Query 022585
Match_columns 295
No_of_seqs 87 out of 89
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 07:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1exk_A DNAJ protein; extended 98.4 1.5E-07 5.2E-12 69.6 3.7 58 225-293 5-71 (79)
2 2ctt_A DNAJ homolog subfamily 98.3 3.2E-07 1.1E-11 71.8 4.2 58 225-293 22-88 (104)
3 1nlt_A Protein YDJ1, mitochond 97.8 5.6E-06 1.9E-10 74.0 2.2 62 225-293 32-103 (248)
4 1exk_A DNAJ protein; extended 97.7 1.6E-05 5.6E-10 58.6 2.2 39 231-288 28-77 (79)
5 2ctt_A DNAJ homolog subfamily 97.6 2.9E-05 9.9E-10 60.6 3.1 39 231-288 45-94 (104)
6 1nlt_A Protein YDJ1, mitochond 97.2 0.00018 6.1E-09 64.2 3.1 41 231-288 54-109 (248)
7 3lcz_A YCZA, inhibitor of trap 96.1 0.0032 1.1E-07 45.3 2.7 28 228-255 6-36 (53)
8 3lcz_A YCZA, inhibitor of trap 95.9 0.0026 8.8E-08 45.8 1.5 28 242-288 9-36 (53)
9 2bx9_A Anti-trap, AT, tryptoph 95.9 0.0038 1.3E-07 44.9 2.4 12 276-287 24-35 (53)
10 2bx9_A Anti-trap, AT, tryptoph 94.2 0.02 7E-07 41.0 2.0 26 231-256 9-37 (53)
11 2fiy_A Protein FDHE homolog; F 75.9 1.7 5.8E-05 40.4 3.3 106 180-287 129-265 (309)
12 1pft_A TFIIB, PFTFIIBN; N-term 41.2 11 0.00037 25.5 1.4 18 231-248 5-30 (50)
13 3pmq_A Decaheme cytochrome C M 41.2 6.8 0.00023 40.2 0.6 27 226-252 186-221 (669)
14 2kz3_A Putative uncharacterize 35.2 19 0.00066 27.5 2.2 33 73-112 25-57 (83)
15 1qo8_A Flavocytochrome C3 fuma 33.4 12 0.0004 35.8 0.8 56 233-293 14-83 (566)
16 3i2t_A Epidermal growth factor 33.4 35 0.0012 33.9 4.2 62 232-295 482-551 (551)
17 2j7a_C Cytochrome C quinol deh 33.2 5.9 0.0002 32.5 -1.1 23 230-252 39-73 (159)
18 1dl6_A Transcription factor II 31.6 21 0.00071 25.4 1.7 24 230-256 10-41 (58)
19 1btq_A BAND 3 anion transport 31.1 24 0.00084 22.2 1.8 19 152-170 7-25 (26)
20 2lli_A Protein AIR2; RNA surve 29.8 61 0.0021 25.3 4.3 55 232-286 43-116 (124)
21 1y0p_A Fumarate reductase flav 29.8 14 0.00047 35.2 0.6 58 233-294 13-87 (571)
22 2jny_A Uncharacterized BCR; st 28.7 23 0.0008 26.3 1.6 22 228-249 7-35 (67)
23 2jr6_A UPF0434 protein NMA0874 28.4 23 0.0008 26.2 1.6 21 229-249 6-33 (68)
24 2hf1_A Tetraacyldisaccharide-1 27.4 22 0.00075 26.4 1.3 21 229-249 6-33 (68)
25 2kpi_A Uncharacterized protein 27.0 27 0.00091 24.9 1.6 22 228-249 7-35 (56)
26 1bnx_A Protein (BAND 3); human 26.1 67 0.0023 21.2 3.3 17 154-170 16-32 (34)
27 2pk7_A Uncharacterized protein 25.8 28 0.00096 25.9 1.6 22 228-249 5-33 (69)
28 1vq8_Z 50S ribosomal protein L 25.8 18 0.0006 27.9 0.5 26 226-251 22-54 (83)
29 2js4_A UPF0434 protein BB2007; 24.5 30 0.001 25.8 1.5 22 228-249 5-33 (70)
30 3h3g_B Parathyroid hormone-rel 24.1 33 0.0011 21.5 1.4 15 91-105 4-20 (24)
31 3ts2_A Protein LIN-28 homolog 23.9 60 0.002 26.8 3.4 39 242-291 97-137 (148)
32 1d4d_A Flavocytochrome C fumar 21.5 23 0.00077 34.1 0.4 59 233-295 15-91 (572)
33 3mqm_A Probable histone-lysine 21.2 23 0.00077 28.0 0.3 50 102-154 2-51 (126)
34 3ctk_A RIP;, rRNA N-glycosidas 21.0 27 0.00092 31.2 0.8 21 171-192 2-22 (248)
35 1ryq_A DNA-directed RNA polyme 20.9 42 0.0014 25.4 1.7 13 238-250 7-19 (69)
36 4b4t_K 26S protease regulatory 20.7 93 0.0032 29.8 4.5 40 70-109 51-90 (428)
No 1
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.41 E-value=1.5e-07 Score=69.61 Aligned_cols=58 Identities=21% Similarity=0.606 Sum_probs=43.5
Q ss_pred ccccccccccccccccce------ecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 225 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 225 NvkqQekkRC~YC~GTGy------L~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.++-+....|..|+|+|+ ..|..|+|+|.+.... |. .....+|+.|.|.|++ .|++|.
