Query 022587
Match_columns 295
No_of_seqs 184 out of 582
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666 V-SNARE [Intracellular 100.0 1.1E-43 2.4E-48 310.2 25.3 217 7-237 1-219 (220)
2 KOG3251 Golgi SNAP receptor co 99.5 1.3E-12 2.8E-17 115.6 21.1 202 7-236 1-211 (213)
3 PF03908 Sec20: Sec20; InterP 99.4 3.5E-12 7.5E-17 99.9 12.6 88 149-236 4-91 (92)
4 PF12352 V-SNARE_C: Snare regi 99.3 7.3E-12 1.6E-16 91.9 9.4 65 147-211 2-66 (66)
5 PF05008 V-SNARE: Vesicle tran 99.3 5.2E-11 1.1E-15 90.4 11.4 77 18-102 1-77 (79)
6 KOG3202 SNARE protein TLG1/Syn 99.2 8.7E-09 1.9E-13 93.5 24.4 211 6-227 4-225 (235)
7 KOG3208 SNARE protein GS28 [In 98.9 5.5E-07 1.2E-11 80.2 20.2 199 7-223 3-219 (231)
8 KOG0810 SNARE protein Syntaxin 98.6 3.1E-05 6.8E-10 72.9 23.5 192 44-235 83-291 (297)
9 KOG0812 SNARE protein SED5/Syn 98.3 0.0017 3.8E-08 60.2 25.9 75 150-224 224-298 (311)
10 COG5074 t-SNARE complex subuni 98.2 0.0011 2.5E-08 59.8 22.6 84 152-236 184-271 (280)
11 KOG0811 SNARE protein PEP12/VA 98.0 0.0052 1.1E-07 57.2 24.0 93 144-236 171-266 (269)
12 smart00397 t_SNARE Helical reg 97.9 0.0001 2.3E-09 52.7 8.5 62 145-206 4-65 (66)
13 KOG0809 SNARE protein TLG2/Syn 97.8 0.017 3.7E-07 53.9 22.7 77 144-220 209-285 (305)
14 KOG3385 V-SNARE [Intracellular 97.6 0.00039 8.4E-09 56.3 8.7 78 149-227 32-109 (118)
15 PF05739 SNARE: SNARE domain; 97.5 0.0016 3.4E-08 46.8 9.8 61 151-211 2-62 (63)
16 KOG3065 SNAP-25 (synaptosome-a 97.4 0.00082 1.8E-08 62.6 9.6 73 137-209 63-135 (273)
17 COG5325 t-SNARE complex subuni 97.4 0.054 1.2E-06 50.3 20.2 76 148-223 190-266 (283)
18 PF00957 Synaptobrevin: Synapt 97.3 0.0087 1.9E-07 46.2 12.5 82 153-234 3-84 (89)
19 PF09753 Use1: Membrane fusion 97.3 0.08 1.7E-06 48.6 20.7 84 137-225 154-237 (251)
20 KOG0860 Synaptobrevin/VAMP-lik 97.3 0.0076 1.6E-07 49.0 12.1 75 152-226 28-106 (116)
21 cd00193 t_SNARE Soluble NSF (N 97.0 0.0056 1.2E-07 42.8 8.2 57 150-206 3-59 (60)
22 KOG3894 SNARE protein Syntaxin 96.6 0.27 5.8E-06 46.5 18.1 99 136-234 211-313 (316)
23 KOG3065 SNAP-25 (synaptosome-a 95.3 0.48 1E-05 44.3 13.1 66 142-207 207-272 (273)
24 PRK10884 SH3 domain-containing 94.3 1.1 2.3E-05 40.3 12.5 63 168-234 129-191 (206)
25 PF06008 Laminin_I: Laminin Do 93.7 5.7 0.00012 36.6 18.6 189 8-205 44-251 (264)
26 PF00957 Synaptobrevin: Synapt 93.1 3.1 6.8E-05 31.7 11.8 56 173-234 33-88 (89)
27 KOG1666 V-SNARE [Intracellular 93.0 6.7 0.00015 35.4 18.7 34 139-172 114-147 (220)
28 PF12911 OppC_N: N-terminal TM 92.2 0.16 3.5E-06 35.4 3.1 34 203-236 4-37 (56)
29 PF05478 Prominin: Prominin; 90.6 27 0.0006 37.5 25.4 43 47-94 243-285 (806)
30 PF04210 MtrG: Tetrahydrometha 89.9 3 6.6E-05 30.9 7.9 44 182-225 13-57 (70)
31 PRK01026 tetrahydromethanopter 89.3 4 8.6E-05 30.9 8.3 46 183-228 17-63 (77)
32 TIGR01149 mtrG N5-methyltetrah 85.7 8 0.00017 28.7 7.9 40 184-223 15-55 (70)
33 PF10779 XhlA: Haemolysin XhlA 85.7 11 0.00025 27.7 9.0 14 213-226 49-62 (71)
34 PF09889 DUF2116: Uncharacteri 85.0 2.6 5.6E-05 30.4 5.0 34 201-234 25-58 (59)
35 PF12273 RCR: Chitin synthesis 84.8 0.7 1.5E-05 38.2 2.3 19 215-233 1-19 (130)
36 COG4064 MtrG Tetrahydromethano 83.9 11 0.00024 28.0 7.9 21 203-223 38-58 (75)
37 KOG0996 Structural maintenance 83.7 81 0.0017 35.4 17.6 16 273-289 684-699 (1293)
38 KOG0859 Synaptobrevin/VAMP-lik 83.2 4.2 9.1E-05 36.3 6.6 60 152-211 124-183 (217)
39 KOG2678 Predicted membrane pro 82.8 34 0.00073 31.2 12.2 80 159-238 161-241 (244)
40 KOG3202 SNARE protein TLG1/Syn 82.2 41 0.00088 30.9 19.0 87 135-229 141-230 (235)
41 PRK11281 hypothetical protein; 81.5 97 0.0021 34.8 21.3 45 167-211 285-329 (1113)
42 KOG0810 SNARE protein Syntaxin 81.4 50 0.0011 31.4 17.8 84 150-234 210-293 (297)
43 PF14362 DUF4407: Domain of un 80.5 50 0.0011 30.8 18.9 29 215-243 262-290 (301)
44 KOG0994 Extracellular matrix g 77.0 1.4E+02 0.003 33.9 19.2 37 175-211 1592-1628(1758)
45 PF05957 DUF883: Bacterial pro 76.4 33 0.00071 26.4 12.9 80 150-229 6-86 (94)
46 PF01102 Glycophorin_A: Glycop 76.0 3.9 8.4E-05 33.8 3.8 26 217-242 69-94 (122)
47 PF00038 Filament: Intermediat 75.2 71 0.0015 29.7 19.8 97 7-106 45-144 (312)
48 PF00523 Fusion_gly: Fusion gl 73.7 2.3 5.1E-05 43.0 2.4 32 184-215 441-472 (490)
49 PRK10929 putative mechanosensi 73.4 1.6E+02 0.0035 33.1 22.0 68 144-211 232-309 (1109)
50 KOG4677 Golgi integral membran 73.0 1.1E+02 0.0023 31.0 13.4 34 192-225 505-540 (554)
51 PF12777 MT: Microtubule-bindi 72.7 70 0.0015 30.7 12.2 74 138-211 220-293 (344)
52 PF05961 Chordopox_A13L: Chord 72.6 4.8 0.0001 29.7 3.2 21 216-236 5-25 (68)
53 KOG0862 Synaptobrevin/VAMP-lik 71.9 53 0.0011 29.7 10.3 66 152-217 133-198 (216)
54 PF05393 Hum_adeno_E3A: Human 71.8 9.4 0.0002 29.7 4.7 16 264-279 72-87 (94)
55 TIGR01294 P_lamban phospholamb 70.6 13 0.00027 25.4 4.6 31 193-223 8-39 (52)
56 KOG4674 Uncharacterized conser 70.6 2.3E+02 0.0049 33.5 20.2 71 141-211 393-463 (1822)
57 PF07106 TBPIP: Tat binding pr 70.1 61 0.0013 27.6 10.2 61 28-92 101-161 (169)
58 PHA03049 IMV membrane protein; 69.4 6 0.00013 29.1 3.1 20 217-236 6-25 (68)
59 PRK02224 chromosome segregatio 69.2 1.7E+02 0.0036 31.5 21.1 53 10-62 476-528 (880)
60 PF03904 DUF334: Domain of unk 68.6 95 0.0021 28.4 19.6 83 164-253 110-204 (230)
61 PRK11637 AmiB activator; Provi 68.5 1.3E+02 0.0027 29.7 22.6 27 43-69 75-101 (428)
62 KOG4025 Putative apoptosis rel 68.2 52 0.0011 28.8 9.0 87 10-102 87-176 (207)
63 KOG0811 SNARE protein PEP12/VA 68.1 1.1E+02 0.0023 28.8 18.5 32 175-206 194-226 (269)
64 TIGR00606 rad50 rad50. This fa 65.4 2.5E+02 0.0054 32.0 22.2 15 80-94 885-899 (1311)
65 PF09753 Use1: Membrane fusion 64.9 89 0.0019 28.5 10.7 47 181-227 188-236 (251)
66 PF01519 DUF16: Protein of unk 64.7 34 0.00073 27.4 6.7 38 174-211 60-97 (102)
67 PF07851 TMPIT: TMPIT-like pro 64.6 46 0.00099 32.1 8.9 33 241-273 149-181 (330)
68 PF00558 Vpu: Vpu protein; In 64.5 8.5 0.00018 29.5 3.2 22 215-236 4-25 (81)
69 KOG0994 Extracellular matrix g 64.3 2.6E+02 0.0056 31.8 19.5 22 43-64 1546-1567(1758)
70 PF15188 CCDC-167: Coiled-coil 63.3 56 0.0012 25.3 7.5 49 44-94 6-54 (85)
71 KOG4684 Uncharacterized conser 63.1 11 0.00023 34.2 4.1 41 202-242 196-236 (275)
72 KOG4603 TBP-1 interacting prot 62.9 34 0.00075 30.0 7.0 59 43-104 86-144 (201)
73 PF12669 P12: Virus attachment 62.2 7.1 0.00015 27.9 2.3 21 223-243 6-27 (58)
74 PF04272 Phospholamban: Phosph 61.6 15 0.00032 25.0 3.6 27 193-219 8-35 (52)
75 TIGR02169 SMC_prok_A chromosom 61.4 2.5E+02 0.0055 30.7 21.8 11 187-197 475-485 (1164)
76 PRK10132 hypothetical protein; 61.2 85 0.0019 25.3 12.6 78 155-232 25-103 (108)
77 PHA03386 P10 fibrous body prot 60.8 33 0.00071 27.0 5.9 56 139-198 5-60 (94)
78 PF00261 Tropomyosin: Tropomyo 60.6 1.3E+02 0.0028 27.2 14.3 65 145-209 91-155 (237)
79 PF06160 EzrA: Septation ring 60.5 2.1E+02 0.0045 29.5 15.5 62 9-70 60-128 (560)
80 PF00435 Spectrin: Spectrin re 60.2 65 0.0014 23.6 12.0 84 10-94 2-91 (105)
81 PF05531 NPV_P10: Nucleopolyhe 59.2 57 0.0012 24.7 6.8 61 138-198 3-66 (75)
82 PF07889 DUF1664: Protein of u 58.9 1E+02 0.0023 25.5 10.3 27 43-69 68-94 (126)
83 COG4575 ElaB Uncharacterized c 58.6 95 0.0021 24.9 11.1 80 146-225 12-93 (104)
84 KOG1853 LIS1-interacting prote 57.9 1.6E+02 0.0036 27.5 12.0 62 150-211 77-142 (333)
85 PF05568 ASFV_J13L: African sw 57.9 19 0.00042 30.7 4.5 24 221-244 38-61 (189)
86 PRK10884 SH3 domain-containing 56.8 1.5E+02 0.0032 26.6 14.4 103 134-239 88-193 (206)
87 PRK10404 hypothetical protein; 56.5 1E+02 0.0022 24.5 12.2 78 155-232 18-97 (101)
88 TIGR02680 conserved hypothetic 56.3 3.6E+02 0.0079 31.0 20.4 28 6-34 224-251 (1353)
89 PF02009 Rifin_STEVOR: Rifin/s 56.1 13 0.00029 35.2 3.7 23 217-239 259-281 (299)
90 PF09451 ATG27: Autophagy-rela 55.9 5.9 0.00013 36.8 1.3 15 264-278 236-250 (268)
91 PF10669 Phage_Gp23: Protein g 55.9 18 0.00038 28.8 3.7 26 215-240 15-40 (121)
92 PF15062 ARL6IP6: Haemopoietic 55.8 15 0.00032 28.4 3.2 15 264-282 44-58 (85)
93 PF05478 Prominin: Prominin; 55.5 3E+02 0.0064 29.7 20.0 77 149-225 338-423 (806)
94 TIGR00606 rad50 rad50. This fa 55.4 3.7E+02 0.0079 30.7 21.5 73 138-210 576-654 (1311)
95 PF12128 DUF3584: Protein of u 55.3 3.6E+02 0.0077 30.6 18.6 36 176-211 513-548 (1201)
96 PF08114 PMP1_2: ATPase proteo 54.9 14 0.00029 24.7 2.5 20 217-236 13-32 (43)
97 PF06024 DUF912: Nucleopolyhed 54.8 6.7 0.00014 31.1 1.3 30 213-242 61-91 (101)
98 PF07889 DUF1664: Protein of u 54.3 1.3E+02 0.0027 25.0 10.0 61 7-69 48-108 (126)
99 PF03908 Sec20: Sec20; InterP 54.1 98 0.0021 23.7 9.7 52 144-195 13-64 (92)
100 KOG0977 Nuclear envelope prote 53.9 2.7E+02 0.0058 28.8 12.7 22 47-68 205-226 (546)
101 COG5074 t-SNARE complex subuni 53.5 1.9E+02 0.0041 26.8 19.0 75 148-230 194-268 (280)
102 PHA03240 envelope glycoprotein 53.3 13 0.00029 33.6 3.0 20 217-236 213-232 (258)
103 PHA02975 hypothetical protein; 52.8 36 0.00078 25.2 4.7 11 226-236 56-66 (69)
104 PF05546 She9_MDM33: She9 / Md 52.2 1.8E+02 0.0039 26.2 16.8 54 7-60 3-56 (207)
105 PF07423 DUF1510: Protein of u 51.9 14 0.00031 33.4 3.1 27 210-236 9-35 (217)
106 PHA03049 IMV membrane protein; 51.2 22 0.00047 26.2 3.3 22 221-242 7-28 (68)
107 PRK04325 hypothetical protein; 50.9 66 0.0014 24.0 6.1 55 1-61 1-55 (74)
108 PF15106 TMEM156: TMEM156 prot 50.9 18 0.00039 32.6 3.4 33 215-251 175-209 (226)
109 KOG0250 DNA repair protein RAD 49.9 4.1E+02 0.009 29.7 20.1 49 9-63 207-255 (1074)
110 PRK02224 chromosome segregatio 49.9 3.6E+02 0.0078 29.0 20.3 31 39-69 275-305 (880)
111 PF05961 Chordopox_A13L: Chord 49.8 24 0.00051 26.1 3.3 21 222-242 8-28 (68)
112 PF06103 DUF948: Bacterial pro 49.3 1.1E+02 0.0025 23.0 8.8 46 147-195 27-72 (90)
113 COG4942 Membrane-bound metallo 49.1 1.5E+02 0.0033 29.6 9.8 66 146-211 38-103 (420)
114 PHA02681 ORF089 virion membran 48.6 30 0.00065 26.7 3.8 17 220-236 10-26 (92)
115 KOG0250 DNA repair protein RAD 48.0 4.4E+02 0.0096 29.5 22.1 22 12-33 277-298 (1074)
116 PF11570 E2R135: Coiled-coil r 47.6 1.7E+02 0.0036 24.6 8.3 73 10-94 16-88 (136)
117 PF10717 ODV-E18: Occlusion-de 47.1 22 0.00047 27.4 2.9 20 262-281 62-81 (85)
118 TIGR03545 conserved hypothetic 46.8 1.4E+02 0.0031 30.8 9.7 24 10-33 165-188 (555)
119 PF15339 Afaf: Acrosome format 46.5 36 0.00079 29.8 4.5 28 216-243 137-164 (200)
120 PF09788 Tmemb_55A: Transmembr 46.5 22 0.00048 32.9 3.4 54 204-257 186-241 (256)
121 PRK04778 septation ring format 46.4 3.5E+02 0.0075 27.8 19.8 61 7-67 217-280 (569)
122 PF10151 DUF2359: Uncharacteri 46.3 2.3E+02 0.005 28.7 10.8 44 193-236 241-284 (469)
123 PF06008 Laminin_I: Laminin Do 46.0 2.4E+02 0.0051 25.8 19.5 65 147-211 154-222 (264)
124 PF03962 Mnd1: Mnd1 family; I 45.7 1.7E+02 0.0037 25.7 8.8 56 39-94 65-121 (188)
125 cd07596 BAR_SNX The Bin/Amphip 45.4 1.4E+02 0.0031 25.5 8.4 22 43-64 145-166 (218)
126 COG1196 Smc Chromosome segrega 45.4 4.9E+02 0.011 29.3 22.0 27 184-210 852-878 (1163)
127 PF12352 V-SNARE_C: Snare regi 45.3 1.1E+02 0.0023 21.7 9.5 62 140-201 2-63 (66)
128 KOG0161 Myosin class II heavy 45.1 6.3E+02 0.014 30.4 18.9 64 142-205 1853-1916(1930)
129 PF09403 FadA: Adhesion protei 44.8 1.8E+02 0.0039 24.1 11.8 16 9-24 27-42 (126)
130 PF11657 Activator-TraM: Trans 44.8 1.9E+02 0.0042 24.5 14.0 19 193-211 100-118 (144)
131 PF06103 DUF948: Bacterial pro 44.7 1.4E+02 0.0029 22.6 9.6 61 139-199 26-86 (90)
132 PF12606 RELT: Tumour necrosis 44.2 31 0.00068 24.0 3.1 25 221-245 8-32 (50)
133 PF11346 DUF3149: Protein of u 44.0 49 0.0011 22.2 3.9 23 222-244 19-41 (42)
134 PF12495 Vip3A_N: Vegetative i 44.0 1.4E+02 0.003 24.9 7.4 87 136-222 42-128 (177)
135 PRK11677 hypothetical protein; 43.5 30 0.00064 29.0 3.5 22 216-237 3-24 (134)
136 PF11694 DUF3290: Protein of u 43.3 47 0.001 28.3 4.7 41 206-247 7-47 (149)
137 PF08651 DASH_Duo1: DASH compl 43.1 75 0.0016 24.0 5.3 37 175-211 2-38 (78)
138 PF02468 PsbN: Photosystem II 43.1 36 0.00079 23.0 3.1 20 217-236 7-26 (43)
139 PTZ00464 SNF-7-like protein; P 43.0 2.5E+02 0.0054 25.2 16.5 50 160-210 101-150 (211)
140 PF07857 DUF1632: CEO family ( 42.7 30 0.00065 32.1 3.7 20 248-267 235-254 (254)
141 PF09325 Vps5: Vps5 C terminal 42.4 2.4E+02 0.0052 24.8 9.6 28 42-69 162-189 (236)
142 TIGR02169 SMC_prok_A chromosom 41.9 5E+02 0.011 28.4 22.3 26 174-199 469-494 (1164)
143 PTZ00046 rifin; Provisional 41.6 31 0.00067 33.6 3.7 26 215-240 316-341 (358)
144 TIGR01069 mutS2 MutS2 family p 41.2 2.7E+02 0.0059 30.0 11.1 17 12-28 507-523 (771)
145 PF12729 4HB_MCP_1: Four helix 41.0 1.9E+02 0.0041 23.2 12.2 28 36-63 72-99 (181)
146 PF06143 Baculo_11_kDa: Baculo 40.8 40 0.00087 26.0 3.5 10 197-206 26-35 (84)
147 TIGR01477 RIFIN variant surfac 40.7 33 0.00071 33.4 3.7 27 214-240 310-336 (353)
148 PF12128 DUF3584: Protein of u 40.6 5.9E+02 0.013 28.8 21.6 18 182-199 772-789 (1201)
149 PF11803 UXS1_N: UDP-glucurona 40.2 23 0.0005 26.7 2.0 61 201-274 7-69 (78)
150 PHA02902 putative IMV membrane 40.0 47 0.001 24.4 3.5 23 214-236 4-26 (70)
151 smart00787 Spc7 Spc7 kinetocho 39.7 3.4E+02 0.0074 25.8 15.3 29 41-69 68-96 (312)
152 PF04111 APG6: Autophagy prote 38.4 1.6E+02 0.0034 28.1 8.0 20 45-64 66-85 (314)
153 PRK02119 hypothetical protein; 38.3 1.3E+02 0.0027 22.4 5.8 19 2-20 2-20 (73)
154 PF10498 IFT57: Intra-flagella 37.9 3.8E+02 0.0083 26.1 10.7 99 6-119 231-329 (359)
155 PF04639 Baculo_E56: Baculovir 37.7 14 0.00031 34.7 0.8 41 194-236 260-300 (305)
156 PF10873 DUF2668: Protein of u 37.5 49 0.0011 28.2 3.8 12 269-280 105-116 (155)
157 PF14937 DUF4500: Domain of un 37.4 50 0.0011 25.6 3.5 29 211-239 33-61 (86)
158 cd07912 Tweety_N N-terminal do 36.9 4.4E+02 0.0095 26.3 13.3 11 215-225 208-218 (418)
159 PF06363 Picorna_P3A: Picornav 36.9 1.8E+02 0.0039 22.9 6.6 45 198-242 52-97 (100)
160 PF11119 DUF2633: Protein of u 36.8 46 0.001 24.0 3.1 36 215-250 11-47 (59)
161 TIGR01478 STEVOR variant surfa 36.5 38 0.00081 32.0 3.3 14 54-67 59-72 (295)
162 PF06682 DUF1183: Protein of u 36.4 31 0.00067 33.1 2.8 20 219-238 158-177 (318)
163 PRK10869 recombination and rep 36.3 4.9E+02 0.011 26.7 15.0 21 84-104 297-317 (553)
164 KOG4603 TBP-1 interacting prot 35.8 3.1E+02 0.0067 24.2 12.4 70 26-102 106-175 (201)
165 KOG0161 Myosin class II heavy 35.8 8.6E+02 0.019 29.3 20.8 31 180-210 1075-1105(1930)
166 PF10661 EssA: WXG100 protein 35.7 50 0.0011 28.0 3.7 9 109-117 69-77 (145)
167 PF09125 COX2-transmemb: Cytoc 35.4 87 0.0019 20.4 3.8 10 215-224 15-24 (38)
168 TIGR02161 napC_nirT periplasmi 35.3 65 0.0014 28.4 4.5 10 248-257 44-53 (185)
169 PRK10780 periplasmic chaperone 34.9 2.8E+02 0.0061 23.5 10.8 24 9-32 50-73 (165)
170 PF13514 AAA_27: AAA domain 34.6 7E+02 0.015 27.9 18.6 42 171-212 286-327 (1111)
171 PRK04863 mukB cell division pr 34.5 8.1E+02 0.018 28.7 21.6 21 15-35 860-880 (1486)
172 KOG2150 CCR4-NOT transcription 34.4 5.5E+02 0.012 26.7 15.2 54 46-102 8-61 (575)
173 PTZ00370 STEVOR; Provisional 34.3 45 0.00098 31.5 3.5 14 54-67 58-71 (296)
174 PRK14750 kdpF potassium-transp 34.0 82 0.0018 19.4 3.4 15 222-236 9-23 (29)
175 PHA03030 hypothetical protein; 33.5 31 0.00066 27.7 1.9 18 226-243 10-27 (122)
176 PF11337 DUF3139: Protein of u 33.0 53 0.0012 24.9 3.2 12 215-226 5-16 (85)
177 PRK08455 fliL flagellar basal 32.6 37 0.0008 29.8 2.5 18 222-239 27-44 (182)
178 PRK11281 hypothetical protein; 32.6 7.8E+02 0.017 27.9 18.5 22 42-63 86-107 (1113)
179 KOG1094 Discoidin domain recep 32.4 73 0.0016 33.5 4.8 20 216-235 395-414 (807)
180 KOG3287 Membrane trafficking p 32.0 2.3E+02 0.005 25.9 7.4 37 182-218 154-190 (236)
181 PF12998 ING: Inhibitor of gro 31.8 2.3E+02 0.005 21.5 7.8 51 9-59 22-77 (105)
182 PF15450 DUF4631: Domain of un 31.7 2.8E+02 0.0061 28.5 8.7 11 83-93 433-443 (531)
183 PRK07718 fliL flagellar basal 31.7 62 0.0013 27.1 3.6 27 213-239 2-29 (142)
184 PF06387 Calcyon: D1 dopamine 31.7 24 0.00051 31.0 1.1 59 205-268 76-140 (186)
185 PF10883 DUF2681: Protein of u 31.6 64 0.0014 25.1 3.4 20 221-241 10-29 (87)
186 PF06072 Herpes_US9: Alphaherp 31.6 1.3E+02 0.0028 21.8 4.6 13 199-211 10-22 (60)
187 PF07303 Occludin_ELL: Occludi 31.5 1.4E+02 0.003 23.7 5.4 29 74-103 72-100 (101)
