 3.3E-05 33.1 3.8 29 60-95 5-33 (91)
37 COG3577 Predicted aspartyl pro 83.4 1.9 4E-05 38.3 4.5 38 48-95 101-138 (215)
38 PF13975 gag-asp_proteas: gag- 80.2 4.1 9E-05 29.6 4.7 29 60-95 13-41 (72)
39 cd06095 RP_RTVL_H_like Retrope 77.7 2.3 5E-05 31.9 2.8 29 60-95 3-31 (86)
40 PF00077 RVP: Retroviral aspar 62.6 5.6 0.00012 30.2 2.0 26 60-92 10-35 (100)
41 cd05481 retropepsin_like_LTR_1 52.9 14 0.00031 28.3 2.8 30 60-96 3-33 (93)
42 PF09668 Asp_protease: Asparty 50.8 14 0.00031 30.2 2.6 29 60-95 29-57 (124)
43 TIGR03698 clan_AA_DTGF clan AA 44.6 15 0.00032 28.9 1.8 23 267-289 85-107 (107)
44 cd06094 RP_Saci_like RP_Saci_l 44.1 1.2E+02 0.0026 23.4 6.6 22 71-92 7-28 (89)
45 cd05470 pepsin_retropepsin_lik 43.6 16 0.00034 27.9 1.8 18 73-90 11-28 (109)
46 PF11938 DUF3456: TLR4 regulat 29.4 73 0.0016 26.6 3.7 38 168-205 3-67 (151)
47 cd06097 Aspergillopepsin_like 28.9 38 0.00083 30.6 2.1 27 59-90 4-30 (278)
48 COG5550 Predicted aspartyl pro 28.2 34 0.00074 28.0 1.4 22 76-97 29-51 (125)
49 cd05474 SAP_like SAPs, pepsin- 27.9 58 0.0013 29.5 3.1 25 59-88 6-30 (295)
50 cd00303 retropepsin_like Retro 24.8 1.2E+02 0.0025 20.3 3.6 21 75-95 11-31 (92)
51 cd06098 phytepsin Phytepsin, a 24.4 79 0.0017 29.3 3.4 32 51-90 9-40 (317)
52 cd05482 HIV_retropepsin_like R 24.2 71 0.0015 24.3 2.5 24 60-90 3-26 (87)
53 cd06096 Plasmepsin_5 Plasmepsi 24.0 64 0.0014 30.0 2.7 28 58-90 6-33 (326)
54 COG3364 Zn-ribbon containing p 23.2 76 0.0017 25.1 2.5 46 41-93 60-105 (112)
55 cd05475 nucellin_like Nucellin 21.4 82 0.0018 28.5 2.8 17 73-89 15-31 (273)
56 cd05490 Cathepsin_D2 Cathepsin 21.0 91 0.002 28.9 3.1 26 60-90 11-36 (325)
57 PF02160 Peptidase_A3: Caulifl 20.4 1.5E+02 0.0033 26.2 4.1 49 220-291 67-115 (201)
58 cd05487 renin_like Renin stimu 20.0 1E+02 0.0022 28.6 3.2 26 60-90 13-38 (326)
59 PF14201 DUF4318: Domain of un 20.0 1.9E+02 0.0041 21.4 3.9 45 188-239 16-60 (74)
No 1
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=8.1e-36 Score=278.95 Aligned_cols=190 Identities=45% Similarity=0.913 Sum_probs=164.3
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|++||+|++++||+||++++++...|+|+|||+|++++.|++.|+|+.+.++|.|+++++.|+++.+. +..+..++|||
T Consensus 127 l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDT 205 (316)
T cd05486 127 MMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDT 205 (316)
T ss_pred HHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECC
Confidence 57899999999999999865544579999999999999999999999999999999999999998764 23467899999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|+++++++.+.+++.
T Consensus 206 GTs~~~lP~~~~~~l~~~~~~~---------------------------------------------------------- 227 (316)
T cd05486 206 GTSLITGPSGDIKQLQNYIGAT---------------------------------------------------------- 227 (316)
T ss_pred CcchhhcCHHHHHHHHHHhCCc----------------------------------------------------------
Confidence 9999999999999988777543
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
...+.|.++|+....+|+|+|+|+|+.++|+|++|+
T Consensus 228 --------------------------------------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~ 263 (316)
T cd05486 228 --------------------------------------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYT 263 (316)
T ss_pred --------------------------------------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeE
Confidence 013458899998888999999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeee
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 293 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~ 293 (295)
+.....+.+.|+++|+..+..+..++.||||+.|||++|+|||.+++|||||+
T Consensus 264 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 264 LEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 87533345789999988765545567899999999999999999999999996
No 2
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.6e-35 Score=278.19 Aligned_cols=191 Identities=39% Similarity=0.908 Sum_probs=167.6
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|++||+|++++||+||.++++....|+|+|||+|++++.|++.|+|+.+.++|+|+++++.++++.+. +..+..++|||
T Consensus 136 L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDS 214 (326)
T cd05487 136 IMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDT 214 (326)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECC
Confidence 57899999999999999875444579999999999999999999999989999999999999998764 34567899999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|.++++++.+++++..
T Consensus 215 Gts~~~lP~~~~~~l~~~~~~~~--------------------------------------------------------- 237 (326)
T cd05487 215 GASFISGPTSSISKLMEALGAKE--------------------------------------------------------- 237 (326)
T ss_pred CccchhCcHHHHHHHHHHhCCcc---------------------------------------------------------
Confidence 99999999999999998886541
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
..+.|.+||+....+|.|+|+|++++++|++++|+
T Consensus 238 ---------------------------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi 272 (326)
T cd05487 238 ---------------------------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYV 272 (326)
T ss_pred ---------------------------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhE
Confidence 13458899998888999999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeec
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 294 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~ 294 (295)
++......+.|++.|+..+...+.++.||||++|||++|+|||++++|||||++
T Consensus 273 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 273 LQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 986655567899999987654445678999999999999999999999999986
No 3
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.3e-35 Score=275.63 Aligned_cols=191 Identities=52% Similarity=1.036 Sum_probs=164.0
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|++||+|++++||+||.++++...+|+|+|||+|++++.|++.|+|+.+..+|.|+++++.|++.... +..+..++|||
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDS 213 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTL-CKGGCEAIVDT 213 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeee-cCCCCEEEECC
Confidence 56899999999999999765443479999999999999999999999988999999999999987432 34567899999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|++++++|.+++++.
T Consensus 214 GTt~~~~p~~~~~~l~~~~~~~---------------------------------------------------------- 235 (325)
T cd05490 214 GTSLITGPVEEVRALQKAIGAV---------------------------------------------------------- 235 (325)
T ss_pred CCccccCCHHHHHHHHHHhCCc----------------------------------------------------------
Confidence 9999999999999998888542
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
+...+.|.++|+....+|+|+|+|+|+.++|+|++|+
T Consensus 236 -------------------------------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~ 272 (325)
T cd05490 236 -------------------------------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYI 272 (325)
T ss_pred -------------------------------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeE
Confidence 1123558899998888999999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeee
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 293 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~ 293 (295)
++........|++.|+..+.+++.++.||||++|||++|+|||++++|||||+
T Consensus 273 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 273 LKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 97654445689999988776555567899999999999999999999999996
No 4
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.1e-34 Score=271.82 Aligned_cols=180 Identities=78% Similarity=1.415 Sum_probs=156.8
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|++||+|++++||+||+++++....|+|+|||+|++++.|++.|+|+...++|.|+++++.|+++.+..+..+..++|||
T Consensus 138 l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDT 217 (317)
T cd06098 138 MVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADS 217 (317)
T ss_pred HHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEec
Confidence 57899999999999999765444579999999999999999999999988999999999999999877666678899999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|.++++++.
T Consensus 218 GTs~~~lP~~~~~~i~---------------------------------------------------------------- 233 (317)
T cd06098 218 GTSLLAGPTTIVTQIN---------------------------------------------------------------- 233 (317)
T ss_pred CCcceeCCHHHHHhhh----------------------------------------------------------------
Confidence 9999999988654331
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
+.++|+....+|+|+|+|+|+.++|+|++|+
T Consensus 234 -------------------------------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi 264 (317)
T cd06098 234 -------------------------------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYI 264 (317)
T ss_pred -------------------------------------------------ccCCccccccCCcEEEEECCEEEEEChHHeE
Confidence 2358987778999999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeee
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 293 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~ 293 (295)
++...+..+.|++++++.+.....++.||||++|||++|+|||++++|||||+
T Consensus 265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 265 LKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 98665556789999988765544567899999999999999999999999995
No 5
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.8e-34 Score=268.23 Aligned_cols=190 Identities=52% Similarity=1.040 Sum_probs=164.6
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|++||+|++++||+||.++++....|+|+|||+|++++.|++.|+|+.+.++|.|+++++.++++... ..+..++|||
T Consensus 140 l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDS 217 (329)
T cd05485 140 MVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADT 217 (329)
T ss_pred HHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEcc
Confidence 57899999999999999866544579999999999999999999999989999999999999998764 4466799999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|+++++++.+++++..