T Consensus 5 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g~-----~~~~~~C~~C~G~G~~~~~~C~~C~ 71 (79)
T 1exk_A 5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ------GF-----FAVQQTCPHCQGRGTLIKDPCNKCH 71 (79)
T ss_dssp SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE------TT-----EEEEEECTTTTTSSEECSSBCGGGT
T ss_pred EEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc------CC-----CEEeeECcCCCCccEECCCcCCCCC
Confidence 344557789999999996 6899999999875421 10 1235689999999988 888884
No 2
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=3.2e-07 Score=71.82 Aligned_cols=58 Identities=22% Similarity=0.538 Sum_probs=44.3
Q ss_pred ccccccccccccccccc------eecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc---ccccCc
Q 022585 225 NVKQQEQKRCKYCLGTG------YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---GWTPNE 293 (295)
Q Consensus 225 NvkqQekkRC~YC~GTG------yL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV---mCpTC~ 293 (295)
.++-+....|..|+|+| ...|..|+|+|.+.... | + .....+|+.|.|+|++ .|++|.
T Consensus 22 ~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~------G---~--~~~~~~C~~C~G~G~~i~~~C~~C~ 88 (104)
T 2ctt_A 22 EFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT------G---P--FVMRSTCRRCGGRGSIIISPCVVCR 88 (104)
T ss_dssp TCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE------T---T--EEEEEECSSSSSSSEECSSCCSSSS
T ss_pred EEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe------C---C--EEEEEECCcCCCcceECCCcCCCCC
Confidence 34556778999999998 47899999999875432 1 1 1246689999999998 699884
No 3
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.82 E-value=5.6e-06 Score=73.95 Aligned_cols=62 Identities=21% Similarity=0.484 Sum_probs=42.3
Q ss_pred ccccccccccccccccc-----eecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcc-----cccccCc
Q 022585 225 NVKQQEQKRCKYCLGTG-----YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK-----VGWTPNE 293 (295)
Q Consensus 225 NvkqQekkRC~YC~GTG-----yL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGK-----VmCpTC~ 293 (295)
.++-.....|..|+|+| ...|..|+|+|.+........ .......+|+.|.|+|+ ..|++|.
T Consensus 32 ~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-------~~~~~~~~C~~C~G~G~~i~~~~~C~~C~ 103 (248)
T 1nlt_A 32 KLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-------MIQRFQTECDVCHGTGDIIDPKDRCKSCN 103 (248)
T ss_dssp EEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-------EEEEEECSCTTCSSSSSCCCTTSBCSSST
T ss_pred EEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-------eEEEEEEcCCCCCCcCEEeccCCCCcccC
Confidence 44555678999999999 478999999998754321110 00024567888888884 4488884
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.66 E-value=1.6e-05 Score=58.59 Aligned_cols=39 Identities=33% Similarity=1.019 Sum_probs=32.7
Q ss_pred cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
...|+.|+|+|++ .|..|+|+|.+. ..+|+.|.|.|.+.
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-------------------KDPCNKCHGHGRVE 77 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-------------------SSBCGGGTTSSEEE
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-------------------CCcCCCCCCeEEEe
Confidence 4689999999975 799999999762 34899999999863
No 5
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=2.9e-05 Score=60.64 Aligned_cols=39 Identities=36% Similarity=0.985 Sum_probs=32.6
Q ss_pred cccccccccccee-----------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 231 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 231 kkRC~YC~GTGyL-----------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
...|+.|+|+|++ .|..|+|+|.+. ..+|+.|.|.|.+.