188 COG5325 t-SNARE complex subuni 31.5 4.5E+02 0.0098 24.8 11.7 43 180-225 229-271 (283)
189 PF01102 Glycophorin_A: Glycop 31.4 68 0.0015 26.5 3.7 11 252-262 84-94 (122)
190 KOG3433 Protein involved in me 31.2 3.8E+02 0.0083 23.9 9.9 48 46-94 119-166 (203)
191 PF11044 TMEMspv1-c74-12: Plec 31.0 98 0.0021 21.1 3.7 12 229-240 21-32 (49)
192 KOG3838 Mannose lectin ERGIC-5 31.0 5.5E+02 0.012 25.7 12.3 30 10-40 273-302 (497)
193 PF08627 CRT-like: CRT-like; 30.9 1.2E+02 0.0026 25.3 5.0 53 204-256 43-100 (130)
194 PF03938 OmpH: Outer membrane 30.8 3E+02 0.0066 22.6 10.9 59 9-67 43-104 (158)
195 PF09889 DUF2116: Uncharacteri 30.8 1.3E+02 0.0027 21.7 4.6 29 207-235 28-56 (59)
196 PF15372 DUF4600: Domain of un 30.7 3.2E+02 0.0069 22.8 8.9 46 22-69 24-70 (129)
197 PF05335 DUF745: Protein of un 30.6 3.8E+02 0.0083 23.7 11.1 61 147-207 110-170 (188)
198 PF07438 DUF1514: Protein of u 30.3 46 0.00099 24.4 2.2 19 218-236 1-19 (66)
199 PHA02911 C-type lectin-like pr 30.1 2.8E+02 0.0061 25.0 7.6 22 213-234 26-47 (213)
200 PF02179 BAG: BAG domain; Int 29.9 1.8E+02 0.0039 21.4 5.5 13 23-35 34-46 (76)
201 PF10146 zf-C4H2: Zinc finger- 29.8 4.3E+02 0.0094 24.1 9.7 47 44-95 19-65 (230)
202 PF07423 DUF1510: Protein of u 29.7 70 0.0015 29.0 3.8 35 206-240 2-36 (217)
203 PF12958 DUF3847: Protein of u 29.7 2.5E+02 0.0054 21.7 6.4 48 176-223 3-53 (86)
204 KOG2662 Magnesium transporters 29.6 5.8E+02 0.013 25.5 20.5 68 140-210 305-372 (414)
205 PRK04778 septation ring format 29.5 6.4E+02 0.014 25.9 19.7 45 14-59 254-298 (569)
206 PHA02902 putative IMV membrane 29.5 83 0.0018 23.1 3.4 23 219-241 6-28 (70)
207 PF07946 DUF1682: Protein of u 29.3 62 0.0013 30.8 3.7 47 223-269 9-55 (321)
208 PRK11637 AmiB activator; Provi 29.2 5.6E+02 0.012 25.1 22.4 29 41-69 80-108 (428)
209 PF04799 Fzo_mitofusin: fzo-li 29.2 3.3E+02 0.0073 23.8 7.8 16 79-94 147-162 (171)
210 PF07106 TBPIP: Tat binding pr 28.9 3.4E+02 0.0073 23.0 7.9 50 42-94 78-127 (169)
211 PF06143 Baculo_11_kDa: Baculo 28.8 2.3E+02 0.005 21.9 6.0 6 217-222 37-42 (84)
212 PF10661 EssA: WXG100 protein 28.6 75 0.0016 26.9 3.6 9 109-117 87-95 (145)
213 PRK02515 psbU photosystem II c 28.1 35 0.00075 28.6 1.5 40 251-291 40-82 (132)
214 cd07627 BAR_Vps5p The Bin/Amph 28.0 4.3E+02 0.0092 23.4 9.1 6 10-15 92-97 (216)
215 KOG0860 Synaptobrevin/VAMP-lik 27.9 3.4E+02 0.0074 22.2 11.0 29 173-201 59-87 (116)
216 COG5200 LUC7 U1 snRNP componen 27.8 4.5E+02 0.0097 24.0 8.4 56 13-69 79-140 (258)
217 TIGR03185 DNA_S_dndD DNA sulfu 27.5 5.5E+02 0.012 26.7 10.6 84 16-102 205-288 (650)
218 PF11669 WBP-1: WW domain-bind 27.3 1.4E+02 0.003 23.7 4.8 11 271-281 76-86 (102)
219 PF10389 CoatB: Bacteriophage 27.3 1.2E+02 0.0025 20.8 3.7 21 219-239 24-44 (46)
220 PRK13183 psbN photosystem II r 27.2 58 0.0013 22.3 2.1 18 219-236 12-29 (46)
221 PF15050 SCIMP: SCIMP protein 27.2 1.6E+02 0.0035 24.4 5.1 16 274-289 65-80 (133)
222 PF05915 DUF872: Eukaryotic pr 27.2 1.4E+02 0.0031 24.2 4.9 36 214-250 41-78 (115)
223 PF06657 Cep57_MT_bd: Centroso 26.9 2.8E+02 0.006 20.9 6.2 52 6-64 14-68 (79)
224 KOG0971 Microtubule-associated 26.9 9.2E+02 0.02 26.9 19.2 24 79-102 321-344 (1243)
225 PF00517 GP41: Retroviral enve 26.8 4.1E+02 0.0088 23.6 8.2 33 160-192 108-140 (204)
226 PF11395 DUF2873: Protein of u 26.7 1.2E+02 0.0026 19.9 3.4 13 223-235 17-29 (43)
227 PF06810 Phage_GP20: Phage min 26.6 4E+02 0.0087 22.6 8.5 26 39-64 23-48 (155)
228 smart00279 HhH2 Helix-hairpin- 26.5 63 0.0014 20.7 2.2 31 250-287 3-33 (36)
229 COG1196 Smc Chromosome segrega 26.5 9.6E+02 0.021 27.0 22.7 62 150-211 853-914 (1163)
230 PRK04863 mukB cell division pr 26.2 1.1E+03 0.024 27.6 21.1 16 147-162 450-465 (1486)
231 PF13997 YqjK: YqjK-like prote 26.2 2.7E+02 0.0059 20.6 7.1 39 173-211 2-40 (73)
232 PF04999 FtsL: Cell division p 26.0 1.2E+02 0.0026 23.2 4.2 18 208-225 6-24 (97)
233 PF08397 IMD: IRSp53/MIM homol 25.9 2.2E+02 0.0047 25.4 6.4 14 12-25 20-33 (219)
234 PRK14758 hypothetical protein; 25.9 1.1E+02 0.0025 18.4 2.9 18 216-233 7-24 (27)
235 TIGR03142 cytochro_ccmI cytoch 25.7 2.8E+02 0.0061 22.1 6.4 17 220-236 97-113 (117)
236 KOG2357 Uncharacterized conser 25.6 85 0.0019 31.2 3.8 55 215-269 103-158 (440)
237 CHL00020 psbN photosystem II p 25.5 53 0.0011 22.2 1.7 19 218-236 8-26 (43)
238 PF06160 EzrA: Septation ring 25.2 7.6E+02 0.016 25.4 20.2 58 7-64 213-273 (560)
239 COG4068 Uncharacterized protei 25.2 1.8E+02 0.004 21.0 4.5 24 200-223 29-52 (64)
240 TIGR02797 exbB tonB-system ene 25.2 78 0.0017 28.2 3.3 31 215-245 14-44 (211)
241 PF08372 PRT_C: Plant phosphor 25.1 3.4E+02 0.0073 23.3 7.0 15 170-184 72-86 (156)
242 PHA03395 p10 fibrous body prot 24.9 2.8E+02 0.006 21.6 5.8 54 144-197 9-65 (87)
243 KOG0933 Structural maintenance 24.7 1E+03 0.022 26.8 20.5 32 175-206 851-882 (1174)
244 PF13198 DUF4014: Protein of u 24.7 1.9E+02 0.0041 21.7 4.6 54 207-260 9-65 (72)
245 PF14914 LRRC37AB_C: LRRC37A/B 24.7 99 0.0022 26.4 3.6 18 208-225 113-130 (154)
246 PF15284 PAGK: Phage-encoded v 24.5 96 0.0021 22.5 3.0 17 241-257 29-45 (61)
247 KOG1937 Uncharacterized conser 24.4 7.6E+02 0.016 25.1 18.1 80 9-94 231-311 (521)
248 PF04949 Transcrip_act: Transc 24.4 4.6E+02 0.0099 22.5 10.0 21 10-30 35-55 (159)
249 PRK05529 cell division protein 24.3 60 0.0013 29.9 2.5 22 204-225 24-45 (255)
250 PF06120 Phage_HK97_TLTM: Tail 24.2 6.3E+02 0.014 24.1 18.8 49 17-69 52-100 (301)
251 PHA02690 hypothetical protein; 24.2 3.3E+02 0.0072 20.9 7.4 23 187-209 21-43 (90)
252 KOG0996 Structural maintenance 24.1 1.1E+03 0.024 26.9 20.5 32 176-207 544-575 (1293)
253 KOG3859 Septins (P-loop GTPase 24.0 6.6E+02 0.014 24.2 11.0 80 10-99 320-400 (406)
254 PRK14748 kdpF potassium-transp 24.0 1.4E+02 0.003 18.4 3.1 15 222-236 9-23 (29)
255 PRK14762 membrane protein; Pro 23.7 95 0.0021 18.5 2.3 9 215-223 2-10 (27)
256 KOG4552 Vitamin-D-receptor int 23.6 3.1E+02 0.0068 24.9 6.7 21 39-59 84-104 (272)
257 PF13166 AAA_13: AAA domain 23.6 8.4E+02 0.018 25.3 16.2 15 7-21 289-303 (712)
258 COG0216 PrfA Protein chain rel 23.6 7E+02 0.015 24.4 10.3 87 7-94 5-94 (363)
259 PF03994 DUF350: Domain of Unk 23.4 50 0.0011 22.7 1.4 30 220-249 2-31 (54)
260 PF06696 Strep_SA_rep: Strepto 23.4 1.8E+02 0.0038 17.4 4.2 18 81-98 3-20 (25)
261 PF11026 DUF2721: Protein of u 23.4 4.2E+02 0.009 21.7 8.5 22 201-222 49-71 (130)
262 PF02790 COX2_TM: Cytochrome C 23.2 2.1E+02 0.0046 20.9 5.0 21 218-238 28-48 (84)
263 PF03962 Mnd1: Mnd1 family; I 23.1 5.1E+02 0.011 22.7 10.8 53 37-94 101-153 (188)
264 PF06679 DUF1180: Protein of u 23.0 1E+02 0.0022 26.7 3.5 25 219-243 99-123 (163)
265 PF15290 Syntaphilin: Golgi-lo 22.9 5.9E+02 0.013 24.2 8.6 30 40-69 65-94 (305)
266 PF08581 Tup_N: Tup N-terminal 22.9 3.4E+02 0.0074 20.5 7.8 18 8-25 3-20 (79)
267 PHA03048 IMV membrane protein; 22.8 1.2E+02 0.0026 23.7 3.4 11 254-267 70-80 (93)
268 PF10212 TTKRSYEDQ: Predicted 22.8 8.1E+02 0.018 25.2 10.2 52 12-69 416-467 (518)
269 PTZ00382 Variant-specific surf 22.7 21 0.00045 28.1 -0.8 20 222-241 76-95 (96)
270 PF10779 XhlA: Haemolysin XhlA 22.6 3.1E+02 0.0067 19.9 8.2 56 181-236 13-69 (71)
271 PF02932 Neur_chan_memb: Neuro 22.6 1.3E+02 0.0027 24.6 4.0 36 216-251 61-97 (237)
272 PF03357 Snf7: Snf7; InterPro 22.5 4.4E+02 0.0095 21.7 8.4 52 44-95 9-60 (171)
273 PF11629 Mst1_SARAH: C termina 22.5 2.7E+02 0.0058 19.4 4.7 32 46-88 11-42 (49)
274 PF10168 Nup88: Nuclear pore c 22.5 9.7E+02 0.021 25.6 14.7 154 12-198 550-716 (717)
275 COG2332 CcmE Cytochrome c-type 22.4 83 0.0018 27.0 2.7 24 213-236 6-30 (153)
276 COG4064 MtrG Tetrahydromethano 22.3 3.4E+02 0.0074 20.3 7.4 49 182-232 23-71 (75)
277 PF05377 FlaC_arch: Flagella a 22.2 2.6E+02 0.0057 19.8 4.8 7 58-64 40-46 (55)
278 PF02009 Rifin_STEVOR: Rifin/s 22.2 99 0.0021 29.4 3.5 20 216-235 262-281 (299)
279 PTZ00478 Sec superfamily; Prov 22.2 3.7E+02 0.008 20.6 6.1 50 186-235 16-68 (81)
280 PRK09400 secE preprotein trans 22.2 3.1E+02 0.0067 19.7 5.7 48 190-237 7-57 (61)
281 PF00261 Tropomyosin: Tropomyo 22.2 5.8E+02 0.013 22.9 18.8 59 139-197 176-234 (237)
282 KOG2911 Uncharacterized conser 22.2 8.1E+02 0.018 24.6 15.6 51 159-209 312-362 (439)
283 PRK10617 cytochrome c-type pro 22.2 1.9E+02 0.0041 25.9 5.1 10 248-257 53-62 (200)
284 PRK05696 fliL flagellar basal 22.0 56 0.0012 28.1 1.7 23 217-239 22-44 (170)
285 PRK11901 hypothetical protein; 21.9 86 0.0019 30.2 3.1 33 216-248 37-69 (327)
286 PF08317 Spc7: Spc7 kinetochor 21.8 6.9E+02 0.015 23.6 17.2 61 38-101 140-202 (325)
287 PF00435 Spectrin: Spectrin re 21.7 3.2E+02 0.0068 19.7 8.9 51 44-94 2-52 (105)
288 PRK15111 antimicrobial peptide 21.7 1.5E+02 0.0031 27.7 4.6 21 204-224 16-36 (296)
289 PF04799 Fzo_mitofusin: fzo-li 21.6 5E+02 0.011 22.7 7.4 24 46-69 116-139 (171)
290 PF11446 DUF2897: Protein of u 21.5 72 0.0016 22.6 1.9 10 219-228 6-15 (55)
291 PF04508 Pox_A_type_inc: Viral 21.5 1.3E+02 0.0029 17.5 2.7 18 40-57 5-22 (23)
292 PF13121 DUF3976: Domain of un 21.5 43 0.00094 21.8 0.7 17 215-232 22-38 (41)
293 PHA03030 hypothetical protein; 21.5 53 0.0011 26.4 1.3 24 216-239 3-26 (122)
294 PF11947 DUF3464: Protein of u 21.5 2.4E+02 0.0053 24.2 5.4 31 204-239 58-88 (153)
295 TIGR02588 conserved hypothetic 21.4 1.2E+02 0.0026 25.1 3.4 28 215-242 5-32 (122)
296 PF07361 Cytochrom_B562: Cytoc 21.4 4.1E+02 0.0089 20.9 6.9 13 51-63 80-92 (103)
297 KOG0809 SNARE protein TLG2/Syn 21.4 7.2E+02 0.016 23.7 13.8 85 146-234 215-302 (305)
298 PF05545 FixQ: Cbb3-type cytoc 21.2 1.2E+02 0.0025 20.5 2.8 10 227-236 21-30 (49)
299 COG4473 EcsB Predicted ABC-typ 21.1 2.8E+02 0.0061 27.3 6.3 57 205-263 19-75 (379)
300 TIGR01010 BexC_CtrB_KpsE polys 21.1 7.2E+02 0.016 23.6 15.4 24 42-65 176-199 (362)
301 PF15102 TMEM154: TMEM154 prot 20.3 30 0.00066 29.4 -0.3 6 216-221 58-63 (146)
302 PRK10414 biopolymer transport 20.3 1E+02 0.0023 28.3 3.2 32 214-245 23-54 (244)
303 TIGR02120 GspF general secreti 20.1 4.7E+02 0.01 25.2 7.9 121 141-288 80-211 (399)
304 PF15188 CCDC-167: Coiled-coil 20.0 4.2E+02 0.0091 20.5 6.6 58 8-69 4-62 (85)
No 1
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-43 Score=310.18 Aligned_cols=217 Identities=16% Similarity=0.283 Sum_probs=195.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHH
Q 022587 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQ 86 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~ 86 (295)
||+.|+.||+||+.+.++|+++++.+... .+++|++.|.+++..++||+++|+|||+|++++ ||..|+.|+.|++
T Consensus 1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~-~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l----p~~~Rs~~~~KlR 75 (220)
T KOG1666|consen 1 MSSLFEGYEQQYRELSAEITKKIGRALSL-PGSEKKQLLSEIDSKLEEANELLDQMDLEVREL----PPNFRSSYLSKLR 75 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHhcC-CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CchhhhHHHHHHH
Confidence 89999999999999999999999999985 589999999999999999999999999999998 6688999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-h-hcchhhhccCCCCCCCCCcchhhhhhccccHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 022587 87 SMIKELNSYVALRKTYMNS-L-GNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQ 164 (295)
Q Consensus 87 ~~~~eL~~~~~l~k~~~~~-~-~~~R~~Lf~~~~~~~~~~~~~n~~~~~~~~~rq~l~~~~~~l~~t~~~L~~s~r~l~e 164 (295)
+|+++|+.++...|...+. . ..+|+++++.....+ ...+.+||++++++++++++++++|.+++|++.|
T Consensus 76 ~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~add---------~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~E 146 (220)
T KOG1666|consen 76 EYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEADD---------QNISADQRARLLQNTERLERSTDRLKDSQRIALE 146 (220)
T ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHhhhhccc---------cccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHH
Confidence 9999999865544444321 1 236888886543221 1246789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 022587 165 TIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVL 237 (295)
Q Consensus 165 TeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~iii~~~~ 237 (295)
||+||.+|+++|+.|||+|++++++|++++++|++|+++|+.|.||+.+|||++++||++++++|++++|++|
T Consensus 147 TEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf 219 (220)
T KOG1666|consen 147 TEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKF 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885
No 2
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.3e-12 Score=115.56 Aligned_cols=202 Identities=15% Similarity=0.218 Sum_probs=137.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHH
Q 022587 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQ 86 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~ 86 (295)
|+.+|.+--.+ ..+++.++.++.+.....+-.+.+..++..++++...+..|+.-+...|. ..|....-|+.
T Consensus 1 m~~ly~~t~~~----~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp----~~rq~~rlr~d 72 (213)
T KOG3251|consen 1 MDALYQSTNRQ----LDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPP----KSRQAARLRVD 72 (213)
T ss_pred CchHHHHHHHH----HHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCC----CcHHHHHHHHH
Confidence 45566555544 44557777887764332566788999999999999999999987777654 32222222233
Q ss_pred HHHHHHHHHHHHHHHHhhh---------hhcchhhhccCCCCCCCCCcchhhhhhccccHHHHHHhhhhhhHHHHHHHHH
Q 022587 87 SMIKELNSYVALRKTYMNS---------LGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKR 157 (295)
Q Consensus 87 ~~~~eL~~~~~l~k~~~~~---------~~~~R~~Lf~~~~~~~~~~~~~n~~~~~~~~~rq~l~~~~~~l~~t~~~L~~ 157 (295)
....++.. ++..++.. ....|++|+++..+.+. -+...+ + +-.-.-.+.|.+
T Consensus 73 Ql~~d~~~---l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~-~~~~~~-----~----------D~el~~~d~l~~ 133 (213)
T KOG3251|consen 73 QLLEDVEH---LQTSLRTSMNRNNRREQQARERVELLDRRFTNGA-TGTSIP-----F----------DEELQENDSLKR 133 (213)
T ss_pred HHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCC-ccCCCc-----c----------hHHHHhhhHHHH
Confidence 33333322 33222111 12258888876543210 000010 1 112255678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 022587 158 SQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 158 s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~iii~~~ 236 (295)
+++.+++....|.+|+++|.+|+-.|.++++++.++-.+|+-|+.+|+-|.||+..||+|+++.++++ +|+++.+|++
T Consensus 134 s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~-~v~~yl~~~w 211 (213)
T KOG3251|consen 134 SHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILT-LVIMYLFYRW 211 (213)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998866544 4444444444
No 3
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.42 E-value=3.5e-12 Score=99.95 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 022587 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGV 228 (295)
Q Consensus 149 ~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~i 228 (295)
.+.++.|.++.+++.++.+-|..+++.|.+|+++|..++++++++++.++.|+++|+.+.|+..+||+++++.+++|+++
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~ 83 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLV 83 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 022587 229 IAIIVVKV 236 (295)
Q Consensus 229 I~iii~~~ 236 (295)
+++|+|+.
T Consensus 84 v~yI~~rR 91 (92)
T PF03908_consen 84 VLYILWRR 91 (92)
T ss_pred HHHHhhhc
Confidence 99999986
No 4
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.35 E-value=7.3e-12 Score=91.95 Aligned_cols=65 Identities=28% Similarity=0.495 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 147 ~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
.+.++.++|+++.++++||+++|.+|+.+|..|+|+|.+++++|++++++++.|+++|+.|.||.
T Consensus 2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 57789999999999999999999999999999999999999999999999999999999999984
No 5
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=99.29 E-value=5.2e-11 Score=90.35 Aligned_cols=77 Identities=18% Similarity=0.404 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHHHH
Q 022587 18 IRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVA 97 (295)
Q Consensus 18 ~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~~~ 97 (295)
|+.++.+|.+++..+... .+++|+..|++++..|+||+++|++|++|++++ |++.|..|+.+++.|+.+|+.