T Consensus 218 Gtt~~~lP~~~~~~l~~~~~~~~--------------------------------------------------------- 240 (329)
T cd05485 218 GTSLIAGPVDEIEKLNNAIGAKP--------------------------------------------------------- 240 (329)
T ss_pred CCcceeCCHHHHHHHHHHhCCcc---------------------------------------------------------
Confidence 99999999999999988885430
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
...+.|.++|+..+.+|.|+|+|+++.+.|+|++|+
T Consensus 241 --------------------------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi 276 (329)
T cd05485 241 --------------------------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYV 276 (329)
T ss_pred --------------------------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeE
Confidence 012458899998778999999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeee
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 293 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~ 293 (295)
++....+.++|++.++..+.++..++.||||+.|||++|+|||++++|||||.
T Consensus 277 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 277 LKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 98765556789999987665544566899999999999999999999999984
No 6
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=8.9e-34 Score=279.23 Aligned_cols=184 Identities=36% Similarity=0.786 Sum_probs=160.9
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCe--eeceEEEEccccceEEEEEceEEECCeeecccCCCceEEe
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF--KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 78 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~--~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~iv 78 (295)
|++||+|++++||+||+++++. +|+|+|||+|+.++ .|++.|+|+.+..||+|.++++.++++.+..+..++.+++
T Consensus 255 l~~qgli~~~~FS~yL~~~~~~--~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIi 332 (482)
T PTZ00165 255 IKKQNLLKRNIFSFYMSKDLNQ--PGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAI 332 (482)
T ss_pred HHHcCCcccceEEEEeccCCCC--CCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEE
Confidence 5789999999999999876533 79999999999766 5789999999999999999999999988776667889999
Q ss_pred cccccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeec
Q 022584 79 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEK 158 (295)
Q Consensus 79 DTGtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~ 158 (295)
||||+++++|.++++.+.+++++.
T Consensus 333 DTGTSli~lP~~~~~~i~~~i~~~-------------------------------------------------------- 356 (482)
T PTZ00165 333 DTGSSLITGPSSVINPLLEKIPLE-------------------------------------------------------- 356 (482)
T ss_pred cCCCccEeCCHHHHHHHHHHcCCc--------------------------------------------------------
Confidence 999999999999999998888543
Q ss_pred ccccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCE-----EEE
Q 022584 159 ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDK-----IFN 233 (295)
Q Consensus 159 ~~~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~-----~~~ 233 (295)
.+|+..+.+|+|+|.|+|. +|+
T Consensus 357 -----------------------------------------------------~~C~~~~~lP~itf~f~g~~g~~v~~~ 383 (482)
T PTZ00165 357 -----------------------------------------------------EDCSNKDSLPRISFVLEDVNGRKIKFD 383 (482)
T ss_pred -----------------------------------------------------ccccccccCCceEEEECCCCCceEEEE
Confidence 1788778899999999864 899
Q ss_pred ECcccceEEec--cccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeecC
Q 022584 234 LSPEQYILKTG--EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 295 (295)
Q Consensus 234 i~p~~y~~~~~--~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~~ 295 (295)
++|++|+++.. ....+.|+++++..+.+.+.++.||||++|||++|+|||.+|+|||||+++
T Consensus 384 l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 384 MDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred EchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence 99999999742 334578999999988766667889999999999999999999999999874
No 7
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.5e-33 Score=262.17 Aligned_cols=188 Identities=41% Similarity=0.842 Sum_probs=161.6
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|+++|+|++++||+||+++.. ..+|.|+|||+|++++.|++.|+|+.+..+|.|+++++.|+++....+..+..++|||
T Consensus 130 L~~~g~i~~~~FS~~L~~~~~-~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDS 208 (318)
T cd05477 130 MMQQNLLQAPIFSFYLSGQQG-QQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDT 208 (318)
T ss_pred HHhcCCcCCCEEEEEEcCCCC-CCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECC
Confidence 578999999999999997532 2369999999999999999999999988999999999999999876555667899999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|++++++|.+.+++..
T Consensus 209 Gtt~~~lP~~~~~~l~~~~~~~~--------------------------------------------------------- 231 (318)
T cd05477 209 GTSLLTAPQQVMSTLMQSIGAQQ--------------------------------------------------------- 231 (318)
T ss_pred CCccEECCHHHHHHHHHHhCCcc---------------------------------------------------------
Confidence 99999999999999998886540
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
...+.|.+||+....+|.|+|+|+|+++.++|++|+
T Consensus 232 --------------------------------------------~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~ 267 (318)
T cd05477 232 --------------------------------------------DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYI 267 (318)
T ss_pred --------------------------------------------ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeE
Confidence 123568999998888999999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCC-CCceEEchhhhccceEEEeCCCCeEEeeec
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPR-GPLWILGDVFMGVYHTVFDSGKLRIGFAEA 294 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~-~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~ 294 (295)
.+. .+.|+++++....+... ++.||||++|||++|+|||++++|||||++
T Consensus 268 ~~~----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 268 LQN----NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ecC----CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 863 45899999765433222 256999999999999999999999999985
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.6e-33 Score=261.67 Aligned_cols=184 Identities=39% Similarity=0.791 Sum_probs=158.9
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|++||+|++++||+||+++.. ..|.|+|||+|++++.|+++|+|+...++|.|+++++.++++.+.. .+..++|||
T Consensus 137 l~~qg~i~~~~FS~~L~~~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDS 212 (320)
T cd05488 137 MINQGLLDEPVFSFYLGSSEE--DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDT 212 (320)
T ss_pred HHhcCCCCCCEEEEEecCCCC--CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcC
Confidence 568999999999999998642 3799999999999999999999998889999999999999987753 356799999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|+++++.+.+.+++..
T Consensus 213 Gtt~~~lp~~~~~~l~~~~~~~~--------------------------------------------------------- 235 (320)
T cd05488 213 GTSLIALPSDLAEMLNAEIGAKK--------------------------------------------------------- 235 (320)
T ss_pred CcccccCCHHHHHHHHHHhCCcc---------------------------------------------------------
Confidence 99999999999999988885431
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
...+.|.++|+....+|.|+|+|+|++++|+|++|+
T Consensus 236 --------------------------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~ 271 (320)
T cd05488 236 --------------------------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYT 271 (320)
T ss_pred --------------------------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHhe
Confidence 123458899998888999999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeee
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 293 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~ 293 (295)
++. .+.|++.+...+.+...++.||||++|||++|+|||++++|||||+
T Consensus 272 ~~~----~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 272 LEV----SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred ecC----CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 853 3579999987655433456899999999999999999999999996
No 9
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3e-33 Score=261.67 Aligned_cols=181 Identities=43% Similarity=0.858 Sum_probs=157.9
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|++||+|++++||+||.++.. .+|+|+|||+|++++.|++.|+|+....+|.|+++++.|+++.+.. ..+..+++||
T Consensus 137 L~~~g~i~~~~FS~~L~~~~~--~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~-~~~~~~iiDT 213 (317)
T cd05478 137 MMSQGLVSQDLFSVYLSSNGQ--QGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVAC-SGGCQAIVDT 213 (317)
T ss_pred HHhCCCCCCCEEEEEeCCCCC--CCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEcc-CCCCEEEECC
Confidence 578999999999999998643 3699999999999999999999999889999999999999998753 3467899999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|++.++++.+++++..
T Consensus 214 Gts~~~lp~~~~~~l~~~~~~~~--------------------------------------------------------- 236 (317)
T cd05478 214 GTSLLVGPSSDIANIQSDIGASQ--------------------------------------------------------- 236 (317)
T ss_pred CchhhhCCHHHHHHHHHHhCCcc---------------------------------------------------------
Confidence 99999999999999998885430
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
...+.|.++|+....+|.|+|+|+|+.++|+|++|+
T Consensus 237 --------------------------------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~ 272 (317)
T cd05478 237 --------------------------------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYI 272 (317)
T ss_pred --------------------------------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHhe
Confidence 123458899998888999999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeee
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 293 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~ 293 (295)
.+. .+.|++.|+..+ .++.||||++|||++|+|||++++|||||+
T Consensus 273 ~~~----~~~C~~~~~~~~----~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 273 LQD----QGSCTSGFQSMG----LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ecC----CCEEeEEEEeCC----CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 763 468999888642 246799999999999999999999999996
No 10
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=99.98 E-value=7.3e-32 Score=249.81 Aligned_cols=188 Identities=37% Similarity=0.723 Sum_probs=166.1
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|++||+|++++||++|++.. ...|.|+|||+|++++.|+++|+|+...++|.+.+.++.+++... ....+..+++||
T Consensus 130 l~~~g~i~~~~fsl~l~~~~--~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dt 206 (317)
T PF00026_consen 130 LVQQGLISSNVFSLYLNPSD--SQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDT 206 (317)
T ss_dssp HHHTTSSSSSEEEEEEESTT--SSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEET
T ss_pred chhhccccccccceeeeecc--cccchheeeccccccccCceeccCccccccccccccccccccccc-ccccceeeeccc
Confidence 57899999999999999986 347999999999999999999999999999999999999999932 234567799999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
|++++++|.++++.+++.+++..