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-------------------~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-------------------ISPCVVCRGAGQAK 94 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-------------------SSCCSSSSSCSEEC
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-------------------CCcCCCCCCeeEEE
Confidence 5789999999965 799999999762 34899999999874
No 6
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.17 E-value=0.00018 Score=64.24 Aligned_cols=41 Identities=32% Similarity=0.836 Sum_probs=32.6
Q ss_pred cccccccccccee---------------cCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 231 kkRC~YC~GTGyL---------------~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
...|+.|+|+|++ .|..|+|+|.+. ..+.+|+.|.|.|.+.
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i-----------------~~~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII-----------------DPKDRCKSCNGKKVEN 109 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC-----------------CTTSBCSSSTTSCEEE
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe-----------------ccCCCCcccCCCceEe
Confidence 4789999999964 688888888663 2356899999999763
No 7
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.08 E-value=0.0032 Score=45.28 Aligned_cols=28 Identities=25% Similarity=0.757 Sum_probs=19.5
Q ss_pred cccccccccccccce---ecCccccCCceee
Q 022585 228 QQEQKRCKYCLGTGY---LACARCSNTGSLV 255 (295)
Q Consensus 228 qQekkRC~YC~GTGy---L~CArCsGSG~i~ 255 (295)
||-...|+.|+|+|. -+|..|+|+|.+.
T Consensus 6 qq~~~~C~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 6 DDLETTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp HHHEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred CceeccCcCCcccccCCCCcCCCCCCcEEEE
Confidence 344567888888888 4577777777653
No 8
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=95.90 E-value=0.0026 Score=45.76 Aligned_cols=28 Identities=29% Similarity=0.713 Sum_probs=23.3
Q ss_pred eecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCcccc
Q 022585 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVG 288 (295)
Q Consensus 242 yL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKVm 288 (295)
...|..|+|+|.+. ..+|++|.|.|.+.
T Consensus 9 ~~~C~~C~GsG~~i-------------------~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 9 ETTCPNCNGSGREE-------------------PEPCPKCLGKGVIL 36 (53)
T ss_dssp EEECTTTTTSCEET-------------------TEECTTTTTSSEEE
T ss_pred eccCcCCcccccCC-------------------CCcCCCCCCcEEEE
Confidence 46899999999872 35899999999874
No 9
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=95.90 E-value=0.0038 Score=44.89 Aligned_cols=12 Identities=42% Similarity=1.082 Sum_probs=7.8
Q ss_pred eeCCCCCCCccc
Q 022585 276 ERCSNCSGSGKV 287 (295)
Q Consensus 276 ~RCpnCsGaGKV 287 (295)
.+|++|.|.|++
T Consensus 24 ~~C~~C~G~G~v 35 (53)
T 2bx9_A 24 TPCPACSGKGVI 35 (53)
T ss_dssp EECTTTTTSSEE
T ss_pred CCCccCCCCccE
Confidence 367777777665
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=94.18 E-value=0.02 Score=41.03 Aligned_cols=26 Identities=27% Similarity=0.741 Sum_probs=22.1
Q ss_pred cccccccccccee---cCccccCCceeee
Q 022585 231 QKRCKYCLGTGYL---ACARCSNTGSLVL 256 (295)
Q Consensus 231 kkRC~YC~GTGyL---~CArCsGSG~i~~ 256 (295)
...|+.|+|+|+. +|..|+|+|.+..