T Consensus 1 f~~l~~~i~~~l~~~~~~-~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~----p~s~r~~~~~kl~~yr~~l~~--- 72 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNL-SGEQRKSLIREIERDLDEAEELLKQMELEVRSL----PPSERNQYKSKLRSYRSELKK--- 72 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-----HHHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHH---
Confidence 678899999999999874 569999999999999999999999999999997 568999999999999999988
Q ss_pred HHHHH
Q 022587 98 LRKTY 102 (295)
Q Consensus 98 l~k~~ 102 (295)
+++.|
T Consensus 73 lk~~l 77 (79)
T PF05008_consen 73 LKKEL 77 (79)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 6
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=8.7e-09 Score=93.48 Aligned_cols=211 Identities=15% Similarity=0.220 Sum_probs=128.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhhcc-----CChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhchhccCCChhhhH
Q 022587 6 QMSPQLEQIHGEIRDNFRALSNGFQKLDKI-----KDSNRQTKQLE-ELTGRMRECKRLIKEMDREIKDEEARNPPEVNK 79 (295)
Q Consensus 6 ~ms~~~e~ye~e~~~l~~~l~~~~~kl~~~-----~~~~~r~~~l~-~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~ 79 (295)
.+++-|.-|+ +...+...+...+++-..+ .+.+++...++ .++..++..++++.-++ ++... ......
T Consensus 4 ~~Dp~~~v~~-e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~---~~~~~--~~ide~ 77 (235)
T KOG3202|consen 4 SEDPFFRVKN-ETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILE---RNPSK--FGIDEF 77 (235)
T ss_pred CCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHH---hCccc--ccCcHH
Confidence 3455555565 4455555555555542221 12244444444 44444444444333333 22111 111233
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhh-hhhc--chhhhccCCCCCCCCCcchhhhhhcccc-HHHHHHhhhhhhHHHHHH
Q 022587 80 QLNDEKQSMIKELNS-YVALRKTYMN-SLGN--KKVELFDMGAGVSEPTADENVQVASSMS-NQELIDAGKKTMDETDQA 154 (295)
Q Consensus 80 ~~~~r~~~~~~eL~~-~~~l~k~~~~-~~~~--~R~~Lf~~~~~~~~~~~~~n~~~~~~~~-~rq~l~~~~~~l~~t~~~ 154 (295)
.+..|. .....+.. ....+-++.. .... .|..|++.....+. ..+.....+++ .+...+...+.+++++..
T Consensus 78 El~~R~-~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~---~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~ 153 (235)
T KOG3202|consen 78 ELSRRR-RFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPNL---DEAMSRASGLDNVQEIVQLQQQMLQEQDEG 153 (235)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCCch---hhhHHHhhccCcHHHHHHHHHHHHHHHHHH
Confidence 444333 33333322 3334444443 2222 38888876443210 01112235566 477778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 022587 155 IKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCG 227 (295)
Q Consensus 155 L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~ 227 (295)
|+.....+..+..+|..+.++|..|...|+...+.++.|++-|.+..+.+..|.+ +.+++-.+|++++++++
T Consensus 154 Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~~~~~~il~l~~~ 225 (235)
T KOG3202|consen 154 LDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQCSQWCAILLLVGL 225 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 65665444444443433
No 7
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=5.5e-07 Score=80.15 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=126.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCCh-------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 022587 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDS-------------N---RQTKQLEELTGRMRECKRLIKEMDREIKDEE 70 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~-------------~---~r~~~l~~le~~l~ea~~lL~qmelE~r~l~ 70 (295)
+++-++.+-.|-..+=.++..++.+..++..+ . .=+..=.+++.-|++...+.++|.- +-..|
T Consensus 3 ~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s~ 81 (231)
T KOG3208|consen 3 SSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASSP 81 (231)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccCC
Confidence 45566666666666655665555554443221 0 1123344566667777777777773 22333
Q ss_pred cCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchhhhccCCCCCCCCCcchhhhhhccccHHHHHHhhhhhh
Q 022587 71 ARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLG--NKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTM 148 (295)
Q Consensus 71 ~~~~~~~r~~~~~r~~~~~~eL~~~~~l~k~~~~~~~--~~R~~Lf~~~~~~~~~~~~~n~~~~~~~~~rq~l~~~~~~l 148 (295)
... +.....++.+++-|..|.+......+++. .+|+.|+++.......+.+ ..++..+++ .
T Consensus 82 a~~-----aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~-----~~~~~~~e~-------~ 144 (231)
T KOG3208|consen 82 ANS-----AAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPS-----ASGFNRGEM-------Y 144 (231)
T ss_pred CCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCc-----cCCCchHHH-------H
Confidence 321 12233444444444443333322222222 2577777653222111111 122333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 022587 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFL 223 (295)
Q Consensus 149 ~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iil 223 (295)
-+...+|+++.+.++|+.+++.+|-+.|+.|+-.+.++..+|.++-..+=--+.+|.+|.+|-..|-+|+.+||.
T Consensus 145 lkE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis 219 (231)
T KOG3208|consen 145 LKEHDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVIS 219 (231)
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 366788999999999999999999999999999999999999999999999999999999999999999988765
No 8
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=3.1e-05 Score=72.86 Aligned_cols=192 Identities=15% Similarity=0.251 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcc-----CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchhhhc--c
Q 022587 44 QLEELTGRMRECKRLIKEMDREIKDEEA-----RNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLG-NKKVELF--D 115 (295)
Q Consensus 44 ~l~~le~~l~ea~~lL~qmelE~r~l~~-----~~~~~~r~~~~~r~~~~~~eL~~~~~l~k~~~~~~~-~~R~~Lf--~ 115 (295)
.+..+.+.-..++..|+.++-+.-..+. ......|.++..-.+.+....+.|.+....|..... .-+..|| +
T Consensus 83 ~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~ 162 (297)
T KOG0810|consen 83 LVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVG 162 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3444555556666777777776655542 111223445554445556656666666666644221 1123343 2
Q ss_pred CCCCCCC------CCcchhhhhhccccHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHH
Q 022587 116 MGAGVSE------PTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNE 189 (295)
Q Consensus 116 ~~~~~~~------~~~~~n~~~~~~~~~rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~ 189 (295)
+....++ ..+....+...-...++.......-.+.=.+.+.+.++.+.|-.++-.++..-...|.|+|++|...
T Consensus 163 ~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~n 242 (297)
T KOG0810|consen 163 GEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENN 242 (297)
T ss_pred CCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2111100 0000011110001011111222222334445688899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 022587 190 LDTIQFSIKKASQLVK---EIGRQVATDKCIMLFLFLIVCGVIAIIVVK 235 (295)
Q Consensus 190 l~~~d~~l~rs~r~L~---~m~Rr~~tdK~il~~iilili~iI~iii~~ 235 (295)
|....+.+.+|...++ ...|++.+.|||.+++++|+++++++++..
T Consensus 243 V~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~ 291 (297)
T KOG0810|consen 243 VENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVV 291 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcc
Confidence 9999999999998888 888888888887777666555555555443
No 9
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0017 Score=60.24 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 022587 150 ETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLI 224 (295)
Q Consensus 150 ~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iili 224 (295)
+=...+++++..+.|.-+|-.+++.-..+|.|.+.||++.|++++-++.-|...|.+..-|+..|||+|+=|+.|
T Consensus 224 ~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i 298 (311)
T KOG0812|consen 224 ERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGI 298 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 334567777888888888889999999999999999999999999999999999999999999999988766543
No 10
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.0011 Score=59.81 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHhhhchHHHHHHHHHHHH
Q 022587 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQL----VKEIGRQVATDKCIMLFLFLIVCG 227 (295)
Q Consensus 152 ~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~----L~~m~Rr~~tdK~il~~iilili~ 227 (295)
.+-|.+..+++.|.-++-..+.+...+|.|-++-+.+.+.+...++..+... +++ +|.+..+||+-|+|++++++
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~ 262 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIII 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHH
Confidence 3557888899999999999999999999999999999999999988887644 556 78888889888888887777
Q ss_pred HHHHHHHHH
Q 022587 228 VIAIIVVKV 236 (295)
Q Consensus 228 iI~iii~~~ 236 (295)
+|++++++.
T Consensus 263 viv~vv~~v 271 (280)
T COG5074 263 VIVVVVFKV 271 (280)
T ss_pred HHHHHHhcc
Confidence 777777766
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0052 Score=57.16 Aligned_cols=93 Identities=15% Similarity=0.275 Sum_probs=72.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---hhhchHHHHH
Q 022587 144 GKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ---VATDKCIMLF 220 (295)
Q Consensus 144 ~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr---~~tdK~il~~ 220 (295)
....+++-.+.+.+.++-+.|.++|-.+-..-.++|.++++.|.+.++.+..++..|++.|++=++. ...-+|++.+
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~ 250 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLL 250 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhH
Confidence 3445566778888999999999999999999999999999999999999999999999998876544 3333455555
Q ss_pred HHHHHHHHHHHHHHHH
Q 022587 221 LFLIVCGVIAIIVVKV 236 (295)
Q Consensus 221 iilili~iI~iii~~~ 236 (295)
++++++++|++++|.+
T Consensus 251 v~~~v~lii~l~i~~~ 266 (269)
T KOG0811|consen 251 VGGPVGLIIGLIIAGI 266 (269)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5555556666666654
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=97.89 E-value=0.0001 Score=52.70 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022587 145 KKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (295)
Q Consensus 145 ~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~ 206 (295)
.+.+++.++.|.+..+.+.++.++|.++...+..|.+.|.++.+.++.++..+..+.+-|+.
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999999999999999999999999988764
No 13
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.017 Score=53.93 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=59.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 022587 144 GKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLF 220 (295)
Q Consensus 144 ~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~ 220 (295)
+.+...+=...+....+.+.|-.+|-.+...-...|.-.++|++=.++.|...++.|.+.|.+..+--..+|-+.|+
T Consensus 209 ~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i 285 (305)
T KOG0809|consen 209 NEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVI 285 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEeh
Confidence 44444455556666777777777777777778889999999999999999999999999998887766555433333
No 14
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.00039 Score=56.29 Aligned_cols=78 Identities=10% Similarity=0.148 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 022587 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCG 227 (295)
Q Consensus 149 ~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~ 227 (295)
.+.++.++..+.-+---+.+..+|..+.+.|+..|+++.+.+|.+.+-|+.+-.-++.|+|+ -.-++.+|.++.++|+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVA 109 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHH
Confidence 34556677777888888899999999999999999999999999999999999999999999 3445444444443333
No 15
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=97.50 E-value=0.0016 Score=46.75 Aligned_cols=61 Identities=13% Similarity=0.236 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 151 TDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 151 t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
.++.|......+.+..+++.++..++..|.+.|+++.+.++.+...+.++.+-|..+.+..
T Consensus 2 ~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 2 RDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577899999999999999999999999999999999999999999999999999887753
No 16
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.00082 Score=62.58 Aligned_cols=73 Identities=26% Similarity=0.341 Sum_probs=65.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 137 NQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 137 ~rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
...+-........++..+..++.+.+.|+++.|..|+..|..|+|||.+|...++.++.++.++.+.|..+..
T Consensus 63 ~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 63 VDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444455666778899999999999999999999999999999999999999999999999999999988764
No 17
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.054 Score=50.27 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHhhhchHHHHHHHH
Q 022587 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI-GRQVATDKCIMLFLFL 223 (295)
Q Consensus 148 l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m-~Rr~~tdK~il~~iil 223 (295)
..+=++.+.+..+-+.|..+|-.+...-..+|.+++++++-.+..|..+++.|++-|... ..+-.+.||-+|++++
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Lli 266 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLI 266 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHH
Confidence 445567788888899999999999999999999999999999999999999999876654 4445667777766543
No 18
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.31 E-value=0.0087 Score=46.15 Aligned_cols=82 Identities=12% Similarity=0.255 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 022587 153 QAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAII 232 (295)
Q Consensus 153 ~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~ii 232 (295)
+.+...+..+++|.++=.+-++.+-+..|.|+...++-++....-..=.+.-+.+.|++.-.++-+++++++++++++++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 45777888888999888888999999999999999988888888777777777777777655555555544444444433
Q ss_pred HH
Q 022587 233 VV 234 (295)
Q Consensus 233 i~ 234 (295)
++
T Consensus 83 i~ 84 (89)
T PF00957_consen 83 II 84 (89)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 19
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.28 E-value=0.08 Score=48.63 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=59.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 022587 137 NQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKC 216 (295)
Q Consensus 137 ~rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~ 216 (295)
-...+.++...+++-.+.+- .++..-++-.......|......|.++...++.--+.++++..-|+.+.++... |
T Consensus 154 ~e~~l~~~~~~QE~L~~em~---~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~ 228 (251)
T PF09753_consen 154 LEKILQHHRNLQEDLTEEML---SLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--C 228 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--H
Confidence 34445555555555554444 444455555666777899999999999999999999999999999999776544 6
Q ss_pred HHHHHHHHH
Q 022587 217 IMLFLFLIV 225 (295)
Q Consensus 217 il~~iilil 225 (295)
++|++++++
T Consensus 229 ~~~~~i~~v 237 (251)
T PF09753_consen 229 WTWLMIFVV 237 (251)
T ss_pred HHHHHHHHH
Confidence 666655433
No 20
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0076 Score=49.02 Aligned_cols=75 Identities=9% Similarity=0.261 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHhhhchHHHHHHHHHHH
Q 022587 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKAS----QLVKEIGRQVATDKCIMLFLFLIVC 226 (295)
Q Consensus 152 ~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~----r~L~~m~Rr~~tdK~il~~iilili 226 (295)
++++++++..++|+.+|=.+-.+..-+-.|+|....++-+.....-..=+ ++=+.|--+-.+-+.|++++++|++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l 106 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILL 106 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888888888777766655433 4444444444444444444444333
No 21
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=97.04 E-value=0.0056 Score=42.82 Aligned_cols=57 Identities=18% Similarity=0.342 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022587 150 ETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (295)
Q Consensus 150 ~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~ 206 (295)
+..+.|....+.+.+..+++.++...+..|.+.|+++.+.++.+...++.+.+-|++
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778999999999999999999999999999999999999999999999987764
No 22
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.27 Score=46.51 Aligned_cols=99 Identities=10% Similarity=0.176 Sum_probs=75.9
Q ss_pred cHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 136 SNQELIDAGKKT----MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 136 ~~rq~l~~~~~~----l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
.+.|++..-++. +++..+....+++.+.|+..+-.-..+.+-.|-+.|+.+++...++..+++.++.-|+...++.
T Consensus 211 e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~ 290 (316)
T KOG3894|consen 211 EQVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNN 290 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhc
Confidence 455555554444 3444566777888899999999999999999999999999999999999999999999999998
Q ss_pred hhchHHHHHHHHHHHHHHHHHHH
Q 022587 212 ATDKCIMLFLFLIVCGVIAIIVV 234 (295)
Q Consensus 212 ~tdK~il~~iilili~iI~iii~ 234 (295)
...+.++.+.++++-.+++++-|
T Consensus 291 ~~~r~~~lf~llvlsf~lLFldw 313 (316)
T KOG3894|consen 291 GGLRVFLLFFLLVLSFSLLFLDW 313 (316)
T ss_pred ccchhHHHHHHHHHHHHHHHHhh
Confidence 77776665555544444444333
No 23
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=0.48 Score=44.29 Aligned_cols=66 Identities=15% Similarity=0.374 Sum_probs=58.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 022587 142 DAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI 207 (295)
Q Consensus 142 ~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m 207 (295)
......-++.+.-|+....++...+.+|.+...+|..|.++|.++++.+++.+..|..+++-++++
T Consensus 207 q~~~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL 272 (273)
T KOG3065|consen 207 QTEPAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL 272 (273)
T ss_pred ccCChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 344445567889999999999999999999999999999999999999999999999999877754
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.32 E-value=1.1 Score=40.27 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 022587 168 VGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVV 234 (295)
Q Consensus 168 iG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~iii~ 234 (295)
-..+...+|..++++| ...+......+......+....+.. .-++++++.+++++++|+-+|+
T Consensus 129 ~~~~~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~~~~~-~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 129 QSDSVINGLKEENQKL---KNQLIVAQKKVDAANLQLDDKQRTI-IMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHchHHHHHHHHHHHHh
Confidence 3444445566665555 4555556666666666666666665 3466777777666666555554
No 25
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.68 E-value=5.7 Score=36.57 Aligned_cols=189 Identities=14% Similarity=0.241 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhccC--------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc---CCChh
Q 022587 8 SPQLEQIHGEIRDNFRALSNGFQKLDKIK--------DSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEA---RNPPE 76 (295)
Q Consensus 8 s~~~e~ye~e~~~l~~~l~~~~~kl~~~~--------~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~---~~~~~ 76 (295)
...++.+|.++..+..++...-.+..... +.+.-......+...+......|..+-.++..+.. ..|+.
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~ 123 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSE 123 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 34556666666666555544443332211 22333344455555555555555555555544433 33444
Q ss_pred hhHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhcc-----h-hhhccCCCCCCCCCcchhhhhhccccHHHHHHhhhhhh
Q 022587 77 VNKQLNDEKQSMIKELNS--YVALRKTYMNSLGNK-----K-VELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTM 148 (295)
Q Consensus 77 ~r~~~~~r~~~~~~eL~~--~~~l~k~~~~~~~~~-----R-~~Lf~~~~~~~~~~~~~n~~~~~~~~~rq~l~~~~~~l 148 (295)
.-.......+.|.+++.. |...+......+..+ | ...|.... . ++. .-.-.-+..+......+
T Consensus 124 ~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~------~-~~~--~l~~~i~~~L~~~~~kL 194 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQ------Q-ENE--SLAEAIRDDLNDYNAKL 194 (264)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHH------H-hhH--HHHHHHHHHHHHHHHHH
Confidence 444445566666666644 333322222211111 1 12222111 0 010 00012344555566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 022587 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVK 205 (295)
Q Consensus 149 ~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~ 205 (295)
.+..+.|+++...+.+++.+-...-..|..=.++..++.+.-..+...|..|+.+|.
T Consensus 195 ~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 195 QDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888877777887777777777776667777777766666666666665554
No 26
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=93.06 E-value=3.1 Score=31.74 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=34.7
Q ss_pred HHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 022587 173 ATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVV 234 (295)
Q Consensus 173 l~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~iii~ 234 (295)
+++|..+.+.|........ +.|+++=+.|..+-+.-.+++++++++++++|+++++
T Consensus 33 L~~L~~kt~~L~~~a~~F~------k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~~ 88 (89)
T PF00957_consen 33 LEELEDKTEELSDNAKQFK------KNAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVIC 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHh
Confidence 4555555555555444443 3555556666767777788888877777777666553
No 27
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=6.7 Score=35.39 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=24.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 139 ELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQT 172 (295)
Q Consensus 139 q~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~i 172 (295)
......+.+|-..+++|.++...+.+.-.|+.+|
T Consensus 114 ~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ET 147 (220)
T KOG1666|consen 114 NISADQRARLLQNTERLERSTDRLKDSQRIALET 147 (220)
T ss_pred ccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHH
Confidence 3445566777788888888888888877777764
No 28
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=92.24 E-value=0.16 Score=35.45 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 022587 203 LVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 203 ~L~~m~Rr~~tdK~il~~iilili~iI~iii~~~ 236 (295)
..+.+.||..+||..+++++++++.+++.++.-.
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~ 37 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPF 37 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999998887766665555555544
No 29
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=90.59 E-value=27 Score=37.47 Aligned_cols=43 Identities=30% Similarity=0.531 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHH
Q 022587 47 ELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNS 94 (295)
Q Consensus 47 ~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~ 94 (295)
++...++++++.+++++.....+- ..-.+++..++..+.+|+.
T Consensus 243 ~l~~~~~~~~~~L~~v~~~~~~L~-----~~~~qL~~~L~~vK~~L~~ 285 (806)
T PF05478_consen 243 DLAQAMQETKELLQNVNSSLKDLQ-----EYQSQLRDGLRGVKRDLNN 285 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 333388888888888887666652 2344566666666666655
No 30
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=89.89 E-value=3 Score=30.93 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=30.3
Q ss_pred HHhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHHHH
Q 022587 182 QMGRIVNELDTIQFSIKKAS-QLVKEIGRQVATDKCIMLFLFLIV 225 (295)
Q Consensus 182 qL~r~~~~l~~~d~~l~rs~-r~L~~m~Rr~~tdK~il~~iilil 225 (295)
+...+.++|++++..+.... .+-.+++|++-+|--|+|++++-+
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Gl 57 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGL 57 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHH
Confidence 34455566666666666555 446788999999999999965533
No 31
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=89.30 E-value=4 Score=30.94 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=31.4
Q ss_pred HhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHHHHHHH
Q 022587 183 MGRIVNELDTIQFSIKKAS-QLVKEIGRQVATDKCIMLFLFLIVCGV 228 (295)
Q Consensus 183 L~r~~~~l~~~d~~l~rs~-r~L~~m~Rr~~tdK~il~~iilili~i 228 (295)
...+.++||+++..+..+. .+-.+.++++-+|--|+|++++-++++
T Consensus 17 ~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~ 63 (77)
T PRK01026 17 FKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIV 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHH
Confidence 4455666666666666655 446788899999999999966544333
No 32
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=85.69 E-value=8 Score=28.70 Aligned_cols=40 Identities=23% Similarity=0.437 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHH
Q 022587 184 GRIVNELDTIQFSIKKAS-QLVKEIGRQVATDKCIMLFLFL 223 (295)
Q Consensus 184 ~r~~~~l~~~d~~l~rs~-r~L~~m~Rr~~tdK~il~~iil 223 (295)
..+.++||+++..+.... .+-.+.++++-+|--|+|++++
T Consensus 15 ~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~vi 55 (70)
T TIGR01149 15 NEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVI 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Confidence 445555666666665554 4467788899999999998655
No 33
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=85.66 E-value=11 Score=27.67 Aligned_cols=14 Identities=14% Similarity=0.047 Sum_probs=7.5
Q ss_pred hchHHHHHHHHHHH
Q 022587 213 TDKCIMLFLFLIVC 226 (295)
Q Consensus 213 tdK~il~~iilili 226 (295)
..||++.+++-.++
T Consensus 49 n~kW~~r~iiGaiI 62 (71)
T PF10779_consen 49 NTKWIWRTIIGAII 62 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 44777665544333
No 34
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=84.96 E-value=2.6 Score=30.38 Aligned_cols=34 Identities=9% Similarity=0.254 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 022587 201 SQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVV 234 (295)
Q Consensus 201 ~r~L~~m~Rr~~tdK~il~~iilili~iI~iii~ 234 (295)
++...+-.+|+.+.+.|++++++++++++++..|
T Consensus 25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~ 58 (59)
T PF09889_consen 25 REEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666777788888877766665555443
No 35
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=84.79 E-value=0.7 Score=38.15 Aligned_cols=19 Identities=0% Similarity=0.301 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022587 215 KCIMLFLFLIVCGVIAIIV 233 (295)
Q Consensus 215 K~il~~iilili~iI~iii 233 (295)
||++++||+++++|+++++
T Consensus 1 RW~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLF 19 (130)
T ss_pred CeeeHHHHHHHHHHHHHHH
Confidence 4555655544444444333
No 36
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=83.92 E-value=11 Score=28.03 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhchHHHHHHHH
Q 022587 203 LVKEIGRQVATDKCIMLFLFL 223 (295)
Q Consensus 203 ~L~~m~Rr~~tdK~il~~iil 223 (295)
+-..+++++-+|--|+|++++
T Consensus 38 v~Qr~GkkiGRDIGILYGlVI 58 (75)
T COG4064 38 VYQRIGKKIGRDIGILYGLVI 58 (75)
T ss_pred HHHHHHHHhcchHHHHHHHHH
Confidence 346788899999999998544
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.70 E-value=81 Score=35.36 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=10.7
Q ss_pred CCCCCCCCccccccccc
Q 022587 273 DIPGLAPPAPARRLLSL 289 (295)
Q Consensus 273 ~~~~~~~~~~~~~~~~~ 289 (295)
.-| ..||-|.-||...
