Query 022585
Match_columns 295
No_of_seqs 87 out of 89
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 99.3 9.1E-13 2E-17 109.2 1.8 80 203-293 11-93 (111)
2 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.1 2.5E-06 5.4E-11 63.7 3.3 53 234-293 1-63 (66)
3 KOG2813 Predicted molecular ch 98.0 2.2E-06 4.9E-11 83.3 2.5 105 186-293 129-263 (406)
4 COG0484 DnaJ DnaJ-class molecu 97.7 2.3E-05 5.1E-10 76.6 3.1 61 224-293 135-204 (371)
5 PRK14301 chaperone protein Dna 97.6 4E-05 8.7E-10 73.7 3.1 59 224-293 137-204 (373)
6 PRK14282 chaperone protein Dna 97.6 4.3E-05 9.4E-10 73.1 3.2 63 224-293 145-216 (369)
7 PRK14296 chaperone protein Dna 97.6 3.7E-05 8.1E-10 73.9 2.5 63 224-293 142-213 (372)
8 TIGR02349 DnaJ_bact chaperone 97.6 5.1E-05 1.1E-09 71.8 3.4 63 224-293 136-207 (354)
9 PRK10767 chaperone protein Dna 97.6 5.6E-05 1.2E-09 72.2 3.4 59 224-293 135-202 (371)
10 PRK14285 chaperone protein Dna 97.5 6E-05 1.3E-09 72.3 3.3 59 224-293 139-206 (365)
11 PRK14286 chaperone protein Dna 97.5 5.6E-05 1.2E-09 72.6 3.1 59 224-293 143-210 (372)
12 PRK14284 chaperone protein Dna 97.5 7E-05 1.5E-09 72.3 3.3 59 224-293 151-218 (391)
13 PTZ00037 DnaJ_C chaperone prot 97.5 6.4E-05 1.4E-09 73.9 3.1 63 224-293 143-215 (421)
14 PRK14279 chaperone protein Dna 97.5 7.7E-05 1.7E-09 72.3 3.2 59 224-293 166-233 (392)
15 PRK14276 chaperone protein Dna 97.5 7.5E-05 1.6E-09 71.9 2.9 63 224-293 139-210 (380)
16 PRK14278 chaperone protein Dna 97.5 7.5E-05 1.6E-09 71.9 2.9 63 224-293 132-203 (378)
17 PRK14287 chaperone protein Dna 97.5 7.1E-05 1.5E-09 71.9 2.7 63 224-293 131-202 (371)
18 PRK14297 chaperone protein Dna 97.4 8.8E-05 1.9E-09 71.3 3.2 63 224-293 141-212 (380)
19 PRK14280 chaperone protein Dna 97.4 8E-05 1.7E-09 71.6 2.8 63 224-293 136-207 (376)
20 PRK14294 chaperone protein Dna 97.4 9.7E-05 2.1E-09 70.7 3.2 59 224-293 137-204 (366)
21 PRK14295 chaperone protein Dna 97.4 8.8E-05 1.9E-09 71.8 2.9 59 224-293 159-226 (389)
22 PRK14298 chaperone protein Dna 97.4 0.00013 2.9E-09 70.3 3.8 63 224-293 134-205 (377)
23 PRK14300 chaperone protein Dna 97.4 0.00011 2.3E-09 70.6 3.1 59 224-293 138-205 (372)
24 PRK14293 chaperone protein Dna 97.4 0.00011 2.3E-09 70.6 3.0 63 224-293 136-207 (374)
25 PRK14291 chaperone protein Dna 97.3 0.00014 3.1E-09 70.0 3.2 59 224-293 149-215 (382)
26 PRK14283 chaperone protein Dna 97.3 0.00015 3.2E-09 69.8 3.0 63 224-293 139-210 (378)
27 PRK14288 chaperone protein Dna 97.3 0.00018 3.9E-09 69.2 3.3 59 224-293 133-199 (369)
28 PRK14281 chaperone protein Dna 97.3 0.00018 3.9E-09 69.8 2.9 63 224-293 156-226 (397)
29 PRK14277 chaperone protein Dna 97.2 0.00018 4E-09 69.4 2.8 63 224-293 148-219 (386)
30 PRK14289 chaperone protein Dna 97.2 0.00024 5.1E-09 68.4 3.4 63 224-293 147-218 (386)
31 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.1 0.00046 1E-08 51.5 2.8 39 229-285 13-66 (66)
32 PRK14292 chaperone protein Dna 97.0 0.00039 8.4E-09 66.5 2.8 62 225-293 133-204 (371)
33 KOG2813 Predicted molecular ch 97.0 0.0003 6.5E-09 68.9 1.7 37 229-287 232-268 (406)
34 PRK14290 chaperone protein Dna 97.0 0.00054 1.2E-08 65.6 3.2 63 224-293 142-212 (365)
35 COG1107 Archaea-specific RecJ- 96.8 0.00071 1.5E-08 70.3 2.5 25 231-255 2-31 (715)
36 PRK14300 chaperone protein Dna 96.7 0.0009 1.9E-08 64.4 2.5 40 230-288 161-211 (372)
37 PRK14284 chaperone protein Dna 96.7 0.00098 2.1E-08 64.5 2.6 39 230-287 174-223 (391)
38 PRK14296 chaperone protein Dna 96.6 0.0011 2.5E-08 63.9 2.6 38 231-287 166-218 (372)
39 PRK10767 chaperone protein Dna 96.6 0.0014 2.9E-08 62.8 2.8 38 231-287 159-207 (371)
40 COG0484 DnaJ DnaJ-class molecu 96.6 0.0014 3E-08 64.5 2.8 39 230-287 158-209 (371)
41 PRK14278 chaperone protein Dna 96.6 0.0013 2.8E-08 63.6 2.5 38 231-287 156-208 (378)
42 KOG2824 Glutaredoxin-related p 96.5 0.0025 5.5E-08 60.8 4.1 55 228-293 226-280 (281)
43 PRK14288 chaperone protein Dna 96.5 0.0017 3.6E-08 62.6 2.8 39 230-287 155-204 (369)
44 PRK14285 chaperone protein Dna 96.5 0.0016 3.4E-08 62.7 2.6 38 231-287 163-211 (365)
45 PRK14286 chaperone protein Dna 96.5 0.0016 3.4E-08 62.8 2.5 39 231-288 167-216 (372)
46 COG1107 Archaea-specific RecJ- 96.4 0.0017 3.7E-08 67.6 2.5 29 230-258 17-69 (715)
47 PRK14280 chaperone protein Dna 96.4 0.0019 4.2E-08 62.2 2.6 39 230-287 159-212 (376)
48 PRK14301 chaperone protein Dna 96.4 0.0018 4E-08 62.4 2.5 38 231-287 161-209 (373)
49 PRK14282 chaperone protein Dna 96.4 0.0023 4.9E-08 61.5 3.1 40 230-288 168-222 (369)
50 PRK14279 chaperone protein Dna 96.4 0.002 4.3E-08 62.6 2.5 39 230-287 189-238 (392)
51 cd03031 GRX_GRX_like Glutaredo 96.3 0.0044 9.6E-08 53.5 4.2 51 229-289 97-147 (147)
52 PRK14297 chaperone protein Dna 96.3 0.0026 5.7E-08 61.3 2.7 38 231-287 165-217 (380)
53 TIGR02349 DnaJ_bact chaperone 96.1 0.0037 8.1E-08 59.3 2.9 39 231-288 160-213 (354)
54 PRK14277 chaperone protein Dna 96.1 0.0035 7.6E-08 60.6 2.8 39 230-287 171-224 (386)
55 PTZ00037 DnaJ_C chaperone prot 96.1 0.0038 8.2E-08 61.7 3.0 42 230-288 165-221 (421)
56 PRK14295 chaperone protein Dna 96.1 0.0031 6.8E-08 61.2 2.4 38 231-287 183-231 (389)
57 PRK14294 chaperone protein Dna 96.1 0.0036 7.9E-08 60.0 2.7 38 231-287 161-209 (366)
58 PRK14293 chaperone protein Dna 96.1 0.0038 8.2E-08 60.1 2.7 38 231-287 160-212 (374)
59 PRK14281 chaperone protein Dna 96.1 0.0039 8.4E-08 60.6 2.6 40 230-288 178-232 (397)
60 PRK14291 chaperone protein Dna 96.0 0.0045 9.7E-08 59.8 2.9 38 230-287 172-220 (382)
61 PRK14283 chaperone protein Dna 95.9 0.0056 1.2E-07 59.0 2.9 39 230-287 162-215 (378)
62 PRK14292 chaperone protein Dna 95.9 0.0057 1.2E-07 58.6 2.8 39 230-287 156-209 (371)
63 PRK14287 chaperone protein Dna 95.8 0.0058 1.2E-07 59.0 2.5 40 230-288 154-208 (371)
64 TIGR02642 phage_xxxx uncharact 95.2 0.018 3.9E-07 52.0 3.5 27 231-257 99-130 (186)
65 PLN03165 chaperone protein dna 95.1 0.011 2.3E-07 49.6 1.6 23 231-253 75-97 (111)
66 PRK14276 chaperone protein Dna 94.8 0.023 5E-07 55.0 3.1 39 230-287 162-215 (380)
67 TIGR02642 phage_xxxx uncharact 94.6 0.019 4.2E-07 51.8 1.9 30 242-288 99-128 (186)
68 KOG0712 Molecular chaperone (D 94.6 0.033 7.2E-07 54.4 3.6 59 229-293 125-193 (337)
69 PRK14298 chaperone protein Dna 94.1 0.026 5.6E-07 54.8 1.9 39 231-288 158-211 (377)
70 PRK14289 chaperone protein Dna 93.0 0.039 8.5E-07 53.3 1.0 41 229-288 169-224 (386)
71 PRK14290 chaperone protein Dna 89.0 0.29 6.4E-06 47.1 2.6 39 230-287 164-217 (365)
72 KOG0712 Molecular chaperone (D 86.3 0.75 1.6E-05 45.2 3.7 88 183-287 110-198 (337)
73 KOG2824 Glutaredoxin-related p 77.5 1.7 3.6E-05 42.1 2.3 29 226-254 235-274 (281)
74 PF07092 DUF1356: Protein of u 72.0 1.9 4.1E-05 40.7 1.2 25 232-256 28-52 (238)
75 PF14257 DUF4349: Domain of un 70.9 7.1 0.00015 35.6 4.6 35 138-173 213-247 (262)
76 KOG0715 Molecular chaperone (D 67.0 2.1 4.6E-05 40.6 0.5 21 233-253 166-192 (288)
77 TIGR00630 uvra excinuclease AB 62.4 5.5 0.00012 43.7 2.5 20 74-93 427-446 (924)
78 KOG3088 Secretory carrier memb 61.9 38 0.00083 33.4 7.8 34 124-157 96-140 (313)
79 TIGR00630 uvra excinuclease AB 61.0 4.4 9.5E-05 44.4 1.5 12 274-285 758-769 (924)
80 PRK11720 galactose-1-phosphate 59.9 15 0.00033 35.8 4.8 35 64-98 102-138 (346)
81 PRK00349 uvrA excinuclease ABC 59.2 6.5 0.00014 43.2 2.4 20 74-93 429-448 (943)
82 PF13719 zinc_ribbon_5: zinc-r 55.3 8.5 0.00019 26.1 1.6 30 243-282 3-32 (37)
83 cd00608 GalT Galactose-1-phosp 55.1 22 0.00048 33.9 5.0 31 67-97 95-125 (329)
84 TIGR00595 priA primosomal prot 52.3 11 0.00023 38.3 2.5 45 233-284 215-262 (505)
85 PF13901 DUF4206: Domain of un 52.1 8.7 0.00019 34.6 1.7 49 231-293 142-196 (202)
86 PF07295 DUF1451: Protein of u 52.0 9.7 0.00021 33.3 1.9 27 74-100 3-29 (146)
87 PRK00349 uvrA excinuclease ABC 51.3 7.7 0.00017 42.7 1.4 12 274-285 760-771 (943)
88 TIGR02098 MJ0042_CXXC MJ0042 f 51.0 12 0.00026 24.8 1.8 32 243-284 3-34 (38)
89 PLN02643 ADP-glucose phosphory 50.9 35 0.00076 33.1 5.7 29 67-95 109-137 (336)
90 COG1198 PriA Primosomal protei 49.4 11 0.00025 40.5 2.3 47 231-284 435-484 (730)
91 PRK14873 primosome assembly pr 49.3 12 0.00026 39.6 2.5 45 232-284 384-431 (665)
92 PRK14714 DNA polymerase II lar 47.7 14 0.0003 42.4 2.6 21 231-251 667-688 (1337)
93 PRK05580 primosome assembly pr 47.5 13 0.00028 39.0 2.3 64 214-284 350-430 (679)
94 KOG2090 Metalloendopeptidase f 46.5 22 0.00048 38.3 3.7 33 69-105 299-331 (704)
95 PRK11032 hypothetical protein; 46.1 13 0.00029 33.1 1.8 33 238-285 120-152 (160)
96 PRK04023 DNA polymerase II lar 45.0 20 0.00043 40.5 3.2 47 228-294 623-671 (1121)
97 PRK00635 excinuclease ABC subu 43.9 16 0.00034 43.2 2.5 24 67-91 1326-1349(1809)
98 PF03589 Antiterm: Antitermina 42.8 9.6 0.00021 31.0 0.4 36 244-286 7-43 (95)
99 PF07092 DUF1356: Protein of u 42.3 12 0.00026 35.5 1.0 16 229-244 36-51 (238)
100 PRK00564 hypA hydrogenase nick 42.0 4.7 0.0001 33.6 -1.5 55 196-252 35-98 (117)
101 PRK00635 excinuclease ABC subu 39.9 15 0.00033 43.3 1.6 11 274-284 1629-1639(1809)
102 PF14353 CpXC: CpXC protein 39.8 28 0.00061 28.5 2.7 42 243-287 2-50 (128)
103 cd03031 GRX_GRX_like Glutaredo 39.3 23 0.00051 30.7 2.3 44 240-293 97-140 (147)
104 COG0178 UvrA Excinuclease ATPa 38.9 23 0.00051 39.3 2.6 31 244-284 732-762 (935)
105 PRK00295 hypothetical protein; 38.7 1.2E+02 0.0025 23.3 5.7 52 79-132 16-67 (68)
106 PRK05978 hypothetical protein; 37.0 17 0.00036 32.2 1.0 13 274-287 32-44 (148)
107 PF00831 Ribosomal_L29: Riboso 35.9 42 0.00092 24.7 2.9 33 77-116 2-34 (58)
108 PF08271 TF_Zn_Ribbon: TFIIB z 35.1 20 0.00043 24.7 1.0 9 244-252 2-10 (43)
109 PRK14892 putative transcriptio 34.6 29 0.00063 28.8 2.0 22 272-293 18-49 (99)
110 TIGR01010 BexC_CtrB_KpsE polys 34.3 1.5E+02 0.0032 28.2 7.0 15 154-168 336-350 (362)
111 PRK00488 pheS phenylalanyl-tRN 33.4 22 0.00047 35.2 1.3 22 232-256 261-282 (339)
112 PF13717 zinc_ribbon_4: zinc-r 32.3 31 0.00067 23.4 1.5 30 243-282 3-32 (36)
113 PRK14559 putative protein seri 31.6 34 0.00073 36.4 2.4 46 232-284 2-50 (645)
114 KOG2958 Galactose-1-phosphate 31.0 1E+02 0.0022 30.9 5.3 87 11-97 47-140 (354)
115 PF05237 MoeZ_MoeB: MoeZ/MoeB 30.2 41 0.00089 26.0 2.1 37 183-223 5-41 (84)
116 TIGR00757 RNaseEG ribonuclease 29.7 18 0.0004 36.2 0.1 16 273-288 388-403 (414)
117 PHA02683 ORF078 thioredoxin-li 28.2 53 0.0012 26.5 2.4 41 68-108 27-73 (75)
118 KOG0715 Molecular chaperone (D 27.9 33 0.00072 32.7 1.5 26 230-255 180-216 (288)
119 PF04170 NlpE: NlpE N-terminal 27.5 22 0.00047 28.0 0.1 15 240-254 2-16 (87)
120 cd02432 Nodulin-21_like_1 Nodu 27.2 35 0.00075 31.3 1.4 36 136-172 152-188 (218)
121 PF12794 MscS_TM: Mechanosensi 27.0 2.2E+02 0.0049 27.5 6.9 35 141-175 293-330 (340)
122 TIGR00757 RNaseEG ribonuclease 26.9 22 0.00047 35.7 0.1 62 178-244 327-403 (414)
123 TIGR01562 FdhE formate dehydro 26.3 73 0.0016 31.1 3.5 118 169-288 119-265 (305)
124 PF12785 VESA1_N: Variant eryt 26.3 68 0.0015 33.3 3.4 34 144-200 31-65 (462)
125 PF08792 A2L_zn_ribbon: A2L zi 26.1 41 0.00088 22.8 1.3 9 274-282 20-28 (33)
126 smart00261 FU Furin-like repea 25.9 41 0.00089 22.7 1.3 19 276-294 9-27 (46)
127 PHA03029 hypothetical protein; 24.9 51 0.0011 27.1 1.8 19 85-103 39-57 (92)
128 PRK00420 hypothetical protein; 24.8 42 0.0009 28.5 1.4 9 284-292 38-46 (112)
129 KOG1226 Integrin beta subunit 24.3 59 0.0013 35.7 2.7 63 231-293 463-528 (783)
130 PF06677 Auto_anti-p27: Sjogre 24.3 46 0.00099 23.6 1.3 9 284-292 32-40 (41)
131 PF13453 zf-TFIIB: Transcripti 23.8 67 0.0014 21.9 2.0 11 274-284 18-28 (41)
132 PHA02901 virus redox protein; 23.7 68 0.0015 25.9 2.3 41 68-108 27-73 (75)
133 KOG2706 Predicted membrane pro 23.7 79 0.0017 32.1 3.2 103 105-213 126-248 (476)
134 PRK11712 ribonuclease G; Provi 23.6 28 0.00061 35.8 0.2 16 273-288 400-415 (489)
135 TIGR03147 cyt_nit_nrfF cytochr 23.3 67 0.0015 27.8 2.4 52 108-162 64-116 (126)
136 TIGR03655 anti_R_Lar restricti 23.1 59 0.0013 23.4 1.7 13 275-287 26-38 (53)
137 PF06698 DUF1192: Protein of u 22.9 1E+02 0.0022 23.6 3.0 35 76-117 15-49 (59)
138 TIGR03007 pepcterm_ChnLen poly 22.7 5.2E+02 0.011 25.5 8.7 66 156-223 419-498 (498)
139 PF01486 K-box: K-box region; 22.2 1.6E+02 0.0035 23.3 4.2 37 75-113 47-85 (100)
140 COG0178 UvrA Excinuclease ATPa 21.7 48 0.001 37.0 1.4 23 232-254 731-765 (935)
141 PF14354 Lar_restr_allev: Rest 21.6 84 0.0018 22.5 2.3 10 274-283 28-37 (61)
142 CHL00154 rpl29 ribosomal prote 21.1 1.6E+02 0.0034 22.8 3.8 33 76-115 6-38 (67)
143 PF10146 zf-C4H2: Zinc finger- 21.0 2.7E+02 0.0058 26.1 6.0 37 86-122 71-108 (230)
144 COG5082 AIR1 Arginine methyltr 20.8 91 0.002 28.9 2.8 12 274-285 153-164 (190)
145 PHA01745 hypothetical protein 20.7 83 0.0018 31.1 2.7 38 135-173 102-139 (306)
146 PF05283 MGC-24: Multi-glycosy 20.6 41 0.0009 30.8 0.6 21 198-220 156-176 (186)
147 PRK03564 formate dehydrogenase 20.6 95 0.0021 30.4 3.1 118 169-288 122-265 (309)