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEE
Confidence 4589999999975 6999999998753
No 11
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=75.89 E-value=1.7 Score=40.44 Aligned_cols=106 Identities=21% Similarity=0.365 Sum_probs=57.9
Q ss_pred CCchhHHHHHhcCccccccccCcceecccCcchhhhhHhhhHhhh--cc-ccccccccccccc-------------cc--
Q 022585 180 GGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVN--NV-KQQEQKRCKYCLG-------------TG-- 241 (295)
Q Consensus 180 ggtsy~dfi~s~hlp~qlsqvDpiVAsfsGGAVGVisal~vvEiN--Nv-kqQekkRC~YC~G-------------TG-- 241 (295)
+...-+.++..+ |--+.++|+.-.+-|...|+.++-+.+.-.+. .. ....+..|+-|.+ .|
T Consensus 129 ~~~~l~~~a~~l-L~~~~~~~~~~~~~fi~aaLq~~~~~~a~~l~~~~~~~~~~~~~CPvCGs~P~~s~l~~~g~~~G~R 207 (309)
T 2fiy_A 129 EEGQRKAWAIAL-LSGQFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLR 207 (309)
T ss_dssp CHHHHHHHHHHH-HTTCGGGSCGGGHHHHHHHHHHHHHHHHHTCCTTCSCCCTTCSSCTTTCCCEEEEEEEC----CCEE
T ss_pred CHHHHHHHHHHH-HcCCcccCchHHHHHHHHHHHHHHHHHHHhCCccccCccccCCCCCCCCCcCceeEEeecCCCCCcE
Confidence 444555666544 44456666665556666666666555554332 11 1156789999965 12
Q ss_pred eecCccccCCceeeeeccccccCCCCCC-------------CCCCCceeCCCCCCCccc
Q 022585 242 YLACARCSNTGSLVLIEPVSTVNGGDQP-------------LSAPKTERCSNCSGSGKV 287 (295)
Q Consensus 242 yL~CArCsGSG~i~~~e~~S~~~Gs~~p-------------l~~~~t~RCpnCsGaGKV 287 (295)
|+.|..|...=+... -.|..|+.+++- ......+.|.+|.++=|+
T Consensus 208 ~l~Cs~C~t~W~~~R-~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~ 265 (309)
T 2fiy_A 208 YLSCSLCACEWHYVR-IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQ 265 (309)
T ss_dssp EEEETTTCCEEECCT-TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEE
T ss_pred EEEeCCCCCEEeecC-cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhh
Confidence 677877766544432 244444433111 012245668888776554
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=41.19 E-value=11 Score=25.50 Aligned_cols=18 Identities=44% Similarity=1.043 Sum_probs=13.2
Q ss_pred ccccccccc--------cceecCccc
Q 022585 231 QKRCKYCLG--------TGYLACARC 248 (295)
Q Consensus 231 kkRC~YC~G--------TGyL~CArC 248 (295)
...|+.|++ +|.+.|..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~C 30 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKC 30 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSS
T ss_pred cEeCcCCCCcceEEcCCCCeEECccc
Confidence 356888876 477888777
No 13
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=41.18 E-value=6.8 Score=40.21 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=19.7
Q ss_pred cccccccccccccccce---------ecCccccCCc
Q 022585 226 VKQQEQKRCKYCLGTGY---------LACARCSNTG 252 (295)
Q Consensus 226 vkqQekkRC~YC~GTGy---------L~CArCsGSG 252 (295)
++-.....|..|||+|. ..|..|+|+.
T Consensus 186 i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~ 221 (669)
T 3pmq_A 186 RNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSK 221 (669)
T ss_dssp CCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTT
T ss_pred EEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCc
Confidence 34446778999999762 4688888884
No 14
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=35.20 E-value=19 Score=27.54 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=25.2
Q ss_pred chhHHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 022585 73 PETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQ 112 (295)
Q Consensus 73 ~~tv~dfa~mq~~ei~~ni~srrnkifllmeevrrLRiqq 112 (295)
=.||+||...+.+|+.+. -=|-+++|+.+|-..
T Consensus 25 I~Tv~Dfl~~d~~eL~~~-------~~ls~~~v~~l~r~l 57 (83)
T 2kz3_A 25 IKTVVDLVSADLEEVAQK-------CGLSYKALVALRRVL 57 (83)
T ss_dssp CCCHHHHTTSCHHHHHHH-------HTCCHHHHHHHHHHH
T ss_pred CCCHHHHHhCCHHHHHHH-------hCCCHHHHHHHHHHH
Confidence 369999999999999873 345578888776443
No 15
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=33.42 E-value=12 Score=35.76 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=31.2
Q ss_pred cccccccccee----------cCccccCCceeeee-ccccccCCCCCCCCCCCceeCCCCCCC---cccccccCc
Q 022585 233 RCKYCLGTGYL----------ACARCSNTGSLVLI-EPVSTVNGGDQPLSAPKTERCSNCSGS---GKVGWTPNE 293 (295)
Q Consensus 233 RC~YC~GTGyL----------~CArCsGSG~i~~~-e~~S~~~Gs~~pl~~~~t~RCpnCsGa---GKVmCpTC~ 293 (295)
.|..|||.+.. .|..|++...-... ....+.+.+ -.....|.+|.-. -...|..|.