T Consensus 684 l~~-i~tpenvPRLfDL 699 (1293)
T KOG0996|consen 684 LAP-ITTPENVPRLFDL 699 (1293)
T ss_pred cCC-CCCCCCcchHhhh
Confidence 344 7778888887643
No 38
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.21 E-value=4.2 Score=36.31 Aligned_cols=60 Identities=7% Similarity=0.117 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 152 ~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
-+.|.+.+..+.|...+=.+-.+.+-.-.|.|+=.-++.....++-..=++.-+.+.|.+
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~m 183 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKM 183 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHH
Confidence 567888889999999998888888888888888777777777776666666666666664
No 39
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=82.81 E-value=34 Score=31.24 Aligned_cols=80 Identities=11% Similarity=0.172 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-HHHHHHHHHHHHHHH
Q 022587 159 QMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLF-LIVCGVIAIIVVKVL 237 (295)
Q Consensus 159 ~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~ii-lili~iI~iii~~~~ 237 (295)
...+..-++...+-..-|..-++.+.++...+|.-...|+-.+.-+....+.-.-+++.+..|| +|+.+|..|++..++
T Consensus 161 l~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqif 240 (244)
T KOG2678|consen 161 LKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIF 240 (244)
T ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444556666677799999999999999999999998888888888777665554443333 333444455555554
Q ss_pred h
Q 022587 238 T 238 (295)
Q Consensus 238 ~ 238 (295)
+
T Consensus 241 k 241 (244)
T KOG2678|consen 241 K 241 (244)
T ss_pred h
Confidence 3
No 40
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.24 E-value=41 Score=30.90 Aligned_cols=87 Identities=17% Similarity=0.313 Sum_probs=48.8
Q ss_pred ccHHHHHHhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 135 MSNQELIDAGKKTMDETDQAIKRSQMVVE---QTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 135 ~~~rq~l~~~~~~l~~t~~~L~~s~r~l~---eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
.-+++++....+.++.-..++.+.+.++. +.-+.-..+ |+..-.-+++++.+++.....+..-.+ |...-
T Consensus 141 ~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~l---lDdl~~e~d~t~srl~~~~~~l~~v~~----~~s~~ 213 (235)
T KOG3202|consen 141 QLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRL---LDDLDNEMDRTESRLDRVMKRLAKVNR----MASQC 213 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccc
Confidence 34566666656666555555555554443 333333334 455667788888888887777776665 44443
Q ss_pred hhchHHHHHHHHHHHHHH
Q 022587 212 ATDKCIMLFLFLIVCGVI 229 (295)
Q Consensus 212 ~tdK~il~~iilili~iI 229 (295)
..+|++.+++.++++++
T Consensus 214 -~~~~~il~l~~~~~lvv 230 (235)
T KOG3202|consen 214 -SQWCAILLLVGLLLLVV 230 (235)
T ss_pred -cchhHHHHHHHHHHHHH
Confidence 33555555444444333
No 41
>PRK11281 hypothetical protein; Provisional
Probab=81.55 E-value=97 Score=34.78 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 167 EVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 167 eiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
++-.+..+.|..|++.+..+..+-..+...+++..+..+.+.-++
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778999999999999999999999999998888776654
No 42
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.36 E-value=50 Score=31.35 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 022587 150 ETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVI 229 (295)
Q Consensus 150 ~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI 229 (295)
+-..++.+.+.+-.++..+=..=.+.++.=--.+.++.+.+..-.+++++|.+.-+ -+|+...=.+|.++|+++++++.
T Consensus 210 ~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qk-kaRK~k~i~ii~~iii~~v~v~~ 288 (297)
T KOG0810|consen 210 KLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQK-KARKWKIIIIIILIIIIVVLVVV 288 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhceeeeehHHHHHHHHHhhh
Confidence 44444555555544444444444444444445667788888888888888866544 45666666777777776666665
Q ss_pred HHHHH
Q 022587 230 AIIVV 234 (295)
Q Consensus 230 ~iii~ 234 (295)
+...|
T Consensus 289 i~~~~ 293 (297)
T KOG0810|consen 289 IVVPL 293 (297)
T ss_pred hcccc
Confidence 55443
No 43
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=80.52 E-value=50 Score=30.81 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 022587 215 KCIMLFLFLIVCGVIAIIVVKVLTHIKSQ 243 (295)
Q Consensus 215 K~il~~iilili~iI~iii~~~~~~~~~~ 243 (295)
.+.-++++++++++=++.|+.++...+..
T Consensus 262 ~~~~~~i~llfi~iel~Pv~~Kl~~~~~~ 290 (301)
T PF14362_consen 262 LLASLFIFLLFIAIELLPVLFKLLSGKGP 290 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 34445556666777666666665554443
No 44
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.99 E-value=1.4e+02 Score=33.85 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=20.8
Q ss_pred HHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 175 TLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 175 ~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
++..=.+.|..+++.+......+..+.+.|..+.++|
T Consensus 1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~ 1628 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRM 1628 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666666666666655554
No 45
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=76.40 E-value=33 Score=26.41 Aligned_cols=80 Identities=6% Similarity=0.060 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 022587 150 ETDQAIKRSQMVVEQTIEVGTQTATTLKGQ-TDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGV 228 (295)
Q Consensus 150 ~t~~~L~~s~r~l~eTeeiG~~il~~L~~Q-rEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~i 228 (295)
+...-..+...++.++-+.+...+.++..+ .+.+..+++.+.+.-..+...-+..-.-....+.++=+..+.+.+.+++
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG~ 85 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIAAGVGF 85 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 344445566666666666677777766665 4566777777777776665554443333334445554444444433433
Q ss_pred H
Q 022587 229 I 229 (295)
Q Consensus 229 I 229 (295)
+
T Consensus 86 l 86 (94)
T PF05957_consen 86 L 86 (94)
T ss_pred H
Confidence 3
No 46
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=75.99 E-value=3.9 Score=33.78 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 022587 217 IMLFLFLIVCGVIAIIVVKVLTHIKS 242 (295)
Q Consensus 217 il~~iilili~iI~iii~~~~~~~~~ 242 (295)
|.+++++-++++|++|+|.+-+++|.
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444456666666665555544
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.19 E-value=71 Score=29.70 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCC--hhhhHHHHH
Q 022587 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIK-DSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNP--PEVNKQLND 83 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~-~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~--~~~r~~~~~ 83 (295)
.+..-..|+.++..+-..|......-.++. .-+.-...+.++..++++.......++.|+..+-+..+ ...+..+.+
T Consensus 45 ~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 45 VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp -HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 455667788877766555544433222210 22334455666666777666666666666665532111 123556777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 022587 84 EKQSMIKELNSYVALRKTYMNSL 106 (295)
Q Consensus 84 r~~~~~~eL~~~~~l~k~~~~~~ 106 (295)
+++.+..+|+- +++.+...+
T Consensus 125 ~i~~L~eEl~f---l~~~heeEi 144 (312)
T PF00038_consen 125 QIQSLKEELEF---LKQNHEEEI 144 (312)
T ss_dssp HHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHH---HHhhhhhhh
Confidence 77777777765 555554433
No 48
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=73.70 E-value=2.3 Score=42.96 Aligned_cols=32 Identities=16% Similarity=0.417 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 022587 184 GRIVNELDTIQFSIKKASQLVKEIGRQVATDK 215 (295)
Q Consensus 184 ~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK 215 (295)
..+.+.+.+..+-|++|+++|..+.....++.
T Consensus 441 ~~vn~sL~~A~~~L~~Sn~iL~~v~~~~~~~~ 472 (490)
T PF00523_consen 441 GQVNNSLNNAKDLLDKSNQILDSVNPGISSNS 472 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence 33444444444444444444444444443333
No 49
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=73.42 E-value=1.6e+02 Score=33.05 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=44.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 144 GKKTMDETDQAIKRSQMVVEQT----------IEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 144 ~~~~l~~t~~~L~~s~r~l~eT----------eeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
+.+++.++...++++.+...+. -++-.+..+.|..|++.+..+..+-..+...+.+.++..+.+--++
T Consensus 232 n~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 232 NSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555543322 2344555667888888888888888888888888888887776664
No 50
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=73.03 E-value=1.1e+02 Score=30.97 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhch--HHHHHHHHHH
Q 022587 192 TIQFSIKKASQLVKEIGRQVATDK--CIMLFLFLIV 225 (295)
Q Consensus 192 ~~d~~l~rs~r~L~~m~Rr~~tdK--~il~~iilil 225 (295)
...+.++...--+..|-|+.-.-+ |++|++++-+
T Consensus 505 ~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHL 540 (554)
T KOG4677|consen 505 AARSKVDKGSAELEKILRLLPSARIFWKNYMALLHL 540 (554)
T ss_pred HHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 333444444455666777753333 4444444433
No 51
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=72.73 E-value=70 Score=30.68 Aligned_cols=74 Identities=8% Similarity=0.224 Sum_probs=59.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 138 QELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 138 rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
++.+....+.+......|...+..+.+.++-=...-.++........+....+..+...|.+|.+++..++.--
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 55566677788888888888888888877666666666766677788888999999999999999998887653
No 52
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=72.60 E-value=4.8 Score=29.70 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022587 216 CIMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~~ 236 (295)
++|++|+++++++|++.+|.+
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555554
No 53
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.90 E-value=53 Score=29.75 Aligned_cols=66 Identities=8% Similarity=0.114 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 022587 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCI 217 (295)
Q Consensus 152 ~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~i 217 (295)
..-+......+.++..+-+..++++..-.|.|......-.+....-..-.+..+.|.++..-++|.
T Consensus 133 ~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a 198 (216)
T KOG0862|consen 133 QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA 198 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456666777778888888888999998888888877777776666667777788888888777765
No 54
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=71.83 E-value=9.4 Score=29.73 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.7
Q ss_pred cCCCCCCCCCCCCCCC
Q 022587 264 VNPNNKDIRDIPGLAP 279 (295)
Q Consensus 264 ~~~~~~~~~~~~~~~~ 279 (295)
.||++.-|....||.+
T Consensus 72 ~~P~~~~~~~~~GL~~ 87 (94)
T PF05393_consen 72 LEPQNLQIHRDDGLRN 87 (94)
T ss_pred cCCCcccccccCCcce
Confidence 4999999999999865
No 55
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=70.60 E-value=13 Score=25.40 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=16.5
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhchHHHHHHHH
Q 022587 193 IQFSIKKASQL-VKEIGRQVATDKCIMLFLFL 223 (295)
Q Consensus 193 ~d~~l~rs~r~-L~~m~Rr~~tdK~il~~iil 223 (295)
+.+.+.||+.+ +.--+|+-.++-++=+..|+
T Consensus 8 trsairras~ie~~~qar~~lq~lfvnf~lil 39 (52)
T TIGR01294 8 TRSAIRRASTIEMPQQARQNLQNLFINFCLIL 39 (52)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 45666666654 44555665555544443333
No 56
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=70.58 E-value=2.3e+02 Score=33.54 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=58.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 141 IDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 141 l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
.....+.+....-.+++....+....+.-....-.|..||.-+.|+...+..+...+..+.+-+..+-+..
T Consensus 393 ~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~ 463 (1822)
T KOG4674|consen 393 YSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKEL 463 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777888888888888888888889999999999999999999999999988888887764
No 57
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.14 E-value=61 Score=27.63 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=37.5
Q ss_pred hhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHH
Q 022587 28 GFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKEL 92 (295)
Q Consensus 28 ~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL 92 (295)
.+..|.+....++-...+..++..+.+.+.-|..+.-.... .+++.+.++......+.+++
T Consensus 101 eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~----vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 101 ELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP----VSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHHHHH
Confidence 34444443444777888888888888888888877753333 24555555554444444443
No 58
>PHA03049 IMV membrane protein; Provisional
Probab=69.41 E-value=6 Score=29.10 Aligned_cols=20 Identities=15% Similarity=0.449 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022587 217 IMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 217 il~~iilili~iI~iii~~~ 236 (295)
+|++|+++++++|++.||.+
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44455554555555555544
No 59
>PRK02224 chromosome segregation protein; Provisional
Probab=69.20 E-value=1.7e+02 Score=31.46 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 10 QLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEM 62 (295)
Q Consensus 10 ~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qm 62 (295)
.++.++.++..+-..+...-.+++.++.-.++...+..+...+++++++++..
T Consensus 476 ~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~ 528 (880)
T PRK02224 476 RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAER 528 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333332222333455566666666666654443
No 60
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=68.63 E-value=95 Score=28.38 Aligned_cols=83 Identities=22% Similarity=0.323 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH-----------H
Q 022587 164 QTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAI-----------I 232 (295)
Q Consensus 164 eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~i-----------i 232 (295)
+|+++-..+..++..+++-.++.-+++.. ...+.++..+.|. +.-..|++|+++|+++..+ +
T Consensus 110 ~tde~k~~~~~ei~k~r~e~~~ml~evK~---~~E~y~k~~k~~~----~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ 182 (230)
T PF03904_consen 110 DTDELKNIAQNEIKKVREENKSMLQEVKQ---SHEKYQKRQKSMY----KGIGAMLFVFMLFALVMTIGSDFMDFLHVDH 182 (230)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhcccchhhhhHHH
Confidence 67777777888888888666666655444 3444444444443 3334444444444333210 2
Q ss_pred HHH-HHhhccccccchhhhHHH
Q 022587 233 VVK-VLTHIKSQHNFQQWQFSI 253 (295)
Q Consensus 233 i~~-~~~~~~~~~~~~~~~~~~ 253 (295)
+|. +...||.-|+|-.++.-+
T Consensus 183 ly~~ia~~ik~se~~~~~lwyi 204 (230)
T PF03904_consen 183 LYKAIASKIKASESFWTYLWYI 204 (230)
T ss_pred HHHHHHHHHhhhHhHHHHHHHH
Confidence 233 556678888876554433
No 61
>PRK11637 AmiB activator; Provisional
Probab=68.49 E-value=1.3e+02 Score=29.72 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 43 KQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 43 ~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
..+..++.+|..+..-|...+.++..+
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~ 101 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQL 101 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444443
No 62
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=68.18 E-value=52 Score=28.79 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHH---HHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHH
Q 022587 10 QLEQIHGEIRDNFR---ALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQ 86 (295)
Q Consensus 10 ~~e~ye~e~~~l~~---~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~ 86 (295)
.++.||++|+++-+ +|..-+++++. +-+.|.+-++.+..--...+.||+-...--+-+|-.+ +..+..|++
T Consensus 87 ~v~r~E~~fqeLn~ka~aLk~iLSriPd--EinDR~~FLeTIK~IASaIKkLLd~vN~v~~~~p~t~----~~AvE~rKk 160 (207)
T KOG4025|consen 87 IVSRYEQDFQELNKKAIALKRILSRIPD--EINDRHAFLETIKLIASAIKKLLDAVNAVYRIVPLTA----QPAVEKRKK 160 (207)
T ss_pred hhcCCCccHHHHHHHHHHHHHHHHhCcH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cHHHHHHHH
Confidence 46788998888863 33334445433 3377888777777666666777776665455554332 344566766
Q ss_pred HHHHHHHHHHHHHHHH
Q 022587 87 SMIKELNSYVALRKTY 102 (295)
Q Consensus 87 ~~~~eL~~~~~l~k~~ 102 (295)
++.+=-++|..-.|+|
T Consensus 161 EFVkYSK~FS~TLKtY 176 (207)
T KOG4025|consen 161 EFVKYSKRFSNTLKTY 176 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6665445555555555
No 63
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.07 E-value=1.1e+02 Score=28.76 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=17.0
Q ss_pred HHHhhhHHHhhHHH-HHHHHHHHHHHHHHHHHH
Q 022587 175 TLKGQTDQMGRIVN-ELDTIQFSIKKASQLVKE 206 (295)
Q Consensus 175 ~L~~QrEqL~r~~~-~l~~~d~~l~rs~r~L~~ 206 (295)
++=.+--.|.+=.. .||.|++++..+.-.+..
T Consensus 194 ~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveq 226 (269)
T KOG0811|consen 194 EIFKDLGSLVHEQGELVDSIEANVENASVNVEQ 226 (269)
T ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH
Confidence 33333333433333 667777777777655543
No 64
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.38 E-value=2.5e+02 Score=32.03 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 022587 80 QLNDEKQSMIKELNS 94 (295)
Q Consensus 80 ~~~~r~~~~~~eL~~ 94 (295)
.+..++..+..++..
T Consensus 885 ~le~~L~el~~el~~ 899 (1311)
T TIGR00606 885 QFEEQLVELSTEVQS 899 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 65
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=64.92 E-value=89 Score=28.51 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=24.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--chHHHHHHHHHHHH
Q 022587 181 DQMGRIVNELDTIQFSIKKASQLVKEIGRQVAT--DKCIMLFLFLIVCG 227 (295)
Q Consensus 181 EqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~t--dK~il~~iilili~ 227 (295)
..|..-...|+.+...+++...-++.-+.|+.. .|..-|+..+++++
T Consensus 188 ~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~ 236 (251)
T PF09753_consen 188 QILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFV 236 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 344444555666666666666666666666432 24444444443333
No 66
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=64.68 E-value=34 Score=27.37 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=30.8
Q ss_pred HHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 174 TTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 174 ~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
+....|.|+|.....+.......|..-...|..|..|+
T Consensus 60 e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 60 EKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888888888888888885
No 67
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=64.58 E-value=46 Score=32.13 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=28.0
Q ss_pred cccccchhhhHHHHHhhccCccccCCCCCCCCC
Q 022587 241 KSQHNFQQWQFSIFCLLSMNFQVVNPNNKDIRD 273 (295)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (295)
=-+..|..|+---||||-.+--+.--|+-.|++
T Consensus 149 ~~d~~~~f~lvwyY~tLtiRE~IL~~NGS~Ik~ 181 (330)
T PF07851_consen 149 VLDQLFNFLLVWYYCTLTIRESILIVNGSRIKG 181 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchH
Confidence 346677888889999999999999999988874
No 68
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=64.54 E-value=8.5 Score=29.53 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 022587 215 KCIMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 215 K~il~~iilili~iI~iii~~~ 236 (295)
..++.++++++++|+.+|+|.+
T Consensus 4 l~i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 4 LEILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp ----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666655
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=64.25 E-value=2.6e+02 Score=31.82 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022587 43 KQLEELTGRMRECKRLIKEMDR 64 (295)
Q Consensus 43 ~~l~~le~~l~ea~~lL~qmel 64 (295)
....++.+.-++|+.+..+++.
T Consensus 1546 ~L~s~A~~a~~~A~~v~~~ae~ 1567 (1758)
T KOG0994|consen 1546 NLQSEAERARSRAEDVKGQAED 1567 (1758)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3444455555555555555554
No 70
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=63.29 E-value=56 Score=25.29 Aligned_cols=49 Identities=18% Similarity=0.539 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHH
Q 022587 44 QLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNS 94 (295)
Q Consensus 44 ~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~ 94 (295)
.|..++.++..|++-|+.++.-++... .+|+.|..+...+....+.+..
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~e--Ls~e~R~~lE~E~~~l~~~l~~ 54 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRE--LSPEARRSLEKELNELKEKLEN 54 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccC--CChHHHHHHHHHHHHHHHHhhc
Confidence 455666677777777777666555432 2455555555555554444444
No 71
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=63.06 E-value=11 Score=34.22 Aligned_cols=41 Identities=17% Similarity=0.427 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022587 202 QLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVLTHIKS 242 (295)
Q Consensus 202 r~L~~m~Rr~~tdK~il~~iilili~iI~iii~~~~~~~~~ 242 (295)
|-+..+++|.+..|+++++|+.+++++.++++-..-+.+..
T Consensus 196 rKvSsvGsrfar~Ra~~ffilal~~avta~~lt~gT~s~a~ 236 (275)
T KOG4684|consen 196 RKVSSVGSRFARRRALLFFILALTVAVTAVILTMGTASVAP 236 (275)
T ss_pred cchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 55778999999999999998877776666555443333333
No 72
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=62.87 E-value=34 Score=29.98 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 43 KQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMN 104 (295)
Q Consensus 43 ~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~~~l~k~~~~ 104 (295)
..+..++.++.+....+..|+.|++.+.+.- .-.++....++++++...|....+.+++
T Consensus 86 ~~i~~l~ek~q~l~~t~s~veaEik~L~s~L---t~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 86 GKIVALTEKVQSLQQTCSYVEAEIKELSSAL---TTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999996632 2345777777777777776655555544
No 73
>PF12669 P12: Virus attachment protein p12 family
Probab=62.16 E-value=7.1 Score=27.91 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=10.8
Q ss_pred HHHHHHHHHH-HHHHHhhcccc
Q 022587 223 LIVCGVIAII-VVKVLTHIKSQ 243 (295)
Q Consensus 223 lili~iI~ii-i~~~~~~~~~~ 243 (295)
+|++++++++ ++++++..|.+
T Consensus 6 ~Ii~~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 6 IIILAAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 3344444444 46666665554
No 74
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=61.63 E-value=15 Score=25.05 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=12.7
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhchHHHH
Q 022587 193 IQFSIKKASQL-VKEIGRQVATDKCIML 219 (295)
Q Consensus 193 ~d~~l~rs~r~-L~~m~Rr~~tdK~il~ 219 (295)
+.+.+.||+.+ +..=+|+-.++-++=+
T Consensus 8 trsairrastiev~~qa~qnlqelfvnf 35 (52)
T PF04272_consen 8 TRSAIRRASTIEVPQQARQNLQELFVNF 35 (52)
T ss_dssp HHHHHHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 44555665543 3334455445444433
No 75
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=61.44 E-value=2.5e+02 Score=30.75 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 022587 187 VNELDTIQFSI 197 (295)
Q Consensus 187 ~~~l~~~d~~l 197 (295)
...+..+...+
T Consensus 475 ~~~l~~l~~~l 485 (1164)
T TIGR02169 475 KEEYDRVEKEL 485 (1164)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 76
>PRK10132 hypothetical protein; Provisional
Probab=61.23 E-value=85 Score=25.25 Aligned_cols=78 Identities=9% Similarity=-0.076 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 022587 155 IKRSQMVVEQTIEVGTQTATTLKGQT-DQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAII 232 (295)
Q Consensus 155 L~~s~r~l~eTeeiG~~il~~L~~Qr-EqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~ii 232 (295)
+.....++.++-.-+.+-+.+|+.+- ..|..+++.+.+......+++......-.-+-.+-|--++|.+.+-++++++
T Consensus 25 ~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~llG~L 103 (108)
T PRK10132 25 ADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAAVGIFIGAL 103 (108)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 33334444444444444456666653 3455566677766664444444444433344445555555544444444444
No 77
>PHA03386 P10 fibrous body protein; Provisional
Probab=60.82 E-value=33 Score=26.97 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=39.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHH
Q 022587 139 ELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIK 198 (295)
Q Consensus 139 q~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~ 198 (295)
..+..-..-....+......+..+.+..+= ...|+.|.+||..+..++.+|++.|.