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~--------------------------------------------------------- 229 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSY--------------------------------------------------------- 229 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEE---------------------------------------------------------
T ss_pred ccccccccchhhHHHHhhhcccc---------------------------------------------------------
Confidence 99999999999999999997651
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
..+.|.++|+....+|.|+|.|++.+++++|++|+
T Consensus 230 ---------------------------------------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~ 264 (317)
T PF00026_consen 230 ---------------------------------------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYI 264 (317)
T ss_dssp ---------------------------------------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHE
T ss_pred ---------------------------------------------cceeEEEecccccccceEEEeeCCEEEEecchHhc
Confidence 01568999998888999999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeec
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 294 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~ 294 (295)
.+........|++.|..++. ....+.||||.+|||++|++||++++|||||+|
T Consensus 265 ~~~~~~~~~~C~~~i~~~~~-~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 265 FKIEDGNGGYCYLGIQPMDS-SDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEESSTTSSEEEESEEEESS-TTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccceeEeeeecccc-cccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 98776666699999998654 345678999999999999999999999999986
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=99.97 E-value=4e-31 Score=258.38 Aligned_cols=184 Identities=28% Similarity=0.551 Sum_probs=152.8
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|++||+|++++||+||++.+. .+|.|+|||+|++++.|++.|+|+.+..+|.|+++ +.++.... ....+++||
T Consensus 266 L~~qg~I~~~vFS~~L~~~~~--~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDS 338 (450)
T PTZ00013 266 LKNQNKIDNALFTFYLPVHDV--HAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDS 338 (450)
T ss_pred HHhccCcCCcEEEEEecCCCC--CCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECC
Confidence 578999999999999987532 37999999999999999999999998899999997 66665432 356699999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|+++++++.+.+++..
T Consensus 339 GTSli~lP~~~~~~i~~~l~~~~--------------------------------------------------------- 361 (450)
T PTZ00013 339 GTTTITAPSEFLNKFFANLNVIK--------------------------------------------------------- 361 (450)
T ss_pred CCccccCCHHHHHHHHHHhCCee---------------------------------------------------------
Confidence 99999999999999988875431
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
.+ ..+.|.++|+. ..+|+|+|.++|.+++|+|++|+
T Consensus 362 ------------------------------------------~~-~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi 397 (450)
T PTZ00013 362 ------------------------------------------VP-FLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYM 397 (450)
T ss_pred ------------------------------------------cC-CCCeEEeecCC-CCCCeEEEEECCEEEEECHHHhe
Confidence 01 13458889975 57899999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeecC
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 295 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~~ 295 (295)
.+......+.|++.+.+.+. .++.||||++|||++|+|||++++|||||+++
T Consensus 398 ~~~~~~~~~~C~~~i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 398 NPLLDVDDTLCMITMLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ehhccCCCCeeEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 76443345689999987532 23579999999999999999999999999975
No 12
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=99.97 E-value=2.7e-31 Score=244.86 Aligned_cols=186 Identities=26% Similarity=0.464 Sum_probs=157.5
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEcccc------ceEEEEEceEEECCeeec--ccCC
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK------GYWQFELGDILIGNQSTG--VCEG 72 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~------~~w~v~~~~i~v~~~~~~--~~~~ 72 (295)
|++||+|++++||+||.+.+. .+|.|+|||+|++++.|++.|+|+... .+|.|+++++.+++.... ....
T Consensus 100 L~~~g~i~~~~Fsl~l~~~~~--~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~ 177 (295)
T cd05474 100 LKKQGLIKKNAYSLYLNDLDA--STGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSK 177 (295)
T ss_pred HHHCCcccceEEEEEeCCCCC--CceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCC
Confidence 567999999999999998542 379999999999999999999999655 789999999999998753 2345
Q ss_pred CceEEecccccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccc
Q 022584 73 GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 152 (295)
Q Consensus 73 ~~~~ivDTGtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~ 152 (295)
...++|||||+++++|.++++++.+++++..
T Consensus 178 ~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~------------------------------------------------- 208 (295)
T cd05474 178 NLPALLDSGTTLTYLPSDIVDAIAKQLGATY------------------------------------------------- 208 (295)
T ss_pred CccEEECCCCccEeCCHHHHHHHHHHhCCEE-------------------------------------------------
Confidence 6789999999999999999999999886541
Q ss_pred eeeeecccccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEE
Q 022584 153 KTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIF 232 (295)
Q Consensus 153 ~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~ 232 (295)
....+.|.++|+.... |.|+|+|+|.++
T Consensus 209 ---------------------------------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~ 236 (295)
T cd05474 209 ---------------------------------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATI 236 (295)
T ss_pred ---------------------------------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEE
Confidence 0113458899997766 999999999999
Q ss_pred EECcccceEEecc--ccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeec
Q 022584 233 NLSPEQYILKTGE--GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 294 (295)
Q Consensus 233 ~i~p~~y~~~~~~--~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~ 294 (295)
+|++++|+++... ...+.|+..+++.+ .+.||||++|||++|++||.+++|||||+|
T Consensus 237 ~i~~~~~~~~~~~~~~~~~~C~~~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 237 SVPLSDLVLPASTDDGGDGACYLGIQPST-----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEHHHhEeccccCCCCCCCeEEEEEeCC-----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9999999987542 34679999898643 157999999999999999999999999986
No 13
>PTZ00147 plasmepsin-1; Provisional
Probab=99.97 E-value=4.6e-31 Score=258.24 Aligned_cols=184 Identities=29% Similarity=0.580 Sum_probs=154.0
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
|++||+|++++||+||++... ..|.|+|||+|++++.|++.|+|+.+..+|.|+++ ..+++.. .....+++||
T Consensus 267 L~~qg~I~~~vFS~~L~~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDS 339 (453)
T PTZ00147 267 LKNQNKIEQAVFTFYLPPEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDS 339 (453)
T ss_pred HHHcCCCCccEEEEEecCCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECC
Confidence 568999999999999987543 37999999999999999999999998899999998 4676643 2456799999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|+++++++.+++++..
T Consensus 340 GTsli~lP~~~~~ai~~~l~~~~--------------------------------------------------------- 362 (453)
T PTZ00147 340 GTSVITVPTEFLNKFVESLDVFK--------------------------------------------------------- 362 (453)
T ss_pred CCchhcCCHHHHHHHHHHhCCee---------------------------------------------------------
Confidence 99999999999999988885430
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
.+ ..+.|.++|+. ..+|+++|.++|..++|+|++|+
T Consensus 363 ------------------------------------------~~-~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi 398 (453)
T PTZ00147 363 ------------------------------------------VP-FLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYL 398 (453)
T ss_pred ------------------------------------------cC-CCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHhe
Confidence 01 12447889986 57899999999999999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeecC
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 295 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~~ 295 (295)
.+......+.|++++++.+. .++.||||++|||++|+|||.+++|||||+++
T Consensus 399 ~~~~~~~~~~C~~~i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 399 QPIEDIGSALCMLNIIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred eccccCCCcEEEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 86544455789999987543 23579999999999999999999999999975
No 14
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=99.95 E-value=1.5e-27 Score=221.17 Aligned_cols=187 Identities=22% Similarity=0.365 Sum_probs=138.6
Q ss_pred CCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEcccc----ceEEEEEceEEECCeeeccc---CCCceEEeccc
Q 022584 9 EEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK----GYWQFELGDILIGNQSTGVC---EGGCAAIVDSG 81 (295)
Q Consensus 9 ~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~----~~w~v~~~~i~v~~~~~~~~---~~~~~~ivDTG 81 (295)
+++||+||.+.. ...+|+|+|||+|++ .|++.|+|+... .+|.|++++|.|+++.+... .....+++|||
T Consensus 103 ~~~FS~~L~~~~-~~~~G~l~fGg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSG 179 (299)
T cd05472 103 GGVFSYCLPDRS-SSSSGYLSFGAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSG 179 (299)
T ss_pred cCceEEEccCCC-CCCCceEEeCCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCC
Confidence 589999998754 123799999999998 899999998653 68999999999999987642 23567999999
Q ss_pred ccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeecccc
Q 022584 82 TSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENV 161 (295)
Q Consensus 82 tt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~~ 161 (295)
|+++++|+++++++.+++.+.. ...... ..
T Consensus 180 Tt~~~lp~~~~~~l~~~l~~~~----------------------~~~~~~-------------------------~~--- 209 (299)
T cd05472 180 TVITRLPPSAYAALRDAFRAAM----------------------AAYPRA-------------------------PG--- 209 (299)
T ss_pred CcceecCHHHHHHHHHHHHHHh----------------------ccCCCC-------------------------CC---
Confidence 9999999999999998885320 000000 00
Q ss_pred cCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEEC-CEEEEECcccce
Q 022584 162 SAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYI 240 (295)
Q Consensus 162 ~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~-g~~~~i~p~~y~ 240 (295)
. ..-..|+. ++|.....+|+|+|+|+ +++++|+|++|+
T Consensus 210 ----------------------------~----~~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~ 248 (299)
T cd05472 210 ----------------------------F----SILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGVL 248 (299)
T ss_pred ----------------------------C----CCCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccEE
Confidence 0 00001222 12333457999999997 899999999999
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeec
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 294 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~ 294 (295)
+... .....|+ ++...+ ..++.||||+.|||++|+|||++++|||||++
T Consensus 249 ~~~~-~~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 249 YPVD-DSSQVCL-AFAGTS---DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred EEec-CCCCEEE-EEeCCC---CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 8432 2356797 454321 23457999999999999999999999999986
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=99.95 E-value=2.1e-27 Score=226.47 Aligned_cols=194 Identities=27% Similarity=0.434 Sum_probs=146.1
Q ss_pred CccCCCCCCCeEEEEeecCC-------CCCCCcEEEECCcCCCCeeeceEEEEccccceEEEEEceEEECCeeecccCC-
Q 022584 1 MVEQGLVSEEVFSFWLNRDP-------DAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEG- 72 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~-------~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~- 72 (295)
|++|+.+ +++||+||+... .....|.|+|||+|++++.|++.|+|+.+..+|.|.+.++.|+++.+.....