148 PF14537 Cytochrom_c3_2: Cytoc 20.4 22 0.00048 25.7 -1.0 62 228-292 3-78 (80)
149 PF04102 SlyX: SlyX; InterPro 20.3 2.6E+02 0.0056 21.2 4.8 41 76-118 12-52 (69)
150 PRK04406 hypothetical protein; 20.3 3.6E+02 0.0079 21.1 5.7 34 84-119 27-60 (75)
151 PRK00306 50S ribosomal protein 20.3 1.8E+02 0.0039 21.9 3.9 32 76-114 3-34 (66)
152 COG1530 CafA Ribonucleases G a 20.0 45 0.00098 34.1 0.8 19 273-291 393-411 (487)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.28 E-value=9.1e-13 Score=109.20 Aligned_cols=80 Identities=30% Similarity=0.608 Sum_probs=65.7
Q ss_pred ceecccCcchhhhhHhhhHh--hhcc-ccccccccccccccceecCccccCCceeeeeccccccCCCCCCCCCCCceeCC
Q 022585 203 IVASFSGGAVGVISALMIVE--VNNV-KQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCS 279 (295)
Q Consensus 203 iVAsfsGGAVGVisal~vvE--iNNv-kqQekkRC~YC~GTGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCp 279 (295)
|.|+..|-||| |+.++++| ++|. |+++...|..|+|+|+..|..|+|+|.+.... +. ......+|+
T Consensus 11 ~~~~~~~~~~~-~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~------~g----~~q~~~~C~ 79 (111)
T PLN03165 11 ISVGVVSIAVG-IGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL------GG----GEKEVSKCI 79 (111)
T ss_pred hhhhhhhhhhc-cCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe------CC----cEEEEEECC
Confidence 55688888999 88877766 6666 99999999999999999999999999886432 10 013577999
Q ss_pred CCCCCcccccccCc
Q 022585 280 NCSGSGKVGWTPNE 293 (295)
Q Consensus 280 nCsGaGKVmCpTC~ 293 (295)
+|.|.|++.|+.|.
T Consensus 80 ~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 80 NCDGAGSLTCTTCQ 93 (111)
T ss_pred CCCCcceeeCCCCC
Confidence 99999999999995
No 2
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.10 E-value=2.5e-06 Score=63.70 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=36.8
Q ss_pred cccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc----cccCc
Q 022585 234 CKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG----WTPNE 293 (295)
Q Consensus 234 C~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm----CpTC~ 293 (295)
|..|+|+|. ..|..|+|+|.+..... ... .......+|+.|.|+|++. |++|.
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~--~~~-----~~~~~~~~C~~C~G~G~~i~~~~C~~C~ 63 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ--TPG-----GVFQMQQTCPKCGGTGKIIEKDPCKTCK 63 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE--SSS-----TTEEEEEE-TTTSSSSEE-TSSB-SSST
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe--CCC-----eEEEEEEECCCCcceeeEECCCCCCCCC
Confidence 889999998 78999999999876542 111 1124677899999999996 88885
No 3
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.2e-06 Score=83.30 Aligned_cols=105 Identities=26% Similarity=0.410 Sum_probs=59.2
Q ss_pred HHHHhcCccccccccCccee-cccC-------cchhh----hhHhhhHhhhcc----ccccccccccccccceecCcccc
Q 022585 186 DFIQSVHLPMQLSQVDPIVA-SFSG-------GAVGV----ISALMIVEVNNV----KQQEQKRCKYCLGTGYLACARCS 249 (295)
Q Consensus 186 dfi~s~hlp~qlsqvDpiVA-sfsG-------GAVGV----isal~vvEiNNv----kqQekkRC~YC~GTGyL~CArCs 249 (295)
.||.++. -++|..|.-| +|=| +.-|. =+.-|+++...- +-.-.+.|.-|+|.|...|..|+
T Consensus 129 tfveer~---~~~q~~PfT~~~~dG~~hg~~prlw~~d~~~~gp~mf~~~~~~~~vphs~~v~~ch~c~gRG~~vc~gc~ 205 (406)
T KOG2813|consen 129 TFVEERP---GSSQINPFTACNSDGTIHGFHPRLWGTDKCSRGPGMFSGVAHPAVVPHSMIVTFCHACLGRGAMVCHGCS 205 (406)
T ss_pred eeecccc---ccceecccccCCcCCcccccCccccccccccCCCCcccccccceeccchHhhhhhhcccCCCceeccCcC
Confidence 4554443 5677777666 2222 22220 045566654330 11234679999999999999999
Q ss_pred CCcee----eeeccccccCCCCCCCC----------CCCceeCCCCCCCcccccccCc
Q 022585 250 NTGSL----VLIEPVSTVNGGDQPLS----------APKTERCSNCSGSGKVGWTPNE 293 (295)
Q Consensus 250 GSG~i----~~~e~~S~~~Gs~~pl~----------~~~t~RCpnCsGaGKVmCpTC~ 293 (295)
|+|.- ...-.++.|.|-..+.. -.+..+|++|+|.|+..|+||.
T Consensus 206 g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~ 263 (406)
T KOG2813|consen 206 GSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCS 263 (406)
T ss_pred CCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccccccc
Confidence 99942 11123333333111100 0156678888888888888884
No 4
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2.3e-05 Score=76.63 Aligned_cols=61 Identities=20% Similarity=0.538 Sum_probs=45.0
Q ss_pred hcccccccccccccccc------ceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc---cccCc
Q 022585 224 NNVKQQEQKRCKYCLGT------GYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG---WTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GT------GyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm---CpTC~ 293 (295)
.+++-.....|..|+|+ .-..|.+|+|+|.+...... |. ....++|+.|.|+|++- |++|.
T Consensus 135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~----g~-----~~~~~~C~~C~G~G~~i~~pC~~C~ 204 (371)
T COG0484 135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT----GF-----FSFQQTCPTCNGTGKIIKDPCGKCK 204 (371)
T ss_pred eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee----eE-----EEEEEECCCCccceeECCCCCCCCC
Confidence 44555678899999999 56799999999987654322 10 12566899999999874 88884
No 5
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.59 E-value=4e-05 Score=73.67 Aligned_cols=59 Identities=22% Similarity=0.503 Sum_probs=43.1
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+.... |- .....+|+.|.|+|++ .|++|.
T Consensus 137 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~------G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (373)
T PRK14301 137 VTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ------GF-----FQIAVPCPVCRGEGRVITHPCPKCK 204 (373)
T ss_pred EEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe------ee-----EEEEEeCCCCCceeeecCCCCCCCC
Confidence 3455567889999999996 5799999999875432 11 1236688888888875 577774
No 6
>PRK14282 chaperone protein DnaJ; Provisional
Probab=97.59 E-value=4.3e-05 Score=73.13 Aligned_cols=63 Identities=25% Similarity=0.490 Sum_probs=43.6
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+........ |- .....+|+.|.|+|++ .|++|.
T Consensus 145 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 216 (369)
T PRK14282 145 IPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFF--GV-----FVSERTCERCGGTGKIPGEYCHECG 216 (369)
T ss_pred EEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccC--cc-----eEEEEECCCCCCcceeCCCCCCCCC
Confidence 4455567789999999996 47999999998754432111 10 1235589999998866 577774
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.57 E-value=3.7e-05 Score=73.93 Aligned_cols=63 Identities=21% Similarity=0.583 Sum_probs=44.1
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+....... +...+...+|+.|.|+|++ .|++|.
T Consensus 142 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g-------~~~~q~~~~C~~C~G~G~~~~~~C~~C~ 213 (372)
T PRK14296 142 KIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMG-------FFQFQQSAKCNVCNGAGKIIKNKCKNCK 213 (372)
T ss_pred EEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEecc-------ceEEEEEecCCCcCCcceeecccccCCC
Confidence 3455567789999999996 4699999999886543211 0111235689999999876 488885
No 8
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.57 E-value=5.1e-05 Score=71.80 Aligned_cols=63 Identities=24% Similarity=0.586 Sum_probs=44.7
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+.......- |- .....+|++|.|.|++ .|+.|.
T Consensus 136 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (354)
T TIGR02349 136 KEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPF--GF-----FQQQQTCPTCGGEGKIIKEPCSTCK 207 (354)
T ss_pred EEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccC--Cc-----eEEEEecCCCCCcceecCCCCCCCC
Confidence 4555667889999999994 57999999998765432110 00 1235689999999976 588885
No 9
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.55 E-value=5.6e-05 Score=72.21 Aligned_cols=59 Identities=22% Similarity=0.583 Sum_probs=42.7
Q ss_pred hcccccccccccccccccee------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGYL------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGyL------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|.. .|..|+|+|.+.... |- .....+|+.|.|.|++ .|++|.
T Consensus 135 ~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK10767 135 KEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ------GF-----FTVQQTCPTCHGRGKIIKDPCKKCH 202 (371)
T ss_pred EEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee------ce-----EEEEEeCCCCCCceeECCCCCCCCC
Confidence 44555678899999999964 799999999875432 11 1234578888888876 687775
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.53 E-value=6e-05 Score=72.28 Aligned_cols=59 Identities=27% Similarity=0.570 Sum_probs=42.8
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+... .|- .....+|+.|.|.|++ .|++|.
T Consensus 139 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~------~G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 206 (365)
T PRK14285 139 NNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQG------GGF-----FRVTTTCPKCYGNGKIISNPCKSCK 206 (365)
T ss_pred EEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEec------Cce-----eEEeeecCCCCCcccccCCCCCCCC
Confidence 4566667889999999995 579999999987531 111 1246678888888866 577774
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=97.53 E-value=5.6e-05 Score=72.63 Aligned_cols=59 Identities=22% Similarity=0.532 Sum_probs=42.0
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+.... |- .....+|+.|.|+|++ .|++|.
T Consensus 143 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~------G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (372)
T PRK14286 143 YKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ------GF-----FSVATTCPTCRGKGTVISNPCKTCG 210 (372)
T ss_pred EEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe------ce-----EEEEEeCCCCCceeeEecccCCCCC
Confidence 3455567889999999996 6899999999875432 11 1235578888888864 577774
No 12
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.50 E-value=7e-05 Score=72.34 Aligned_cols=59 Identities=27% Similarity=0.607 Sum_probs=41.6
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+.... |- .....+|+.|.|+|++ .|++|.
T Consensus 151 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~------G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (391)
T PRK14284 151 KELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR------GF-----FSMASTCPECGGEGRVITDPCSVCR 218 (391)
T ss_pred EEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe------ce-----EEEEEECCCCCCCCcccCCcCCCCC
Confidence 3455567889999999996 4699999999875322 10 1235578888888865 577774
No 13
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.49 E-value=6.4e-05 Score=73.93 Aligned_cols=63 Identities=22% Similarity=0.539 Sum_probs=44.2
Q ss_pred hccccccccccccccccce-----ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc-----ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy-----L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV-----mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|..+...... +.......+|+.|.|+|++ .|++|.
T Consensus 143 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g-------~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~ 215 (421)
T PTZ00037 143 RKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMG-------SMIHQTQSTCNSCNGQGKIIPESKKCKNCS 215 (421)
T ss_pred eEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeec-------ceeeEEEEeCCCCCCcceeccccccCCcCC
Confidence 3445557789999999996 4799999999864432211 0111246689999999986 499885
No 14
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.47 E-value=7.7e-05 Score=72.26 Aligned_cols=59 Identities=22% Similarity=0.582 Sum_probs=42.7
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.++... +. .....+|+.|.|+|++ .|++|.
T Consensus 166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~i~~~C~~C~ 233 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ------GA-----FGFSEPCTDCRGTGSIIEDPCEECK 233 (392)
T ss_pred EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe------cc-----eEEEEecCCCCceeEEeCCcCCCCC
Confidence 3455567889999999997 5699999999876432 10 0235678888888864 577774
No 15
>PRK14276 chaperone protein DnaJ; Provisional
Probab=97.46 E-value=7.5e-05 Score=71.87 Aligned_cols=63 Identities=22% Similarity=0.570 Sum_probs=42.4
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+........ |- .....+|+.|.|+|++ .|+.|.
T Consensus 139 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (380)
T PRK14276 139 KEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPL--GM-----MRRQVTCDVCHGTGKEIKEPCQTCH 210 (380)
T ss_pred EEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCC--ce-----EEEEEECCCCCCCCccccCCCCCCC
Confidence 4455567889999999996 57999999998754321110 00 0125578888888865 477774
No 16
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.46 E-value=7.5e-05 Score=71.92 Aligned_cols=63 Identities=22% Similarity=0.536 Sum_probs=42.3
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+........ |. .....+|+.|.|+|++ .|+.|.