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~-----~~~~~~C~~CH~~h~~~~~~c~~ch 83 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNS-----HLGDINCTSCHKGHEEPKFYCNECH 83 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSS-----TTCSCCGGGTSCSSSCCCCGGGGTC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchh-----cCCCCCchhhCcCCcCcCchhhhhc
Confidence 79999998654 59999986322111 011111111 1135578888754 335677774
No 16
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=33.35 E-value=35 Score=33.92 Aligned_cols=62 Identities=21% Similarity=0.492 Sum_probs=35.3
Q ss_pred cccc--cccccceecCccccC---CceeeeeccccccCCC---CCCCCCCCceeCCCCCCCcccccccCccC
Q 022585 232 KRCK--YCLGTGYLACARCSN---TGSLVLIEPVSTVNGG---DQPLSAPKTERCSNCSGSGKVGWTPNEIF 295 (295)
Q Consensus 232 kRC~--YC~GTGyL~CArCsG---SG~i~~~e~~S~~~Gs---~~pl~~~~t~RCpnCsGaGKVmCpTC~~~ 295 (295)
..|. .|.|.|.-.|..|.. .|..+ +.|..-.|. +...=.+-...|.+|.|.|.-.|.+|.-+
T Consensus 482 ~~C~~~gC~Gpgp~~C~sC~~~~~~~~Cv--~~C~~~~g~y~~~~~~C~~Ch~~C~tC~G~~~~~C~sC~h~ 551 (551)
T 3i2t_A 482 DQCNEDGCWGAGTDQCLNCKNFNFNGTCI--ADCGYISNAYKFDNRTCKICHPECRTCNGAGADHCQECVHV 551 (551)
T ss_dssp TTBCTTCBSSSSTTCBSSBSSEEETTEEE--SCSCSSSCCCCCSSSCCCCCCSSCSSBCC---CCBSSCCCC
T ss_pred chhccCCCCCCCCCceeECcccCCCCCcc--ccCCCCCCcccCCCCcccCCCCcccCCCCcCcCcccccCCC
Confidence 4566 899999999999996 22222 122210011 11111234456899999999999999753
No 17
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=33.19 E-value=5.9 Score=32.45 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=17.2
Q ss_pred cccccccccccc-----e-------ecCccccCCc
Q 022585 230 EQKRCKYCLGTG-----Y-------LACARCSNTG 252 (295)
Q Consensus 230 ekkRC~YC~GTG-----y-------L~CArCsGSG 252 (295)
....|..||... + ..|..|++.-
T Consensus 39 ~~~~C~~CH~~~~~~~~~~~s~H~~~~C~~CH~p~ 73 (159)
T 2j7a_C 39 QRPFCTSCHIMNPVGVTHKLSGHANISCNDCHAPH 73 (159)
T ss_dssp SHHHHTTSGGGHHHHHHHHHSTTTTSCTHHHHSCS
T ss_pred CCchHHhcCCChhHHHHhccCCCCCCcCccccCCc
Confidence 346899999842 1 6899999874
No 18
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=31.57 E-value=21 Score=25.44 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=17.6
Q ss_pred cccccccccc--------cceecCccccCCceeee
Q 022585 230 EQKRCKYCLG--------TGYLACARCSNTGSLVL 256 (295)
Q Consensus 230 ekkRC~YC~G--------TGyL~CArCsGSG~i~~ 256 (295)
+...|++|.+ +|.+.|..| |.+..
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~C---GlVl~ 41 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPEC---GLVVG 41 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTT---CCEEC
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCC---CCEEe
Confidence 4557999976 688888888 66543
No 19
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=31.13 E-value=24 Score=22.17 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhccccc
Q 022585 152 YATCFSLIAGVILFGGLLA 170 (295)
Q Consensus 152 y~~~~~~i~~ii~fggl~a 170 (295)
.-.||+.++-.|.||||+.