T Consensus 130 l~~q~~~-~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~ 208 (364)
T cd05473 130 LVKQTGI-PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKE 208 (364)
T ss_pred HHhccCC-ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEeccccccc
Confidence 4678887 579999986421 2234799999999999999999999999889999999999999988764321
Q ss_pred --CceEEecccccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccc
Q 022584 73 --GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVST 150 (295)
Q Consensus 73 --~~~~ivDTGtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~ 150 (295)
...++|||||+++++|+++++++.+++++... .+
T Consensus 209 ~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~------------------------~~-------------------- 244 (364)
T cd05473 209 YNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASL------------------------IE-------------------- 244 (364)
T ss_pred ccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcc------------------------cc--------------------
Confidence 24699999999999999999999998865410 00
Q ss_pred cceeeeecccccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCC-CCceEEecccCC-----CCCcEE
Q 022584 151 GIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP-MGESIIDCDRIP-----TMPNVS 224 (295)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~-~g~~~~~C~~~~-----~lp~i~ 224 (295)
..+.. .+.+.++|.... .+|+|+
T Consensus 245 ---------------------------------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~ 273 (364)
T cd05473 245 ---------------------------------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKIS 273 (364)
T ss_pred ---------------------------------------------------cCCccccCcceeecccccCchHhhCCcEE
Confidence 00000 122346786433 589999
Q ss_pred EEECC------EEEEECcccceEEecc-ccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeecC
Q 022584 225 FTIGD------KIFNLSPEQYILKTGE-GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 295 (295)
Q Consensus 225 f~~~g------~~~~i~p~~y~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~~ 295 (295)
|+|+| ..+.|+|++|+..... .....|+. +... ...+.||||+.|||++|+|||.+++|||||+++
T Consensus 274 ~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~-~~~~----~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 274 IYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYK-FAIS----QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred EEEccCCCCceEEEEECHHHhhhhhccCCCcceeeE-Eeee----cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 99964 4689999999986432 23467985 2111 123469999999999999999999999999863
No 16
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=99.94 E-value=6.1e-27 Score=215.15 Aligned_cols=145 Identities=30% Similarity=0.581 Sum_probs=122.6
Q ss_pred ccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccc-cceEEEEEceEEECCeeecccCCCceEEecc
Q 022584 2 VEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDS 80 (295)
Q Consensus 2 ~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~-~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDT 80 (295)
++|+. +++||+||.+.. .|+|+|||+|++++.|++.|+|+.+ .++|.|+++++.|+++... ...+..++|||
T Consensus 133 ~~~~~--~~~Fs~~l~~~~----~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDS 205 (278)
T cd06097 133 LSSLD--APLFTADLRKAA----PGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADT 205 (278)
T ss_pred HHhcc--CceEEEEecCCC----CcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeec
Confidence 34543 799999998732 7999999999999999999999976 7899999999999998432 34578899999
Q ss_pred cccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeeccc
Q 022584 81 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN 160 (295)
Q Consensus 81 Gtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~ 160 (295)
||+++++|.++++++.+++++..
T Consensus 206 GTs~~~lP~~~~~~l~~~l~g~~--------------------------------------------------------- 228 (278)
T cd06097 206 GTTLILLPDAIVEAYYSQVPGAY--------------------------------------------------------- 228 (278)
T ss_pred CCchhcCCHHHHHHHHHhCcCCc---------------------------------------------------------
Confidence 99999999999999998884320
Q ss_pred ccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccce
Q 022584 161 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYI 240 (295)
Q Consensus 161 ~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y~ 240 (295)
.....+.|.+||+.. +|+|+|+|
T Consensus 229 ------------------------------------------~~~~~~~~~~~C~~~--~P~i~f~~------------- 251 (278)
T cd06097 229 ------------------------------------------YDSEYGGWVFPCDTT--LPDLSFAV------------- 251 (278)
T ss_pred ------------------------------------------ccCCCCEEEEECCCC--CCCEEEEE-------------
Confidence 012356699999963 89999998
Q ss_pred EEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeee
Q 022584 241 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 293 (295)
Q Consensus 241 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~ 293 (295)
.||||++|||++|+|||++|+|||||+
T Consensus 252 --------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 489999999999999999999999995
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=99.94 E-value=1.6e-26 Score=217.36 Aligned_cols=158 Identities=27% Similarity=0.442 Sum_probs=130.6
Q ss_pred ccCCCCCC--CeEEEEeecCCCCCCCcEEEECCcCCCCee----------eceEEEEccccceEEEEEceEEECCee-ec
Q 022584 2 VEQGLVSE--EVFSFWLNRDPDAEEGGEIVFGGVDPKHFK----------GKHTYVPVTKKGYWQFELGDILIGNQS-TG 68 (295)
Q Consensus 2 ~~qg~i~~--~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~----------g~l~~~p~~~~~~w~v~~~~i~v~~~~-~~ 68 (295)
++++.+.. ++||+||+++ +|.|+|||+|++++. +++.|+|+.+..+|.|++++|.++++. ..
T Consensus 152 ~~~~~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~ 226 (326)
T cd06096 152 FTKRPKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNS 226 (326)
T ss_pred HHhcccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccce
Confidence 35555554 9999999864 699999999999887 799999998889999999999999886 11
Q ss_pred ccCCCceEEecccccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccc
Q 022584 69 VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYV 148 (295)
Q Consensus 69 ~~~~~~~~ivDTGtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~ 148 (295)
.......++|||||+++++|+++++.+.++
T Consensus 227 ~~~~~~~aivDSGTs~~~lp~~~~~~l~~~-------------------------------------------------- 256 (326)
T cd06096 227 GNTKGLGMLVDSGSTLSHFPEDLYNKINNF-------------------------------------------------- 256 (326)
T ss_pred ecccCCCEEEeCCCCcccCCHHHHHHHHhh--------------------------------------------------
Confidence 124577899999999999999988766331
Q ss_pred cccceeeeecccccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEEC
Q 022584 149 STGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG 228 (295)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~ 228 (295)
+|+|+|.|+
T Consensus 257 -----------------------------------------------------------------------~P~i~~~f~ 265 (326)
T cd06096 257 -----------------------------------------------------------------------FPTITIIFE 265 (326)
T ss_pred -----------------------------------------------------------------------cCcEEEEEc
Confidence 188999998
Q ss_pred -CEEEEECcccceEEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeec
Q 022584 229 -DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 294 (295)
Q Consensus 229 -g~~~~i~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~ 294 (295)
|+.++++|++|++.... ..|...+.. ..+.||||++|||++|+|||.+++|||||++
T Consensus 266 ~g~~~~i~p~~y~~~~~~---~~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 266 NNLKIDWKPSSYLYKKES---FWCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred CCcEEEECHHHhccccCC---ceEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 89999999999987533 247766543 2357999999999999999999999999986
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=99.94 E-value=3e-26 Score=218.93 Aligned_cols=194 Identities=15% Similarity=0.257 Sum_probs=143.9
Q ss_pred CCCeEEEEeecCCCCCCCcEEEECCcCCCCee------eceEEEEcccc----ceEEEEEceEEECCeeeccc-------
Q 022584 8 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK------GKHTYVPVTKK----GYWQFELGDILIGNQSTGVC------- 70 (295)
Q Consensus 8 ~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~------g~l~~~p~~~~----~~w~v~~~~i~v~~~~~~~~------- 70 (295)
.+++||+||.++.+ ..|.|+|||.++.++. +.+.|+|+... .+|.|++++|.||++.+.+.