T Consensus 5 nILl~Ir~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 5 SVLTQILDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 334444455566677777777777665432 66799999999999999999888664
No 78
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=60.61 E-value=1.3e+02 Score=27.18 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 145 KKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 145 ~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
.++++.-...|..+...+.++..--..+...|..--..|.++..+++...+.+..-..-|+.++-
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~ 155 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGN 155 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544444555555444444444444444444433
No 79
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=60.54 E-value=2.1e+02 Score=29.48 Aligned_cols=62 Identities=11% Similarity=0.199 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHH----HHHhhhhhhhcc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 022587 9 PQLEQIHGEIRDNFR----ALSNGFQKLDKI---KDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEE 70 (295)
Q Consensus 9 ~~~e~ye~e~~~l~~----~l~~~~~kl~~~---~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~ 70 (295)
+.|+.+.+++..+.. +|...+-.+... ..--+-+..+..++..|+.+++-++.+.-++..+-
T Consensus 60 ~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~ 128 (560)
T PF06160_consen 60 EKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELL 128 (560)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888872 222222111111 01244566788888888888888888887777763
No 80
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=60.21 E-value=65 Score=23.58 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccC---Ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHH
Q 022587 10 QLEQIHGEIRDNFRALSNGFQKLDKIK---DS---NRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLND 83 (295)
Q Consensus 10 ~~e~ye~e~~~l~~~l~~~~~kl~~~~---~~---~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~ 83 (295)
.+..|..++..+..=|...-..|.... +. ......++.+...+...+..++.+.-....+.. ..+.....+..
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~-~~~~~~~~i~~ 80 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID-SGPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-cCCCcHHHHHH
Confidence 466788888888777777766663211 11 455566777777787777777777777777643 33444555665
Q ss_pred HHHHHHHHHHH
Q 022587 84 EKQSMIKELNS 94 (295)
Q Consensus 84 r~~~~~~eL~~ 94 (295)
++..+....+.
T Consensus 81 ~~~~l~~~w~~ 91 (105)
T PF00435_consen 81 KLEELNQRWEA 91 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555554444
No 81
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=59.23 E-value=57 Score=24.66 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=40.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHhhHHHHHHHHHHHHH
Q 022587 138 QELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQ---TATTLKGQTDQMGRIVNELDTIQFSIK 198 (295)
Q Consensus 138 rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~---il~~L~~QrEqL~r~~~~l~~~d~~l~ 198 (295)
+..+..-++-....++.....+..+...+.--.. +-+.|+.|..++..+...+.++++-|.
T Consensus 3 ~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 3 QNILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555666666666666666554443322 556688888888888888888877653
No 82
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=58.95 E-value=1e+02 Score=25.51 Aligned_cols=27 Identities=15% Similarity=0.458 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 43 KQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 43 ~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
+.|..+..+++++.++.+++.-|+..+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v 94 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEV 94 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888777665
No 83
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=58.63 E-value=95 Score=24.94 Aligned_cols=80 Identities=9% Similarity=0.130 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 022587 146 KTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQ-MGRIVNELDTI-QFSIKKASQLVKEIGRQVATDKCIMLFLFL 223 (295)
Q Consensus 146 ~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEq-L~r~~~~l~~~-d~~l~rs~r~L~~m~Rr~~tdK~il~~iil 223 (295)
+.+.+-..-++..+.++.++-..+.+=+.+|+.+-+. |.++++++.++ +....+++..+..=---+-.|-|--++|..
T Consensus 12 ~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~VGvaA 91 (104)
T COG4575 12 QLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQGVGVAA 91 (104)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 3455566666777777777777777778888887665 56788888888 444455544444333334444555555544
Q ss_pred HH
Q 022587 224 IV 225 (295)
Q Consensus 224 il 225 (295)
.+
T Consensus 92 aV 93 (104)
T COG4575 92 AV 93 (104)
T ss_pred HH
Confidence 33
No 84
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=57.91 E-value=1.6e+02 Score=27.48 Aligned_cols=62 Identities=8% Similarity=0.181 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHh
Q 022587 150 ETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQL----VKEIGRQV 211 (295)
Q Consensus 150 ~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~----L~~m~Rr~ 211 (295)
.-.+.++.....-...+..=..-+..++.+.|++..--.+|....++|.+|++- +..|..|+
T Consensus 77 ~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrL 142 (333)
T KOG1853|consen 77 RNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRL 142 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHH
Confidence 334445555555555555556667778888999999999999999999988853 45555554
No 85
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=57.89 E-value=19 Score=30.68 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 022587 221 LFLIVCGVIAIIVVKVLTHIKSQH 244 (295)
Q Consensus 221 iilili~iI~iii~~~~~~~~~~~ 244 (295)
|.+++++|+++|+|..-+++|.--
T Consensus 38 IvVliiiiivli~lcssRKkKaaA 61 (189)
T PF05568_consen 38 IVVLIIIIIVLIYLCSSRKKKAAA 61 (189)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHh
Confidence 333344555555565555555433
No 86
>PRK10884 SH3 domain-containing protein; Provisional
Probab=56.85 E-value=1.5e+02 Score=26.60 Aligned_cols=103 Identities=8% Similarity=0.049 Sum_probs=54.8
Q ss_pred cccHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 022587 134 SMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKAS---QLVKEIGRQ 210 (295)
Q Consensus 134 ~~~~rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~---r~L~~m~Rr 210 (295)
.-..+.++-...+.+.+..+.|.++.....+. -.+.-+.+.....++.....+.......+..++ ..+..-...
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQR---TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555665555555555555555554433322 222222222233333334444444444444444 344555555
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 211 VATDKCIMLFLFLIVCGVIAIIVVKVLTH 239 (295)
Q Consensus 211 ~~tdK~il~~iilili~iI~iii~~~~~~ 239 (295)
.-.+..+-||+.--.++.+++++-.++.|
T Consensus 165 ~~~~~~~~wf~~Gg~v~~~GlllGlilp~ 193 (206)
T PRK10884 165 KQRTIIMQWFMYGGGVAGIGLLLGLLLPH 193 (206)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 66666777888888888888887777665
No 87
>PRK10404 hypothetical protein; Provisional
Probab=56.48 E-value=1e+02 Score=24.52 Aligned_cols=78 Identities=14% Similarity=0.053 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-HHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 022587 155 IKRSQMVVEQTIEVGTQTATTLKGQT-DQMGRIVNELDTIQFSIKK-ASQLVKEIGRQVATDKCIMLFLFLIVCGVIAII 232 (295)
Q Consensus 155 L~~s~r~l~eTeeiG~~il~~L~~Qr-EqL~r~~~~l~~~d~~l~r-s~r~L~~m~Rr~~tdK~il~~iilili~iI~ii 232 (295)
+..+..++.++-+-+.+-+++|+.+- ..|..+++.+.+....+.. ++........-+-.|-|-.++|.+.+-++++++
T Consensus 18 ~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avGiaagvGlllG~L 97 (101)
T PRK10404 18 SETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLL 97 (101)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555565553 3455555566666554443 444444444444455555555544444444443
No 88
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=56.30 E-value=3.6e+02 Score=30.97 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=12.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 022587 6 QMSPQLEQIHGEIRDNFRALSNGFQKLDK 34 (295)
Q Consensus 6 ~ms~~~e~ye~e~~~l~~~l~~~~~kl~~ 34 (295)
.|++-|++|+ +++..+.++...+..|..
T Consensus 224 ~l~e~~~~~~-~~~~~le~l~~~~~~l~~ 251 (1353)
T TIGR02680 224 DVADALEQLD-EYRDELERLEALERALRN 251 (1353)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4555555555 233444444444444433
No 89
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=56.14 E-value=13 Score=35.20 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 022587 217 IMLFLFLIVCGVIAIIVVKVLTH 239 (295)
Q Consensus 217 il~~iilili~iI~iii~~~~~~ 239 (295)
+-.++.+++|++|++|||.++++
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRY 281 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRY 281 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556666666666654
No 90
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=55.95 E-value=5.9 Score=36.76 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=12.1
Q ss_pred cCCCCCCCCCCCCCC
Q 022587 264 VNPNNKDIRDIPGLA 278 (295)
Q Consensus 264 ~~~~~~~~~~~~~~~ 278 (295)
+=||-.-+|++|++.
T Consensus 236 ~iP~~dfw~~lP~l~ 250 (268)
T PF09451_consen 236 LIPHFDFWRSLPYLI 250 (268)
T ss_pred ecccHhHHHhchHHH
Confidence 558888899999874
No 91
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=55.91 E-value=18 Score=28.79 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022587 215 KCIMLFLFLIVCGVIAIIVVKVLTHI 240 (295)
Q Consensus 215 K~il~~iilili~iI~iii~~~~~~~ 240 (295)
|.+++..+.|++.+|++||-+.+||.
T Consensus 15 K~~~FA~L~i~~FiILLIi~~~IW~~ 40 (121)
T PF10669_consen 15 KIMFFAFLFIVVFIILLIITKSIWHD 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55666666666777777777777764
No 92
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=55.81 E-value=15 Score=28.36 Aligned_cols=15 Identities=40% Similarity=0.882 Sum_probs=12.1
Q ss_pred cCCCCCCCCCCCCCCCCcc
Q 022587 264 VNPNNKDIRDIPGLAPPAP 282 (295)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~ 282 (295)
|+-.- .+||+.||.|
T Consensus 44 vYlDS----~~PGv~PptP 58 (85)
T PF15062_consen 44 VYLDS----SEPGVNPPTP 58 (85)
T ss_pred EEecc----cCCCCCCCCC
Confidence 55555 7999999998
No 93
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=55.54 E-value=3e+02 Score=29.71 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 022587 149 DETDQAIKRSQM-VVEQTIEVGTQTATTLKGQTDQMGRIVNEL--------DTIQFSIKKASQLVKEIGRQVATDKCIML 219 (295)
Q Consensus 149 ~~t~~~L~~s~r-~l~eTeeiG~~il~~L~~QrEqL~r~~~~l--------~~~d~~l~rs~r~L~~m~Rr~~tdK~il~ 219 (295)
.++..+++..-. +..+|..+-..+-..|+...+++...-+.+ .++..+..++.+.......+.-..||+..
T Consensus 338 ~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~~ 417 (806)
T PF05478_consen 338 QEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWIVG 417 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 344444444322 223444444444444444444444333332 23333333333333333445556666665
Q ss_pred HHHHHH
Q 022587 220 FLFLIV 225 (295)
Q Consensus 220 ~iilil 225 (295)
+++.++
T Consensus 418 lil~~~ 423 (806)
T PF05478_consen 418 LILCCV 423 (806)
T ss_pred HHHHHH
Confidence 544333
No 94
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.37 E-value=3.7e+02 Score=30.72 Aligned_cols=73 Identities=8% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 022587 138 QELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELD------TIQFSIKKASQLVKEIGRQ 210 (295)
Q Consensus 138 rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~------~~d~~l~rs~r~L~~m~Rr 210 (295)
++.+.....-++........+.+.+.+.+.--..+..+|..-..++......+. +.+..|..+..-+......
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~ 654 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQ 654 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Confidence 444455555566666677777777777776666777776666666665554444 2333555555555554444
No 95
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.31 E-value=3.6e+02 Score=30.55 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=14.6
Q ss_pred HHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 176 LKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 176 L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
|..-+..+...+..+..++.-|.-..-.|-.+-|.-
T Consensus 513 l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~ 548 (1201)
T PF12128_consen 513 LRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKN 548 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhC
Confidence 333333344444444444444443333334444433
No 96
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=54.91 E-value=14 Score=24.72 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022587 217 IMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 217 il~~iilili~iI~iii~~~ 236 (295)
++|++.++.++|+..++|++
T Consensus 13 VF~lVglv~i~iva~~iYRK 32 (43)
T PF08114_consen 13 VFCLVGLVGIGIVALFIYRK 32 (43)
T ss_pred ehHHHHHHHHHHHHHHHHHH
Confidence 34555566678888888876
No 97
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=54.82 E-value=6.7 Score=31.10 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=12.9
Q ss_pred hchHHHHHHHHHHHHHHHHHH-HHHHhhccc
Q 022587 213 TDKCIMLFLFLIVCGVIAIIV-VKVLTHIKS 242 (295)
Q Consensus 213 tdK~il~~iilili~iI~iii-~~~~~~~~~ 242 (295)
.+-+++.++.++++++|+++| |+++-+.+.
T Consensus 61 ~~iili~lls~v~IlVily~IyYFVILRer~ 91 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYYFVILRERQ 91 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheEEEEEeccc
Confidence 344444444444444444444 444444433
No 98
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=54.35 E-value=1.3e+02 Score=25.04 Aligned_cols=61 Identities=16% Similarity=0.339 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
++..+++.-+-+...-+.|++.|++++. .-++.....+.+.+.+.++++-+.++.-++..+
T Consensus 48 v~kql~~vs~~l~~tKkhLsqRId~vd~--klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKHLSQRIDRVDD--KLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4445555555556666666666666654 336777778888888888888888888777765
No 99
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=54.07 E-value=98 Score=23.70 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=23.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHH
Q 022587 144 GKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQF 195 (295)
Q Consensus 144 ~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~ 195 (295)
..+.|.++-++-+.+...+.+.-+.=..+-+++..+.-.|...+.-+.....
T Consensus 13 t~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r 64 (92)
T PF03908_consen 13 TRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLER 64 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433333333333333333333334445555555555555555544443
No 100
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=53.85 E-value=2.7e+02 Score=28.81 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhch
Q 022587 47 ELTGRMRECKRLIKEMDREIKD 68 (295)
Q Consensus 47 ~le~~l~ea~~lL~qmelE~r~ 68 (295)
.++.-+.++.-+....+.|+++
T Consensus 205 ~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 205 RVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred HHHHHHHHHHHHHhccHHHHHH
Confidence 3444444444555555555554
No 101
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=53.46 E-value=1.9e+02 Score=26.80 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 022587 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCG 227 (295)
Q Consensus 148 l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~ 227 (295)
+.+-.+-+..+...+.|..++=..|-.++ ...+..+..--+.+++|-+..+.--++- --++.+|++++++++
T Consensus 194 ~ael~qLfndm~~~V~eq~e~Vd~I~~~~-------~~~~~n~~~g~~h~d~AvksaRaaRkkk-i~c~gI~~iii~viv 265 (280)
T COG5074 194 MAELTQLFNDMEELVIEQQENVDVIDKNV-------EDAQENVEQGVGHTDKAVKSARAARKKK-IRCYGICFIIIIVIV 265 (280)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHhhH-------hhHHhhHHHhhhhHHHHHHHHHHHHhcc-eehhhhHHHHHHHHH
Confidence 44444555555555555555544444443 3444444444444444444454433332 346666666666655
Q ss_pred HHH
Q 022587 228 VIA 230 (295)
Q Consensus 228 iI~ 230 (295)
+++
T Consensus 266 ~vv 268 (280)
T COG5074 266 VVV 268 (280)
T ss_pred HHH
Confidence 555
No 102
>PHA03240 envelope glycoprotein M; Provisional
Probab=53.30 E-value=13 Score=33.64 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022587 217 IMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 217 il~~iilili~iI~iii~~~ 236 (295)
.+|++++|++++|+|+++.+
T Consensus 213 ~~WIiilIIiIiIIIL~cfK 232 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFFFK 232 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHh
Confidence 44555544444444444443
No 103
>PHA02975 hypothetical protein; Provisional
Probab=52.83 E-value=36 Score=25.24 Aligned_cols=11 Identities=9% Similarity=0.159 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 022587 226 CGVIAIIVVKV 236 (295)
Q Consensus 226 i~iI~iii~~~ 236 (295)
+++++...|.+
T Consensus 56 ~~~~~~flYLK 66 (69)
T PHA02975 56 CIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHHHHH
Confidence 33333333433
No 104
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=52.22 E-value=1.8e+02 Score=26.22 Aligned_cols=54 Identities=13% Similarity=0.303 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHH
Q 022587 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIK 60 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~ 60 (295)
+|..|+.|=..++.-+...++.+..+-.+..-++-+..+.+.+..+.+++..++
T Consensus 3 ~~~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~ 56 (207)
T PF05546_consen 3 LSKKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVR 56 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555565555555544455555444432224445555555555555554433
No 105
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=51.90 E-value=14 Score=33.40 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=13.6
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHH
Q 022587 210 QVATDKCIMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 210 r~~tdK~il~~iilili~iI~iii~~~ 236 (295)
|-.+|+++=++|++++|+||++.+..+
T Consensus 9 rRK~N~iLNiaI~IV~lLIiiva~~lf 35 (217)
T PF07423_consen 9 RRKTNKILNIAIGIVSLLIIIVAYQLF 35 (217)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhe
Confidence 344566665665555544444444333
No 106
>PHA03049 IMV membrane protein; Provisional
Probab=51.24 E-value=22 Score=26.22 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 022587 221 LFLIVCGVIAIIVVKVLTHIKS 242 (295)
Q Consensus 221 iilili~iI~iii~~~~~~~~~ 242 (295)
.++|.++||++|+|-+-.++++
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3455567778888888555443
No 107
>PRK04325 hypothetical protein; Provisional
Probab=50.91 E-value=66 Score=23.98 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=24.2
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 022587 1 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKE 61 (295)
Q Consensus 1 ~~~~~~ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~q 61 (295)
|++...|.+.+..+|..+... ...+..|+.. -.+..+.|..++..+....+-+++
T Consensus 1 ~~~~~~~e~Ri~~LE~klAfQ----E~tIe~LN~v--v~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 1 MDAVQEMEDRITELEIQLAFQ----EDLIDGLNAT--VARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred CCcchhHHHHHHHHHHHHHHH----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666544444 3334444431 122333444444444444333333
No 108
>PF15106 TMEM156: TMEM156 protein family
Probab=50.91 E-value=18 Score=32.61 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=19.2
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHhhcccccc-chhhhH
Q 022587 215 KCIMLFL-FLIVCGVIAIIVVKVLTHIKSQHN-FQQWQF 251 (295)
Q Consensus 215 K~il~~i-ilili~iI~iii~~~~~~~~~~~~-~~~~~~ 251 (295)
|+.+|++ ++++++.|++||||++. +|- +|.||.
T Consensus 175 KITWYvLVllVfiflii~iI~KIle----~hrrvqkwq~ 209 (226)
T PF15106_consen 175 KITWYVLVLLVFIFLIILIIYKILE----GHRRVQKWQS 209 (226)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----hhhhHhHHhh
Confidence 5555543 45556777778888753 332 556653
No 109
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=49.95 E-value=4.1e+02 Score=29.72 Aligned_cols=49 Identities=18% Similarity=0.383 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 9 PQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMD 63 (295)
Q Consensus 9 ~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qme 63 (295)
.+|+.+.+-|..+-+.+......++. ....|..+++++.++++.++.|+
T Consensus 207 T~L~qi~~~~~~~~~~~~~~~~~i~~------~~e~i~~l~k~i~e~~e~~~~~~ 255 (1074)
T KOG0250|consen 207 TQLEQITESYSEIMESLDHAKELIDL------KEEEIKNLKKKIKEEEEKLDNLE 255 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444333333322 33345555555556655555544
No 110
>PRK02224 chromosome segregation protein; Provisional
Probab=49.88 E-value=3.6e+02 Score=28.98 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 39 NRQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 39 ~~r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
.+....+..++..+.++..-++.+..++...
T Consensus 275 ~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 275 EELAEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445556666666666666666666555443
No 111
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=49.79 E-value=24 Score=26.10 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 022587 222 FLIVCGVIAIIVVKVLTHIKS 242 (295)
Q Consensus 222 ilili~iI~iii~~~~~~~~~ 242 (295)
++|.++||++|+|.+-.+++.
T Consensus 8 i~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 8 IIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 444466777777777555544
No 112
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=49.28 E-value=1.1e+02 Score=23.05 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHH
Q 022587 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQF 195 (295)
Q Consensus 147 ~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~ 195 (295)
.+++....++..++.+.. +-.++-+-++..++.+++++.+++.++.
T Consensus 27 ~l~~~~~ti~~l~~~~~~---i~~e~~~ll~~~n~l~~dv~~k~~~v~~ 72 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDP---ITKEINDLLHNTNELLEDVNEKLEKVDP 72 (90)
T ss_pred HHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444444444443333 2333333344444444444444444433
No 113
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.15 E-value=1.5e+02 Score=29.59 Aligned_cols=66 Identities=11% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 146 KTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 146 ~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
++++++...+..-.+.+.++.+.-.....+|..+...|..+.+.+.++..++++.++-|..+..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
No 114
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=48.55 E-value=30 Score=26.68 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022587 220 FLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 220 ~iilili~iI~iii~~~ 236 (295)
+|++++++.|++..|+.
T Consensus 10 ~V~V~IVclliya~YRR 26 (92)
T PHA02681 10 VIVISIVCYIVIMMYRR 26 (92)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444445555555655
No 115
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=47.96 E-value=4.4e+02 Score=29.50 Aligned_cols=22 Identities=9% Similarity=0.315 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 022587 12 EQIHGEIRDNFRALSNGFQKLD 33 (295)
Q Consensus 12 e~ye~e~~~l~~~l~~~~~kl~ 33 (295)
-.++.|+..+...|..+=.+++
T Consensus 277 ~~~~~ql~~~~~~i~~~qek~~ 298 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKKKQEKVD 298 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444433333
No 116
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=47.61 E-value=1.7e+02 Score=24.55 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHH
Q 022587 10 QLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMI 89 (295)
Q Consensus 10 ~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~ 89 (295)
+|..-+.++..+-..+.+.+.-+ ..|+..+..+..++.|++ +++++.-.++- +.++-..+..+++...
T Consensus 16 eL~~a~~~I~~~q~r~a~a~~~~------~~r~seldqA~~~~~eae--~k~~~~~a~~P----~~~~~~~wqlkvr~a~ 83 (136)
T PF11570_consen 16 ELDQADEDIATLQERQASAEQAL------NGRRSELDQANKKVKEAE--IKQDEFFANNP----PHEYGRGWQLKVRRAQ 83 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH--HHHCCCCTT-T----TSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHH--hcccccccCCC----ccccccHHHHHHHHHH
Confidence 45556666666655555544443 457778888888888855 56666544443 2245566778888888
Q ss_pred HHHHH
Q 022587 90 KELNS 94 (295)
Q Consensus 90 ~eL~~ 94 (295)
.+++.
T Consensus 84 ~dv~n 88 (136)
T PF11570_consen 84 KDVQN 88 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88877
No 117
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=47.13 E-value=22 Score=27.41 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=15.1
Q ss_pred cccCCCCCCCCCCCCCCCCc
Q 022587 262 QVVNPNNKDIRDIPGLAPPA 281 (295)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~ 281 (295)
.-+||=|-..|.=|-+++|-
T Consensus 62 ~f~NPLNaTMR~NPfvntpq 81 (85)
T PF10717_consen 62 GFTNPLNATMRANPFVNTPQ 81 (85)
T ss_pred cccccchHHHhcCCCcCCcc
Confidence 34788888888888887654
No 118
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.84 E-value=1.4e+02 Score=30.82 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q 022587 10 QLEQIHGEIRDNFRALSNGFQKLD 33 (295)
Q Consensus 10 ~~e~ye~e~~~l~~~l~~~~~kl~ 33 (295)
..+..++.|+.........++.|+
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp 188 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLP 188 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555555555555555555554
No 119
>PF15339 Afaf: Acrosome formation-associated factor
Probab=46.46 E-value=36 Score=29.82 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 022587 216 CIMLFLFLIVCGVIAIIVVKVLTHIKSQ 243 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~~~~~~~~~ 243 (295)
.+|.+++++.+++++...++++++....