T Consensus 7 ~FlyFa~l~paIaFGgLl~ 25 (26)
T 1btq_A 7 IFIYFAALSPAITFGXXXX 25 (26)
T ss_pred HHHHHHHHcchhccccccC
Confidence 3456777888999999863
No 20
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=29.78 E-value=61 Score=25.27 Aligned_cols=55 Identities=24% Similarity=0.449 Sum_probs=29.4
Q ss_pred cccccccccc-----------eecCccccCCceeeeecccccc------CCCCC-C-CCCCCceeCCCCCCCcc
Q 022585 232 KRCKYCLGTG-----------YLACARCSNTGSLVLIEPVSTV------NGGDQ-P-LSAPKTERCSNCSGSGK 286 (295)
Q Consensus 232 kRC~YC~GTG-----------yL~CArCsGSG~i~~~e~~S~~------~Gs~~-p-l~~~~t~RCpnCsGaGK 286 (295)
.+|..|...| ...|..|...|.+...=+.... ....+ + ........|.+|.+.|=
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH 116 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGH 116 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCCCCCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCT
T ss_pred ccccccCCCCCccccCcCcccCccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCc
Confidence 5677777665 2568888888877432111100 00000 0 01123567999998884
No 21
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=29.78 E-value=14 Score=35.24 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=32.0
Q ss_pred ccccccccce-----------ecCccccCCceeeeecc---ccccCCCCCCCCCCCceeCCCCCCC---cccccccCcc
Q 022585 233 RCKYCLGTGY-----------LACARCSNTGSLVLIEP---VSTVNGGDQPLSAPKTERCSNCSGS---GKVGWTPNEI 294 (295)
Q Consensus 233 RC~YC~GTGy-----------L~CArCsGSG~i~~~e~---~S~~~Gs~~pl~~~~t~RCpnCsGa---GKVmCpTC~~ 294 (295)
.|..||+.+. -.|..|+....-..... ....+. ........|.+|... ....|.+|-.
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~h~----~H~~~~~~C~~CH~~h~~~~~~C~~CH~ 87 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHA----SHFPGEVACTSCHSAHEKSMVYCDSCHS 87 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTSCCSSCCTTS----CSCCSCCCGGGTCCSSSCBCCGGGGTCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhcccccccccCCccc----cccCCCCCccccCccccCCCccccccCh
Confidence 8999999643 35999998643211110 001100 001134578888764 4566888853
No 22
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.65 E-value=23 Score=26.25 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=17.1
Q ss_pred cccccccccccc-------cceecCcccc
Q 022585 228 QQEQKRCKYCLG-------TGYLACARCS 249 (295)
Q Consensus 228 qQekkRC~YC~G-------TGyL~CArCs 249 (295)
..+.-.|+.|+| .|.+.|..|.
T Consensus 7 LLeiL~CP~ck~~L~~~~~~g~LvC~~c~ 35 (67)
T 2jny_A 7 LLEVLACPKDKGPLRYLESEQLLVNERLN 35 (67)
T ss_dssp GTCCCBCTTTCCBCEEETTTTEEEETTTT
T ss_pred HHHHhCCCCCCCcCeEeCCCCEEEcCCCC
Confidence 446678999998 6888888883
No 23
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.45 E-value=23 Score=26.24 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=15.8
Q ss_pred cccccccccccc-------ceecCcccc
Q 022585 229 QEQKRCKYCLGT-------GYLACARCS 249 (295)
Q Consensus 229 QekkRC~YC~GT-------GyL~CArCs 249 (295)
.+.-.|+.|+|. |.+.|..|.
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg 33 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYHQDKQELWSRQAK 33 (68)
T ss_dssp SCCCBCSSSCCBCEEETTTTEEEETTTT
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCC
Confidence 456788888883 888888873
No 24
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.41 E-value=22 Score=26.38 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=15.5
Q ss_pred cccccccccccc-------ceecCcccc
Q 022585 229 QEQKRCKYCLGT-------GYLACARCS 249 (295)
Q Consensus 229 QekkRC~YC~GT-------GyL~CArCs 249 (295)
.+.-.|+.|+|. |.+.|..|.
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg 33 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKSKDELICKGDR 33 (68)
T ss_dssp EEECBCTTTCCBCEEETTTTEEEETTTT
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCC
Confidence 456678888873 888888773
No 25
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=27.01 E-value=27 Score=24.92 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=17.7
Q ss_pred ccccccccccccc-----ceecCc--ccc
Q 022585 228 QQEQKRCKYCLGT-----GYLACA--RCS 249 (295)
Q Consensus 228 qQekkRC~YC~GT-----GyL~CA--rCs 249 (295)
..+.-.|+.|+|. |.+.|. .|.
T Consensus 7 lL~iL~CP~c~~~L~~~~~~L~C~~~~c~ 35 (56)
T 2kpi_A 7 LLEILACPACHAPLEERDAELICTGQDCG 35 (56)
T ss_dssp CTTSCCCSSSCSCEEEETTEEEECSSSCC
T ss_pred HHhheeCCCCCCcceecCCEEEcCCcCCC
Confidence 4467789999997 889988 884
No 26
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.08 E-value=67 Score=21.21 Aligned_cols=17 Identities=41% Similarity=0.776 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhccccc
Q 022585 154 TCFSLIAGVILFGGLLA 170 (295)
Q Consensus 154 ~~~~~i~~ii~fggl~a 170 (295)
.+|+.++-.|.||+++.