T Consensus 148 ~~~~FS~CL~~~~~--~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 148 VARKFALCLPSSPG--GPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred CCcceEEEeCCCCC--CCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccc
Confidence 46899999987643 3799999999987764 78999999653 79999999999999987642
Q ss_pred -CCCceEEecccccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCccccc
Q 022584 71 -EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVS 149 (295)
Q Consensus 71 -~~~~~~ivDTGtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~ 149 (295)
.+...++|||||+++++|+++|+++.+++... +..+. ...+
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~----------~~~~~---------~~~~------------------- 267 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKA----------TARIP---------RVPA------------------- 267 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHH----------hcccC---------cCCC-------------------
Confidence 22456999999999999999999999988532 00000 0000
Q ss_pred ccceeeeecccccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECC
Q 022584 150 TGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD 229 (295)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g 229 (295)
...+...|+.... ...|+....+|.|+|+|+|
T Consensus 268 -------------------------------------------~~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g 299 (362)
T cd05489 268 -------------------------------------------AAVFPELCYPASA-----LGNTRLGYAVPAIDLVLDG 299 (362)
T ss_pred -------------------------------------------CCCCcCccccCCC-----cCCcccccccceEEEEEeC
Confidence 0001134555432 1133334689999999975
Q ss_pred --EEEEECcccceEEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeec
Q 022584 230 --KIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 294 (295)
Q Consensus 230 --~~~~i~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~ 294 (295)
+++.|+|++|+++..+ ..+|. +|...+.. .++.||||+.|||++|++||.+++|||||++
T Consensus 300 ~g~~~~l~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 300 GGVNWTIFGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CCeEEEEcCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999999998643 46795 66654321 2467999999999999999999999999975
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=99.93 E-value=1.8e-25 Score=204.24 Aligned_cols=150 Identities=26% Similarity=0.502 Sum_probs=125.1
Q ss_pred CeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccc----cceEEEEEceEEECCeeecc--------cCCCceEE
Q 022584 10 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGV--------CEGGCAAI 77 (295)
Q Consensus 10 ~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~~~~i~v~~~~~~~--------~~~~~~~i 77 (295)
++||+||.++.+....|+|+|||+|++ +.+++.|+|+.. .++|.|++++|.++++.+.+ ......++
T Consensus 102 ~~Fs~~l~~~~~~~~~G~l~fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai 180 (265)
T cd05476 102 NKFSYCLVPHDDTGGSSPLILGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTI 180 (265)
T ss_pred CeeEEEccCCCCCCCCCeEEECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEE
Confidence 799999998543344799999999999 899999999965 57999999999999997652 24567899
Q ss_pred ecccccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeee
Q 022584 78 VDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVE 157 (295)
Q Consensus 78 vDTGtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~ 157 (295)
+||||+++++|+++
T Consensus 181 ~DTGTs~~~lp~~~------------------------------------------------------------------ 194 (265)
T cd05476 181 IDSGTTLTYLPDPA------------------------------------------------------------------ 194 (265)
T ss_pred EeCCCcceEcCccc------------------------------------------------------------------
Confidence 99999999999662
Q ss_pred cccccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEEC-CEEEEECc
Q 022584 158 KENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSP 236 (295)
Q Consensus 158 ~~~~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~-g~~~~i~p 236 (295)
+|+|+|.|+ ++.+.+++
T Consensus 195 --------------------------------------------------------------~P~i~~~f~~~~~~~i~~ 212 (265)
T cd05476 195 --------------------------------------------------------------YPDLTLHFDGGADLELPP 212 (265)
T ss_pred --------------------------------------------------------------cCCEEEEECCCCEEEeCc
Confidence 188999998 89999999
Q ss_pred ccceEEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeecC
Q 022584 237 EQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 295 (295)
Q Consensus 237 ~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~~ 295 (295)
++|+.+. ..+..|.+ +... ...+.||||++|||++|++||.+++|||||++.
T Consensus 213 ~~y~~~~--~~~~~C~~-~~~~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 213 ENYFVDV--GEGVVCLA-ILSS----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred ccEEEEC--CCCCEEEE-EecC----CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 9999853 24568975 4332 145679999999999999999999999999863
No 20
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-24 Score=208.38 Aligned_cols=181 Identities=41% Similarity=0.775 Sum_probs=149.4
Q ss_pred eEEEEeecCCCC-CCCcEEEECCcCCCCeeeceEEEEccccc--eEEEEEceEEECCee----ecccCCCceEEeccccc
Q 022584 11 VFSFWLNRDPDA-EEGGEIVFGGVDPKHFKGKHTYVPVTKKG--YWQFELGDILIGNQS----TGVCEGGCAAIVDSGTS 83 (295)
Q Consensus 11 ~Fs~~l~~~~~~-~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~--~w~v~~~~i~v~~~~----~~~~~~~~~~ivDTGtt 83 (295)
+||+||.+.... ..+|.|+||++|+.++.+.+.|+|+.... +|.|++.+|.|+++. ...+....++++||||+
T Consensus 199 ~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs 278 (398)
T KOG1339|consen 199 VFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTS 278 (398)
T ss_pred eEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcc
Confidence 799999988643 25899999999999999999999998877 999999999999843 22223358899999999
Q ss_pred ccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeecccccC
Q 022584 84 LLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA 163 (295)
Q Consensus 84 ~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 163 (295)
++++|.++|+++.+++++.-
T Consensus 279 ~t~lp~~~y~~i~~~~~~~~------------------------------------------------------------ 298 (398)
T KOG1339|consen 279 LTYLPTSAYNALREAIGAEV------------------------------------------------------------ 298 (398)
T ss_pred eeeccHHHHHHHHHHHHhhe------------------------------------------------------------
Confidence 99999999999999996640
Q ss_pred CCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCC----CCcEEEEEC-CEEEEECccc
Q 022584 164 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPT----MPNVSFTIG-DKIFNLSPEQ 238 (295)
Q Consensus 164 ~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~----lp~i~f~~~-g~~~~i~p~~ 238 (295)
.++...+.+.++|..... +|.|+|+|+ |+.+.+++++
T Consensus 299 --------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~ 340 (398)
T KOG1339|consen 299 --------------------------------------SVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKN 340 (398)
T ss_pred --------------------------------------eccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccc
Confidence 001234557788987766 999999999 8999999999
Q ss_pred ceEEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCC-CCeEEeeec
Q 022584 239 YILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG-KLRIGFAEA 294 (295)
Q Consensus 239 y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~-~~rIGfa~~ 294 (295)
|+++...+... |.+.+...+.+ +.||||+.|||+++++||.. ++|||||++
T Consensus 341 y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 341 YLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred eEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 99987654222 99888754321 68999999999999999999 999999985
No 21
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=99.92 E-value=1.4e-24 Score=199.39 Aligned_cols=155 Identities=23% Similarity=0.449 Sum_probs=126.5
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEcccc---ceEEEEEceEEECCeeecccCCCceEE
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK---GYWQFELGDILIGNQSTGVCEGGCAAI 77 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~---~~w~v~~~~i~v~~~~~~~~~~~~~~i 77 (295)
|+++++| +++||+||.+.. +|.|+|| |..++.+++.|+|+.+. .+|.|++.+|+|+++... ..+..++
T Consensus 111 l~~~~~i-~~~Fs~~l~~~~----~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~i 181 (273)
T cd05475 111 LASQGII-KNVIGHCLSSNG----GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVV 181 (273)
T ss_pred HHhcCCc-CceEEEEccCCC----CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEE
Confidence 4568889 899999998732 6899998 45667789999999764 799999999999998653 4567899
Q ss_pred ecccccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeee
Q 022584 78 VDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVE 157 (295)
Q Consensus 78 vDTGtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~ 157 (295)
|||||+++++|++++
T Consensus 182 vDTGTt~t~lp~~~y----------------------------------------------------------------- 196 (273)
T cd05475 182 FDSGSSYTYFNAQAY----------------------------------------------------------------- 196 (273)
T ss_pred EECCCceEEcCCccc-----------------------------------------------------------------
Confidence 999999999997621
Q ss_pred cccccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECC----EEEE
Q 022584 158 KENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD----KIFN 233 (295)
Q Consensus 158 ~~~~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g----~~~~ 233 (295)
+|+|+|.|++ ++++
T Consensus 197 --------------------------------------------------------------~p~i~~~f~~~~~~~~~~ 214 (273)
T cd05475 197 --------------------------------------------------------------FKPLTLKFGKGWRTRLLE 214 (273)
T ss_pred --------------------------------------------------------------cccEEEEECCCCceeEEE
Confidence 4789999976 7999
Q ss_pred ECcccceEEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeecC
Q 022584 234 LSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 295 (295)
Q Consensus 234 i~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~~ 295 (295)
|+|++|++... ....|+..+...+. ..++.||||+.|||++|+|||++++|||||+++
T Consensus 215 l~~~~y~~~~~--~~~~Cl~~~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 215 IPPENYLIISE--KGNVCLGILNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred eCCCceEEEcC--CCCEEEEEecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 99999998643 33579877654321 234579999999999999999999999999864
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.91 E-value=9.3e-24 Score=192.06 Aligned_cols=154 Identities=48% Similarity=0.845 Sum_probs=130.8
Q ss_pred CccCCCCCCCeEEEEeecCCCCCCCcEEEECCcCCCCeeeceEEEEccc--cceEEEEEceEEECCeeecccCCCceEEe
Q 022584 1 MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK--KGYWQFELGDILIGNQSTGVCEGGCAAIV 78 (295)
Q Consensus 1 l~~qg~i~~~~Fs~~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~--~~~w~v~~~~i~v~~~~~~~~~~~~~~iv 78 (295)
|+++|+|.+++||+||.+.......|.|+|||+|++++.+++.|+|+.. ..+|.|.+.++.+++...........+++
T Consensus 128 l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~ii 207 (283)
T cd05471 128 LKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIV 207 (283)
T ss_pred HHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEE
Confidence 5688999999999999986322247999999999999999999999987 78999999999999974222345778999
Q ss_pred cccccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeec
Q 022584 79 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEK 158 (295)
Q Consensus 79 DTGtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~ 158 (295)
|||++++++|.++++.+.+++.....