T Consensus 137 sLmTl~lfv~Ll~~c~atlyklk~l~~k 164 (200)
T PF15339_consen 137 SLMTLFLFVILLAFCSATLYKLKHLSYK 164 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3555555566666777777788887665
No 120
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=46.45 E-value=22 Score=32.90 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=29.3
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH-hhccc-cccchhhhHHHHHhh
Q 022587 204 VKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVL-THIKS-QHNFQQWQFSIFCLL 257 (295)
Q Consensus 204 L~~m~Rr~~tdK~il~~iilili~iI~iii~~~~-~~~~~-~~~~~~~~~~~~~~~ 257 (295)
+..++.+.++.|+|+++++.++++++++++-.-- ...+. +-.+=.|....+++|
T Consensus 186 vSSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~ 241 (256)
T PF09788_consen 186 VSSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIAL 241 (256)
T ss_pred eccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHH
Confidence 4566777888888888876555444444432111 11111 123446766666655
No 121
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=46.38 E-value=3.5e+02 Score=27.84 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=43.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022587 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIK---DSNRQTKQLEELTGRMRECKRLIKEMDREIK 67 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~---~~~~r~~~l~~le~~l~ea~~lL~qmelE~r 67 (295)
..+++..+...|-..+.+|..|..+|-.-. +...-...+..++..+.++..+|+..+++.-
T Consensus 217 iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~ 280 (569)
T PRK04778 217 IPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEA 280 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 345677778888888888888888875411 2234566788888888888888888876443
No 122
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=46.31 E-value=2.3e+02 Score=28.72 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 022587 193 IQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 193 ~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~iii~~~ 236 (295)
-+..++.+.+..+.+..|+...+|....++++++++|+.++++=
T Consensus 241 ~~~~lk~~dk~Ck~il~K~~~~~c~w~~l~llllvliaG~l~yD 284 (469)
T PF10151_consen 241 KDESLKECDKACKVILGKMSGSSCPWTRLLLLLLVLIAGFLAYD 284 (469)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHh
Confidence 34566778888888888887776655554444444444444443
No 123
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=46.01 E-value=2.4e+02 Score=25.80 Aligned_cols=65 Identities=12% Similarity=0.208 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 147 TMDETDQAIKRSQMV----VEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 147 ~l~~t~~~L~~s~r~----l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
-+..+..-|.+...- ..+++.+...|-+.|..-...|...++-++++...+..|..+........
T Consensus 154 El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l 222 (264)
T PF06008_consen 154 ELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNL 222 (264)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 34666677888888999999999999999999999999988777666664
No 124
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.68 E-value=1.7e+02 Score=25.71 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCC-ChhhhHHHHHHHHHHHHHHHH
Q 022587 39 NRQTKQLEELTGRMRECKRLIKEMDREIKDEEARN-PPEVNKQLNDEKQSMIKELNS 94 (295)
Q Consensus 39 ~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~-~~~~r~~~~~r~~~~~~eL~~ 94 (295)
..+...+..++..+++++.-+..++.++....... +...|..+..++..+.+++..
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~ 121 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKE 121 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888877777666554322 234576777777776666655
No 125
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.40 E-value=1.4e+02 Score=25.49 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022587 43 KQLEELTGRMRECKRLIKEMDR 64 (295)
Q Consensus 43 ~~l~~le~~l~ea~~lL~qmel 64 (295)
..+..++..+.++++.++....
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~ 166 (218)
T cd07596 145 AKVEELEEELEEAESALEEARK 166 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444443
No 126
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=45.36 E-value=4.9e+02 Score=29.29 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 184 GRIVNELDTIQFSIKKASQLVKEIGRQ 210 (295)
Q Consensus 184 ~r~~~~l~~~d~~l~rs~r~L~~m~Rr 210 (295)
......+......+.....-+..+...
T Consensus 852 ~~~~~~~~~~~~~l~~~~~~~~~l~~~ 878 (1163)
T COG1196 852 EELEKELEELKEELEELEAEKEELEDE 878 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444333
No 127
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=45.29 E-value=1.1e+02 Score=21.65 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=44.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHH
Q 022587 140 LIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKAS 201 (295)
Q Consensus 140 ~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~ 201 (295)
.++..++.++++...+.++..+..+|-+-=..=-+.|..=...+..+...+...+..|..-.
T Consensus 2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34556667777777777777777777665555567778888888888888888877776543
No 128
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=45.12 E-value=6.3e+02 Score=30.42 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=53.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 022587 142 DAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVK 205 (295)
Q Consensus 142 ~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~ 205 (295)
....+.+++.+..+..-.+.+.|+++..+..+...+.-...++...++.+...+++..=+...+
T Consensus 1853 ~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~r 1916 (1930)
T KOG0161|consen 1853 ERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTAESELNKLRSKLR 1916 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888899999999999999999999999999999999999999988888876544433
No 129
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=44.83 E-value=1.8e+02 Score=24.09 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 022587 9 PQLEQIHGEIRDNFRA 24 (295)
Q Consensus 9 ~~~e~ye~e~~~l~~~ 24 (295)
..|.++|.||..|...
T Consensus 27 ~~l~~LEae~q~L~~k 42 (126)
T PF09403_consen 27 SELNQLEAEYQQLEQK 42 (126)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467777777777533
No 130
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=44.83 E-value=1.9e+02 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022587 193 IQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 193 ~d~~l~rs~r~L~~m~Rr~ 211 (295)
+...++.+-.-+....++.
T Consensus 100 vk~~i~~~~~~~~~~~~~~ 118 (144)
T PF11657_consen 100 VKSEIDNSLAEVNDLVREA 118 (144)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 131
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=44.65 E-value=1.4e+02 Score=22.61 Aligned_cols=61 Identities=8% Similarity=0.202 Sum_probs=41.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHH
Q 022587 139 ELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKK 199 (295)
Q Consensus 139 q~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~r 199 (295)
..+...+..++.....++....-+.++-+-...++++...+.+.+..+-+.+.++...++.
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666677777777777777777777777666553
No 132
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=44.18 E-value=31 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Q 022587 221 LFLIVCGVIAIIVVKVLTHIKSQHN 245 (295)
Q Consensus 221 iilili~iI~iii~~~~~~~~~~~~ 245 (295)
.++++++++++.|+..+|..+=-|.
T Consensus 8 ~i~iv~~lLg~~I~~~~K~ygYkht 32 (50)
T PF12606_consen 8 SIFIVMGLLGLSICTTLKAYGYKHT 32 (50)
T ss_pred HHHHHHHHHHHHHHHHhhccccccc
Confidence 3445556666666666666655444
No 133
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=44.01 E-value=49 Score=22.18 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 022587 222 FLIVCGVIAIIVVKVLTHIKSQH 244 (295)
Q Consensus 222 ilili~iI~iii~~~~~~~~~~~ 244 (295)
|++.++++++.+++.++|.+++.
T Consensus 19 I~~~igm~~~~~~~F~~k~~~~~ 41 (42)
T PF11346_consen 19 IVFTIGMGVFFIRYFIRKMKEDE 41 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHcccC
Confidence 44445666666666666666543
No 134
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=43.97 E-value=1.4e+02 Score=24.88 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=63.1
Q ss_pred cHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 022587 136 SNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDK 215 (295)
Q Consensus 136 ~~rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK 215 (295)
-+++++-.-...++....+|......-+--.++..+++.--.+|+..+..+..+++.+.+.+..--.-+..|-.-+++.-
T Consensus 42 knq~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~vmkqn 121 (177)
T PF12495_consen 42 KNQQLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSDVMKQN 121 (177)
T ss_pred HhHHHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 44555555555555555556555555555556667777777889999999999999999999888888888888887777
Q ss_pred HHHHHHH
Q 022587 216 CIMLFLF 222 (295)
Q Consensus 216 ~il~~ii 222 (295)
..+.+-|
T Consensus 122 y~lslqi 128 (177)
T PF12495_consen 122 YVLSLQI 128 (177)
T ss_pred hhhhhhH
Confidence 6665543
No 135
>PRK11677 hypothetical protein; Provisional
Probab=43.52 E-value=30 Score=29.04 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022587 216 CIMLFLFLIVCGVIAIIVVKVL 237 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~~~ 237 (295)
|+++++.+|+.+||++++.+++
T Consensus 3 W~~a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5566666666666777776653
No 136
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.32 E-value=47 Score=28.28 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=24.4
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Q 022587 206 EIGRQVATDKCIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQ 247 (295)
Q Consensus 206 ~m~Rr~~tdK~il~~iilili~iI~iii~~~~~~~~~~~~~~ 247 (295)
.+..+...+-++.+++++++++++++..++.++|... --||
T Consensus 7 Yl~~q~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~-tKyR 47 (149)
T PF11694_consen 7 YLQSQQSQNDYLRYILIIILLLVLIFFFIKYLRNRLD-TKYR 47 (149)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhh
Confidence 3444555566677777766666666666666665543 3445
No 137
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=43.10 E-value=75 Score=24.03 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=26.4
Q ss_pred HHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 175 TLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 175 ~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
.|....++|.++...+..+.+.|+.|...+..|.+..
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~~ 38 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIETLRSAKSNMNRVQETV 38 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777777664
No 138
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=43.08 E-value=36 Score=22.96 Aligned_cols=20 Identities=5% Similarity=0.320 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022587 217 IMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 217 il~~iilili~iI~iii~~~ 236 (295)
+.+++..+++++.++.+|.-
T Consensus 7 ~~i~i~~~lv~~Tgy~iYta 26 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTA 26 (43)
T ss_pred HHHHHHHHHHHHHhhhhhhe
Confidence 34455566677777888877
No 139
>PTZ00464 SNF-7-like protein; Provisional
Probab=43.03 E-value=2.5e+02 Score=25.24 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 160 MVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (295)
Q Consensus 160 r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr 210 (295)
..+.++-..|..++..+..+. .|+++++-++++...+..+..+=..+++.
T Consensus 101 ~~vv~amk~g~kaLK~~~k~i-~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~ 150 (211)
T PTZ00464 101 KVQVDAMKQAAKTLKKQFKKL-NVDKVEDLQDELADLYEDTQEIQEIMGRA 150 (211)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444556667777777777777 67788888888887777777766666654
No 140
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=42.74 E-value=30 Score=32.08 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=17.7
Q ss_pred hhhHHHHHhhccCccccCCC
Q 022587 248 QWQFSIFCLLSMNFQVVNPN 267 (295)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~ 267 (295)
...|++||+.-+|.--|+||
T Consensus 235 t~~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 235 TVYFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred HHHHHHHHHhhcCCCCCCCC
Confidence 45688999999999999997
No 141
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=42.37 E-value=2.4e+02 Score=24.78 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 42 TKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 42 ~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
...+..++..+.+++.-.+....+...+
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444443
No 142
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=41.91 E-value=5e+02 Score=28.42 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=11.7
Q ss_pred HHHHhhhHHHhhHHHHHHHHHHHHHH
Q 022587 174 TTLKGQTDQMGRIVNELDTIQFSIKK 199 (295)
Q Consensus 174 ~~L~~QrEqL~r~~~~l~~~d~~l~r 199 (295)
.++......+......+......+..
T Consensus 469 ~~l~~~~~~l~~l~~~l~~l~~~~~~ 494 (1164)
T TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAE 494 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 143
>PTZ00046 rifin; Provisional
Probab=41.65 E-value=31 Score=33.61 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022587 215 KCIMLFLFLIVCGVIAIIVVKVLTHI 240 (295)
Q Consensus 215 K~il~~iilili~iI~iii~~~~~~~ 240 (295)
-++..++.++++++|++|||.+|++-
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYR 341 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYR 341 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555556677777778777653
No 144
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.25 E-value=2.7e+02 Score=29.96 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 022587 12 EQIHGEIRDNFRALSNG 28 (295)
Q Consensus 12 e~ye~e~~~l~~~l~~~ 28 (295)
...+.++..++.+|...
T Consensus 507 ~~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 507 GEFKEEINVLIEKLSAL 523 (771)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 33444444444444433
No 145
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=41.05 E-value=1.9e+02 Score=23.22 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 36 KDSNRQTKQLEELTGRMRECKRLIKEMD 63 (295)
Q Consensus 36 ~~~~~r~~~l~~le~~l~ea~~lL~qme 63 (295)
.+++++.....+++....++++.++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (181)
T PF12729_consen 72 TDPEERQEIEKEIDEARAEIDEALEEYE 99 (181)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777766
No 146
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=40.82 E-value=40 Score=26.04 Aligned_cols=10 Identities=0% Similarity=0.537 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 022587 197 IKKASQLVKE 206 (295)
Q Consensus 197 l~rs~r~L~~ 206 (295)
+.+-+..|+.
T Consensus 26 VsrN~sfird 35 (84)
T PF06143_consen 26 VSRNRSFIRD 35 (84)
T ss_pred HHhChHHHHH
Confidence 3333333433
No 147
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=40.72 E-value=33 Score=33.37 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022587 214 DKCIMLFLFLIVCGVIAIIVVKVLTHI 240 (295)
Q Consensus 214 dK~il~~iilili~iI~iii~~~~~~~ 240 (295)
+-++..+|.++++++|++|||.+|++-
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYR 336 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYR 336 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555556677777778777653
No 148
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=40.61 E-value=5.9e+02 Score=28.84 Aligned_cols=18 Identities=11% Similarity=0.473 Sum_probs=7.1
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 022587 182 QMGRIVNELDTIQFSIKK 199 (295)
Q Consensus 182 qL~r~~~~l~~~d~~l~r 199 (295)
.|...+.++..++..|..
T Consensus 772 ~I~~l~~~i~~L~~~l~~ 789 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKR 789 (1201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444433333
No 149
>PF11803 UXS1_N: UDP-glucuronate decarboxylase N-terminal; InterPro: IPR021761 The N terminus of the UDP-glucuronate decarboxylases may be involved in localisation to the perinuclear Golgi membrane. ; GO: 0048040 UDP-glucuronate decarboxylase activity
Probab=40.24 E-value=23 Score=26.71 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhccccccch--hhhHHHHHhhccCccccCCCCCCCCCC
Q 022587 201 SQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQ--QWQFSIFCLLSMNFQVVNPNNKDIRDI 274 (295)
Q Consensus 201 ~r~L~~m~Rr~~tdK~il~~iilili~iI~iii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (295)
.+++..+.||++ |+++.+..+.-++.+ --.|---+.|+|+--.| +-++.+ |.|-.+.|||+
T Consensus 7 ~~l~~~~NRr~m--kll~~lal~ayiasv-wg~~vnmrsIQEnGe~Kie~kiee~----------v~plreki~dl 69 (78)
T PF11803_consen 7 ERLISGCNRRRM--KLLLGLALIAYIASV-WGNYVNMRSIQENGELKIEQKIEEA----------VAPLREKIRDL 69 (78)
T ss_pred hHHHHHhhHHHH--HHHHHHHHHHHHHHH-HHhhcCHHHHHhccchhHHHHHHHH----------HhHHHHHHHHH
Confidence 356677888865 444433322222222 22233447788877776 555544 66666666665
No 150
>PHA02902 putative IMV membrane protein; Provisional
Probab=40.00 E-value=47 Score=24.39 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 022587 214 DKCIMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 214 dK~il~~iilili~iI~iii~~~ 236 (295)
|-+++..+++++++.+++..|+.
T Consensus 4 dtfvi~~v~v~Ivclliya~YrR 26 (70)
T PHA02902 4 DTFVILAVIVIIFCLLIYAAYKR 26 (70)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666
No 151
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.65 E-value=3.4e+02 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 41 QTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 41 r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
-.-.++++...|.+-++++.+++-|+-.-
T Consensus 68 Y~~sC~EL~~~I~egr~~~~~~E~et~~~ 96 (312)
T smart00787 68 YQFSCKELKKYISEGRDLFKEIEEETLIN 96 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34578999999999999999999887753
No 152
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.38 E-value=1.6e+02 Score=28.08 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022587 45 LEELTGRMRECKRLIKEMDR 64 (295)
Q Consensus 45 l~~le~~l~ea~~lL~qmel 64 (295)
+.+++..-.+...-|.+++.
T Consensus 66 L~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 153
>PRK02119 hypothetical protein; Provisional
Probab=38.28 E-value=1.3e+02 Score=22.44 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=8.4
Q ss_pred cccccccHHHHHHHHHHHH
Q 022587 2 ATDLQMSPQLEQIHGEIRD 20 (295)
Q Consensus 2 ~~~~~ms~~~e~ye~e~~~ 20 (295)
+.+..|.+-+..+|..+..
T Consensus 2 ~~~~~~e~Ri~~LE~rla~ 20 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAF 20 (73)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 3344444445555544333
No 154
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.93 E-value=3.8e+02 Score=26.09 Aligned_cols=99 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHH
Q 022587 6 QMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEK 85 (295)
Q Consensus 6 ~ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~ 85 (295)
++++.+.....++..+..+|++.+.++.+ .-.--+.++..+-.....+.+-|.+...+.+.. ...+
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~s--REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~------------s~~V 296 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDISKTLEKIES--REKYINNQLEPLIQEYRSAQDELSEVQEKYKQA------------SEGV 296 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------hhHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchhhhccCCCC
Q 022587 86 QSMIKELNSYVALRKTYMNSLGNKKVELFDMGAG 119 (295)
Q Consensus 86 ~~~~~eL~~~~~l~k~~~~~~~~~R~~Lf~~~~~ 119 (295)
..+..+|+.......+.+..++ .|..-+.++++
T Consensus 297 ~~~t~~L~~IseeLe~vK~eme-erg~~mtD~sP 329 (359)
T PF10498_consen 297 SERTRELAEISEELEQVKQEME-ERGSSMTDGSP 329 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCH
No 155
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=37.67 E-value=14 Score=34.75 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 022587 194 QFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 194 d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~iii~~~ 236 (295)
++-+.+|..-.+.++-..++ +|+++.+++++++|+++|||.
T Consensus 260 ~Gl~~~SSnss~S~s~~l~p--iil~IG~vl~i~~Ig~~ifK~ 300 (305)
T PF04639_consen 260 NGLITKSSNSSKSVSDSLLP--IILIIGGVLLIVFIGYFIFKR 300 (305)
T ss_pred ccccccccCccchhhhhhhH--HHHHHHHHHHHHHhhheeeEe
Confidence 33344444444444433332 344444555566666666665
No 156
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=37.45 E-value=49 Score=28.21 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCC
Q 022587 269 KDIRDIPGLAPP 280 (295)
Q Consensus 269 ~~~~~~~~~~~~ 280 (295)
-+++..|+-+||
T Consensus 105 n~v~SyP~apPp 116 (155)
T PF10873_consen 105 NAVSSYPAAPPP 116 (155)
T ss_pred ccccccCCCCCC
Confidence 345566664443
No 157
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=37.35 E-value=50 Score=25.59 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=22.4
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 211 VATDKCIMLFLFLIVCGVIAIIVVKVLTH 239 (295)
Q Consensus 211 ~~tdK~il~~iilili~iI~iii~~~~~~ 239 (295)
+.-||.||.+.++.+.+++++|.|-..++
T Consensus 33 ~kPNk~iM~~Gl~a~~~c~gYi~Ym~~~~ 61 (86)
T PF14937_consen 33 VKPNKPIMAFGLIAITLCVGYIAYMHATY 61 (86)
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999998888888888888865443
No 158
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=36.93 E-value=4.4e+02 Score=26.29 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 022587 215 KCIMLFLFLIV 225 (295)
Q Consensus 215 K~il~~iilil 225 (295)
||..+++++++
T Consensus 208 Rw~~~l~lL~~ 218 (418)
T cd07912 208 RWLAYLGLLSL 218 (418)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 159
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=36.90 E-value=1.8e+02 Score=22.91 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHH-HHHHHHHHHHHHhhccc
Q 022587 198 KKASQLVKEIGRQVATDKCIMLFLFLIV-CGVIAIIVVKVLTHIKS 242 (295)
Q Consensus 198 ~rs~r~L~~m~Rr~~tdK~il~~iilil-i~iI~iii~~~~~~~~~ 242 (295)
+=....+++|..=+.+||..+.++-++- .+-|+..+|+.++.-++
T Consensus 52 ~W~~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~LV~~~~KKe~~ 97 (100)
T PF06363_consen 52 SWVKNKMKSMLSFVERNKAWFTVVSAVTSFISILLLVTKIFKKEKS 97 (100)
T ss_pred HHHHHHHHHHHHHHHHcchHhhHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3344567788888899998777665544 33355555555554443
No 160
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=36.76 E-value=46 Score=23.99 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHhhccccccchhhh
Q 022587 215 KCIMLFLFLIVCG-VIAIIVVKVLTHIKSQHNFQQWQ 250 (295)
Q Consensus 215 K~il~~iilili~-iI~iii~~~~~~~~~~~~~~~~~ 250 (295)
|+++.+-++|+++ ++...|-.+.+|-.-+..++.-+
T Consensus 11 riVLLISfiIlfgRl~Y~~I~a~~hHq~k~~a~~~~~ 47 (59)
T PF11119_consen 11 RIVLLISFIILFGRLIYSAIGAWVHHQDKKQAQQIEQ 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccc
Confidence 6777777777777 56666666777766666665433
No 161
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=36.51 E-value=38 Score=32.02 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhc
Q 022587 54 ECKRLIKEMDREIK 67 (295)
Q Consensus 54 ea~~lL~qmelE~r 67 (295)
|.++.+++|+.|+-
T Consensus 59 EmK~iid~~n~eai 72 (295)
T TIGR01478 59 ELKEIIDKLNEEAI 72 (295)
T ss_pred HHHHHHHHHhHHHh
Confidence 55566666665443
No 162
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=36.38 E-value=31 Score=33.07 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022587 219 LFLFLIVCGVIAIIVVKVLT 238 (295)
Q Consensus 219 ~~iilili~iI~iii~~~~~ 238 (295)
+++++|++++|++|||+++.
T Consensus 158 ~lf~ii~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 158 WLFWIIFLLVLAFIVYSLFL 177 (318)
T ss_pred hhhhHHHHHHHHHHHHHHHh
Confidence 44455667788888888744
No 163
>PRK10869 recombination and repair protein; Provisional
Probab=36.34 E-value=4.9e+02 Score=26.71 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 022587 84 EKQSMIKELNSYVALRKTYMN 104 (295)
Q Consensus 84 r~~~~~~eL~~~~~l~k~~~~ 104 (295)
++......|..+..++++|..
T Consensus 297 ~l~~ie~Rl~~l~~L~rKyg~ 317 (553)
T PRK10869 297 RLAELEQRLSKQISLARKHHV 317 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 344445555556667777754
No 164
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.80 E-value=3.1e+02 Score=24.19 Aligned_cols=70 Identities=13% Similarity=0.262 Sum_probs=35.6
Q ss_pred HhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 26 SNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTY 102 (295)
Q Consensus 26 ~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~~~l~k~~ 102 (295)
...|..|++....++-...+.++...+.+..+-|+.+..-.+.+ .|+.+.....-.+.| .+.|+..++-|
T Consensus 106 eaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~v----tpedk~~v~~~y~~~---~~~wrk~krmf 175 (201)
T KOG4603|consen 106 EAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHV----TPEDKEQVYREYQKY---CKEWRKRKRMF 175 (201)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33445555544445555666666666666666677666444433 344444443333333 33344444444
No 165
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=35.77 E-value=8.6e+02 Score=29.34 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=13.9
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 180 TDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (295)
Q Consensus 180 rEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr 210 (295)
...+.++..++++-...+....+.++.+..+
T Consensus 1075 e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~ 1105 (1930)
T KOG0161|consen 1075 ESELSQLQSKLEDEQAEVAQLQKQIKELEAR 1105 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 166
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=35.66 E-value=50 Score=27.99 Aligned_cols=9 Identities=33% Similarity=0.254 Sum_probs=5.1
Q ss_pred chhhhccCC
Q 022587 109 KKVELFDMG 117 (295)
Q Consensus 109 ~R~~Lf~~~ 117 (295)
.+..||...
