BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022587
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1URQ|C Chain C, Crystal Structure Of Neuronal Q-Snares In Complex With
           R-Snare Motif Of Tomosyn
 pdb|3HD7|C Chain C, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup C 1 2 1
 pdb|3HD7|G Chain G, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup C 1 2 1
 pdb|3IPD|C Chain C, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup I 21 21 21
 pdb|3IPD|G Chain G, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup I 21 21 21
          Length = 80

 Score = 31.2 bits (69), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 37/61 (60%)

Query: 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208
           DE+ ++ +R   +VE++ + G +T   L  Q +Q+ R+   ++ I   +K+A + +K++G
Sbjct: 20  DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 79

Query: 209 R 209
           +
Sbjct: 80  K 80


>pdb|1SFC|C Chain C, Neuronal Synaptic Fusion Complex
 pdb|1SFC|G Chain G, Neuronal Synaptic Fusion Complex
 pdb|1SFC|K Chain K, Neuronal Synaptic Fusion Complex
          Length = 83

 Score = 31.2 bits (69), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 37/61 (60%)

Query: 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208
           DE+ ++ +R   +VE++ + G +T   L  Q +Q+ R+   ++ I   +K+A + +K++G
Sbjct: 23  DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 82

Query: 209 R 209
           +
Sbjct: 83  K 83


>pdb|3RK2|C Chain C, Truncated Snare Complex
 pdb|3RK2|G Chain G, Truncated Snare Complex
 pdb|3RK3|C Chain C, Truncated Snare Complex With Complexin
 pdb|3RL0|C Chain C, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|G Chain G, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|K Chain K, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|O Chain O, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|S Chain S, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|W Chain W, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|AA Chain a, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|EE Chain e, Truncated Snare Complex With Complexin (P1)
          Length = 81

 Score = 30.8 bits (68), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 36/60 (60%)

Query: 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208
           DE+ ++ +R   +VE++ + G +T   L  Q +Q+ R+   ++ I   +K+A + +K++G
Sbjct: 21  DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 80


>pdb|1N7S|C Chain C, High Resolution Structure Of A Truncated Neuronal Snare
           Complex
          Length = 79

 Score = 30.8 bits (68), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 37/61 (60%)

Query: 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208
           DE+ ++ +R   +VE++ + G +T   L  Q +Q+ R+   ++ I   +K+A + +K++G
Sbjct: 19  DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78

Query: 209 R 209
           +
Sbjct: 79  K 79


>pdb|1GL2|C Chain C, Crystal Structure Of An Endosomal Snare Core Complex
          Length = 65

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 34/62 (54%)

Query: 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI 207
           M+   Q+I+RS  +  +T ++GT+    L  Q DQ+ R  + L     ++ K+ ++++ +
Sbjct: 4   MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63

Query: 208 GR 209
            R
Sbjct: 64  SR 65


>pdb|1JTH|A Chain A, Crystal Structure And Biophysical Properties Of A Complex
           Between The N-Terminal Region Of Snap25 And The Snare
           Region Of Syntaxin 1a
 pdb|1JTH|C Chain C, Crystal Structure And Biophysical Properties Of A Complex
           Between The N-Terminal Region Of Snap25 And The Snare
           Region Of Syntaxin 1a
          Length = 82

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 35/60 (58%)

Query: 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208
           DE+ ++ +R   +VE++ + G +T   L  Q +Q+ RI   +D I   +K+A + + ++G
Sbjct: 23  DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNLTDLG 82


>pdb|3HQ8|A Chain A, Ccpa From G. Sulfurreducens S134pV135K VARIANT
 pdb|3HQ8|B Chain B, Ccpa From G. Sulfurreducens S134pV135K VARIANT
          Length = 345

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 62  MDREIKD--EEARNPPEVNKQLNDEKQSMIKELNS---YVALRK 100
            D   KD  E+A+ P +  K++N+    ++K LNS   YVAL K
Sbjct: 116 WDGRAKDLAEQAKGPVQAPKEMNNTPDQVVKTLNSIPDYVALFK 159


>pdb|1KIL|C Chain C, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
          Length = 74

 Score = 27.7 bits (60), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 35/59 (59%)

Query: 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI 207
           DE+ ++ +R   +VE++ + G +T   L  Q +Q+ R+   ++ I   +K+A + +K++
Sbjct: 15  DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDL 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,151,328
Number of Sequences: 62578
Number of extensions: 258131
Number of successful extensions: 1008
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 30
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)