T Consensus 132 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 203 (378)
T PRK14278 132 KQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFL--GQ-----VMTSRPCPTCRGVGEVIPDPCHECA 203 (378)
T ss_pred EEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccc--ee-----EEEEEECCCCCccceeeCCCCCCCC
Confidence 3445567889999999995 57999999998754322110 00 1134578888888865 477774
No 17
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.45 E-value=7.1e-05 Score=71.94 Aligned_cols=63 Identities=22% Similarity=0.598 Sum_probs=43.0
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+........ |- .....+|+.|.|.|++ .|++|.
T Consensus 131 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK14287 131 TEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPF--GR-----VVNRRVCHHCEGTGKIIKQKCATCG 202 (371)
T ss_pred EEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCC--ce-----EEEEEeCCCCCCCCccccccCCCCC
Confidence 4555567889999999995 56999999998754321111 00 0124578888888876 577774
No 18
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.44 E-value=8.8e-05 Score=71.29 Aligned_cols=63 Identities=29% Similarity=0.635 Sum_probs=44.1
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+........ |. .....+|+.|.|.|++ .|++|.
T Consensus 141 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (380)
T PRK14297 141 KEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPL--GS-----FVSTTTCDKCGGSGKVIEDPCNKCH 212 (380)
T ss_pred EEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCC--ce-----eEEEEeCCCCCCCceEcCCCCCCCC
Confidence 3455567889999999996 57999999998764432111 10 1236688888888866 688875
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=97.44 E-value=8e-05 Score=71.60 Aligned_cols=63 Identities=19% Similarity=0.598 Sum_probs=41.9
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+........ |- .....+|+.|.|.|++ .|++|.
T Consensus 136 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (376)
T PRK14280 136 KEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPF--GR-----VVNRQTCPHCNGTGQEIKEKCPTCH 207 (376)
T ss_pred eEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCC--ce-----EEEEEEcCCCCCCCceecCCCCCCC
Confidence 4555667889999999995 57999999998754321110 00 0134578888888865 477774
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=97.42 E-value=9.7e-05 Score=70.70 Aligned_cols=59 Identities=25% Similarity=0.628 Sum_probs=42.9
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+.... |- .....+|+.|.|.|++ .|++|.
T Consensus 137 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (366)
T PRK14294 137 KEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ------GF-----FSIRTTCPRCRGMGKVIVSPCKTCH 204 (366)
T ss_pred EEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe------ee-----EEEEeeCCCCCCcCeecCcCCCCCC
Confidence 4555667889999999996 4799999999875321 11 1235678888888866 677774
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.42 E-value=8.8e-05 Score=71.81 Aligned_cols=59 Identities=31% Similarity=0.615 Sum_probs=44.0
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
..++-.....|..|+|+|. ..|..|.|+|.+.... |. .....+|+.|.|+|++ .|++|.
T Consensus 159 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (389)
T PRK14295 159 VPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS------GG-----FSLSEPCPDCKGRGLIADDPCLVCK 226 (389)
T ss_pred EEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe------cc-----eEEEEecCCCcceeEEeccCCCCCC
Confidence 3555567889999999996 6799999999876432 11 1245689999999976 488885
No 22
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.40 E-value=0.00013 Score=70.34 Aligned_cols=63 Identities=29% Similarity=0.589 Sum_probs=42.2
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+...... ..+. .....+|+.|.|+|++ .|++|.
T Consensus 134 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~~g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (377)
T PRK14298 134 KDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRST--PLGQ-----FVTTTTCSTCHGRGQVIESPCPVCS 205 (377)
T ss_pred EEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEec--Ccee-----EEEEEeCCCCCCCCcccCCCCCCCC
Confidence 3455567789999999997 679999999987644321 1110 1245567777777754 477664
No 23
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.39 E-value=0.00011 Score=70.63 Aligned_cols=59 Identities=24% Similarity=0.610 Sum_probs=40.4
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+...- |- .....+|+.|.|.|++ .|++|.
T Consensus 138 k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (372)
T PRK14300 138 KNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ------GF-----FTIEQACHKCQGNGQIIKNPCKKCH 205 (372)
T ss_pred EEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEee------ce-----EEEEEeCCCCCccceEeCCCCCCCC
Confidence 3444457789999999995 6799999999875321 10 0134467777777755 577774
No 24
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.38 E-value=0.00011 Score=70.61 Aligned_cols=63 Identities=21% Similarity=0.576 Sum_probs=43.7
Q ss_pred hcccccccccccccccccee------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGYL------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGyL------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|+. .|..|.|+|.+........ |. .....+|+.|.|.|++ .|++|.
T Consensus 136 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (374)
T PRK14293 136 KEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPF--GS-----FTQVSECPTCNGTGQVIEDPCDACG 207 (374)
T ss_pred EEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCc--ce-----EEEEeeCCCCCcceeEeccCCCCCC
Confidence 45555678899999999974 5999999998754321100 00 1124689999999988 677774
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=97.33 E-value=0.00014 Score=69.98 Aligned_cols=59 Identities=24% Similarity=0.537 Sum_probs=41.9
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcc--cccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK--VGWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGK--VmCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+...- +- .....+|+.|.|+|. -.|++|.
T Consensus 149 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~C~~C~ 215 (382)
T PRK14291 149 VSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG------GF-----FRISQTCPTCGGEGVLREPCSKCN 215 (382)
T ss_pred EEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEec------ce-----EEEEecCCCCCCceEEccCCCCCC
Confidence 3455567889999999994 6799999999875431 10 123567888888883 3677775
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.31 E-value=0.00015 Score=69.75 Aligned_cols=63 Identities=22% Similarity=0.558 Sum_probs=43.6
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|.|+|.+.......... .....+|+.|.|.|+. .|.+|.
T Consensus 139 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~-------~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (378)
T PRK14283 139 KDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQ-------MMNVTTCPDCQGEGKIVEKPCSNCH 210 (378)
T ss_pred eEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCce-------EEEEEECCCCCccceecCCCCCCCC
Confidence 3455556789999999986 4699999999986443221110 0134588888888876 788885
No 27
>PRK14288 chaperone protein DnaJ; Provisional
Probab=97.29 E-value=0.00018 Score=69.18 Aligned_cols=59 Identities=29% Similarity=0.637 Sum_probs=41.4
Q ss_pred hccccccccccccccccce-----ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy-----L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-+....|..|+|+|. ..|..|+|+|.+.... |. ......|+.|.|+|++ .|++|.
T Consensus 133 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 199 (369)
T PRK14288 133 KTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ------GF-----MSFAQTCGACQGKGKIIKTPCQACK 199 (369)
T ss_pred EEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe------ce-----EEEEEecCCCCCCceEccccCccCC
Confidence 4455566779999999995 4699999999875432 11 1234578888888854 577774
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.26 E-value=0.00018 Score=69.79 Aligned_cols=63 Identities=25% Similarity=0.502 Sum_probs=42.4
Q ss_pred hccccccccccccccccce-----ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy-----L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|.|+|.++......... .....+|+.|.|.|++ .|++|.
T Consensus 156 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~-------~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (397)
T PRK14281 156 KTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQ-------FVNITACPTCGGEGRVVKDRCPACY 226 (397)
T ss_pred EEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccce-------EEEEEecCCCcceeeeeCCCCCCCC
Confidence 4455567789999999996 4699999999875433211110 1134578888888864 577774
No 29
>PRK14277 chaperone protein DnaJ; Provisional
Probab=97.24 E-value=0.00018 Score=69.36 Aligned_cols=63 Identities=22% Similarity=0.585 Sum_probs=41.9
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|.|+|.+........ |- .....+|+.|.|+|++ .|++|.
T Consensus 148 ~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 219 (386)
T PRK14277 148 KEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPF--GR-----IVNIRTCDRCHGEGKIITDPCNKCG 219 (386)
T ss_pred EEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccC--ce-----EEEEEECCCCCcceeeccCCCCCCC
Confidence 4455567889999999996 56999999998754321110 00 0123578888888865 477774
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.23 E-value=0.00024 Score=68.40 Aligned_cols=63 Identities=25% Similarity=0.585 Sum_probs=41.6
Q ss_pred hccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|+|+|.+........ |- ......|+.|.|.|.+ .|++|.
T Consensus 147 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~--G~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (386)
T PRK14289 147 KKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTIL--GT-----MQTQSTCPTCNGEGKIIKKKCKKCG 218 (386)
T ss_pred EEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEeccc--ce-----EEEEEecCCCCccccccCcCCCCCC
Confidence 4555567889999999996 57999999998865432111 00 0134567777777754 566664
No 31
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.05 E-value=0.00046 Score=51.53 Aligned_cols=39 Identities=36% Similarity=1.048 Sum_probs=28.0
Q ss_pred cccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCc
Q 022585 229 QEQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG 285 (295)
Q Consensus 229 QekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaG 285 (295)
.....|+.|+|+|++ .|..|.|+|.+. ...+|+.|.|.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i------------------~~~~C~~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII------------------EKDPCKTCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-------------------TSSB-SSSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE------------------CCCCCCCCCCcC
Confidence 356789999999986 699999999872 255899999986
No 32
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.03 E-value=0.00039 Score=66.54 Aligned_cols=62 Identities=21% Similarity=0.504 Sum_probs=40.3
Q ss_pred ccccccccccccccccce-------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 225 NVKQQEQKRCKYCLGTGY-------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 225 NvkqQekkRC~YC~GTGy-------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
+++-.....|..|+|+|. ..|..|.|+|.+........ |- .....+|+.|.|.|+. .|++|.
T Consensus 133 ~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~--g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (371)
T PRK14292 133 EVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIF--GV-----VETQQPCPTCRGEGQIITDPCTVCR 204 (371)
T ss_pred EEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccC--ce-----EEEeeecCCCcccceecCCCCCCCC
Confidence 344456678999999985 57999999998754321110 10 1124578888888765 577774
No 33
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0003 Score=68.87 Aligned_cols=37 Identities=32% Similarity=0.905 Sum_probs=25.5
Q ss_pred ccccccccccccceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 229 QEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 229 QekkRC~YC~GTGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
....+|..|+|+|...|.+|+|.| ..+|.+|+|+|++
T Consensus 232 gt~~~C~~C~G~G~~~C~tC~grG----------------------~k~C~TC~gtgsl 268 (406)
T KOG2813|consen 232 GTHDLCYMCHGRGIKECHTCKGRG----------------------KKPCTTCSGTGSL 268 (406)
T ss_pred CccchhhhccCCCcccCCcccCCC----------------------CcccccccCccce
Confidence 345566666666666666666665 4478888888876
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.97 E-value=0.00054 Score=65.60 Aligned_cols=63 Identities=24% Similarity=0.605 Sum_probs=43.4
Q ss_pred hccccccccccccccccce-----ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 224 NNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 224 NNvkqQekkRC~YC~GTGy-----L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.+++-.....|..|+|+|. ..|..|.|+|.+..... .|- ...+...+|+.|.|.|++ .|+.|.
T Consensus 142 ~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~----~g~---~~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (365)
T PRK14290 142 KRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRG----QGF---FRMVTVTTCRTCGGRGRIPEEKCPRCN 212 (365)
T ss_pred EEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEec----cCe---EEEEEEEeCCCCCCceeEccCCCCCCC
Confidence 4566667889999999997 57999999998754321 010 000124678888888854 688884
No 35
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.00071 Score=70.31 Aligned_cols=25 Identities=36% Similarity=0.749 Sum_probs=21.5
Q ss_pred ccccccccccceec-----CccccCCceee
Q 022585 231 QKRCKYCLGTGYLA-----CARCSNTGSLV 255 (295)
Q Consensus 231 kkRC~YC~GTGyL~-----CArCsGSG~i~ 255 (295)
.+.|+.|+|+||.. |..|.|+|...
T Consensus 2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~~ 31 (715)
T COG1107 2 IKKCPECGGKGKIVVGEEECPVCHGTGFSD 31 (715)
T ss_pred CccccccCCCceEeeeeeeccccccccccc
Confidence 36799999999875 99999999873
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.72 E-value=0.0009 Score=64.38 Aligned_cols=40 Identities=30% Similarity=0.867 Sum_probs=31.1
Q ss_pred ccccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 230 EQKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 230 ekkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
....|+.|+|+|.+ .|..|+|+|.+. ..+|+.|.|.|.++
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~ 211 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------------------KNPCKKCHGMGRYH 211 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------------------CCCCCCCCCceEEE
Confidence 35789999999976 577777777662 34699999999863
No 37
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.69 E-value=0.00098 Score=64.50 Aligned_cols=39 Identities=36% Similarity=0.953 Sum_probs=32.5
Q ss_pred cccccccccccce-----------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGy-----------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
..+.|+.|+|+|. ..|..|+|+|.+. ..+|+.|.|.|.+
T Consensus 174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 223 (391)
T PRK14284 174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-------------------TDPCSVCRGQGRI 223 (391)
T ss_pred CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-------------------CCcCCCCCCccee
Confidence 4678999999998 5799999999762 3469999999876
No 38
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.64 E-value=0.0011 Score=63.86 Aligned_cols=38 Identities=37% Similarity=0.986 Sum_probs=31.2
Q ss_pred cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
...|..|+|+|.+ .|..|.|+|.+. ...|+.|.|.|.+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 218 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-------------------KNKCKNCKGKGKY 218 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-------------------cccccCCCCceEE
Confidence 5679999999965 799999999773 3469999998865
No 39
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.60 E-value=0.0014 Score=62.85 Aligned_cols=38 Identities=34% Similarity=1.023 Sum_probs=31.1
Q ss_pred cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
...|+.|+|+|.+ .|..|+|+|.+. ..+|+.|.|.|.+
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 207 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------------------KDPCKKCHGQGRV 207 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------------------CCCCCCCCCCceE
Confidence 4689999999976 499999999762 3469999998876
No 40
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0014 Score=64.52 Aligned_cols=39 Identities=36% Similarity=1.026 Sum_probs=32.2
Q ss_pred cccccccccccce-------------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGY-------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGy-------------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
..+.|+.|+|+|. ..|.+|+|+|.+. +.+|+.|.|.|.+
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-------------------~~pC~~C~G~G~v 209 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-------------------KDPCGKCKGKGRV 209 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-------------------CCCCCCCCCCCeE
Confidence 6789999999994 5699999999772 4588888888875
No 41
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.58 E-value=0.0013 Score=63.55 Aligned_cols=38 Identities=32% Similarity=0.920 Sum_probs=31.0
Q ss_pred ccccccccccce---------------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 231 kkRC~YC~GTGy---------------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
...|..|+|+|. ..|..|+|+|.+. ..+|+.|.|.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 208 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------------------PDPCHECAGDGRV 208 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------------------CCCCCCCCCceeE
Confidence 468999999995 4699999999763 2369999999876
No 42
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0025 Score=60.82 Aligned_cols=55 Identities=20% Similarity=0.428 Sum_probs=45.4
Q ss_pred cccccccccccccceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccccccCc
Q 022585 228 QQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVGWTPNE 293 (295)
Q Consensus 228 qQekkRC~YC~GTGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVmCpTC~ 293 (295)
+++.-.|..|.|-++++|..|+||-++... ++.+ ....||+.|.=-|-|.||.|-
T Consensus 226 ~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~---~~~~--------~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 226 CEGGGVCESCGGARFLPCSNCHGSCKVHEE---EEDD--------GGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCCCCcCCCcCCcceEecCCCCCceeeeee---ccCC--------CcEEECcccCCCCceeCCccC
Confidence 556689999999999999999999887532 2222 368899999999999999994
No 43
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.51 E-value=0.0017 Score=62.58 Aligned_cols=39 Identities=28% Similarity=0.852 Sum_probs=31.6
Q ss_pred ccccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
....|+.|+|+|.+ .|..|.|+|.+. ..+|+.|.|.|.+
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 204 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------------------KTPCQACKGKTYI 204 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------------------cccCccCCCcceE
Confidence 35789999999975 599999999762 3469999998865
No 44
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.50 E-value=0.0016 Score=62.66 Aligned_cols=38 Identities=29% Similarity=0.980 Sum_probs=30.6
Q ss_pred cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
...|..|+|+|.+ .|..|.|+|.+. ..+|+.|.|.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 211 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------------------SNPCKSCKGKGSL 211 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc-------------------CCCCCCCCCCCEE
Confidence 5689999999965 788888888662 3479999999866
No 45
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.48 E-value=0.0016 Score=62.80 Aligned_cols=39 Identities=28% Similarity=0.873 Sum_probs=31.3
Q ss_pred cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
...|..|+|+|.+ .|..|.|+|.+. ..+|+.|.|.|.+.