T Consensus 16 iyFa~l~PaIaFg~ll~ 32 (34)
T 1bnx_A 16 IYFAALSPAITFGGLLG 32 (34)
T ss_dssp HHHHHHHHHHHSSCSSC
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34556778899999863
No 27
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.83 E-value=28 Score=25.87 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=15.8
Q ss_pred ccccccccccccc-------ceecCcccc
Q 022585 228 QQEQKRCKYCLGT-------GYLACARCS 249 (295)
Q Consensus 228 qQekkRC~YC~GT-------GyL~CArCs 249 (295)
..+.-.|+.|+|. |.+.|..|.
T Consensus 5 LLeiL~CP~ck~~L~~~~~~~~LiC~~cg 33 (69)
T 2pk7_A 5 LLDILACPICKGPLKLSADKTELISKGAG 33 (69)
T ss_dssp GGGTCCCTTTCCCCEECTTSSEEEETTTT
T ss_pred HHhheeCCCCCCcCeEeCCCCEEEcCCCC
Confidence 3456678888873 788888773
No 28
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=25.79 E-value=18 Score=27.92 Aligned_cols=26 Identities=27% Similarity=0.631 Sum_probs=20.5
Q ss_pred cccccccccccccc-------cceecCccccCC
Q 022585 226 VKQQEQKRCKYCLG-------TGYLACARCSNT 251 (295)
Q Consensus 226 vkqQekkRC~YC~G-------TGyL~CArCsGS 251 (295)
++|..+..|+.|.+ +|...|..|.-+
T Consensus 22 ~~q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 22 SEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHSCEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred HhccccCcCCCCCCcceeccCCCeEECCCCCCE
Confidence 35667889999976 788889999764
No 29
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.47 E-value=30 Score=25.77 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=16.8
Q ss_pred cccccccccccc-------cceecCcccc
Q 022585 228 QQEQKRCKYCLG-------TGYLACARCS 249 (295)
Q Consensus 228 qQekkRC~YC~G-------TGyL~CArCs 249 (295)
..+.-.|+.|+| .|.+.|..|.
T Consensus 5 LL~iL~CP~ck~~L~~~~~~~~LiC~~cg 33 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQRAQAELVCNADR 33 (70)
T ss_dssp CCCCCBCTTTCCBEEEETTTTEEEETTTT
T ss_pred HhhheECCCCCCcCEEeCCCCEEEcCCCC
Confidence 345678999988 4888888884
No 30
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=24.07 E-value=33 Score=21.51 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=9.4
Q ss_pred HHhhhhhhhH--hHHHH
Q 022585 91 IRSRRNKIFL--HMEEV 105 (295)
Q Consensus 91 i~srrnkifl--lmeev 105 (295)
|+..|.+||| |||||
T Consensus 4 ~Q~~rRr~wL~~ll~~v 20 (24)
T 3h3g_B 4 IQDLRRRFFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 4445666776 57776
No 31
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=23.95 E-value=60 Score=26.78 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=23.9
Q ss_pred eecCccccCCceeeeeccccccCCCCCCCCCCCceeCCCCCCCccc--cccc
Q 022585 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--GWTP 291 (295)
Q Consensus 242 yL~CArCsGSG~i~~~e~~S~~~Gs~~pl~~~~t~RCpnCsGaGKV--mCpT 291 (295)
...|-+|...|++.. .|... +...+|.+|...|-+ -||.
T Consensus 97 ~~~C~~Cg~~GH~a~--~C~~~---------~~~~~C~~Cg~~GH~~r~Cp~ 137 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAK--ECKLP---------PQPKKCHFCQSINHMVASCPL 137 (148)
T ss_dssp SCCCTTTCCSSCCGG--GCCSC---------CCCCCCTTTCCSSCCGGGCTT
T ss_pred CCcccEeCCccchhh--hCCCC---------CCCCcccccCCcCCEeccCcC
Confidence 456888888877642 22221 224579999888865 3653
No 32
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=21.54 E-value=23 Score=34.08 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=31.8
Q ss_pred ccccccccc------------eecCccccCCceeeeecc-ccccCCCCCCCC-C-CCceeCCCCCCC---cccccccCcc
Q 022585 233 RCKYCLGTG------------YLACARCSNTGSLVLIEP-VSTVNGGDQPLS-A-PKTERCSNCSGS---GKVGWTPNEI 294 (295)
Q Consensus 233 RC~YC~GTG------------yL~CArCsGSG~i~~~e~-~S~~~Gs~~pl~-~-~~t~RCpnCsGa---GKVmCpTC~~ 294 (295)
.|..||+.. .-.|..|++.-.-..... .. ..+|.+ . .....|..|.-. -.+.|..|+.