T Consensus 208 DsGt~~~~lp~~~~~~l~~~~~~~~~------------------------------------------------------ 233 (283)
T cd05471 208 DSGTSLIYLPSSVYDAILKALGAAVS------------------------------------------------------ 233 (283)
T ss_pred ecCCCCEeCCHHHHHHHHHHhCCccc------------------------------------------------------
Confidence 99999999999999999999976510
Q ss_pred ccccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECccc
Q 022584 159 ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQ 238 (295)
Q Consensus 159 ~~~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~ 238 (295)
.....+..+|.....+|.|+|+|
T Consensus 234 ----------------------------------------------~~~~~~~~~~~~~~~~p~i~f~f----------- 256 (283)
T cd05471 234 ----------------------------------------------SSDGGYGVDCSPCDTLPDITFTF----------- 256 (283)
T ss_pred ----------------------------------------------ccCCcEEEeCcccCcCCCEEEEE-----------
Confidence 01233667888888999999999
Q ss_pred ceEEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeee
Q 022584 239 YILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 293 (295)
Q Consensus 239 y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~ 293 (295)
.||||++|||++|++||.+++|||||+
T Consensus 257 ----------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 479999999999999999999999985
No 23
>PLN03146 aspartyl protease family protein; Provisional
Probab=99.88 E-value=1.4e-21 Score=190.66 Aligned_cols=178 Identities=20% Similarity=0.321 Sum_probs=130.1
Q ss_pred CeEEEEeecCCC-CCCCcEEEECCcCCCCeee-ceEEEEccc---cceEEEEEceEEECCeeecccCC------CceEEe
Q 022584 10 EVFSFWLNRDPD-AEEGGEIVFGGVDPKHFKG-KHTYVPVTK---KGYWQFELGDILIGNQSTGVCEG------GCAAIV 78 (295)
Q Consensus 10 ~~Fs~~l~~~~~-~~~~G~l~~Gg~d~~~~~g-~l~~~p~~~---~~~w~v~~~~i~v~~~~~~~~~~------~~~~iv 78 (295)
++||+||.+..+ ....|.|+|||. .++.+ .+.|+|+.. ..+|.|++++|.||++.+++... ...+||
T Consensus 235 ~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~ii 312 (431)
T PLN03146 235 GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIII 312 (431)
T ss_pred CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEE
Confidence 489999976432 234799999984 44444 589999863 46899999999999998764332 236899
Q ss_pred cccccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeec
Q 022584 79 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEK 158 (295)
Q Consensus 79 DTGtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~ 158 (295)
||||+++++|+++|+.+.+++... +... +
T Consensus 313 DSGTt~t~Lp~~~y~~l~~~~~~~----------------------~~~~-~---------------------------- 341 (431)
T PLN03146 313 DSGTTLTLLPSDFYSELESAVEEA----------------------IGGE-R---------------------------- 341 (431)
T ss_pred eCCccceecCHHHHHHHHHHHHHH----------------------hccc-c----------------------------
Confidence 999999999999999988877322 0000 0
Q ss_pred ccccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEecccC---CCCCcEEEEECCEEEEEC
Q 022584 159 ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI---PTMPNVSFTIGDKIFNLS 235 (295)
Q Consensus 159 ~~~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~---~~lp~i~f~~~g~~~~i~ 235 (295)
.....+ ...+|... ..+|.|+|+|+|+++.++
T Consensus 342 --------------------------------------------~~~~~~-~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~ 376 (431)
T PLN03146 342 --------------------------------------------VSDPQG-LLSLCYSSTSDIKLPIITAHFTGADVKLQ 376 (431)
T ss_pred --------------------------------------------CCCCCC-CCCccccCCCCCCCCeEEEEECCCeeecC
Confidence 000001 12245321 368999999999999999
Q ss_pred cccceEEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEeeec
Q 022584 236 PEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 294 (295)
Q Consensus 236 p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGfa~~ 294 (295)
|++|++.... +..|+..+ . ..+.||||+.|||++|++||.+++|||||++
T Consensus 377 ~~~~~~~~~~--~~~Cl~~~-~------~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 377 PLNTFVKVSE--DLVCFAMI-P------TSSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred cceeEEEcCC--CcEEEEEe-c------CCCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 9999997543 35798533 2 1245999999999999999999999999986
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.75 E-value=7.7e-18 Score=143.26 Aligned_cols=153 Identities=22% Similarity=0.355 Sum_probs=101.9
Q ss_pred eEEEEEceEEECCeeecccCC-------CceEEecccccccccChHHHHHHHHHhcCCCcchhhhHHHHHhhHHHHHHHH
Q 022584 52 YWQFELGDILIGNQSTGVCEG-------GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLL 124 (295)
Q Consensus 52 ~w~v~~~~i~v~~~~~~~~~~-------~~~~ivDTGtt~i~lp~~~~~~l~~~i~~~~~~~~~c~~~v~~y~~~i~~~l 124 (295)
+|.|++.+|+|+++.+++... ...++|||||++++||+++|+.+.+++... +...+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~----------~~~~~------- 63 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ----------MGAPG------- 63 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH----------HHTCT-------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH----------hhhcc-------
Confidence 478999999999999986544 356999999999999999999999988332 00000
Q ss_pred HhCCChhhhhhhcccCcCCCcccccccceeeeecccccCCCCccchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCC
Q 022584 125 VSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 204 (295)
Q Consensus 125 ~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~ 204 (295)
.+.... ...-...|+..+
T Consensus 64 ---------------------------~~~~~~-----------------------------------~~~~~~~Cy~~~ 81 (161)
T PF14541_consen 64 ---------------------------VSREAP-----------------------------------PFSGFDLCYNLS 81 (161)
T ss_dssp -----------------------------CEE--------------------------------------TT-S-EEEGG
T ss_pred ---------------------------cccccc-----------------------------------cCCCCCceeecc
Confidence 000000 001123566665
Q ss_pred CCCCceEEecccCCCCCcEEEEEC-CEEEEECcccceEEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEe
Q 022584 205 NPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 283 (295)
Q Consensus 205 ~~~g~~~~~C~~~~~lp~i~f~~~-g~~~~i~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD 283 (295)
.... + .....+|+|+|+|. |++++++|++|++... .+.+|..... . ....++..|||+.+|++++++||
T Consensus 82 ~~~~----~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~--~~~~Cla~~~-~--~~~~~~~~viG~~~~~~~~v~fD 151 (161)
T PF14541_consen 82 SFGV----N-RDWAKFPTITLHFEGGADLTLPPENYFVQVS--PGVFCLAFVP-S--DADDDGVSVIGNFQQQNYHVVFD 151 (161)
T ss_dssp CS-E----E-TTEESS--EEEEETTSEEEEE-HHHHEEEEC--TTEEEESEEE-E--TSTTSSSEEE-HHHCCTEEEEEE
T ss_pred cccc----c-cccccCCeEEEEEeCCcceeeeccceeeecc--CCCEEEEEEc-c--CCCCCCcEEECHHHhcCcEEEEE
Confidence 4210 1 12357899999997 8999999999999865 3468886444 3 12345678999999999999999
Q ss_pred CCCCeEEeee
Q 022584 284 SGKLRIGFAE 293 (295)
Q Consensus 284 ~~~~rIGfa~ 293 (295)
.+++||||++
T Consensus 152 l~~~~igF~~ 161 (161)
T PF14541_consen 152 LENGRIGFAP 161 (161)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEeC
Confidence 9999999986
No 25
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=98.62 E-value=4.9e-08 Score=62.05 Aligned_cols=35 Identities=51% Similarity=0.926 Sum_probs=33.8
Q ss_pred hhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccC
Q 022584 106 SAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 140 (295)
Q Consensus 106 ~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c 140 (295)
+++|+.+|++|++.|+++|.++++|+.||+++|+|
T Consensus 1 ~~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 1 SDECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 47899999999999999999999999999999998
No 26
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=98.58 E-value=1.4e-07 Score=83.92 Aligned_cols=97 Identities=32% Similarity=0.557 Sum_probs=78.9
Q ss_pred hhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCCCcccccccceeeeecccccCCCCccchhhHHHHHHHHHHhhc-h
Q 022584 108 ECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQ-K 186 (295)
Q Consensus 108 ~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~-~ 186 (295)
+|.++||+|.+.|+..|..+..|+.||...++|+..+..... .+ .+..+-..|..|..++.+++..|.+ +
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~~~~~-----~~----~~~~~~~~C~~C~~~V~~~~~~l~d~~ 148 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAGPVSE-----VF----ASQPAAGECELCRETVTEADTKLQDKP 148 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccchhhh-----hh----hhcccccccHHHHHHHHHHHHhcccch
Confidence 999999999999999999999999999999999973331111 11 1122367899999999999999999 8
Q ss_pred hhHHHHHHHHHhhcccCCCCCCceEEecccC
Q 022584 187 QTKEKVLSYINELCDSLPNPMGESIIDCDRI 217 (295)
Q Consensus 187 ~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~ 217 (295)
+++..+.....+.|..++. |.-.|..+
T Consensus 149 ~~k~~~~~~~~~~ck~l~~----~~~~Ck~f 175 (218)
T KOG1340|consen 149 KTKGKIVSLLLKSCKSLPN----YEQKCKQF 175 (218)
T ss_pred hHHHHHHHHHHhhccCCcc----chhHHHHH
Confidence 8999999999999977775 33478764
No 27
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=98.27 E-value=9.6e-07 Score=57.22 Aligned_cols=37 Identities=27% Similarity=0.647 Sum_probs=35.7
Q ss_pred cchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCC
Q 022584 168 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 204 (295)
Q Consensus 168 ~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~ 204 (295)
.|.+|+++++++++.|++|.|+++|.+.|++.|..+|
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 6999999999999999999999999999999999886
No 28
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=97.19 E-value=0.00077 Score=48.80 Aligned_cols=38 Identities=53% Similarity=0.928 Sum_probs=36.2
Q ss_pred CcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccC
Q 022584 103 GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 140 (295)
Q Consensus 103 ~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c 140 (295)
..+...|..+++.|++.|++.+.++.+|+.+|+.+|+|
T Consensus 39 ~~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 39 KSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 37899999999999999999999999999999999988
No 29
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.0044 Score=55.41 Aligned_cols=47 Identities=30% Similarity=0.544 Sum_probs=40.9
Q ss_pred HHhcCCCcchhhhHHHHHhhHHHHHHHHHhCCChhhhhhhcccCcCC
Q 022584 97 HAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 143 (295)
Q Consensus 97 ~~i~~~~~~~~~c~~~v~~y~~~i~~~l~~~~~p~~vc~~~~~c~~~ 143 (295)
...+...-+.+.|+.+|++|++.|+.+|.+.++|..||+++|.||..