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~~~ 216 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-------------------SNPCKTCGGQGLQE 216 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-------------------cccCCCCCCCcEEe
Confidence 4689999999965 699999999773 33688999888764
No 46
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.0017 Score=67.61 Aligned_cols=29 Identities=28% Similarity=0.985 Sum_probs=20.2
Q ss_pred cccccccccccce------------------------ecCccccCCceeeeec
Q 022585 230 EQKRCKYCLGTGY------------------------LACARCSNTGSLVLIE 258 (295)
Q Consensus 230 ekkRC~YC~GTGy------------------------L~CArCsGSG~i~~~e 258 (295)
+.+-|+-|+|+|+ ++|..|.|+|.+++.+
T Consensus 17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~ 69 (715)
T COG1107 17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYD 69 (715)
T ss_pred eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEe
Confidence 4556888888774 3678888888775433
No 47
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.42 E-value=0.0019 Score=62.20 Aligned_cols=39 Identities=38% Similarity=1.020 Sum_probs=30.8
Q ss_pred ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
....|..|+|+|.+ .|..|+|+|.+. ..+|+.|.|.|.+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 212 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------------------KEKCPTCHGKGKV 212 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------------------cCCCCCCCCceEE
Confidence 35689999999964 699999999762 3469999998876
No 48
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.42 E-value=0.0018 Score=62.39 Aligned_cols=38 Identities=37% Similarity=0.970 Sum_probs=30.4
Q ss_pred cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
...|+.|+|+|.+ .|..|+|+|.+. ..+|+.|.|.|.+
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 209 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-------------------THPCPKCKGSGIV 209 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-------------------CCCCCCCCCCcee
Confidence 4679999999964 699999999762 3469999998865
No 49
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.42 E-value=0.0023 Score=61.49 Aligned_cols=40 Identities=40% Similarity=0.958 Sum_probs=31.4
Q ss_pred ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
..+.|+.|+|+|.+ .|..|+|+|.+. ..+|+.|.|.|.+.
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~ 222 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-------------------GEYCHECGGSGRIR 222 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-------------------CCCCCCCCCceeEE
Confidence 35789999999975 588888888762 34699999988664
No 50
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.39 E-value=0.002 Score=62.61 Aligned_cols=39 Identities=36% Similarity=0.982 Sum_probs=31.7
Q ss_pred ccccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
....|..|+|+|.+ .|..|.|+|.+. ..+|..|.|.|.+
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-------------------~~~C~~C~G~g~v 238 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-------------------EDPCEECKGTGVT 238 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-------------------CCcCCCCCCCeEE
Confidence 35789999999975 699999999873 3469999998865
No 51
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.35 E-value=0.0044 Score=53.48 Aligned_cols=51 Identities=22% Similarity=0.520 Sum_probs=40.4
Q ss_pred ccccccccccccceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccccc
Q 022585 229 QEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVGW 289 (295)
Q Consensus 229 QekkRC~YC~GTGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVmC 289 (295)
+....|..|.|.++++|..|+||-++...+.. . .....||+.|.=-|-+.|
T Consensus 97 ~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~--~--------~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 97 AGGGVCEGCGGARFVPCSECNGSCKVFAENAT--A--------AGGFLRCPECNENGLVRC 147 (147)
T ss_pred cCCCCCCCCCCcCeEECCCCCCcceEEeccCc--c--------cccEEECCCCCccccccC
Confidence 34567999999999999999999988643311 0 135789999999999888
No 52
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.28 E-value=0.0026 Score=61.26 Aligned_cols=38 Identities=39% Similarity=1.074 Sum_probs=29.6
Q ss_pred cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
...|+.|+|+|++ .|..|.|+|.+. ..+|+.|.|.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 217 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-------------------EDPCNKCHGKGKV 217 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-------------------CCCCCCCCCCeEE
Confidence 5679999999965 588888888662 3469999988854
No 53
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.15 E-value=0.0037 Score=59.31 Aligned_cols=39 Identities=41% Similarity=0.984 Sum_probs=30.9
Q ss_pred ccccccccccce---------------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 231 kkRC~YC~GTGy---------------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
...|..|+|+|. ..|..|.|+|.+. ...|+.|.|.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------------------KEPCSTCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------------------CCCCCCCCCCcEec
Confidence 678999999995 4699999999763 23699999988764
No 54
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.14 E-value=0.0035 Score=60.64 Aligned_cols=39 Identities=36% Similarity=1.066 Sum_probs=30.9
Q ss_pred ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
....|..|+|+|.+ .|..|.|+|... ..+|+.|.|.|.+
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 224 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------------------TDPCNKCGGTGRI 224 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-------------------cCCCCCCCCCcEE
Confidence 35789999999975 599999999762 3368888888865
No 55
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.14 E-value=0.0038 Score=61.68 Aligned_cols=42 Identities=33% Similarity=0.858 Sum_probs=32.9
Q ss_pred cccccccccccce---------------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 230 EQKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 230 ekkRC~YC~GTGy---------------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
....|+.|+|+|. ..|..|+|+|.+.. ...+|+.|.|.|.+.
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~-----------------~~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP-----------------ESKKCKNCSGKGVKK 221 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc-----------------ccccCCcCCCcceee
Confidence 3567999999995 37999999998732 245799999998764
No 56
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.13 E-value=0.0031 Score=61.21 Aligned_cols=38 Identities=34% Similarity=0.876 Sum_probs=30.9
Q ss_pred ccccccccccce-----------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 231 QKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 231 kkRC~YC~GTGy-----------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
...|..|+|+|. ..|..|.|+|.+. ..+|+.|.|.|.+
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~~ 231 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-------------------DDPCLVCKGSGRA 231 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-------------------ccCCCCCCCCceE
Confidence 578999999996 4799999999763 3468889888865
No 57
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.11 E-value=0.0036 Score=60.05 Aligned_cols=38 Identities=34% Similarity=0.989 Sum_probs=30.4
Q ss_pred cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
...|..|+|+|.+ .|..|.|+|.+. ...|+.|.|.|.+
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 209 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------------------VSPCKTCHGQGRV 209 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------------------CcCCCCCCCceEe
Confidence 5689999999964 699999999762 3368999988865
No 58
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.08 E-value=0.0038 Score=60.10 Aligned_cols=38 Identities=32% Similarity=0.914 Sum_probs=29.5
Q ss_pred cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
...|+.|+|+|.+ .|..|.|.|.+. ..+|..|.|.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-------------------EDPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-------------------ccCCCCCCCCccc
Confidence 4679999999964 599999999762 3368888888765
No 59
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.06 E-value=0.0039 Score=60.64 Aligned_cols=40 Identities=35% Similarity=0.904 Sum_probs=31.6
Q ss_pred ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
....|..|+|+|.+ .|..|.|+|.+. ..+|+.|.|.|.+.
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~ 232 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------------------KDRCPACYGEGIKQ 232 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------------------CCCCCCCCCCccEe
Confidence 35789999999953 699999999773 33699999988763
No 60
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.0045 Score=59.84 Aligned_cols=38 Identities=42% Similarity=0.970 Sum_probs=29.8
Q ss_pred ccccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
....|+.|+|+|.+ .|..|.|+|.+ ...|+.|.|.|.+
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--------------------~~~C~~C~G~g~v 220 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL--------------------REPCSKCNGRGLV 220 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCCCceEE--------------------ccCCCCCCCCceE
Confidence 36789999999965 79999999943 2368888888865
No 61
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.90 E-value=0.0056 Score=59.01 Aligned_cols=39 Identities=46% Similarity=1.008 Sum_probs=29.0
Q ss_pred ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
....|..|+|+|.+ .|..|.|+|... ..+|.+|.|.|.+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 215 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------------------EKPCSNCHGKGVV 215 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------------------CCCCCCCCCceee
Confidence 45779999999875 488888888662 2358888887765
No 62
>PRK14292 chaperone protein DnaJ; Provisional
Probab=95.87 E-value=0.0057 Score=58.64 Aligned_cols=39 Identities=33% Similarity=0.959 Sum_probs=31.4
Q ss_pred ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
....|..|+|+|+. .|..|+|+|... ..+|+.|.|.|.+
T Consensus 156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 209 (371)
T PRK14292 156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------------TDPCTVCRGRGRT 209 (371)
T ss_pred CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------------CCCCCCCCCceEE
Confidence 36789999999975 499999999762 3479999998866
No 63
>PRK14287 chaperone protein DnaJ; Provisional
Probab=95.80 E-value=0.0058 Score=58.97 Aligned_cols=40 Identities=38% Similarity=1.020 Sum_probs=31.2
Q ss_pred ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
....|+.|+|+|++ .|..|.|+|.+. ..+|+.|.|.|.+.
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~ 208 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-------------------KQKCATCGGKGKVR 208 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-------------------cccCCCCCCeeEEe
Confidence 35789999999964 699999998762 33699999888764
No 64
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.24 E-value=0.018 Score=51.99 Aligned_cols=27 Identities=33% Similarity=0.824 Sum_probs=23.0
Q ss_pred ccccccccccceec-----CccccCCceeeee
Q 022585 231 QKRCKYCLGTGYLA-----CARCSNTGSLVLI 257 (295)
Q Consensus 231 kkRC~YC~GTGyL~-----CArCsGSG~i~~~ 257 (295)
...|+.|+|+|++. |..|+|+|++...
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 78899999999875 9999999988544
No 65
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=95.13 E-value=0.011 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.921 Sum_probs=10.4
Q ss_pred ccccccccccceecCccccCCce
Q 022585 231 QKRCKYCLGTGYLACARCSNTGS 253 (295)
Q Consensus 231 kkRC~YC~GTGyL~CArCsGSG~ 253 (295)
...|+.|+|+|+..|..|.|+|.
T Consensus 75 ~~~C~~C~G~Gk~~C~~C~G~G~ 97 (111)
T PLN03165 75 VSKCINCDGAGSLTCTTCQGSGI 97 (111)
T ss_pred EEECCCCCCcceeeCCCCCCCEE
Confidence 34444444444444444444443
No 66
>PRK14276 chaperone protein DnaJ; Provisional
Probab=94.79 E-value=0.023 Score=54.99 Aligned_cols=39 Identities=33% Similarity=0.881 Sum_probs=29.4
Q ss_pred ccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
....|+.|+|+|.+ +|..|.|+|.+. +.+|+.|.|.|.+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~~ 215 (380)
T PRK14276 162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-------------------KEPCQTCHGTGHE 215 (380)
T ss_pred CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-------------------cCCCCCCCCceEE
Confidence 35689999999975 477777777552 3469999998875
No 67
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=94.59 E-value=0.019 Score=51.80 Aligned_cols=30 Identities=30% Similarity=0.840 Sum_probs=25.0
Q ss_pred eecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 242 yL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
...|.+|+|+|.+.. ...+|+.|.|+|++.
T Consensus 99 ~~~C~~C~G~G~~i~-----------------~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQR-----------------RQRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEec-----------------CCCCCCCCCCccEEe
Confidence 889999999998742 236899999999874
No 68
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.033 Score=54.44 Aligned_cols=59 Identities=20% Similarity=0.475 Sum_probs=41.0
Q ss_pred ccccccccccccce----e-cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc-----ccccCc
Q 022585 229 QEQKRCKYCLGTGY----L-ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----GWTPNE 293 (295)
Q Consensus 229 QekkRC~YC~GTGy----L-~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV-----mCpTC~ 293 (295)
+...-|.-|+|.|- . .|..|.|+|..+........ +.-....+|..|.|+|.. .|++|.
T Consensus 125 ~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg------~~qs~q~~C~~C~G~G~~~~~kd~C~~C~ 193 (337)
T KOG0712|consen 125 SRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPG------MVQSPQLVCDSCNGSGETISLKDRCKTCS 193 (337)
T ss_pred ccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEecccc------ccccceeEeccCCCccccccccccCcccc
Confidence 46678999999653 2 49999999987554322210 111356789999999998 999995
No 69
>PRK14298 chaperone protein DnaJ; Provisional
Probab=94.14 E-value=0.026 Score=54.75 Aligned_cols=39 Identities=44% Similarity=1.014 Sum_probs=32.3
Q ss_pred cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
...|+.|+|+|.+ .|..|.|+|.+. ..+|+.|.|.|.+.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~ 211 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------------------ESPCPVCSGTGKVR 211 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------------------CCCCCCCCCccEEE
Confidence 4789999999964 699999999762 34699999999874
No 70
>PRK14289 chaperone protein DnaJ; Provisional
Probab=92.98 E-value=0.039 Score=53.34 Aligned_cols=41 Identities=29% Similarity=0.899 Sum_probs=33.2
Q ss_pred cccccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 229 QEQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 229 QekkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
.....|+.|+|+|.+ .|..|.|+|.+. ..+|+.|.|.|.+.
T Consensus 169 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v~ 224 (386)
T PRK14289 169 NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------------------KKKCKKCGGEGIVY 224 (386)
T ss_pred CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------------------CcCCCCCCCCcEEe
Confidence 346789999999986 699999999662 34799999999763
No 71
>PRK14290 chaperone protein DnaJ; Provisional
Probab=89.00 E-value=0.29 Score=47.14 Aligned_cols=39 Identities=36% Similarity=0.926 Sum_probs=30.9
Q ss_pred cccccccccccce---------------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 230 EQKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 230 ekkRC~YC~GTGy---------------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
....|+.|+|+|. ..|..|.|.|.+. ..+|+.|.|.|.+
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 217 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------------EEKCPRCNGTGTV 217 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------------cCCCCCCCCceeE
Confidence 3568999999995 4799999999762 3478899888865
No 72
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.34 E-value=0.75 Score=45.21 Aligned_cols=88 Identities=23% Similarity=0.411 Sum_probs=58.4
Q ss_pred hhHHHHHhcCccccccccCcceecccCcchhhhhHhhhHhhhccccccccccccccccceecCccccCCceeeee-cccc
Q 022585 183 SYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLI-EPVS 261 (295)
Q Consensus 183 sy~dfi~s~hlp~qlsqvDpiVAsfsGGAVGVisal~vvEiNNvkqQekkRC~YC~GTGyL~CArCsGSG~i~~~-e~~S 261 (295)
+++|+....+.|+.|+. +.+-+-+-|.=| +.-....|..|.|+|-..=.++.|.|..... ..|.
T Consensus 110 ~Le~~y~G~s~kl~l~~--~~iCs~C~GsGg-------------ksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~ 174 (337)
T KOG0712|consen 110 TLEELYMGKSKKLFLSR--NFICSKCSGSGG-------------KSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCD 174 (337)
T ss_pred EHHHhhcCCccceeccc--CccCCcCCCCCC-------------CCCCCCCCCCCCCCCceeEEEeccccccccceeEec
Confidence 58999999999998875 344444444444 2224457888888888777777777765433 4566
Q ss_pred ccCCCCCCCCCCCceeCCCCCCCccc
Q 022585 262 TVNGGDQPLSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 262 ~~~Gs~~pl~~~~t~RCpnCsGaGKV 287 (295)
.|.|+..+ +....+|+.|.|++.+
T Consensus 175 ~C~G~G~~--~~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 175 SCNGSGET--ISLKDRCKTCSGAKVV 198 (337)
T ss_pred cCCCcccc--ccccccCcccccchhh
Confidence 66665333 2345688888888754
No 73
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.48 E-value=1.7 Score=42.09 Aligned_cols=29 Identities=28% Similarity=0.691 Sum_probs=20.3
Q ss_pred ccccccccccccccc-----------ceecCccccCCcee
Q 022585 226 VKQQEQKRCKYCLGT-----------GYLACARCSNTGSL 254 (295)
Q Consensus 226 vkqQekkRC~YC~GT-----------GyL~CArCsGSG~i 254 (295)
+..-+...|..|||+ +.++|..|+=.|.+
T Consensus 235 CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 235 CGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV 274 (281)
T ss_pred cCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence 456688999999995 45566666666533
No 74
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=72.02 E-value=1.9 Score=40.72 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=19.7
Q ss_pred cccccccccceecCccccCCceeee
Q 022585 232 KRCKYCLGTGYLACARCSNTGSLVL 256 (295)
Q Consensus 232 kRC~YC~GTGyL~CArCsGSG~i~~ 256 (295)
..|..-.|.+.+.|++|+|+|++..