T Consensus 69 ~k~~LF~~~ 77 (145)
T PF10661_consen 69 IKNSLFTNK 77 (145)
T ss_pred HHHHhCcCc
Confidence 356677543
No 167
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=35.43 E-value=87 Score=20.42 Aligned_cols=10 Identities=30% Similarity=0.314 Sum_probs=4.8
Q ss_pred hHHHHHHHHH
Q 022587 215 KCIMLFLFLI 224 (295)
Q Consensus 215 K~il~~iili 224 (295)
+||.+.+..|
T Consensus 15 ~Wi~F~l~mi 24 (38)
T PF09125_consen 15 GWIAFALAMI 24 (38)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4555554443
No 168
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=35.33 E-value=65 Score=28.40 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=5.0
Q ss_pred hhhHHHHHhh
Q 022587 248 QWQFSIFCLL 257 (295)
Q Consensus 248 ~~~~~~~~~~ 257 (295)
+-.|=+-|-.
T Consensus 44 ~~~fC~sCH~ 53 (185)
T TIGR02161 44 TEEFCISCHE 53 (185)
T ss_pred CcchHHHhcc
Confidence 4455555644
No 169
>PRK10780 periplasmic chaperone; Provisional
Probab=34.92 E-value=2.8e+02 Score=23.47 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 022587 9 PQLEQIHGEIRDNFRALSNGFQKL 32 (295)
Q Consensus 9 ~~~e~ye~e~~~l~~~l~~~~~kl 32 (295)
..|+.++.++...-.++.+..+++
T Consensus 50 ~~~~~~q~el~~~~~elq~~~~~~ 73 (165)
T PRK10780 50 NEFKGRASELQRMETDLQAKMQKL 73 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554
No 170
>PF13514 AAA_27: AAA domain
Probab=34.57 E-value=7e+02 Score=27.91 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=35.0
Q ss_pred HHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 171 QTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVA 212 (295)
Q Consensus 171 ~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~ 212 (295)
+.++.|..++.........+......+.....-+....+++.
T Consensus 286 ~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 286 AEIEALEEQRGEYRKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445688889888999999999999999888888888887775
No 171
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.51 E-value=8.1e+02 Score=28.68 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcc
Q 022587 15 HGEIRDNFRALSNGFQKLDKI 35 (295)
Q Consensus 15 e~e~~~l~~~l~~~~~kl~~~ 35 (295)
+.+.+.-+..++..++.|.++
T Consensus 860 ~~~~~~~~~~~~~~~~~l~~~ 880 (1486)
T PRK04863 860 EQQQRSQLEQAKEGLSALNRL 880 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344455555566666666553
No 172
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=34.44 E-value=5.5e+02 Score=26.70 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 46 EELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTY 102 (295)
Q Consensus 46 ~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~~~l~k~~ 102 (295)
.++...+....+-|+.|+-=..-+.....++.|.+|..- +++|++.+++++-+.
T Consensus 8 ~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~D---LKkEIKKLQRlRdQI 61 (575)
T KOG2150|consen 8 QEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESD---LKKEIKKLQRLRDQI 61 (575)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 334444444444444444222222222233455555533 333333344444443
No 173
>PTZ00370 STEVOR; Provisional
Probab=34.30 E-value=45 Score=31.52 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhc
Q 022587 54 ECKRLIKEMDREIK 67 (295)
Q Consensus 54 ea~~lL~qmelE~r 67 (295)
|.++.+++|+.|+-
T Consensus 58 emK~i~d~~n~eai 71 (296)
T PTZ00370 58 ELKEIIDKMNEEAI 71 (296)
T ss_pred HHHHHHHHHhHHHh
Confidence 45555666665443
No 174
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=34.03 E-value=82 Score=19.38 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 022587 222 FLIVCGVIAIIVVKV 236 (295)
Q Consensus 222 ilili~iI~iii~~~ 236 (295)
++++++++++.+|..
T Consensus 9 ~llv~lLl~YLvYAL 23 (29)
T PRK14750 9 ALLVLLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556666777766
No 175
>PHA03030 hypothetical protein; Provisional
Probab=33.53 E-value=31 Score=27.69 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhcccc
Q 022587 226 CGVIAIIVVKVLTHIKSQ 243 (295)
Q Consensus 226 i~iI~iii~~~~~~~~~~ 243 (295)
+++|++++|+.++.||-+
T Consensus 10 ~lfifl~iffYI~~IkRD 27 (122)
T PHA03030 10 FLFIFLFIFFYIRIIKRD 27 (122)
T ss_pred HHHHHHHHHHHheeeecc
Confidence 344555555666666644
No 176
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=33.02 E-value=53 Score=24.87 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHH
Q 022587 215 KCIMLFLFLIVC 226 (295)
Q Consensus 215 K~il~~iilili 226 (295)
|+++.+++++++
T Consensus 5 kii~iii~li~i 16 (85)
T PF11337_consen 5 KIILIIIILIVI 16 (85)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 177
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=32.59 E-value=37 Score=29.81 Aligned_cols=18 Identities=6% Similarity=0.322 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 022587 222 FLIVCGVIAIIVVKVLTH 239 (295)
Q Consensus 222 ilili~iI~iii~~~~~~ 239 (295)
+++++++++++.|.++..
T Consensus 27 ~llll~~~G~~~~~~~~~ 44 (182)
T PRK08455 27 VVLLLLIVGVIAMLLMGS 44 (182)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 333344445555555433
No 178
>PRK11281 hypothetical protein; Provisional
Probab=32.58 E-value=7.8e+02 Score=27.88 Aligned_cols=22 Identities=14% Similarity=0.413 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022587 42 TKQLEELTGRMRECKRLIKEMD 63 (295)
Q Consensus 42 ~~~l~~le~~l~ea~~lL~qme 63 (295)
++.+..+..+++++.+-|+.+.
T Consensus 86 ~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 86 KQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHhHHHHHHHHHHHHHhh
Confidence 3445555555555555555444
No 179
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=32.36 E-value=73 Score=33.48 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022587 216 CIMLFLFLIVCGVIAIIVVK 235 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~ 235 (295)
+|++.||+|+.+||++++|.
T Consensus 395 ~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 395 IIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666
No 180
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.02 E-value=2.3e+02 Score=25.90 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=22.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 022587 182 QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIM 218 (295)
Q Consensus 182 qL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il 218 (295)
+|+.+.+....+..+|.++.++..-.--|-++|+.++
T Consensus 154 kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~ 190 (236)
T KOG3287|consen 154 KLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQ 190 (236)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4566666666777777777766555555555555443
No 181
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=31.84 E-value=2.3e+02 Score=21.55 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccC-----ChhHHHHHHHHHHHHHHHHHHHH
Q 022587 9 PQLEQIHGEIRDNFRALSNGFQKLDKIK-----DSNRQTKQLEELTGRMRECKRLI 59 (295)
Q Consensus 9 ~~~e~ye~e~~~l~~~l~~~~~kl~~~~-----~~~~r~~~l~~le~~l~ea~~lL 59 (295)
+++..+|.++..+..++...+.+.-+.. .++++...+.+++..+.+|..+-
T Consensus 22 ~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~ 77 (105)
T PF12998_consen 22 TLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELS 77 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666677666666666532211 22456666666666666666443
No 182
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=31.73 E-value=2.8e+02 Score=28.45 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 022587 83 DEKQSMIKELN 93 (295)
Q Consensus 83 ~r~~~~~~eL~ 93 (295)
+|...++++++
T Consensus 433 ~Kc~~~Ksd~d 443 (531)
T PF15450_consen 433 DKCDLHKSDSD 443 (531)
T ss_pred HHHHHHHhhhh
Confidence 33334444443
No 183
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=31.73 E-value=62 Score=27.05 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=14.0
Q ss_pred hchHHHHHH-HHHHHHHHHHHHHHHHhh
Q 022587 213 TDKCIMLFL-FLIVCGVIAIIVVKVLTH 239 (295)
Q Consensus 213 tdK~il~~i-ilili~iI~iii~~~~~~ 239 (295)
..|++++++ +++++++++...|+++.+
T Consensus 2 kkkl~~i~~i~l~~l~~~g~~~~~~~~~ 29 (142)
T PRK07718 2 KNKLIKIMLIILIVIALIGTAALVLVMG 29 (142)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456565554 444455555555555443
No 184
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=31.72 E-value=24 Score=30.96 Aligned_cols=59 Identities=14% Similarity=0.288 Sum_probs=34.1
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhhhHHHHH---hhccCccccCCCC
Q 022587 205 KEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVLTHIK---SQHNFQQWQFSIFC---LLSMNFQVVNPNN 268 (295)
Q Consensus 205 ~~m~Rr~~tdK~il~~iilili~iI~iii~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 268 (295)
..+++|+-+-++|++. ++++.+++++|+||.+|+-- ++-.+|. -.| +|.|-..-.||+.
T Consensus 76 ~~v~~rlk~t~lI~~a-lAfl~Cv~~Lv~YKa~wYDqsCPdGFv~kh----k~C~P~~LemYY~eqdp~~ 140 (186)
T PF06387_consen 76 EEVSERLKVTRLIAFA-LAFLGCVVFLVMYKAIWYDQSCPDGFVLKH----KRCTPLTLEMYYTEQDPER 140 (186)
T ss_pred cccccccchhHHHHHH-HHHHHHHHHHHhheeeeecccCCCcceeec----ccccchhhhheecccCCCc
Confidence 4566777777766655 45566777888888866532 1222221 124 3556556566655
No 185
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=31.63 E-value=64 Score=25.07 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 022587 221 LFLIVCGVIAIIVVKVLTHIK 241 (295)
Q Consensus 221 iilili~iI~iii~~~~~~~~ 241 (295)
++.+++++++++.|+ +++++
T Consensus 10 ~~~v~~~i~~y~~~k-~~ka~ 29 (87)
T PF10883_consen 10 VGAVVALILAYLWWK-VKKAK 29 (87)
T ss_pred HHHHHHHHHHHHHHH-HHHHH
Confidence 334444444444444 34443
No 186
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=31.60 E-value=1.3e+02 Score=21.77 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHh
Q 022587 199 KASQLVKEIGRQV 211 (295)
Q Consensus 199 rs~r~L~~m~Rr~ 211 (295)
.|..-|+.|+|+-
T Consensus 10 TA~~FL~RvGr~q 22 (60)
T PF06072_consen 10 TATEFLRRVGRQQ 22 (60)
T ss_pred cHHHHHHHHhHHH
Confidence 3556677777764
No 187
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=31.53 E-value=1.4e+02 Score=23.67 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=22.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 74 PPEVNKQLNDEKQSMIKELNSYVALRKTYM 103 (295)
Q Consensus 74 ~~~~r~~~~~r~~~~~~eL~~~~~l~k~~~ 103 (295)
+|.+.. -..|...+...|...+++...|.
T Consensus 72 ~p~y~~-~K~Rc~yL~~KL~HIK~~I~~yD 100 (101)
T PF07303_consen 72 DPNYQE-KKKRCEYLHNKLSHIKQLIQDYD 100 (101)
T ss_dssp SHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHH-HHHHHHHHHHHHHHHHHHHHHcc
Confidence 556643 35688899999999998888774
No 188
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=31.51 E-value=4.5e+02 Score=24.81 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=31.4
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 022587 180 TDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIV 225 (295)
Q Consensus 180 rEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilil 225 (295)
-.-|.++++.+...+..|.+|..+=+.-.|.- +|+|.++++++
T Consensus 229 D~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~---~~~Llil~vv~ 271 (283)
T COG5325 229 DFNIENTSDNLKNANKELEKAPAHQRRTKKCR---FYLLLILLVVL 271 (283)
T ss_pred hhhhhhhhHHHHhhHHHHHHhHHHHhhhccch---hhHHHHHHHHH
Confidence 35677899999999999999999888877765 44444444433
No 189
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.39 E-value=68 Score=26.47 Aligned_cols=11 Identities=9% Similarity=0.446 Sum_probs=5.8
Q ss_pred HHHHhhccCcc
Q 022587 252 SIFCLLSMNFQ 262 (295)
Q Consensus 252 ~~~~~~~~~~~ 262 (295)
.+||..-++..
T Consensus 84 i~y~irR~~Kk 94 (122)
T PF01102_consen 84 ISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHS--
T ss_pred HHHHHHHHhcc
Confidence 36887755543
No 190
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=31.19 E-value=3.8e+02 Score=23.86 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHH
Q 022587 46 EELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNS 94 (295)
Q Consensus 46 ~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~ 94 (295)
.+++.++..++..++++..|+-.... .+|...-+...-.+.|....|.
T Consensus 119 ~el~kklnslkk~~e~lr~el~k~~e-~dpqv~~k~~~~~K~~~eaanr 166 (203)
T KOG3433|consen 119 DELTKKLNSLKKILESLRWELAKIQE-TDPQVFEKKVHLEKTMAEAANR 166 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHhh
Confidence 37778888888888888888877655 3444443333333344444444
No 191
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=30.98 E-value=98 Score=21.08 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhc
Q 022587 229 IAIIVVKVLTHI 240 (295)
Q Consensus 229 I~iii~~~~~~~ 240 (295)
|++.||-.++.|
T Consensus 21 iGl~IyQkikqI 32 (49)
T PF11044_consen 21 IGLSIYQKIKQI 32 (49)
T ss_pred HHHHHHHHHHHH
Confidence 677777766544
No 192
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.96 E-value=5.5e+02 Score=25.66 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCChhH
Q 022587 10 QLEQIHGEIRDNFRALSNGFQKLDKIKDSNR 40 (295)
Q Consensus 10 ~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~ 40 (295)
+.+.|.+||.....++.+.-++..+ .+++.
T Consensus 273 ek~kyqeEfe~~q~elek~k~efkk-~hpd~ 302 (497)
T KOG3838|consen 273 EKAKYQEEFEWAQLELEKRKDEFKK-SHPDA 302 (497)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhcc-CCchh
Confidence 5567888888887777666555554 34443
No 193
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=30.88 E-value=1.2e+02 Score=25.32 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=34.4
Q ss_pred HHHHHHHhhhc---hHHHHHHHHHHHHHHHHHHHHHHhhccccccch--hhhHHHHHh
Q 022587 204 VKEIGRQVATD---KCIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQ--QWQFSIFCL 256 (295)
Q Consensus 204 L~~m~Rr~~td---K~il~~iilili~iI~iii~~~~~~~~~~~~~~--~~~~~~~~~ 256 (295)
++.+.++++.. +++++++.+++.+++=-|+|++....=-++.|= +.....||.
T Consensus 43 ~k~~~k~s~~ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~QlTt~gyvp 100 (130)
T PF08627_consen 43 IKDFLKQSYSKENFKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQLTTFGYVP 100 (130)
T ss_pred HHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhcccceeh
Confidence 55566655443 466666667777788888888888877777765 433444443
No 194
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=30.84 E-value=3e+02 Score=22.61 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022587 9 PQLEQIHGEIRDNFRALSNGFQKLDKI---KDSNRQTKQLEELTGRMRECKRLIKEMDREIK 67 (295)
Q Consensus 9 ~~~e~ye~e~~~l~~~l~~~~~kl~~~---~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r 67 (295)
..++.+..++...-.+++...+++.+. ...+++...-.+++....+.......+..++.
T Consensus 43 ~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 104 (158)
T PF03938_consen 43 EKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQ 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555656655555555555431 13355666666666666666665555554443
No 195
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=30.76 E-value=1.3e+02 Score=21.68 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=15.2
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 022587 207 IGRQVATDKCIMLFLFLIVCGVIAIIVVK 235 (295)
Q Consensus 207 m~Rr~~tdK~il~~iilili~iI~iii~~ 235 (295)
+.++-.+.+-..++.+++++++++++++.
T Consensus 28 ~~k~qk~~~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 28 YRKRQKRMRKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444545666556555555555553
No 196
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=30.72 E-value=3.2e+02 Score=22.81 Aligned_cols=46 Identities=11% Similarity=0.288 Sum_probs=27.5
Q ss_pred HHHHHhhhhhhhccCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhchh
Q 022587 22 FRALSNGFQKLDKIKDSNRQTKQLEELTG-RMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 22 ~~~l~~~~~kl~~~~~~~~r~~~l~~le~-~l~ea~~lL~qmelE~r~l 69 (295)
+.-+...+.++.. .+..+...++..+. ..+....+|++++.|-+.+
T Consensus 24 i~~l~~kiek~r~--n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~L 70 (129)
T PF15372_consen 24 IIILREKIEKIRG--NPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSL 70 (129)
T ss_pred HHHHHHHHHHHhC--CCccccHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 3344666666654 23334444444433 5577888999999777765
No 197
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=30.61 E-value=3.8e+02 Score=23.68 Aligned_cols=61 Identities=13% Similarity=0.185 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 022587 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI 207 (295)
Q Consensus 147 ~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m 207 (295)
.+..-...|+.+...+..++.+....-.+|.+++.-|...+.+++.+...|..++.-+..-
T Consensus 110 q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 110 QLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788888888888889999999999999999999999999999999998766544
No 198
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=30.29 E-value=46 Score=24.41 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022587 218 MLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 218 l~~iilili~iI~iii~~~ 236 (295)
||+++-|+++++++|....
T Consensus 1 MWIiiSIvLai~lLI~l~~ 19 (66)
T PF07438_consen 1 MWIIISIVLAIALLISLSV 19 (66)
T ss_pred ChhhHHHHHHHHHHHHHhh
Confidence 4566666666666665544
No 199
>PHA02911 C-type lectin-like protein; Provisional
Probab=30.13 E-value=2.8e+02 Score=25.00 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=11.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHH
Q 022587 213 TDKCIMLFLFLIVCGVIAIIVV 234 (295)
Q Consensus 213 tdK~il~~iilili~iI~iii~ 234 (295)
+.|+++.+.++.++..|+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~ 47 (213)
T PHA02911 26 KEKLALIIACLCLILTIIIICL 47 (213)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 4577666655555544444443
No 200
>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains. The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....
Probab=29.92 E-value=1.8e+02 Score=21.40 Aligned_cols=13 Identities=38% Similarity=0.386 Sum_probs=5.2
Q ss_pred HHHHhhhhhhhcc
Q 022587 23 RALSNGFQKLDKI 35 (295)
Q Consensus 23 ~~l~~~~~kl~~~ 35 (295)
..|.+.+-+||.+
T Consensus 34 E~L~~~LlkLD~I 46 (76)
T PF02179_consen 34 EMLMQLLLKLDSI 46 (76)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCc
Confidence 3333334444443
No 201
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.78 E-value=4.3e+02 Score=24.06 Aligned_cols=47 Identities=9% Similarity=0.212 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHH
Q 022587 44 QLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSY 95 (295)
Q Consensus 44 ~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~ 95 (295)
.|..-...++.-..+|+++.-|+..|. ..|..+.+.++...++.+.+
T Consensus 19 ~i~~e~~~~e~ee~~L~e~~kE~~~L~-----~Er~~h~eeLrqI~~DIn~l 65 (230)
T PF10146_consen 19 EILQEVESLENEEKCLEEYRKEMEELL-----QERMAHVEELRQINQDINTL 65 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555555541 12333444444444444443
No 202
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=29.67 E-value=70 Score=28.99 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=26.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022587 206 EIGRQVATDKCIMLFLFLIVCGVIAIIVVKVLTHI 240 (295)
Q Consensus 206 ~m~Rr~~tdK~il~~iilili~iI~iii~~~~~~~ 240 (295)
++..|....|.-++|=|+|.|++|+|||+....+.
T Consensus 2 Rf~~r~KrRK~N~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 2 RFQQRQKRRKTNKILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred chhHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhee
Confidence 35667777888888888888888888888774444
No 203
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=29.65 E-value=2.5e+02 Score=21.74 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=35.6
Q ss_pred HHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHhhhchHHHHHHHH
Q 022587 176 LKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG---RQVATDKCIMLFLFL 223 (295)
Q Consensus 176 L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~---Rr~~tdK~il~~iil 223 (295)
|..-++.+..+...+......+.....-.+... |+..++++|--+.++
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~l 53 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAIL 53 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444556666777788888888888877777776 889999988776544
No 204
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=29.62 E-value=5.8e+02 Score=25.45 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=51.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 140 LIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (295)
Q Consensus 140 ~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr 210 (295)
++.......|++-+.+.....-+.+||++ |.-.|+.+|.+|-+..=.+.---.-+.-..-+-.-++-+
T Consensus 305 LLEaYf~qiD~~~nk~~~Lre~IddTEd~---InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMN 372 (414)
T KOG2662|consen 305 LLEAYFMQIDSTLNKLESLREYIDDTEDI---INIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMN 372 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44556677888999999999999999987 445788899998888877777666666666665555544
No 205
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=29.49 E-value=6.4e+02 Score=25.91 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHH
Q 022587 14 IHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLI 59 (295)
Q Consensus 14 ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL 59 (295)
.+.++..+-..|......|..+ +-+.....+..++..|+.+-+.+
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l-~l~~~~~~~~~i~~~Id~Lyd~l 298 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL-DLDEAEEKNEEIQERIDQLYDIL 298 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444434334442 33455555666666666554433
No 206
>PHA02902 putative IMV membrane protein; Provisional
Probab=29.46 E-value=83 Score=23.14 Aligned_cols=23 Identities=4% Similarity=0.327 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 022587 219 LFLFLIVCGVIAIIVVKVLTHIK 241 (295)
Q Consensus 219 ~~iilili~iI~iii~~~~~~~~ 241 (295)
+.|.++.++|+++++|..-++.|
T Consensus 6 fvi~~v~v~Ivclliya~YrR~k 28 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAYKRYK 28 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556777777777755544
No 207
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=29.31 E-value=62 Score=30.78 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhhHHHHHhhccCccccCCCCC
Q 022587 223 LIVCGVIAIIVVKVLTHIKSQHNFQQWQFSIFCLLSMNFQVVNPNNK 269 (295)
Q Consensus 223 lili~iI~iii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (295)
++++++++++++++++..+-......|.-..-=.|..+|..|-..+.
T Consensus 9 ~~l~~l~~y~~~y~~G~~~N~~~A~~w~~~~~~~L~~~Fa~VG~~~~ 55 (321)
T PF07946_consen 9 IFLAFLLLYVVNYFIGKSKNRRIAKAWFESHQPLLESNFALVGDDGS 55 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Confidence 35566777777788888888888889988888889999999987764
No 208
>PRK11637 AmiB activator; Provisional
Probab=29.20 E-value=5.6e+02 Score=25.13 Aligned_cols=29 Identities=14% Similarity=0.467 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 41 QTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 41 r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
-...|..++..+++.+.-|+..+.++..+
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l 108 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDEL 108 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666655554
No 209
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=29.17 E-value=3.3e+02 Score=23.79 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 022587 79 KQLNDEKQSMIKELNS 94 (295)
Q Consensus 79 ~~~~~r~~~~~~eL~~ 94 (295)
+.+.+|...+..+|+.