T Consensus 160 ~~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~~ 206 (218)
T KOG1340|consen 160 KSCKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPPA 206 (218)
T ss_pred hhccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCcc
Confidence 33445556778899999999999999999999999999999999953
No 30
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=95.15 E-value=0.025 Score=40.69 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=40.0
Q ss_pred cchhhHHHHHHHHHHhhchhhHHHHHHHHHhhcccCCCCCCceEEeccc
Q 022584 168 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDR 216 (295)
Q Consensus 168 ~c~~c~~~~~~~~~~l~~~~~~~~i~~~l~~~C~~~~~~~g~~~~~C~~ 216 (295)
.|.+|+.++..++..+.++.++..+.+.+.++|..+|.. +.-.|..
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~~~---~~~~C~~ 47 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLPKS---LSDQCKE 47 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCHH---HHHHHHH
Confidence 599999999999999999999999999999999999832 3336754
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.67 E-value=0.4 Score=38.81 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.2
Q ss_pred ceEEchhhhccceEEEeCCCCeEEe
Q 022584 267 LWILGDVFMGVYHTVFDSGKLRIGF 291 (295)
Q Consensus 267 ~~IlG~~fl~~~yvvFD~~~~rIGf 291 (295)
..|||..||+.+-.+.|+.+.++-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4599999999999999999998753
No 32
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.65 E-value=0.35 Score=39.13 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=30.9
Q ss_pred cccceEEEEEceEEECCeeecccCCCceEEecccccccccChHHHHHH
Q 022584 48 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 95 (295)
Q Consensus 48 ~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~~~~~l 95 (295)
...++|.++ ..|||++.. ++||||++.+.++.+..+.+
T Consensus 7 ~~~g~~~v~---~~InG~~~~-------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 7 DGDGHFYAT---GRVNGRNVR-------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred cCCCeEEEE---EEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence 455777676 778998665 89999999999999988765
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=91.13 E-value=0.77 Score=37.94 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=24.5
Q ss_pred ceEEchhhhccceEEEeCCCCeEEeee
Q 022584 267 LWILGDVFMGVYHTVFDSGKLRIGFAE 293 (295)
Q Consensus 267 ~~IlG~~fl~~~yvvFD~~~~rIGfa~ 293 (295)
..|||.++|+.+..+-|+.+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 359999999999999999999998864
No 34
>PF13650 Asp_protease_2: Aspartyl protease
Probab=85.10 E-value=1 Score=33.18 Aligned_cols=29 Identities=10% Similarity=0.322 Sum_probs=24.1
Q ss_pred EEECCeeecccCCCceEEecccccccccChHHHHHH
Q 022584 60 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 95 (295)
Q Consensus 60 i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~~~~~l 95 (295)
+.|||+++. +++|||++...++.+.++.+
T Consensus 3 v~vng~~~~-------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR-------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE-------EEEcCCCCcEEECHHHHHHc
Confidence 567777655 89999999999999988765
No 35
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=84.92 E-value=1.6 Score=32.42 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.7
Q ss_pred EEECCeeecccCCCceEEecccccccccChHHHHHH
Q 022584 60 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 95 (295)
Q Consensus 60 i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~~~~~l 95 (295)
+.+|++++. +++|||++.+.++.+..+.+
T Consensus 7 v~i~~~~~~-------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR-------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence 677877665 89999999999999876654
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=83.91 E-value=1.5 Score=33.08 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=25.3
Q ss_pred EEECCeeecccCCCceEEecccccccccChHHHHHH
Q 022584 60 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 95 (295)
Q Consensus 60 i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~~~~~l 95 (295)
+.|||+.+. +.+|||++...++.+.+..+
T Consensus 5 ~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 678888876 89999999999999988765
No 37
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=83.43 E-value=1.9 Score=38.33 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=31.8
Q ss_pred cccceEEEEEceEEECCeeecccCCCceEEecccccccccChHHHHHH
Q 022584 48 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 95 (295)
Q Consensus 48 ~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~~~~~l 95 (295)
..+++|.++ ..|||+.+. ++||||.|.+.++.+..+++
T Consensus 101 ~~~GHF~a~---~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 101 SRDGHFEAN---GRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred cCCCcEEEE---EEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 345777777 788999887 89999999999999988875
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=80.18 E-value=4.1 Score=29.57 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.2
Q ss_pred EEECCeeecccCCCceEEecccccccccChHHHHHH
Q 022584 60 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 95 (295)
Q Consensus 60 i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~~~~~l 95 (295)
+.|++..+. +++|||++-..++.+.++.+
T Consensus 13 ~~I~g~~~~-------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-------EEEeCCCcceecCHHHHHHh
Confidence 667887665 89999999999999998887
No 39
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=77.73 E-value=2.3 Score=31.94 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=24.7
Q ss_pred EEECCeeecccCCCceEEecccccccccChHHHHHH
Q 022584 60 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 95 (295)
Q Consensus 60 i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~~~~~l 95 (295)
+.|||+++. +++|||++.+.++....+.+
T Consensus 3 v~InG~~~~-------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------EEEECCCCeEEECHHHhhhc
Confidence 567888765 89999999999999988765
No 40
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=62.63 E-value=5.6 Score=30.22 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=21.3
Q ss_pred EEECCeeecccCCCceEEecccccccccChHHH
Q 022584 60 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 92 (295)
Q Consensus 60 i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~~~ 92 (295)
+.++|+.+. +++|||++...++...+
T Consensus 10 v~i~g~~i~-------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 10 VKINGKKIK-------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEETTEEEE-------EEEETTBSSEEESSGGS
T ss_pred EeECCEEEE-------EEEecCCCcceeccccc
Confidence 566777665 89999999999998754
No 41
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=52.93 E-value=14 Score=28.27 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=23.5
Q ss_pred EEECC-eeecccCCCceEEecccccccccChHHHHHHH
Q 022584 60 ILIGN-QSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 96 (295)
Q Consensus 60 i~v~~-~~~~~~~~~~~~ivDTGtt~i~lp~~~~~~l~ 96 (295)
+.++| ..+. +.+|||++...+|...++.+-
T Consensus 3 ~~i~g~~~v~-------~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGKQSVK-------FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCceeEE-------EEEecCCEEEeccHHHHhhhc
Confidence 55666 4443 899999999999999887664
No 42
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=50.80 E-value=14 Score=30.17 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=23.5
Q ss_pred EEECCeeecccCCCceEEecccccccccChHHHHHH
Q 022584 60 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 95 (295)
Q Consensus 60 i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~~~~~l 95 (295)
+.+||+.+. ++||||+..+.++.+.++++
T Consensus 29 ~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 678999876 89999999999999988774
No 43
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=44.63 E-value=15 Score=28.88 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=19.9
Q ss_pred ceEEchhhhccceEEEeCCCCeE
Q 022584 267 LWILGDVFMGVYHTVFDSGKLRI 289 (295)
Q Consensus 267 ~~IlG~~fl~~~yvvFD~~~~rI 289 (295)
..+||..||+++-.+.|+.+.++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 45999999999999999987653
No 44
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=44.10 E-value=1.2e+02 Score=23.38 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=17.9
Q ss_pred CCCceEEecccccccccChHHH
Q 022584 71 EGGCAAIVDSGTSLLAGPTPVV 92 (295)
Q Consensus 71 ~~~~~~ivDTGtt~i~lp~~~~ 92 (295)
.++...+||||+....+|....
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCCcEEEEeCCCceEeeccccc
Confidence 3567799999999999997743
No 45
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=43.57 E-value=16 Score=27.94 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.4
Q ss_pred CceEEecccccccccChH
Q 022584 73 GCAAIVDSGTSLLAGPTP 90 (295)
Q Consensus 73 ~~~~ivDTGtt~i~lp~~ 90 (295)
...+++|||++.++++..
T Consensus 11 ~~~~~~DTGSs~~Wv~~~ 28 (109)
T cd05470 11 TFNVLLDTGSSNLWVPSV 28 (109)
T ss_pred eEEEEEeCCCCCEEEeCC
Confidence 445899999999999876
No 46
>PF11938 DUF3456: TLR4 regulator and MIR-interacting MSAP; InterPro: IPR021852 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 182 to 356 amino acids in length.
Probab=29.44 E-value=73 Score=26.60 Aligned_cols=38 Identities=18% Similarity=0.566 Sum_probs=29.5
Q ss_pred cchhhHHHHHHHHHHhhc---------------------------hhhHHHHHHHHHhhcccCCC
Q 022584 168 VCSACEMAVVWVQNQLKQ---------------------------KQTKEKVLSYINELCDSLPN 205 (295)
Q Consensus 168 ~c~~c~~~~~~~~~~l~~---------------------------~~~~~~i~~~l~~~C~~~~~ 205 (295)
.|.+|..++..++..|.. ..+|..+++.|+++|.+...