T Consensus 28 ~py~e~~g~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 28 FPYVEFTGRDSVTCPTCQGTGRIPR 52 (238)
T ss_pred CccccccCCCCCcCCCCcCCccCCc
Confidence 3444567789999999999999844
No 75
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=70.91 E-value=7.1 Score=35.60 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=16.4
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhccccccch
Q 022585 138 PFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSL 173 (295)
Q Consensus 138 pflp~lt~~~l~~~y~~~~~~i~~ii~fggl~aP~l 173 (295)
+|..++. +.++........++.+++.|-..+.|.+
T Consensus 213 ~~~~~~~-~al~~~~~~~~~~~~~lv~~l~~l~p~~ 247 (262)
T PF14257_consen 213 SFGSRFR-DALKNGWNALVSFLSGLVVFLVGLLPWL 247 (262)
T ss_pred CcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4655554 3355544444444444444444444443
No 76
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=66.99 E-value=2.1 Score=40.61 Aligned_cols=21 Identities=38% Similarity=1.023 Sum_probs=11.5
Q ss_pred ccccccccc------eecCccccCCce
Q 022585 233 RCKYCLGTG------YLACARCSNTGS 253 (295)
Q Consensus 233 RC~YC~GTG------yL~CArCsGSG~ 253 (295)
.|..|.|.| ...|.+|+|.|.
T Consensus 166 ~~~t~~~~~~~~~~~~~~~~~~~~~~~ 192 (288)
T KOG0715|consen 166 DCETCFGSGAEEGAKRESCKTCSGRGL 192 (288)
T ss_pred ccccccCcCcccccccccchhhhCccc
Confidence 556665544 234666666663
No 77
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.37 E-value=5.5 Score=43.69 Aligned_cols=20 Identities=15% Similarity=0.499 Sum_probs=15.1
Q ss_pred hhHHHHHhhhHHHHHHHHHh
Q 022585 74 ETVQDFAKMELQEIHDNIRS 93 (295)
Q Consensus 74 ~tv~dfa~mq~~ei~~ni~s 93 (295)
-++.|+.+|.++|+.+=+++
T Consensus 427 ~~I~e~~~~~v~~~~~~~~~ 446 (924)
T TIGR00630 427 KSIADVSELSIREAHEFFNQ 446 (924)
T ss_pred EEHHHHhcCCHHHHHHHHHh
Confidence 46889999998887765544
No 78
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.87 E-value=38 Score=33.44 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=23.9
Q ss_pred ccccCCCCCCCCCCCCCCcc-----------chhHHHHHHHHHHH
Q 022585 124 EEQDNELPSFPSFIPFLPPL-----------SAANLKVYYATCFS 157 (295)
Q Consensus 124 ~~~~~e~~~~~s~ipflp~l-----------t~~~l~~~y~~~~~ 157 (295)
..++|.-|-.||.||+.|=. =.|+.|..|.+|..
T Consensus 96 ~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~ 140 (313)
T KOG3088|consen 96 VIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMG 140 (313)
T ss_pred cccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHH
Confidence 45777778899999999853 24677775555544
No 79
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.03 E-value=4.4 Score=44.42 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=8.6
Q ss_pred CceeCCCCCCCc
Q 022585 274 KTERCSNCSGSG 285 (295)
Q Consensus 274 ~t~RCpnCsGaG 285 (295)
...+|+.|.|..
T Consensus 758 ~~~~C~~C~G~R 769 (924)
T TIGR00630 758 VYVPCEVCKGKR 769 (924)
T ss_pred cccCCCCcCCce
Confidence 466788888764
No 80
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=59.89 E-value=15 Score=35.81 Aligned_cols=35 Identities=11% Similarity=0.327 Sum_probs=28.4
Q ss_pred CCcce--EeeCchhHHHHHhhhHHHHHHHHHhhhhhh
Q 022585 64 AAGFC--IIEGPETVQDFAKMELQEIHDNIRSRRNKI 98 (295)
Q Consensus 64 ~~~fc--iie~~~tv~dfa~mq~~ei~~ni~srrnki 98 (295)
.-|+| |||+|+-..+|+.|..++|++=|..=|++.
T Consensus 102 ~~G~~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~ 138 (346)
T PRK11720 102 ARGTSRVICFSPDHSKTLPELSVAALREVVDTWQEQT 138 (346)
T ss_pred cceEEEEEEECCCcCCChhHCCHHHHHHHHHHHHHHH
Confidence 34444 999999999999999999999777666553
No 81
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=59.21 E-value=6.5 Score=43.23 Aligned_cols=20 Identities=5% Similarity=0.277 Sum_probs=13.4
Q ss_pred hhHHHHHhhhHHHHHHHHHh
Q 022585 74 ETVQDFAKMELQEIHDNIRS 93 (295)
Q Consensus 74 ~tv~dfa~mq~~ei~~ni~s 93 (295)
-++.||..|.++|+.+=++.
T Consensus 429 ~~i~~~~~~~v~~~~~~~~~ 448 (943)
T PRK00349 429 KNIGEVSELSIGEALEFFEN 448 (943)
T ss_pred EEHHHHhcCcHHHHHHHHHh
Confidence 45677888887777654443
No 82
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=55.30 E-value=8.5 Score=26.12 Aligned_cols=30 Identities=17% Similarity=0.507 Sum_probs=18.1
Q ss_pred ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCC
Q 022585 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCS 282 (295)
Q Consensus 243 L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCs 282 (295)
+.|+.|+..-.+... .... .....+|+.|+
T Consensus 3 i~CP~C~~~f~v~~~-~l~~---------~~~~vrC~~C~ 32 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDD-KLPA---------GGRKVRCPKCG 32 (37)
T ss_pred EECCCCCceEEcCHH-Hccc---------CCcEEECCCCC
Confidence 568888877766432 1111 13577888886
No 83
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=55.07 E-value=22 Score=33.92 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=25.4
Q ss_pred ceEeeCchhHHHHHhhhHHHHHHHHHhhhhh
Q 022585 67 FCIIEGPETVQDFAKMELQEIHDNIRSRRNK 97 (295)
Q Consensus 67 fciie~~~tv~dfa~mq~~ei~~ni~srrnk 97 (295)
.-|||+|+-..+|++|+.++|.+=|..=+++
T Consensus 95 eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r 125 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEIREVVEAWAER 125 (329)
T ss_pred EEEEECCcccCChhhCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999966644433
No 84
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.26 E-value=11 Score=38.28 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=25.2
Q ss_pred ccccccccceecCccccCCceeeee---ccccccCCCCCCCCCCCceeCCCCCCC
Q 022585 233 RCKYCLGTGYLACARCSNTGSLVLI---EPVSTVNGGDQPLSAPKTERCSNCSGS 284 (295)
Q Consensus 233 RC~YC~GTGyL~CArCsGSG~i~~~---e~~S~~~Gs~~pl~~~~t~RCpnCsGa 284 (295)
.|..|.-. ..|.+|+++=++-.. -.|..|+-. .+....||+|.+.
T Consensus 215 ~C~~Cg~~--~~C~~C~~~l~~h~~~~~l~Ch~Cg~~-----~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 215 LCRSCGYI--LCCPNCDVSLTYHKKEGKLRCHYCGYQ-----EPIPKTCPQCGSE 262 (505)
T ss_pred EhhhCcCc--cCCCCCCCceEEecCCCeEEcCCCcCc-----CCCCCCCCCCCCC
Confidence 56666543 468888876554222 345555432 1224478888764
No 85
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=52.09 E-value=8.7 Score=34.56 Aligned_cols=49 Identities=22% Similarity=0.568 Sum_probs=34.0
Q ss_pred ccccccccccceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCC------cccccccCc
Q 022585 231 QKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGS------GKVGWTPNE 293 (295)
Q Consensus 231 kkRC~YC~GTGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGa------GKVmCpTC~ 293 (295)
...|.-|.++|. .|.-|+.+..+ =| -...++.+|+.|+-. -+..||.|+
T Consensus 142 V~~C~lC~~kGf-iCe~C~~~~~I---fP----------F~~~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 142 VYSCELCQQKGF-ICEICNSDDII---FP----------FQIDTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHHhHHHHhCCC-CCccCCCCCCC---CC----------CCCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence 448999999996 89999988544 11 112367888888642 135688886
No 86
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=51.96 E-value=9.7 Score=33.34 Aligned_cols=27 Identities=7% Similarity=0.282 Sum_probs=19.1
Q ss_pred hhHHHHHhhhHHHHHHHHHhhhhhhhH
Q 022585 74 ETVQDFAKMELQEIHDNIRSRRNKIFL 100 (295)
Q Consensus 74 ~tv~dfa~mq~~ei~~ni~srrnkifl 100 (295)
+.+.|..+.+.++|++.|.+-|.+.--
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~ 29 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVA 29 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 456777777888888877776665543
No 87
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=51.27 E-value=7.7 Score=42.66 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=8.5
Q ss_pred CceeCCCCCCCc
Q 022585 274 KTERCSNCSGSG 285 (295)
Q Consensus 274 ~t~RCpnCsGaG 285 (295)
....|++|.|+.
T Consensus 760 ~~~~C~~C~G~R 771 (943)
T PRK00349 760 VYVPCDVCKGKR 771 (943)
T ss_pred ccccCccccCcc
Confidence 456788888764
No 88
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=50.96 E-value=12 Score=24.81 Aligned_cols=32 Identities=19% Similarity=0.490 Sum_probs=17.7
Q ss_pred ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCC
Q 022585 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGS 284 (295)
Q Consensus 243 L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGa 284 (295)
+.|++|...=.+... .... .....+||+|+..
T Consensus 3 ~~CP~C~~~~~v~~~-~~~~---------~~~~v~C~~C~~~ 34 (38)
T TIGR02098 3 IQCPNCKTSFRVVDS-QLGA---------NGGKVRCGKCGHV 34 (38)
T ss_pred EECCCCCCEEEeCHH-HcCC---------CCCEEECCCCCCE
Confidence 567777776555321 1111 1246789999753
No 89
>PLN02643 ADP-glucose phosphorylase
Probab=50.94 E-value=35 Score=33.07 Aligned_cols=29 Identities=14% Similarity=0.301 Sum_probs=24.6
Q ss_pred ceEeeCchhHHHHHhhhHHHHHHHHHhhh
Q 022585 67 FCIIEGPETVQDFAKMELQEIHDNIRSRR 95 (295)
Q Consensus 67 fciie~~~tv~dfa~mq~~ei~~ni~srr 95 (295)
.-|||+|+-..+|++|..++|.+=|..=|
T Consensus 109 eVii~sp~H~~~l~~~~~~~i~~v~~~~~ 137 (336)
T PLN02643 109 DVVIETPVHSVQLSDLPARHIGEVLKAYK 137 (336)
T ss_pred EEEEeCCccCCChHHCCHHHHHHHHHHHH
Confidence 45999999999999999999998665533
No 90
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=49.36 E-value=11 Score=40.51 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccccccccccceecCccccCCceeeee---ccccccCCCCCCCCCCCceeCCCCCCC
Q 022585 231 QKRCKYCLGTGYLACARCSNTGSLVLI---EPVSTVNGGDQPLSAPKTERCSNCSGS 284 (295)
Q Consensus 231 kkRC~YC~GTGyL~CArCsGSG~i~~~---e~~S~~~Gs~~pl~~~~t~RCpnCsGa 284 (295)
...|..|.=. ..|+.|+..=++-.. -.|..|+-. .+....||+|.+.
T Consensus 435 ~l~C~~Cg~v--~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~-----~~~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCGYI--AECPNCDSPLTLHKATGQLRCHYCGYQ-----EPIPQSCPECGSE 484 (730)
T ss_pred eeecccCCCc--ccCCCCCcceEEecCCCeeEeCCCCCC-----CCCCCCCCCCCCC
Confidence 3467777432 469999988665332 456666432 2345689999887
No 91
>PRK14873 primosome assembly protein PriA; Provisional
Probab=49.29 E-value=12 Score=39.56 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=28.5
Q ss_pred cccccccccceecCccccCCceeeee---ccccccCCCCCCCCCCCceeCCCCCCC
Q 022585 232 KRCKYCLGTGYLACARCSNTGSLVLI---EPVSTVNGGDQPLSAPKTERCSNCSGS 284 (295)
Q Consensus 232 kRC~YC~GTGyL~CArCsGSG~i~~~---e~~S~~~Gs~~pl~~~~t~RCpnCsGa 284 (295)
..|..|.-+ ..|.+|++.=++-.. -.|+.|.-. . ...+||+|.+.
T Consensus 384 l~C~~Cg~~--~~C~~C~~~L~~h~~~~~l~Ch~CG~~---~---~p~~Cp~Cgs~ 431 (665)
T PRK14873 384 LACARCRTP--ARCRHCTGPLGLPSAGGTPRCRWCGRA---A---PDWRCPRCGSD 431 (665)
T ss_pred eEhhhCcCe--eECCCCCCceeEecCCCeeECCCCcCC---C---cCccCCCCcCC
Confidence 456666543 579999988776332 357777532 1 24488888765
No 92
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=47.75 E-value=14 Score=42.43 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=14.9
Q ss_pred cccccccccc-ceecCccccCC
Q 022585 231 QKRCKYCLGT-GYLACARCSNT 251 (295)
Q Consensus 231 kkRC~YC~GT-GyL~CArCsGS 251 (295)
..+|+.|... -...|+.|.+.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~ 688 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTH 688 (1337)
T ss_pred EEECCCCCCccccccCcccCCc
Confidence 4789999873 34578877665
No 93
>PRK05580 primosome assembly protein PriA; Validated
Probab=47.51 E-value=13 Score=39.03 Aligned_cols=64 Identities=14% Similarity=0.333 Sum_probs=32.7
Q ss_pred hhhHhhhHhhhccccc-----------c---ccccccccccceecCccccCCceeeee---ccccccCCCCCCCCCCCce
Q 022585 214 VISALMIVEVNNVKQQ-----------E---QKRCKYCLGTGYLACARCSNTGSLVLI---EPVSTVNGGDQPLSAPKTE 276 (295)
Q Consensus 214 Visal~vvEiNNvkqQ-----------e---kkRC~YC~GTGyL~CArCsGSG~i~~~---e~~S~~~Gs~~pl~~~~t~ 276 (295)
.|+..++-++++.-+. + ...|..|.-. ..|..|+++=+.-.. -.|+.|... .+...
T Consensus 350 ~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~--~~C~~C~~~l~~h~~~~~l~Ch~Cg~~-----~~~~~ 422 (679)
T PRK05580 350 FLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWV--AECPHCDASLTLHRFQRRLRCHHCGYQ-----EPIPK 422 (679)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCc--cCCCCCCCceeEECCCCeEECCCCcCC-----CCCCC
Confidence 5777766555544221 1 2345555432 358888886544221 245555432 12234
Q ss_pred eCCCCCCC
Q 022585 277 RCSNCSGS 284 (295)
Q Consensus 277 RCpnCsGa 284 (295)
+||+|.+.
T Consensus 423 ~Cp~Cg~~ 430 (679)
T PRK05580 423 ACPECGST 430 (679)
T ss_pred CCCCCcCC
Confidence 68888664
No 94
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=46.48 E-value=22 Score=38.26 Aligned_cols=33 Identities=21% Similarity=0.573 Sum_probs=30.8
Q ss_pred EeeCchhHHHHHhhhHHHHHHHHHhhhhhhhHhHHHH
Q 022585 69 IIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEV 105 (295)
Q Consensus 69 iie~~~tv~dfa~mq~~ei~~ni~srrnkifllmeev 105 (295)
+.++|++|++| ++|+.++.+.|-.|+|-+|.++
T Consensus 299 ~a~~pk~V~~F----l~~Ls~k~~~~~~kel~~i~~m 331 (704)
T KOG2090|consen 299 LAKNPKTVRSF----LEELSEKLSEKTDKELAVIRDM 331 (704)
T ss_pred ccCChHHHHHH----HHHHHHhhhHHHHHHHHHHHHH
Confidence 58999999999 5799999999999999999998
No 95
>PRK11032 hypothetical protein; Provisional
Probab=46.06 E-value=13 Score=33.14 Aligned_cols=33 Identities=21% Similarity=0.536 Sum_probs=23.1
Q ss_pred cccceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCc
Q 022585 238 LGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG 285 (295)
Q Consensus 238 ~GTGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaG 285 (295)
-|.|.+.|-.|.-.-.+..+ ....+||.|.+..