T Consensus 15 ~C~~CH~~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~----~~np~~~~~~g~v~C~~Ch~~~~~~~~~c~~ch~ 90 (572)
T 1d4d_A 15 GCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKD----KVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHS 90 (572)
T ss_dssp CSTTTSSSSSCCCSSTTCHHHHHHHHHHHCCHHHHHHHCC-------CBTTBSSCCSCCCGGGTSCSSSCCCCGGGGTCC
T ss_pred ChhhhCCCCcCCCcccccccccchhhhhCCCHHHhhhhcccc----ccCCchhhcCCCCCcccccccccCCCCccccccc
Confidence 899999974 346999998722110000 00 001111 1 134478888643 3467888875
Q ss_pred C
Q 022585 295 F 295 (295)
Q Consensus 295 ~ 295 (295)
|
T Consensus 91 ~ 91 (572)
T 1d4d_A 91 F 91 (572)
T ss_dssp C
T ss_pred c
Confidence 3
No 33
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=21.16 E-value=23 Score=27.96 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhhhccCCCcccccCCCCCCCCCCCCCCccchhHHHHHHHH
Q 022585 102 MEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYAT 154 (295)
Q Consensus 102 meevrrLRiqqrik~~~~g~~~~~~~~e~~~~~s~ipflp~lt~~~l~~~y~~ 154 (295)
||--|.-|+|++++..-..+..-.++ -.-+-+-||+-|.+.+.+-+||-.
T Consensus 2 ~El~k~~~l~~~~~~i~~~l~~~~d~---~g~~~s~~F~~pv~~~~~pdY~~i 51 (126)
T 3mqm_A 2 MEVARAARLAQIFKEICDGIISYKDS---SRQALAAPLLNLPPKKKNADYYEK 51 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCBCT---TCCBTTGGGSSCCCGGGCTTHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCc---CCCChhHHhcCCCCcccCCCHHHH
Confidence 56666677777776653222111111 125667899999998888888874
No 34
>3ctk_A RIP;, rRNA N-glycosidase; alpha-beta protein, hydrolase; 1.80A {Bougainvillea spectabilis} SCOP: d.165.1.1
Probab=21.03 E-value=27 Score=31.17 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=16.2
Q ss_pred cchhhhccCCCchhHHHHHhcC
Q 022585 171 PSLELKLGIGGTSYADFIQSVH 192 (295)
Q Consensus 171 P~le~klGlggtsy~dfi~s~h 192 (295)
|++.+.|+ |+++|.+||.++.
T Consensus 2 ~tv~f~~~-~a~~Y~~Fi~~LR 22 (248)
T 3ctk_A 2 NTVSFNLG-EAYEYPTFIQDLR 22 (248)
T ss_dssp CEEEEETT-CGGGHHHHHHHHH
T ss_pred CeEEEecC-CcchHHHHHHHHH
Confidence 56666776 7789999998763
No 35
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=20.88 E-value=42 Score=25.41 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=7.8
Q ss_pred cccceecCccccC
Q 022585 238 LGTGYLACARCSN 250 (295)
Q Consensus 238 ~GTGyL~CArCsG 250 (295)
||+...+|.+|+-
T Consensus 7 ~~~~~~AC~~C~~ 19 (69)
T 1ryq_A 7 HGSSEKACRHCHY 19 (69)
T ss_dssp C---CEEETTTCB
T ss_pred cCchhhhHHhCCc
Confidence 5777788888876
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.73 E-value=93 Score=29.77 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=32.1
Q ss_pred eeCchhHHHHHhhhHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 022585 70 IEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLR 109 (295)
Q Consensus 70 ie~~~tv~dfa~mq~~ei~~ni~srrnkifllmeevrrLR 109 (295)
+.--+...|+.++|-++|+++++.-+.++.-+=||+++|+
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566789999999999999888888888888888775
Done!