T Consensus 3 ~C~~C~~l~~el~~~l~~~~~~~~v~~~~~r~d~~g~~~~~~~~y~~SE~~l~EvlE~vC~~~~~ 67 (151)
T PF11938_consen 3 KCSACRALVEELEHRLAKTDPKKFVDVGGFRLDPDGERKKKKIPYARSELRLVEVLENVCEKMKD 67 (151)
T ss_pred cchHHHHHHHHHHHHHHHhCCcCceeccccccccccccccccCccccchhHHHHHHHHHccCccc
Confidence 688999888888776532 23778899999999998753
No 47
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=28.88 E-value=38 Score=30.64 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=19.3
Q ss_pred eEEECCeeecccCCCceEEecccccccccChH
Q 022584 59 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 90 (295)
Q Consensus 59 ~i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~ 90 (295)
.|.||.-. ....+++|||++.+++|..
T Consensus 4 ~i~vGtP~-----Q~~~v~~DTGS~~~wv~~~ 30 (278)
T cd06097 4 PVKIGTPP-----QTLNLDLDTGSSDLWVFSS 30 (278)
T ss_pred eEEECCCC-----cEEEEEEeCCCCceeEeeC
Confidence 35666521 2334899999999999976
No 48
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=28.24 E-value=34 Score=27.99 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEeccccc-ccccChHHHHHHHH
Q 022584 76 AIVDSGTS-LLAGPTPVVTEINH 97 (295)
Q Consensus 76 ~ivDTGtt-~i~lp~~~~~~l~~ 97 (295)
.++|||.+ ++.+|.++++.+..
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~ 51 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGL 51 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCC
Confidence 58999999 99999999887644
No 49
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=27.94 E-value=58 Score=29.48 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=17.9
Q ss_pred eEEECCeeecccCCCceEEecccccccccC
Q 022584 59 DILIGNQSTGVCEGGCAAIVDSGTSLLAGP 88 (295)
Q Consensus 59 ~i~v~~~~~~~~~~~~~~ivDTGtt~i~lp 88 (295)
.+.||... ....+++|||++.+++|
T Consensus 6 ~i~iGtp~-----q~~~v~~DTgS~~~wv~ 30 (295)
T cd05474 6 ELSVGTPP-----QKVTVLLDTGSSDLWVP 30 (295)
T ss_pred EEEECCCC-----cEEEEEEeCCCCcceee
Confidence 36666632 23348999999999999
No 50
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=24.76 E-value=1.2e+02 Score=20.34 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.1
Q ss_pred eEEecccccccccChHHHHHH
Q 022584 75 AAIVDSGTSLLAGPTPVVTEI 95 (295)
Q Consensus 75 ~~ivDTGtt~i~lp~~~~~~l 95 (295)
.+++|||++...+..+.++..
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 389999999998888876643
No 51
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=24.43 E-value=79 Score=29.31 Aligned_cols=32 Identities=31% Similarity=0.331 Sum_probs=21.8
Q ss_pred ceEEEEEceEEECCeeecccCCCceEEecccccccccChH
Q 022584 51 GYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 90 (295)
Q Consensus 51 ~~w~v~~~~i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~ 90 (295)
..|.++ |.||... ....+++|||++.+++|..
T Consensus 9 ~~Y~~~---i~iGtP~-----Q~~~v~~DTGSs~lWv~~~ 40 (317)
T cd06098 9 AQYFGE---IGIGTPP-----QKFTVIFDTGSSNLWVPSS 40 (317)
T ss_pred CEEEEE---EEECCCC-----eEEEEEECCCccceEEecC
Confidence 345444 6666422 2344899999999999974
No 52
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=24.21 E-value=71 Score=24.32 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=19.1
Q ss_pred EEECCeeecccCCCceEEecccccccccChH
Q 022584 60 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 90 (295)
Q Consensus 60 i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~ 90 (295)
+.++|+.+. +++|||+..+.++..
T Consensus 3 ~~i~g~~~~-------~llDTGAd~Tvi~~~ 26 (87)
T cd05482 3 LYINGKLFE-------GLLDTGADVSIIAEN 26 (87)
T ss_pred EEECCEEEE-------EEEccCCCCeEEccc
Confidence 456677665 899999999998874
No 53
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=23.97 E-value=64 Score=30.03 Aligned_cols=28 Identities=39% Similarity=0.522 Sum_probs=19.7
Q ss_pred ceEEECCeeecccCCCceEEecccccccccChH
Q 022584 58 GDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 90 (295)
Q Consensus 58 ~~i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~ 90 (295)
..|.||.-. ....+++|||++.+++|..
T Consensus 6 ~~i~vGtP~-----Q~~~v~~DTGS~~~wv~~~ 33 (326)
T cd06096 6 IDIFIGNPP-----QKQSLILDTGSSSLSFPCS 33 (326)
T ss_pred EEEEecCCC-----eEEEEEEeCCCCceEEecC
Confidence 346676422 2344899999999999865
No 54
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=23.19 E-value=76 Score=25.11 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=34.1
Q ss_pred ceEEEEccccceEEEEEceEEECCeeecccCCCceEEecccccccccChHHHH
Q 022584 41 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 93 (295)
Q Consensus 41 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~~~~ 93 (295)
++..+.+.++|.|.+|+.++.=.+..+- ++-..|..+|.||+..+.
T Consensus 60 ~ietIrI~~pG~YeiNl~~Lld~~~iVv-------al~EeG~Y~I~LP~~~~~ 105 (112)
T COG3364 60 PIETIRILRPGVYEINLESLLDRDEIVV-------ALQEEGRYFIHLPSLLYG 105 (112)
T ss_pred cceEEEEecCceEEEehhhhccCCceEE-------EEccCCeEEEEChhHhcc
Confidence 5677777889999999998765444332 455789999999987654
No 55
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=21.41 E-value=82 Score=28.49 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=14.3
Q ss_pred CceEEecccccccccCh
Q 022584 73 GCAAIVDSGTSLLAGPT 89 (295)
Q Consensus 73 ~~~~ivDTGtt~i~lp~ 89 (295)
...+++|||++.+++|-
T Consensus 15 ~~~v~~DTGS~~~Wv~c 31 (273)
T cd05475 15 PYFLDIDTGSDLTWLQC 31 (273)
T ss_pred eEEEEEccCCCceEEeC
Confidence 45589999999999974
No 56
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=21.04 E-value=91 Score=28.86 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=18.8
Q ss_pred EEECCeeecccCCCceEEecccccccccChH
Q 022584 60 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 90 (295)
Q Consensus 60 i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~ 90 (295)
|.||.-. ....+++|||++.+++|..
T Consensus 11 i~iGtP~-----q~~~v~~DTGSs~~Wv~~~ 36 (325)
T cd05490 11 IGIGTPP-----QTFTVVFDTGSSNLWVPSV 36 (325)
T ss_pred EEECCCC-----cEEEEEEeCCCccEEEEcC
Confidence 5666432 2345899999999999864
No 57
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=20.38 E-value=1.5e+02 Score=26.24 Aligned_cols=49 Identities=33% Similarity=0.535 Sum_probs=30.6
Q ss_pred CCcEEEEECCEEEEECcccceEEeccccccceeeeEEEccCCCCCCCceEEchhhhccceEEEeCCCCeEEe
Q 022584 220 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGF 291 (295)
Q Consensus 220 lp~i~f~~~g~~~~i~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~yvvFD~~~~rIGf 291 (295)
.+.+.+.+++..|.+| .-| ..+ .|-..|||.+|+|.|+=..+++ .+|-|
T Consensus 67 ~~~~~i~I~~~~F~IP-~iY--q~~-------------------~g~d~IlG~NF~r~y~Pfiq~~-~~I~f 115 (201)
T PF02160_consen 67 AKNGKIQIADKIFRIP-TIY--QQE-------------------SGIDIILGNNFLRLYEPFIQTE-DRIQF 115 (201)
T ss_pred ecCceEEEccEEEecc-EEE--Eec-------------------CCCCEEecchHHHhcCCcEEEc-cEEEE
Confidence 4567777777777663 222 111 2345799999999887666664 34554
No 58
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=20.04 E-value=1e+02 Score=28.59 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=18.9
Q ss_pred EEECCeeecccCCCceEEecccccccccChH
Q 022584 60 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 90 (295)
Q Consensus 60 i~v~~~~~~~~~~~~~~ivDTGtt~i~lp~~ 90 (295)
+.||.-. ....++||||++.+++|..
T Consensus 13 i~iGtP~-----q~~~v~~DTGSs~~Wv~~~ 38 (326)
T cd05487 13 IGIGTPP-----QTFKVVFDTGSSNLWVPSS 38 (326)
T ss_pred EEECCCC-----cEEEEEEeCCccceEEccC
Confidence 6666422 2345899999999999964
No 59
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=20.02 E-value=1.9e+02 Score=21.42 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhhcccCCCCCCceEEecccCCCCCcEEEEECCEEEEECcccc
Q 022584 188 TKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQY 239 (295)
Q Consensus 188 ~~~~i~~~l~~~C~~~~~~~g~~~~~C~~~~~lp~i~f~~~g~~~~i~p~~y 239 (295)
|..+|.+++++-|.+-.. .|.-.+.--+++|.++|..+.+.-..+
T Consensus 16 s~e~i~~aIE~YC~~~~~-------~l~Fisr~~Pi~~~idg~lYev~i~~~ 60 (74)
T PF14201_consen 16 SKEEICEAIEKYCIKNGE-------SLEFISRDKPITFKIDGVLYEVEIDEE 60 (74)
T ss_pred CHHHHHHHHHHHHHHcCC-------ceEEEecCCcEEEEECCeEEEEEEEee
Confidence 788999999999997443 454445556799999998877755433
Done!