T Consensus 120 vg~G~LvC~~Cg~~~~~~~p---------------~~i~pCp~C~~~~ 152 (160)
T PRK11032 120 VGLGNLVCEKCHHHLAFYTP---------------EVLPLCPKCGHDQ 152 (160)
T ss_pred eecceEEecCCCCEEEecCC---------------CcCCCCCCCCCCe
Confidence 45899999999766555321 2455799999864
No 96
>PRK04023 DNA polymerase II large subunit; Validated
Probab=44.96 E-value=20 Score=40.51 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=30.8
Q ss_pred ccccccccccccc-ceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcc-cccccCcc
Q 022585 228 QQEQKRCKYCLGT-GYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK-VGWTPNEI 294 (295)
Q Consensus 228 qQekkRC~YC~GT-GyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGK-VmCpTC~~ 294 (295)
+.+...|+.|.-. -+..|+.|... + ....+||.|.-.+. -.||.|..
T Consensus 623 EVg~RfCpsCG~~t~~frCP~CG~~---T-----------------e~i~fCP~CG~~~~~y~CPKCG~ 671 (1121)
T PRK04023 623 EIGRRKCPSCGKETFYRRCPFCGTH---T-----------------EPVYRCPRCGIEVEEDECEKCGR 671 (1121)
T ss_pred cccCccCCCCCCcCCcccCCCCCCC---C-----------------CcceeCccccCcCCCCcCCCCCC
Confidence 4567889999864 56678888665 1 13447888855443 46888863
No 97
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=43.87 E-value=16 Score=43.16 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=15.1
Q ss_pred ceEeeCchhHHHHHhhhHHHHHHHH
Q 022585 67 FCIIEGPETVQDFAKMELQEIHDNI 91 (295)
Q Consensus 67 fciie~~~tv~dfa~mq~~ei~~ni 91 (295)
.+-|.| -++.|+.+|.++|+.+=+
T Consensus 1326 ~v~i~g-~~i~e~~~l~i~~~~~~~ 1349 (1809)
T PRK00635 1326 CVRIHN-TSLSDIYQEDVTFLKKFL 1349 (1809)
T ss_pred eeeECC-eeHHHHHhCCHHHHHHHH
Confidence 344554 467788888877666533
No 98
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=42.82 E-value=9.6 Score=31.03 Aligned_cols=36 Identities=31% Similarity=0.774 Sum_probs=21.7
Q ss_pred cCccccCCceeeeeccccccC-CCCCCCCCCCceeCCCCCCCcc
Q 022585 244 ACARCSNTGSLVLIEPVSTVN-GGDQPLSAPKTERCSNCSGSGK 286 (295)
Q Consensus 244 ~CArCsGSG~i~~~e~~S~~~-Gs~~pl~~~~t~RCpnCsGaGK 286 (295)
.|.+|+|.|..... ..+.-+ | .+....|+.|.|.|-
T Consensus 7 ~c~~c~g~g~al~~-~~s~~~~G------~pvfk~c~rcgg~G~ 43 (95)
T PF03589_consen 7 SCRRCAGDGAALDM-KQSKAQFG------VPVFKDCERCGGRGY 43 (95)
T ss_pred CcCccCCcceeccH-HHhHhccC------CchhhhhhhhcCCCC
Confidence 56677777754332 122222 2 356778999999984
No 99
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=42.30 E-value=12 Score=35.48 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=14.5
Q ss_pred ccccccccccccceec
Q 022585 229 QEQKRCKYCLGTGYLA 244 (295)
Q Consensus 229 QekkRC~YC~GTGyL~ 244 (295)
++...|+.|+|+|+++
T Consensus 36 ~~~vtCPTCqGtGrIP 51 (238)
T PF07092_consen 36 RDSVTCPTCQGTGRIP 51 (238)
T ss_pred CCCCcCCCCcCCccCC
Confidence 4778999999999998
No 100
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=41.97 E-value=4.7 Score=33.56 Aligned_cols=55 Identities=22% Similarity=0.412 Sum_probs=28.6
Q ss_pred cccccCc--ceecccCcchhh-hhHhhhHhhhccccccccccccccc------cceecCccccCCc
Q 022585 196 QLSQVDP--IVASFSGGAVGV-ISALMIVEVNNVKQQEQKRCKYCLG------TGYLACARCSNTG 252 (295)
Q Consensus 196 qlsqvDp--iVAsfsGGAVGV-isal~vvEiNNvkqQekkRC~YC~G------TGyL~CArCsGSG 252 (295)
.||+||| +-.+|-=-+=|- +..=.-++|+.++ -..+|..|.- ..+..|++|.+..
T Consensus 35 ~ls~V~pe~L~faf~~~~~~T~~~ega~L~Ie~vp--~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 35 ERSGMDKSLFVSAFETFREESLVCKDAILDIVDEK--VELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred cccCcCHHHHHHHHHHHhcCCcccCCCEEEEEecC--CEEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 6788887 323331111111 1111235666666 6677888863 2344477776654
No 101
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=39.87 E-value=15 Score=43.27 Aligned_cols=11 Identities=36% Similarity=0.930 Sum_probs=5.0
Q ss_pred CceeCCCCCCC
Q 022585 274 KTERCSNCSGS 284 (295)
Q Consensus 274 ~t~RCpnCsGa 284 (295)
...+|+.|.|+
T Consensus 1629 v~~~C~~C~G~ 1639 (1809)
T PRK00635 1629 EKRPCPTCSGF 1639 (1809)
T ss_pred cccCCCCCCCc
Confidence 34445555443
No 102
>PF14353 CpXC: CpXC protein
Probab=39.76 E-value=28 Score=28.48 Aligned_cols=42 Identities=14% Similarity=0.440 Sum_probs=24.9
Q ss_pred ecCccccCCceeeeeccccccCCCCCC------C-CCCCceeCCCCCCCccc
Q 022585 243 LACARCSNTGSLVLIEPVSTVNGGDQP------L-SAPKTERCSNCSGSGKV 287 (295)
Q Consensus 243 L~CArCsGSG~i~~~e~~S~~~Gs~~p------l-~~~~t~RCpnCsGaGKV 287 (295)
+.|+.|...+...+...+.... +| + -.--..+||+|...+.+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~---~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADE---DPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcC---CHHHHHHHHcCCcCEEECCCCCCceec
Confidence 5788888888765543333211 11 0 00136679999988765
No 103
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=39.29 E-value=23 Score=30.71 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=24.9
Q ss_pred cceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccccccCc
Q 022585 240 TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVGWTPNE 293 (295)
Q Consensus 240 TGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVmCpTC~ 293 (295)
.+...|..|.|.+.+ +|..|+|+.+......+ .+.+.+.|+.|.
T Consensus 97 ~~~~~C~~Cgg~rfv----~C~~C~Gs~k~~~~~~~------~~~~~~rC~~Cn 140 (147)
T cd03031 97 AGGGVCEGCGGARFV----PCSECNGSCKVFAENAT------AAGGFLRCPECN 140 (147)
T ss_pred cCCCCCCCCCCcCeE----ECCCCCCcceEEeccCc------ccccEEECCCCC
Confidence 445568888888866 56666665333211111 234456777774
No 104
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=38.88 E-value=23 Score=39.29 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=20.3
Q ss_pred cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCC
Q 022585 244 ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGS 284 (295)
Q Consensus 244 ~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGa 284 (295)
+|..|+|.|.+.++-. .. +....+|+.|.|+
T Consensus 732 RCe~C~GdG~ikIeM~-FL---------pdVyv~CevC~Gk 762 (935)
T COG0178 732 RCEACQGDGVIKIEMH-FL---------PDVYVPCEVCHGK 762 (935)
T ss_pred CCccccCCceEEEEec-cC---------CCceeeCCCcCCc
Confidence 5778888887755321 11 2467788888885
No 105
>PRK00295 hypothetical protein; Provisional
Probab=38.74 E-value=1.2e+02 Score=23.34 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=29.7
Q ss_pred HHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhhhhccCCCcccccCCCCC
Q 022585 79 FAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPS 132 (295)
Q Consensus 79 fa~mq~~ei~~ni~srrnkifllmeevrrLRiqqrik~~~~g~~~~~~~~e~~~ 132 (295)
|..-.++++-+=|..-...|=.|-.++|.|+ +|++..+.+.....++...|-
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~~~~~~~~e~~PPH 67 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMVGQFGSFEEEAPPPH 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCCCCCcCC
Confidence 4444466777766666667777777888874 355555433333333334443
No 106
>PRK05978 hypothetical protein; Provisional
Probab=37.00 E-value=17 Score=32.16 Aligned_cols=13 Identities=46% Similarity=1.073 Sum_probs=7.4
Q ss_pred CceeCCCCCCCccc
Q 022585 274 KTERCSNCSGSGKV 287 (295)
Q Consensus 274 ~t~RCpnCsGaGKV 287 (295)
-+.|||+| |.|+.
T Consensus 32 l~grCP~C-G~G~L 44 (148)
T PRK05978 32 FRGRCPAC-GEGKL 44 (148)
T ss_pred HcCcCCCC-CCCcc
Confidence 35567777 45554
No 107
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=35.92 E-value=42 Score=24.74 Aligned_cols=33 Identities=15% Similarity=0.386 Sum_probs=26.3
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhhh
Q 022585 77 QDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKN 116 (295)
Q Consensus 77 ~dfa~mq~~ei~~ni~srrnkifllmeevrrLRiqqrik~ 116 (295)
+|+-+|..+||++.|..=+. |.-.||.|..+..
T Consensus 2 ~elr~ls~~eL~~~l~elk~-------eL~~Lr~q~~~~~ 34 (58)
T PF00831_consen 2 KELRELSDEELQEKLEELKK-------ELFNLRFQKATGQ 34 (58)
T ss_dssp HHHCHSHHHHHHHHHHHHHH-------HHHHHHHHHHHSS
T ss_pred HHHHhCCHHHHHHHHHHHHH-------HHHHHHHHHHhcc
Confidence 68889999999998777554 6678999987733
No 108
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=35.05 E-value=20 Score=24.66 Aligned_cols=9 Identities=22% Similarity=0.881 Sum_probs=7.0
Q ss_pred cCccccCCc
Q 022585 244 ACARCSNTG 252 (295)
Q Consensus 244 ~CArCsGSG 252 (295)
.|+.|.++-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 588888876
No 109
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=34.57 E-value=29 Score=28.78 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=14.5
Q ss_pred CCCceeCCCCC----------CCcccccccCc
Q 022585 272 APKTERCSNCS----------GSGKVGWTPNE 293 (295)
Q Consensus 272 ~~~t~RCpnCs----------GaGKVmCpTC~ 293 (295)
.++...||+|. |.+.+.|+.|.
T Consensus 18 lpt~f~CP~Cge~~v~v~~~k~~~h~~C~~CG 49 (99)
T PRK14892 18 LPKIFECPRCGKVSISVKIKKNIAIITCGNCG 49 (99)
T ss_pred CCcEeECCCCCCeEeeeecCCCcceEECCCCC
Confidence 35666788887 34556688775
No 110
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=34.35 E-value=1.5e+02 Score=28.22 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhccc
Q 022585 154 TCFSLIAGVILFGGL 168 (295)
Q Consensus 154 ~~~~~i~~ii~fggl 168 (295)
...++++|++++|++
T Consensus 336 l~~~~~~gl~l~~~~ 350 (362)
T TIGR01010 336 ILATFVILLILYGVL 350 (362)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555543
No 111
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=33.40 E-value=22 Score=35.15 Aligned_cols=22 Identities=41% Similarity=0.851 Sum_probs=19.1
Q ss_pred cccccccccceecCccccCCceeee
Q 022585 232 KRCKYCLGTGYLACARCSNTGSLVL 256 (295)
Q Consensus 232 kRC~YC~GTGyL~CArCsGSG~i~~ 256 (295)
..|.-|.|+| |..|+++|++.+
T Consensus 261 v~~~~~~g~g---c~~ck~~~WiEi 282 (339)
T PRK00488 261 VSCFKCGGKG---CRVCKGTGWLEI 282 (339)
T ss_pred EEEeccCCCc---ccccCCCCceEE
Confidence 4698999988 999999999865
No 112
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=32.28 E-value=31 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.549 Sum_probs=17.9
Q ss_pred ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCC
Q 022585 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCS 282 (295)
Q Consensus 243 L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCs 282 (295)
+.|..|+..=.+... .+.. .....+|++|+
T Consensus 3 i~Cp~C~~~y~i~d~-~ip~---------~g~~v~C~~C~ 32 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDE-KIPP---------KGRKVRCSKCG 32 (36)
T ss_pred EECCCCCCEEeCCHH-HCCC---------CCcEEECCCCC
Confidence 568888877655321 1221 12577899886
No 113
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.63 E-value=34 Score=36.41 Aligned_cols=46 Identities=17% Similarity=0.428 Sum_probs=24.9
Q ss_pred cccccccc---cceecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCC
Q 022585 232 KRCKYCLG---TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGS 284 (295)
Q Consensus 232 kRC~YC~G---TGyL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGa 284 (295)
+.|+.|+. .|..-|.+|..+- ....|..|... ......-|++|.-.
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l---~~~~Cp~CG~~----~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSL---THKPCPQCGTE----VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCC---CCCcCCCCCCC----CCcccccccccCCc
Confidence 35777765 5666777773332 12345555432 12345568887643
No 114
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=31.01 E-value=1e+02 Score=30.95 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=60.9
Q ss_pred eeecCCCCCCccccCCCCCCCCCCCCccceeccccCCcCCCCCCCCcccccCC-----CCc--ceEeeCchhHHHHHhhh
Q 022585 11 AGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESADKN-----AAG--FCIIEGPETVQDFAKME 83 (295)
Q Consensus 11 ~~~~~~~~p~~~~~~~~~~~r~~~~~~~w~~~~s~~~sSs~a~s~~~~~~~~~-----~~~--fciie~~~tv~dfa~mq 83 (295)
+.||.+.-|||+-+-++.--|||+-+..|-+---=++-+-+.|+.+...++.. .-| |-|+++|..---+..|+
T Consensus 47 ~p~~dp~cplcpG~~ra~g~~np~ydstyvf~NdypA~~~d~p~~~~~~~~~lfk~~~v~G~c~Vicf~Pnh~ltLp~m~ 126 (354)
T KOG2958|consen 47 TPSYDPLCPLCPGNIRATGFRNPDYDSTYVFDNDYPALRRDQPTQGQDESTGLFKTISVKGVCKVICFSPNHNLTLPLMD 126 (354)
T ss_pred CCcCCCCCCCCCCcchhccccCCCCccceeccCCchhhccCCCCCCCCCCccchhheeecceeEEEEeCCccccccccCC
Confidence 35677777888888888888899999999554433433334444444444322 334 45999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q 022585 84 LQEIHDNIRSRRNK 97 (295)
Q Consensus 84 ~~ei~~ni~srrnk 97 (295)
..||.+=+.+-...
T Consensus 127 ~~~i~~vv~aw~~~ 140 (354)
T KOG2958|consen 127 VVEIRDVVDAWKKL 140 (354)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999977665443
No 115
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=30.24 E-value=41 Score=25.96 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=22.0
Q ss_pred hhHHHHHhcCccccccccCcceecccCcchhhhhHhhhHhh
Q 022585 183 SYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEV 223 (295)
Q Consensus 183 sy~dfi~s~hlp~qlsqvDpiVAsfsGGAVGVisal~vvEi 223 (295)
-|..+.... |.+... --.+++.|-+||+||++++.|+
T Consensus 5 C~rCl~p~~--~~~~~~--C~~~GVlg~~~giigslqA~ea 41 (84)
T PF05237_consen 5 CYRCLFPEP--PESAPT--CAEAGVLGPVVGIIGSLQANEA 41 (84)
T ss_dssp -HHHHHTTS--S--TTS--SSTS-B-HHHHHHHHHHHHHHH
T ss_pred eehhcCCCC--CccCCC--ccccccccchHHHHHHHHHHHH
Confidence 466666444 322222 2334899999999999999994
No 116
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=29.67 E-value=18 Score=36.22 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=13.2
Q ss_pred CCceeCCCCCCCcccc
Q 022585 273 PKTERCSNCSGSGKVG 288 (295)
Q Consensus 273 ~~t~RCpnCsGaGKVm 288 (295)
...+.||.|.|+|++.
T Consensus 388 ~~~~~Cp~C~G~G~v~ 403 (414)
T TIGR00757 388 VLGTVCPHCSGTGIVK 403 (414)
T ss_pred HhcCCCCCCcCeeEEc
Confidence 4567899999999874
No 117
>PHA02683 ORF078 thioredoxin-like protein; Provisional
Probab=28.15 E-value=53 Score=26.51 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=28.7
Q ss_pred eEeeCchhHHHHHhhh---HHHHHHHHHhhhhhhhH---hHHHHHHH
Q 022585 68 CIIEGPETVQDFAKME---LQEIHDNIRSRRNKIFL---HMEEVRRL 108 (295)
Q Consensus 68 ciie~~~tv~dfa~mq---~~ei~~ni~srrnkifl---lmeevrrL 108 (295)
.|.|.+|+++=...=| +.-|.+=..+=|||-|+ |-+|+||.
T Consensus 27 ~l~eD~~~ikm~L~sqP~k~~iLk~FL~~~RNKt~~~kiLD~EirRv 73 (75)
T PHA02683 27 FINEDRENIRMVLESQPNKLRILKEFLATCRNKTFIYKILDDEIRRV 73 (75)
T ss_pred HHHcCHHHHHHHHHcCccHHHHHHHHHHHHhccchhhhhcCHHHHHh
Confidence 3667777766544444 45566677889999885 78999984
No 118
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.90 E-value=33 Score=32.69 Aligned_cols=26 Identities=35% Similarity=0.913 Sum_probs=21.3
Q ss_pred cccccccccccc----------ee-cCccccCCceee
Q 022585 230 EQKRCKYCLGTG----------YL-ACARCSNTGSLV 255 (295)
Q Consensus 230 ekkRC~YC~GTG----------yL-~CArCsGSG~i~ 255 (295)
.+..|+.|.|+| .+ .|..|.|.|.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~ 216 (288)
T KOG0715|consen 180 KRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVL 216 (288)
T ss_pred ccccchhhhCcccccccccCCcceeecccccccceec
Confidence 567899999999 33 399999999874
No 119
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=27.50 E-value=22 Score=27.95 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=12.3
Q ss_pred cceecCccccCCcee
Q 022585 240 TGYLACARCSNTGSL 254 (295)
Q Consensus 240 TGyL~CArCsGSG~i 254 (295)
+|.++||-|.|--+-
T Consensus 2 ~G~LPCADC~GI~t~ 16 (87)
T PF04170_consen 2 EGTLPCADCPGIKTT 16 (87)
T ss_dssp EEEEEETTSSEEEEE
T ss_pred ccEeECCCCCCeEEE
Confidence 589999999987654
No 120
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=27.19 E-value=35 Score=31.33 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=21.8
Q ss_pred CCCCCCc-cchhHHHHHHHHHHHHHHHHHhhccccccc
Q 022585 136 FIPFLPP-LSAANLKVYYATCFSLIAGVILFGGLLAPS 172 (295)
Q Consensus 136 ~ipflp~-lt~~~l~~~y~~~~~~i~~ii~fggl~aP~ 172 (295)
.||.||- +.+.... ++.+++..+.++.+||.+.|=+
T Consensus 152 liPllpy~~~~~~~~-~~~s~~~~~~aL~~~G~~~a~~ 188 (218)
T cd02432 152 LLPLLAILLAPAAWK-VPVTIIATLLALALTGYVSARL 188 (218)
T ss_pred HHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 2233333 6667777778888888877643
No 121
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=26.97 E-value=2.2e+02 Score=27.49 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=19.8
Q ss_pred CccchhHHHHHHH---HHHHHHHHHHhhccccccchhh
Q 022585 141 PPLSAANLKVYYA---TCFSLIAGVILFGGLLAPSLEL 175 (295)
Q Consensus 141 p~lt~~~l~~~y~---~~~~~i~~ii~fggl~aP~le~ 175 (295)
|++.-+++++=.. -...+++.++.+-.++++++..
T Consensus 293 ~~ldl~~I~~QslrL~~~~l~~~~~~~l~~iWsdll~a 330 (340)
T PF12794_consen 293 PELDLEQISQQSLRLLRSILLLILLVGLYWIWSDLLPA 330 (340)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666332 3344455555566667777654
No 122
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=26.89 E-value=22 Score=35.68 Aligned_cols=62 Identities=31% Similarity=0.482 Sum_probs=33.4
Q ss_pred cCCCchhHHHHHhcC------ccccc---cccCcceecccCcchhhhhHhhhHhhhcccccc------ccccccccccce
Q 022585 178 GIGGTSYADFIQSVH------LPMQL---SQVDPIVASFSGGAVGVISALMIVEVNNVKQQE------QKRCKYCLGTGY 242 (295)
Q Consensus 178 Glggtsy~dfi~s~h------lp~ql---sqvDpiVAsfsGGAVGVisal~vvEiNNvkqQe------kkRC~YC~GTGy 242 (295)
+|||.=--|||...+ |=..| ..=|+.-..+. | ++.|=++|+-.=|... ...|++|+|+|+
T Consensus 327 nigGiIvIDFIdM~~~~~~~~v~~~l~~~~~~D~~k~~v~----~-~T~lGLvE~TRkr~~~sL~e~~~~~Cp~C~G~G~ 401 (414)
T TIGR00757 327 NLGGIIIIDFIDMKSEKNQRRVLERLKEALRRDRARIQIS----G-ISEFGLVEMTRKRLRESLMEVLGTVCPHCSGTGI 401 (414)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCcEEc----c-cCCCcceEEeccccCcChHHHhcCCCCCCcCeeE
Confidence 567776778885331 11111 12344332322 2 6667788876544322 367888888887
Q ss_pred ec
Q 022585 243 LA 244 (295)
Q Consensus 243 L~ 244 (295)
+.
T Consensus 402 v~ 403 (414)
T TIGR00757 402 VK 403 (414)
T ss_pred Ec
Confidence 64
No 123
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=26.33 E-value=73 Score=31.06 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=70.9
Q ss_pred cccchhhhccCCCchhHHHHHhcCccccccccCcceecccCcchhhhhHhhhHhhh--ccc--ccccccccccccc----
Q 022585 169 LAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVN--NVK--QQEQKRCKYCLGT---- 240 (295)
Q Consensus 169 ~aP~le~klGlggtsy~dfi~s~hlp~qlsqvDpiVAsfsGGAVGVisal~vvEiN--Nvk--qQekkRC~YC~GT---- 240 (295)
++++++-....+-.--+. +-.-.|--+.++|+.-.+=|...|+-|.-+.+.--+- ... +..+..|+-|.+.
T Consensus 119 ~~~~l~~l~~~~~~~le~-~a~alL~~~~~~~~~a~apfi~AALq~~~~~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s 197 (305)
T TIGR01562 119 AGAALEQLREAEEGQLKA-MAIALLAGDFDLLSAALVPFLGAALQVAWAHWALGLEGGAVVETRESRTLCPACGSPPVAS 197 (305)
T ss_pred HHHHHHHHHhCCHHHHHH-HHHHHhcCCccccchhhhHHHHHHHHHHHHHHHHhCCccccCcccCCCCcCCCCCChhhhh
Confidence 344555544433333333 3445567788888877777888887777777664332 222 2356799999762
Q ss_pred ---------c--eecCccccCCceeeeeccccccCCCCCC----------CCCCCceeCCCCCCCcccc
Q 022585 241 ---------G--YLACARCSNTGSLVLIEPVSTVNGGDQP----------LSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 241 ---------G--yL~CArCsGSG~i~~~e~~S~~~Gs~~p----------l~~~~t~RCpnCsGaGKVm 288 (295)
| |+.|..|...=.... -.|..|+.++.- ......+.|.+|.++=|+.
T Consensus 198 ~~~~~~~~~G~RyL~CslC~teW~~~R-~~C~~Cg~~~~l~y~~~e~~~~~~~~r~e~C~~C~~YlK~~ 265 (305)
T TIGR01562 198 MVRQGGKETGLRYLSCSLCATEWHYVR-VKCSHCEESKHLAYLSLEHDAEKAVLKAETCDSCQGYLKIL 265 (305)
T ss_pred hhcccCCCCCceEEEcCCCCCcccccC-ccCCCCCCCCceeeEeecCCCCCcceEEeeccccccchhhh
Confidence 1 888988887665543 356666543211 0123456799999887764
No 124
>PF12785 VESA1_N: Variant erythrocyte surface antigen-1; InterPro: IPR024751 This entry represents variant erythrocyte surface antigen 1, versions a and b, of Babesia. Babesia bovis is a tick-borne, intra-erythrocytic, protozoal parasite of cattle that shares many lifestyle parallels with the most virulent of the human malarial parasites, Plasmodium falciparum. Babesia uses antigenic variation to establish consistent infections of long duration. The two variants of VESA1, a and b, are expressed from different but closely related genes, and variation is achieved through the involvement of a segmental gene conversion mechanism and low-frequency epigenetic in situ switching of transcriptional activity from the VESA1 gene-pair to a possible other gene pair [].
Probab=26.30 E-value=68 Score=33.33 Aligned_cols=34 Identities=35% Similarity=0.587 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccccccchhhhccCCCch-hHHHHHhcCcccccccc
Q 022585 144 SAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTS-YADFIQSVHLPMQLSQV 200 (295)
Q Consensus 144 t~~~l~~~y~~~~~~i~~ii~fggl~aP~le~klGlggts-y~dfi~s~hlp~qlsqv 200 (295)
+++.++..---.|++| =|||||. --.||. |||||
T Consensus 31 ~~~~v~~~ln~lfslv-----------------qglggtavvrtyid------qlaqv 65 (462)
T PF12785_consen 31 TKEQVTEHLNGLFSLV-----------------QGLGGTAVVRTYID------QLAQV 65 (462)
T ss_pred cHHHHHHHHHhHHHHH-----------------hccCCceeHHHHHH------HHHHH
Confidence 5666776666666654 4899993 223442 89986
No 125
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=26.12 E-value=41 Score=22.76 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=5.3
Q ss_pred CceeCCCCC
Q 022585 274 KTERCSNCS 282 (295)
Q Consensus 274 ~t~RCpnCs 282 (295)
....|+.|.
T Consensus 20 ~~~~C~~Cg 28 (33)
T PF08792_consen 20 DYEVCIFCG 28 (33)
T ss_pred CeEEcccCC
Confidence 355666664
No 126
>smart00261 FU Furin-like repeats.
Probab=25.93 E-value=41 Score=22.68 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=12.0
Q ss_pred eeCCCCCCCcccccccCcc
Q 022585 276 ERCSNCSGSGKVGWTPNEI 294 (295)
Q Consensus 276 ~RCpnCsGaGKVmCpTC~~ 294 (295)
..|..|.|.+...|.+|..
T Consensus 9 ~~C~~C~~~~~~~C~~C~~ 27 (46)
T smart00261 9 PECATCTGPGPDDCTSCKH 27 (46)
T ss_pred ccccccCCcCcCcCccCCc
Confidence 3566667666666766643
No 127
>PHA03029 hypothetical protein; Provisional
Probab=24.87 E-value=51 Score=27.08 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhhhhHhHH
Q 022585 85 QEIHDNIRSRRNKIFLHME 103 (295)
Q Consensus 85 ~ei~~ni~srrnkifllme 103 (295)
..|.|||+|||.-....|.
T Consensus 39 aai~qnirsrrkg~ywfln 57 (92)
T PHA03029 39 AAIDQNIRSRRKGLYWFLN 57 (92)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 4678999999988766554
No 128
>PRK00420 hypothetical protein; Validated
Probab=24.77 E-value=42 Score=28.51 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=4.3
Q ss_pred CcccccccC
Q 022585 284 SGKVGWTPN 292 (295)
Q Consensus 284 aGKVmCpTC 292 (295)
.|++.||.|
T Consensus 38 ~g~~~Cp~C 46 (112)
T PRK00420 38 DGEVVCPVH 46 (112)
T ss_pred CCceECCCC
Confidence 344445544
No 129
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=24.28 E-value=59 Score=35.72 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=32.9
Q ss_pred ccccccccccceecCccccCCce-eeeeccccccCCCCCC--CCCCCceeCCCCCCCcccccccCc
Q 022585 231 QKRCKYCLGTGYLACARCSNTGS-LVLIEPVSTVNGGDQP--LSAPKTERCSNCSGSGKVGWTPNE 293 (295)
Q Consensus 231 kkRC~YC~GTGyL~CArCsGSG~-i~~~e~~S~~~Gs~~p--l~~~~t~RCpnCsGaGKVmCpTC~ 293 (295)
...=.-|+|.|++.|..|.=..- .-..=-+++.+-+.+. ........=|-|+|.|+-.|-.|.
T Consensus 463 e~~s~~C~g~G~~~CG~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~ 528 (783)
T KOG1226|consen 463 EPNSALCHGNGTFVCGQCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCGQCV 528 (783)
T ss_pred CCCccccCCCCcEEecceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCCceE
Confidence 44446688999999999975432 2111001110000000 000001111389999999999996
No 130
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=24.27 E-value=46 Score=23.62 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=4.6
Q ss_pred CcccccccC
Q 022585 284 SGKVGWTPN 292 (295)
Q Consensus 284 aGKVmCpTC 292 (295)
.|++.|+.|
T Consensus 32 ~g~~~Cv~C 40 (41)
T PF06677_consen 32 DGKIYCVSC 40 (41)
T ss_pred CCCEECCCC
Confidence 345555555
No 131
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=23.83 E-value=67 Score=21.88 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=8.6
Q ss_pred CceeCCCCCCC
Q 022585 274 KTERCSNCSGS 284 (295)
Q Consensus 274 ~t~RCpnCsGa 284 (295)
....|++|.|.
T Consensus 18 ~id~C~~C~G~ 28 (41)
T PF13453_consen 18 EIDVCPSCGGI 28 (41)
T ss_pred EEEECCCCCeE
Confidence 46679999983
No 132
>PHA02901 virus redox protein; Provisional
Probab=23.69 E-value=68 Score=25.92 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=28.5
Q ss_pred eEeeCchhHHHHHhhh---HHHHHHHHHhhhhhhhH---hHHHHHHH
Q 022585 68 CIIEGPETVQDFAKME---LQEIHDNIRSRRNKIFL---HMEEVRRL 108 (295)
Q Consensus 68 ciie~~~tv~dfa~mq---~~ei~~ni~srrnkifl---lmeevrrL 108 (295)
.|.|.+|+++=...=| ++-|.+=..+=|||-|+ |-+|+||.
T Consensus 27 ~l~eDr~~ik~~L~sqP~k~~iLk~FL~~~RNKt~~~kiLD~EirRV 73 (75)
T PHA02901 27 YLKEDRETIRAILESQPYKKKILKQFLATSRNKTFLYKILDPEIRRV 73 (75)
T ss_pred HHHhCHHHHHHHHHcCchHHHHHHHHHHHHhccchhhhhcCHHHHHh
Confidence 3567777766544444 44566677889999885 78999984
No 133
>KOG2706 consensus Predicted membrane protein [Function unknown]
Probab=23.66 E-value=79 Score=32.13 Aligned_cols=103 Identities=27% Similarity=0.433 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhhhccCCCcccccCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHH------------Hhhccccccc
Q 022585 105 VRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGV------------ILFGGLLAPS 172 (295)
Q Consensus 105 vrrLRiqqrik~~~~g~~~~~~~~e~~~~~s~ipflp~lt~~~l~~~y~~~~~~i~~i------------i~fggl~aP~ 172 (295)
-+||.-...-|.-+..+--.|+++|.-+|-- =||.||.+.+-.|+--+..+..|= ++| --+||+
T Consensus 126 WkrlqahdeqkkndqrdVHke~~ieikdYd~---EL~slsaaEi~~Y~f~f~Gl~TGPYYrYq~~~D~fem~f-Ks~aPT 201 (476)
T KOG2706|consen 126 WKRLQAHDEQKKNDQRDVHKEDEIEIKDYDT---ELPSLSAAEIFAYFFHFCGLFTGPYYRYQMLIDSFEMIF-KSWAPT 201 (476)
T ss_pred HHHhhhhhhhhccchhhccccCCcchhhhhh---ccccchHHHHHHHHHHHhhhccCcceehhhhhhhcccch-hccCch
Confidence 3455443333333443334566677777765 677888887766543333322110 111 137999
Q ss_pred hhhhccCCCchhHHH-----HH-hcCccccccccCcce--ecccCcchh
Q 022585 173 LELKLGIGGTSYADF-----IQ-SVHLPMQLSQVDPIV--ASFSGGAVG 213 (295)
Q Consensus 173 le~klGlggtsy~df-----i~-s~hlp~qlsqvDpiV--AsfsGGAVG 213 (295)
||.||-. .-|.-| +. +--.|+..+--|.+- -||.--.|=
T Consensus 202 lEakle~--lkyalf~calflaTN~m~PLD~alSD~ffedrsF~~RLlY 248 (476)
T KOG2706|consen 202 LEAKLEF--LKYALFSCALFLATNHMFPLDIALSDAFFEDRSFFTRLLY 248 (476)
T ss_pred HHHHHHH--HHHHHHHhHHHHhhccccchHHhhhhhhhhhHHHHHHHHH
Confidence 9998742 223332 22 334588888778643 356544443
No 134
>PRK11712 ribonuclease G; Provisional
Probab=23.57 E-value=28 Score=35.83 Aligned_cols=16 Identities=31% Similarity=0.715 Sum_probs=13.2
Q ss_pred CCceeCCCCCCCcccc
Q 022585 273 PKTERCSNCSGSGKVG 288 (295)
Q Consensus 273 ~~t~RCpnCsGaGKVm 288 (295)
..++.||.|.|+|++.
T Consensus 400 ~l~~~Cp~C~G~G~v~ 415 (489)
T PRK11712 400 VLCGECPTCHGRGTVK 415 (489)
T ss_pred HhcCCCCCCCCCCCcC
Confidence 3567899999999874
No 135
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=23.27 E-value=67 Score=27.83 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=33.3
Q ss_pred HHHHHhhhhhccCCCcccccCC-CCCCCCCCCCCCccchhHHHHHHHHHHHHHHHH
Q 022585 108 LRIQQRIKNAELGISKEEQDNE-LPSFPSFIPFLPPLSAANLKVYYATCFSLIAGV 162 (295)
Q Consensus 108 LRiqqrik~~~~g~~~~~~~~e-~~~~~s~ipflp~lt~~~l~~~y~~~~~~i~~i 162 (295)
..|.++|+. |.+|+|=-+- ...|..+|=+-||++..|+-.++.-.+.++.|+
T Consensus 64 ~~Vr~~i~~---G~Sd~eI~~~~v~RYG~~Vly~Pp~~~~t~~LW~~P~lll~~G~ 116 (126)
T TIGR03147 64 HEVYSMVNE---GKSNQQIIDFMTARFGDFVLYNPPFKWQTLLLWLLPVLLLLLAF 116 (126)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHhcCCeEEecCCCCcchHHHHHHHHHHHHHHH
Confidence 346666655 5444332222 345888899999999999877666555555444
No 136
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=23.10 E-value=59 Score=23.35 Aligned_cols=13 Identities=46% Similarity=0.841 Sum_probs=9.1
Q ss_pred ceeCCCCCCCccc
Q 022585 275 TERCSNCSGSGKV 287 (295)
Q Consensus 275 t~RCpnCsGaGKV 287 (295)
...|.+|...|-+
T Consensus 26 ~~~C~~Cga~~~~ 38 (53)
T TIGR03655 26 YFECSTCGASGPV 38 (53)
T ss_pred EEECCCCCCCccc
Confidence 3478888877754
No 137
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.87 E-value=1e+02 Score=23.63 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=27.9
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhhhh
Q 022585 76 VQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNA 117 (295)
Q Consensus 76 v~dfa~mq~~ei~~ni~srrnkifllmeevrrLRiqqrik~~ 117 (295)
=+|+-.|.++||++ +|-+|=.|+=|+|=...-|.+
T Consensus 15 g~dLs~lSv~EL~~-------RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 15 GEDLSLLSVEELEE-------RIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred CCCchhcCHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999987 677888999998876665554
No 138
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.69 E-value=5.2e+02 Score=25.53 Aligned_cols=66 Identities=27% Similarity=0.273 Sum_probs=35.4
Q ss_pred HHHHHHHHhhccccccchhhhccCCCchhHHHHHhcCcccc--ccccCc----------cee--cccCcchhhhhHhhhH
Q 022585 156 FSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQ--LSQVDP----------IVA--SFSGGAVGVISALMIV 221 (295)
Q Consensus 156 ~~~i~~ii~fggl~aP~le~klGlggtsy~dfi~s~hlp~q--lsqvDp----------iVA--sfsGGAVGVisal~vv 221 (295)
.++++|+++ |..++=++|+ +-=.-.+-+|.-+.++||+- +-.+++ .++ .-.|-+..|.|+||..
T Consensus 419 ~g~~~Gl~l-g~~~~~l~e~-ld~~i~~~~~ie~~lglpvLg~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (498)
T TIGR03007 419 AGLLGGLGA-GIGLAFLLSQ-LRPTVRSVRDLRELTGLPVLGVIPMIATPEERRRRRRRLAAFLASAGLLIAVYGALMAM 496 (498)
T ss_pred HHHHHHHHH-HHHHHHHHHH-hcCcCCCHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555533 4444445555 32233366777777777752 222332 222 2235555678999988
Q ss_pred hh
Q 022585 222 EV 223 (295)
Q Consensus 222 Ei 223 (295)
|+
T Consensus 497 ~~ 498 (498)
T TIGR03007 497 EL 498 (498)
T ss_pred hC
Confidence 74
No 139
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.19 E-value=1.6e+02 Score=23.31 Aligned_cols=37 Identities=27% Similarity=0.635 Sum_probs=24.3
Q ss_pred hHHHHHhhh--HHHHHHHHHhhhhhhhHhHHHHHHHHHHHh
Q 022585 75 TVQDFAKME--LQEIHDNIRSRRNKIFLHMEEVRRLRIQQR 113 (295)
Q Consensus 75 tv~dfa~mq--~~ei~~ni~srrnkifllmeevrrLRiqqr 113 (295)
+++|+.++. ++.=-..|++|+++ ++|+++..|+-+.+
T Consensus 47 s~~eL~~LE~~Le~aL~~VR~rK~~--~l~~~i~~l~~ke~ 85 (100)
T PF01486_consen 47 SLKELQQLEQQLESALKRVRSRKDQ--LLMEQIEELKKKER 85 (100)
T ss_pred chHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 455665554 55566788888888 56777777665443
No 140
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=21.68 E-value=48 Score=37.01 Aligned_cols=23 Identities=35% Similarity=0.905 Sum_probs=20.0
Q ss_pred cccccccccc------------eecCccccCCcee
Q 022585 232 KRCKYCLGTG------------YLACARCSNTGSL 254 (295)
Q Consensus 232 kRC~YC~GTG------------yL~CArCsGSG~i 254 (295)
-||..|+|-| |++|..|+|+..-
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 4899999999 4799999999754
No 141
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=21.58 E-value=84 Score=22.48 Aligned_cols=10 Identities=20% Similarity=0.737 Sum_probs=6.8
Q ss_pred CceeCCCCCC
Q 022585 274 KTERCSNCSG 283 (295)
Q Consensus 274 ~t~RCpnCsG 283 (295)
-.+.|.+|..
T Consensus 28 ~~V~C~~Cga 37 (61)
T PF14354_consen 28 YYVECTDCGA 37 (61)
T ss_pred EEEEcCCCCC
Confidence 3567888865
No 142
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=21.06 E-value=1.6e+02 Score=22.78 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=24.6
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhh
Q 022585 76 VQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIK 115 (295)
Q Consensus 76 v~dfa~mq~~ei~~ni~srrnkifllmeevrrLRiqqrik 115 (295)
.+|+-+|..+||++.|..-|...| .||.|+...
T Consensus 6 ~~elr~ls~~eL~~~l~elk~elf-------~LRfq~atg 38 (67)
T CHL00154 6 ITDIIDLTDSEISEEIIKTKKELF-------DLRLKKATR 38 (67)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHH-------HHHHHHHhC
Confidence 578889999999997776665444 678887653
No 143
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.96 E-value=2.7e+02 Score=26.12 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=25.1
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHhhhhhc-cCCC
Q 022585 86 EIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE-LGIS 122 (295)
Q Consensus 86 ei~~ni~srrnkifllmeevrrLRiqqrik~~~-~g~~ 122 (295)
+.+..-..++++|-.++||+++|+=+---...+ +|+.
T Consensus 71 qa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 71 QAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334444567888999999999888765444445 5654
No 144
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=20.82 E-value=91 Score=28.88 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=7.9
Q ss_pred CceeCCCCCCCc
Q 022585 274 KTERCSNCSGSG 285 (295)
Q Consensus 274 ~t~RCpnCsGaG 285 (295)
.+..|.+|.|.|
T Consensus 153 ~~~~cy~c~~~~ 164 (190)
T COG5082 153 IKKFCYSCGSAG 164 (190)
T ss_pred eeeeccccCCcc
Confidence 455677777765
No 145
>PHA01745 hypothetical protein
Probab=20.71 E-value=83 Score=31.10 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHhhccccccch
Q 022585 135 SFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSL 173 (295)
Q Consensus 135 s~ipflp~lt~~~l~~~y~~~~~~i~~ii~fggl~aP~l 173 (295)
+.||-+=......|+.+.-++-- .+=.|.|||+++|++
T Consensus 102 ~vIPViH~Y~~e~l~~~ldfysq-y~d~iAfGG~Vp~s~ 139 (306)
T PHA01745 102 RIIPVIHLYPVREVDEAIDFYSQ-YTDYIAFGGIVASSK 139 (306)
T ss_pred ceeeEEeecCHHHHHHHHHHHHh-hhhhhhccccccHHh
Confidence 56666655566666554433222 344889999999983
No 146
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=20.64 E-value=41 Score=30.78 Aligned_cols=21 Identities=48% Similarity=0.618 Sum_probs=14.4
Q ss_pred cccCcceecccCcchhhhhHhhh
Q 022585 198 SQVDPIVASFSGGAVGVISALMI 220 (295)
Q Consensus 198 sqvDpiVAsfsGGAVGVisal~v 220 (295)
+..| .|||.||.|=|+|.|.|
T Consensus 156 s~FD--~~SFiGGIVL~LGv~aI 176 (186)
T PF05283_consen 156 STFD--AASFIGGIVLTLGVLAI 176 (186)
T ss_pred CCCc--hhhhhhHHHHHHHHHHH
Confidence 4455 47999999866655544
No 147
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.57 E-value=95 Score=30.42 Aligned_cols=118 Identities=20% Similarity=0.286 Sum_probs=60.1
Q ss_pred cccchhhhccCCCchhHHHHHhcCccccccccCcceecccCcchhhhhHhhhHhhhc---cc-ccccccccccccc----
Q 022585 169 LAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNN---VK-QQEQKRCKYCLGT---- 240 (295)
Q Consensus 169 ~aP~le~klGlggtsy~dfi~s~hlp~qlsqvDpiVAsfsGGAVGVisal~vvEiNN---vk-qQekkRC~YC~GT---- 240 (295)
++++++-.....-..-+.+.+.+ |=.+.++|++-.|=|...|+-|.=+.|.--+-. +. +..+..|+-|.+.
T Consensus 122 ~~~~l~~L~~~~~~~l~~~A~~L-l~~~~~~v~~~~a~Fi~AALqv~wa~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s 200 (309)
T PRK03564 122 ALAVIENLEKASTQELEDMASAL-LASDFSSVSSDKAPFIWAALSLYWAQMAQQIPGKARAEYGEQRQFCPVCGSMPVSS 200 (309)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-hcCCccccchhHHHHHHHHHHHHHHHHHhhCCcccccccccCCCCCCCCCCcchhh
Confidence 34455443333333333333332 445666777666666666666665555433331 11 1146777777552
Q ss_pred ----------ceecCccccCCceeeeeccccccCCCCCC--------CCCCCceeCCCCCCCcccc
Q 022585 241 ----------GYLACARCSNTGSLVLIEPVSTVNGGDQP--------LSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 241 ----------GyL~CArCsGSG~i~~~e~~S~~~Gs~~p--------l~~~~t~RCpnCsGaGKVm 288 (295)
=|+.|..|...=+... -.|..|+..+.- ......+.|.+|.++=|+.
T Consensus 201 ~v~~~~~~G~RyL~CslC~teW~~~R-~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~YlK~~ 265 (309)
T PRK03564 201 VVQIGTTQGLRYLHCNLCESEWHVVR-VKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTYLKIL 265 (309)
T ss_pred eeeccCCCCceEEEcCCCCCcccccC-ccCCCCCCCCceeeeeecCCCcceEeeecccccccceec
Confidence 2566666665544432 244444332111 0123556799998887764
No 148
>PF14537 Cytochrom_c3_2: Cytochrome c3; PDB: 1D4C_A 1D4E_A 1D4D_A 2K3V_A 1QO8_D 2P0B_A 2OZY_A 1M64_A 1JRX_A 1QJD_A ....
Probab=20.36 E-value=22 Score=25.66 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=31.4
Q ss_pred ccccccccccccccee---------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcc-----cccccC
Q 022585 228 QQEQKRCKYCLGTGYL---------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK-----VGWTPN 292 (295)
Q Consensus 228 qQekkRC~YC~GTGyL---------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGK-----VmCpTC 292 (295)
.+....|..||+.... .|..|.+........... .......-.....|.+|-..-. .+|.+|
T Consensus 3 ~~~~~~C~~CH~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~---~~~~~~~~~~~~~C~~CH~~h~~~~~~~~C~~C 78 (80)
T PF14537_consen 3 AQKGVNCVDCHGPHEPHKDGQVSNAQCLSCHGDEEDMAAATSD---KNNPHSAHHGKLTCTDCHNPHDPSENPETCTSC 78 (80)
T ss_dssp HTTT-TGGGTSSSSSTSSTTHHHHHHHHHHH-HHHHHHTTSSC---SCCTTSCCTSTS-GGGTS-SSSTBTCHHGGGGT
T ss_pred cccCcChhHhCCCCCcCccCCcCcChhhHcCCCHHHHHHhhcc---ccCccccccCCCCchhhccccccCccccHhHHh
Confidence 4556789999987664 699999876532211100 0000011135667888876543 346666
No 149
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.34 E-value=2.6e+02 Score=21.25 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=27.1
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhhhhc
Q 022585 76 VQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 118 (295)
Q Consensus 76 v~dfa~mq~~ei~~ni~srrnkifllmeevrrLRiqqrik~~~ 118 (295)
--=|..-.++++.+-+..-..+|=-|=++++.|+- ||++.+
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~--rl~~~~ 52 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE--RLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 33455556888888888888888888888888764 455443
No 150
>PRK04406 hypothetical protein; Provisional
Probab=20.34 E-value=3.6e+02 Score=21.13 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhhhhcc
Q 022585 84 LQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 119 (295)
Q Consensus 84 ~~ei~~ni~srrnkifllmeevrrLRiqqrik~~~~ 119 (295)
.+++-+=|..-...|=-|-.++|.|+ +|+++.+.
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~ 60 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVV--GKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcc
Confidence 56666666666666767777788773 46666543
No 151
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=20.30 E-value=1.8e+02 Score=21.89 Aligned_cols=32 Identities=16% Similarity=0.436 Sum_probs=24.6
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhh
Q 022585 76 VQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRI 114 (295)
Q Consensus 76 v~dfa~mq~~ei~~ni~srrnkifllmeevrrLRiqqri 114 (295)
+.|+-+|..+|+++.|.+-|. |.=.||+|+-.
T Consensus 3 ~~elr~ls~~eL~~~l~~lkk-------eL~~lR~~~~~ 34 (66)
T PRK00306 3 AKELRELSVEELNEKLLELKK-------ELFNLRFQKAT 34 (66)
T ss_pred HHHHhhCCHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 568999999999998777665 45577877744
No 152
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=20.04 E-value=45 Score=34.08 Aligned_cols=19 Identities=42% Similarity=0.810 Sum_probs=15.7
Q ss_pred CCceeCCCCCCCccccccc
Q 022585 273 PKTERCSNCSGSGKVGWTP 291 (295)
Q Consensus 273 ~~t~RCpnCsGaGKVmCpT 291 (295)
....+||+|.|+|.++++.
T Consensus 393 ~~~~~cp~c~G~g~v~~~~ 411 (487)
T COG1530 393 VLSERCPGCKGTGHVRSTE 411 (487)
T ss_pred eeeeECCCceeeEEEecCc
Confidence 3567899999999998864
Done!