T Consensus 147 k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 147 KTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566666666666
No 210
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.87 E-value=3.4e+02 Score=22.99 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHH
Q 022587 42 TKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNS 94 (295)
Q Consensus 42 ~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~ 94 (295)
...+.+++..+.+.+.-++.+..|+..+.+ .|+. ..+...+..+.+++..
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~-~~t~--~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSS-EPTN--EELREEIEELEEEIEE 127 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCH--HHHHHHHHHHHHHHHH
Confidence 446888888999999999999999998866 2332 3455555555555444
No 211
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=28.82 E-value=2.3e+02 Score=21.87 Aligned_cols=6 Identities=0% Similarity=0.357 Sum_probs=2.3
Q ss_pred HHHHHH
Q 022587 217 IMLFLF 222 (295)
Q Consensus 217 il~~ii 222 (295)
+|++++
T Consensus 37 vLVic~ 42 (84)
T PF06143_consen 37 VLVICC 42 (84)
T ss_pred HHHHHH
Confidence 334333
No 212
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=28.60 E-value=75 Score=26.91 Aligned_cols=9 Identities=33% Similarity=0.401 Sum_probs=5.6
Q ss_pred chhhhccCC
Q 022587 109 KKVELFDMG 117 (295)
Q Consensus 109 ~R~~Lf~~~ 117 (295)
.+..||.+.
T Consensus 87 ~k~~LFs~~ 95 (145)
T PF10661_consen 87 TKDSLFSSD 95 (145)
T ss_pred HHHHhhccc
Confidence 467777643
No 213
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=28.09 E-value=35 Score=28.57 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHhhccCccccCCCC---CCCCCCCCCCCCccccccccccC
Q 022587 251 FSIFCLLSMNFQVVNPNN---KDIRDIPGLAPPAPARRLLSLQA 291 (295)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 291 (295)
|.+---+--..+.||.|+ .++..+||+-|.. ++++..+..
T Consensus 40 N~~d~kl~~~~~kIdiN~A~~~el~~lpGigP~~-A~~IV~nGp 82 (132)
T PRK02515 40 NVADAKLGEFGEKIDLNNSSVRAFRQFPGMYPTL-AGKIVKNAP 82 (132)
T ss_pred ChhhHHHHhcCCcccCCccCHHHHHHCCCCCHHH-HHHHHHCCC
Confidence 444434445678899999 4556799998854 777775433
No 214
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=27.96 E-value=4.3e+02 Score=23.39 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.5
Q ss_pred HHHHHH
Q 022587 10 QLEQIH 15 (295)
Q Consensus 10 ~~e~ye 15 (295)
.+..|-
T Consensus 92 ~L~ey~ 97 (216)
T cd07627 92 TLDEYI 97 (216)
T ss_pred HHHHHH
Confidence 344444
No 215
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.87 E-value=3.4e+02 Score=22.23 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=21.7
Q ss_pred HHHHHhhhHHHhhHHHHHHHHHHHHHHHH
Q 022587 173 ATTLKGQTDQMGRIVNELDTIQFSIKKAS 201 (295)
Q Consensus 173 l~~L~~QrEqL~r~~~~l~~~d~~l~rs~ 201 (295)
|++|+.-.++|..........-..|+|-.
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888877777776654
No 216
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=27.83 E-value=4.5e+02 Score=24.01 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhcc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 13 QIHGEIRDNFRALSNGFQK-LDKI-----KDSNRQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 13 ~ye~e~~~l~~~l~~~~~k-l~~~-----~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
.||-+|-.++..+-..+++ ++-. .+++ -...|.+++..++....-|..|-.|.-.+
T Consensus 79 ~yEweyl~~L~r~V~~cn~~I~~a~~~~~~t~e-e~~kI~e~~e~~~~~d~sIg~lg~e~dal 140 (258)
T COG5200 79 EYEWEYLRLLVRIVLSCNDGIRAAGLEDRTTPE-EFGKIKEKEELFNRVDESIGELGMEGDAL 140 (258)
T ss_pred hhhHHHHHHHHHHHHHhcchhhhhhhhccCCHH-HHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4788887777665544432 2210 1222 23467778888888888888887777766
No 217
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.48 E-value=5.5e+02 Score=26.75 Aligned_cols=84 Identities=13% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHH
Q 022587 16 GEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSY 95 (295)
Q Consensus 16 ~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~ 95 (295)
.+...-+.+++..+..+.. ..+.....+..++..++++..-+...+.+.+...+ .-.+.|..+..++..+..++...
T Consensus 205 ~~~~~~~~~le~el~~l~~--~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG-~~~~~r~~Le~ei~~le~e~~e~ 281 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSE--KYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG-DLFEEREQLERQLKEIEAARKAN 281 (650)
T ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 022587 96 VALRKTY 102 (295)
Q Consensus 96 ~~l~k~~ 102 (295)
....+.+
T Consensus 282 ~~~l~~l 288 (650)
T TIGR03185 282 RAQLREL 288 (650)
T ss_pred HHHHHHH
No 218
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=27.30 E-value=1.4e+02 Score=23.67 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=5.5
Q ss_pred CCCCCCCCCCc
Q 022587 271 IRDIPGLAPPA 281 (295)
Q Consensus 271 ~~~~~~~~~~~ 281 (295)
++..|--+||+
T Consensus 76 ~~~~~~~~pP~ 86 (102)
T PF11669_consen 76 IRVLSPYKPPS 86 (102)
T ss_pred cccCCCCCCCC
Confidence 44444455554
No 219
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=27.29 E-value=1.2e+02 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 022587 219 LFLFLIVCGVIAIIVVKVLTH 239 (295)
Q Consensus 219 ~~iilili~iI~iii~~~~~~ 239 (295)
.+..+++.+++.+-+||++++
T Consensus 24 ~ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 24 TIGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344566677788888888765
No 220
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.24 E-value=58 Score=22.29 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022587 219 LFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 219 ~~iilili~iI~iii~~~ 236 (295)
++|..+++++.++.+|.-
T Consensus 12 i~i~~lL~~~TgyaiYta 29 (46)
T PRK13183 12 ITILAILLALTGFGIYTA 29 (46)
T ss_pred HHHHHHHHHHhhheeeec
Confidence 344455566666777766
No 221
>PF15050 SCIMP: SCIMP protein
Probab=27.23 E-value=1.6e+02 Score=24.38 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=7.7
Q ss_pred CCCCCCCccccccccc
Q 022587 274 IPGLAPPAPARRLLSL 289 (295)
Q Consensus 274 ~~~~~~~~~~~~~~~~ 289 (295)
-|+--||-|.|-+++.
T Consensus 65 ~~~~LPpLPPRg~~s~ 80 (133)
T PF15050_consen 65 SPVQLPPLPPRGSPSP 80 (133)
T ss_pred CcCCCCCCCCCCCCCc
Confidence 4444455555544443
No 222
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=27.15 E-value=1.4e+02 Score=24.19 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHHHH--HHHhhccccccchhhh
Q 022587 214 DKCIMLFLFLIVCGVIAIIVV--KVLTHIKSQHNFQQWQ 250 (295)
Q Consensus 214 dK~il~~iilili~iI~iii~--~~~~~~~~~~~~~~~~ 250 (295)
-|.|.+.+++++++++++++- ..+.+++ ++.-+.|.
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~-~~~~~~~~ 78 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHID-GDRDRGWA 78 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCcccch
Confidence 466777777777666655553 3444544 44444443
No 223
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=26.94 E-value=2.8e+02 Score=20.90 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHHHHHHHHH---HhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 6 QMSPQLEQIHGEIRDNFRAL---SNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDR 64 (295)
Q Consensus 6 ~ms~~~e~ye~e~~~l~~~l---~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmel 64 (295)
+.++++...+.||..+.-+. +.....++...+...|+.... +.+.+++.||.
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~-------~l~~lv~~mE~ 68 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQ-------ELEELVKRMEA 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHH-------HHHHHHHHHHH
Confidence 45667777777666554433 333556655322223333222 44456666654
No 224
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.86 E-value=9.2e+02 Score=26.91 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 79 KQLNDEKQSMIKELNSYVALRKTY 102 (295)
Q Consensus 79 ~~~~~r~~~~~~eL~~~~~l~k~~ 102 (295)
..-..|-.+++.|+...+....++
T Consensus 321 EmAEERaesLQ~eve~lkEr~del 344 (1243)
T KOG0971|consen 321 EMAEERAESLQQEVEALKERVDEL 344 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777766644333333
No 225
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=26.83 E-value=4.1e+02 Score=23.59 Aligned_cols=33 Identities=9% Similarity=-0.004 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHH
Q 022587 160 MVVEQTIEVGTQTATTLKGQTDQMGRIVNELDT 192 (295)
Q Consensus 160 r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~ 192 (295)
+-+...++.=...+.+-..|.|.-.+.-..++.
T Consensus 108 ~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~ 140 (204)
T PF00517_consen 108 KEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDS 140 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcccHHHHHHHHHHHHhchhhhhhhhcCCcH
Confidence 333333333344455555565555554444544
No 226
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=26.70 E-value=1.2e+02 Score=19.88 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 022587 223 LIVCGVIAIIVVK 235 (295)
Q Consensus 223 lili~iI~iii~~ 235 (295)
++++++|.+||+.
T Consensus 17 llflv~imliif~ 29 (43)
T PF11395_consen 17 LLFLVIIMLIIFW 29 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 227
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.61 E-value=4e+02 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.506 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 39 NRQTKQLEELTGRMRECKRLIKEMDR 64 (295)
Q Consensus 39 ~~r~~~l~~le~~l~ea~~lL~qmel 64 (295)
+.....+..+...|.++...|+.|.-
T Consensus 23 ~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 23 DKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666677777777777776664
No 228
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=26.55 E-value=63 Score=20.66 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=19.9
Q ss_pred hHHHHHhhccCccccCCCCCCCCCCCCCCCCccccccc
Q 022587 250 QFSIFCLLSMNFQVVNPNNKDIRDIPGLAPPAPARRLL 287 (295)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (295)
||..||+|.- |. ..+|+++||.-| ..+.+||
T Consensus 3 q~~~~~~L~G--D~----~dni~Gv~giG~-ktA~~ll 33 (36)
T smart00279 3 QLIDYAILVG--DY----SDNIPGVKGIGP-KTALKLL 33 (36)
T ss_pred HHHHHHHHhC--cC----CCCCCCCCcccH-HHHHHHH
Confidence 6888888864 22 246888999876 3344443
No 229
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=26.53 E-value=9.6e+02 Score=27.02 Aligned_cols=62 Identities=10% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 150 ETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 150 ~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
.....+......+.+...-=..+-..|..-++........++.....+......+.....+.
T Consensus 853 ~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444445555555555555555555555555555544444443
No 230
>PRK04863 mukB cell division protein MukB; Provisional
Probab=26.23 E-value=1.1e+03 Score=27.63 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 022587 147 TMDETDQAIKRSQMVV 162 (295)
Q Consensus 147 ~l~~t~~~L~~s~r~l 162 (295)
.+.+....+.+....+
T Consensus 450 klee~e~qL~elE~kL 465 (1486)
T PRK04863 450 KEQEATEELLSLEQKL 465 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333343333333
No 231
>PF13997 YqjK: YqjK-like protein
Probab=26.21 E-value=2.7e+02 Score=20.60 Aligned_cols=39 Identities=8% Similarity=0.053 Sum_probs=33.5
Q ss_pred HHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 173 ATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 173 l~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
+....+||..|-...+...+.-+-++++-..+..+-+..
T Consensus 2 l~qi~qQR~~La~~~~~w~~~ta~~Dr~w~~l~~lr~~~ 40 (73)
T PF13997_consen 2 LRQIQQQRLDLAANAEPWLEATAPYDRGWQTLRSLRRHP 40 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhH
Confidence 356789999999999999999999999999988765544
No 232
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=25.97 E-value=1.2e+02 Score=23.19 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=7.0
Q ss_pred HHHhhhc-hHHHHHHHHHH
Q 022587 208 GRQVATD-KCIMLFLFLIV 225 (295)
Q Consensus 208 ~Rr~~td-K~il~~iilil 225 (295)
.+.+... |++++++++++
T Consensus 6 ~~~~~~~~~l~i~l~~~v~ 24 (97)
T PF04999_consen 6 IRDIKRQKKLIILLVIVVL 24 (97)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 3334344 34444333333
No 233
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=25.88 E-value=2.2e+02 Score=25.36 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 022587 12 EQIHGEIRDNFRAL 25 (295)
Q Consensus 12 e~ye~e~~~l~~~l 25 (295)
..|...+..+...-
T Consensus 20 ~kY~~al~~~~~a~ 33 (219)
T PF08397_consen 20 KKYQKALRAMSQAA 33 (219)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666655433
No 234
>PRK14758 hypothetical protein; Provisional
Probab=25.85 E-value=1.1e+02 Score=18.38 Aligned_cols=18 Identities=28% Similarity=0.622 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022587 216 CIMLFLFLIVCGVIAIIV 233 (295)
Q Consensus 216 ~il~~iilili~iI~iii 233 (295)
+=++++++|++++|..-.
T Consensus 7 FEliLivlIlCalia~~f 24 (27)
T PRK14758 7 FEFILIILILCALIAARF 24 (27)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555566666665443
No 235
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=25.65 E-value=2.8e+02 Score=22.14 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022587 220 FLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 220 ~iilili~iI~iii~~~ 236 (295)
+++++++.++.+.+|..
T Consensus 97 ~~~~~~lp~~a~~lY~~ 113 (117)
T TIGR03142 97 LVVVLLLPVLALGLYLK 113 (117)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555555554
No 236
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.62 E-value=85 Score=31.19 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=37.8
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHhhccccccchhhhHHHHHhhccCccccCCCCC
Q 022587 215 KCIMLFL-FLIVCGVIAIIVVKVLTHIKSQHNFQQWQFSIFCLLSMNFQVVNPNNK 269 (295)
Q Consensus 215 K~il~~i-ilili~iI~iii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (295)
||--|-+ |++|.+++++++-++++..+-...=++|-.+---+|..+|.+|-+++.
T Consensus 103 kw~sy~~E~~~v~~Ll~y~~nY~~GK~kN~klA~~wF~s~~s~le~nFa~vG~~~~ 158 (440)
T KOG2357|consen 103 KWYSYTVEIVMVAILLLYAANYFTGKRKNAKLAQAWFGSLRSLLEENFALVGDDGN 158 (440)
T ss_pred chhhhHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhheeCCCCC
Confidence 3443333 445556666666667666666666668877777788999999988875
No 237
>CHL00020 psbN photosystem II protein N
Probab=25.52 E-value=53 Score=22.18 Aligned_cols=19 Identities=5% Similarity=0.162 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022587 218 MLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 218 l~~iilili~iI~iii~~~ 236 (295)
.++|..+++++.++.+|.-
T Consensus 8 ~i~i~~ll~~~Tgy~iYta 26 (43)
T CHL00020 8 AIFISGLLVSFTGYALYTA 26 (43)
T ss_pred HHHHHHHHHHhhheeeeec
Confidence 3444455666777777766
No 238
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=25.25 E-value=7.6e+02 Score=25.38 Aligned_cols=58 Identities=14% Similarity=0.408 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccC---ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIK---DSNRQTKQLEELTGRMRECKRLIKEMDR 64 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~---~~~~r~~~l~~le~~l~ea~~lL~qmel 64 (295)
..+++..+...|-..+.+|..|..++..-. ....-...+..++..+.++...|+++++
T Consensus 213 IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l 273 (560)
T PF06160_consen 213 IPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLEL 273 (560)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 456778888888888888888888765421 1123444566666666666666666554
No 239
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=25.19 E-value=1.8e+02 Score=21.00 Aligned_cols=24 Identities=4% Similarity=0.221 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHH
Q 022587 200 ASQLVKEIGRQVATDKCIMLFLFL 223 (295)
Q Consensus 200 s~r~L~~m~Rr~~tdK~il~~iil 223 (295)
-..+|.+=.+|...-.++++++++
T Consensus 29 C~eil~ker~R~r~~~~~~~li~a 52 (64)
T COG4068 29 CGEILNKERKRQRNFMILMFLILA 52 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444444433
No 240
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=25.18 E-value=78 Score=28.21 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 022587 215 KCIMLFLFLIVCGVIAIIVVKVLTHIKSQHN 245 (295)
Q Consensus 215 K~il~~iilili~iI~iii~~~~~~~~~~~~ 245 (295)
|++||.++++-++.+.+++.+.+...+....
T Consensus 14 k~vm~~Ll~~Si~s~aiiieR~~~~~~~~~~ 44 (211)
T TIGR02797 14 KAVMIGLALASVVTWTIWIAKSVELAGARRR 44 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888877777888888776665555443
No 241
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=25.09 E-value=3.4e+02 Score=23.34 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhHHHh
Q 022587 170 TQTATTLKGQTDQMG 184 (295)
Q Consensus 170 ~~il~~L~~QrEqL~ 184 (295)
+++++++..|.|.++
T Consensus 72 Q~vlgd~At~gERl~ 86 (156)
T PF08372_consen 72 QNVLGDVATQGERLQ 86 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444455544443
No 242
>PHA03395 p10 fibrous body protein; Provisional
Probab=24.93 E-value=2.8e+02 Score=21.60 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHhhHHHHHHHHHHHH
Q 022587 144 GKKTMDETDQAIKRSQMVVEQTIEVG---TQTATTLKGQTDQMGRIVNELDTIQFSI 197 (295)
Q Consensus 144 ~~~~l~~t~~~L~~s~r~l~eTeeiG---~~il~~L~~QrEqL~r~~~~l~~~d~~l 197 (295)
-+.-....+..+...+..+.+...-- .++-+.|+.|..+|..+...|+.+++-|
T Consensus 9 Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diL 65 (87)
T PHA03395 9 IRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDIL 65 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 33445556666666666555543221 2445679999999999999998887654
No 243
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.70 E-value=1e+03 Score=26.75 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=13.0
Q ss_pred HHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022587 175 TLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (295)
Q Consensus 175 ~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~ 206 (295)
++..+.-.+..+...+......|..-..-++.
T Consensus 851 e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~ 882 (1174)
T KOG0933|consen 851 ELGNLEAKVDKVEKDVKKAQAELKDQKAKQRD 882 (1174)
T ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444433333333
No 244
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=24.70 E-value=1.9e+02 Score=21.66 Aligned_cols=54 Identities=11% Similarity=0.347 Sum_probs=24.1
Q ss_pred HHHHhhhchHHHHH-HHHHHHHHHHHHHHHHHhhcccc--ccchhhhHHHHHhhccC
Q 022587 207 IGRQVATDKCIMLF-LFLIVCGVIAIIVVKVLTHIKSQ--HNFQQWQFSIFCLLSMN 260 (295)
Q Consensus 207 m~Rr~~tdK~il~~-iilili~iI~iii~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 260 (295)
..||..+.-+++.+ .|++++.|..++++..+.++-|. +...+|..-.|-+|+-.
T Consensus 9 Y~rrSr~~efLF~ilfIvlmipI~pll~~~~i~~~~E~l~e~Y~~~~w~~F~~Lhnk 65 (72)
T PF13198_consen 9 YPRRSRKTEFLFFILFIVLMIPISPLLFVWIIGKIIEPLFELYKDWFWNPFNALHNK 65 (72)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 34444333333333 33334444444444444443222 23336666666666543
No 245
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=24.66 E-value=99 Score=26.44 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=11.5
Q ss_pred HHHhhhchHHHHHHHHHH
Q 022587 208 GRQVATDKCIMLFLFLIV 225 (295)
Q Consensus 208 ~Rr~~tdK~il~~iilil 225 (295)
-..-+.+|+|+.+.+.++
T Consensus 113 p~~gY~nklilaisvtvv 130 (154)
T PF14914_consen 113 PGYGYNNKLILAISVTVV 130 (154)
T ss_pred ccccccchhHHHHHHHHH
Confidence 334567898887765543
No 246
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.54 E-value=96 Score=22.48 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=12.6
Q ss_pred cccccchhhhHHHHHhh
Q 022587 241 KSQHNFQQWQFSIFCLL 257 (295)
Q Consensus 241 ~~~~~~~~~~~~~~~~~ 257 (295)
.++|-+.++.|-.+|.+
T Consensus 29 ~~~~~~~~~~~P~wC~l 45 (61)
T PF15284_consen 29 SSPHRKPANIKPVWCDL 45 (61)
T ss_pred hCCCCCCcCCCChHHhc
Confidence 44566678888889986
No 247
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=7.6e+02 Score=25.10 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHH
Q 022587 9 PQLEQIHGEIRDNFRALSNGF-QKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQS 87 (295)
Q Consensus 9 ~~~e~ye~e~~~l~~~l~~~~-~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~ 87 (295)
|++++|++++.... ++.... +++-.++..+++..+.++.+..++-+-.+-+..- |+.. . +.++=++++.++..
T Consensus 231 ee~eel~eq~eene-el~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~-e~l~--d--geayLaKL~~~l~~ 304 (521)
T KOG1937|consen 231 EEVEELTEQNEENE-ELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLI-EALD--D--GEAYLAKLMGKLAE 304 (521)
T ss_pred hhHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHH-HhcC--C--hHhHHHHHHHHHHH
Confidence 56788888887773 222222 2333333445555555555555553333222222 2222 1 23445556666555
Q ss_pred HHHHHHH
Q 022587 88 MIKELNS 94 (295)
Q Consensus 88 ~~~eL~~ 94 (295)
..+..-.
T Consensus 305 ~~~~~~~ 311 (521)
T KOG1937|consen 305 LNKQMEE 311 (521)
T ss_pred HHHHHHH
Confidence 5444433
No 248
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=24.36 E-value=4.6e+02 Score=22.53 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 022587 10 QLEQIHGEIRDNFRALSNGFQ 30 (295)
Q Consensus 10 ~~e~ye~e~~~l~~~l~~~~~ 30 (295)
.|..||+++..--.++..+++
T Consensus 35 ~f~AkEeeIErkKmeVrekVq 55 (159)
T PF04949_consen 35 AFRAKEEEIERKKMEVREKVQ 55 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 677777777665555544443
No 249
>PRK05529 cell division protein FtsQ; Provisional
Probab=24.33 E-value=60 Score=29.85 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=14.4
Q ss_pred HHHHHHHhhhchHHHHHHHHHH
Q 022587 204 VKEIGRQVATDKCIMLFLFLIV 225 (295)
Q Consensus 204 L~~m~Rr~~tdK~il~~iilil 225 (295)
++.+.||..+.|.++.+++.++
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~~~ 45 (255)
T PRK05529 24 VRRFTTRIRRRFILLACAVGAV 45 (255)
T ss_pred hhchhhhccchhhhHHHHHHHH
Confidence 7788888877766665544333
No 250
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.24 E-value=6.3e+02 Score=24.08 Aligned_cols=49 Identities=14% Similarity=0.338 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 17 EIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 17 e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
+|..-+.+|..+++.|.. .+-...+.++...|.+-++.|++++.++.++
T Consensus 52 ~fA~~ld~~~~kl~~Ms~----~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l 100 (301)
T PF06120_consen 52 EFADSLDELKEKLKEMSS----TQLRANIAKAEESIAAQKRAIEDLQKKIDSL 100 (301)
T ss_pred HHHHhhHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655543 4556666777777777777777766665554
No 251
>PHA02690 hypothetical protein; Provisional
Probab=24.21 E-value=3.3e+02 Score=20.87 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022587 187 VNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 187 ~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
+.-++.++..+..|+-.++.|-|
T Consensus 21 rrYLeAIqrhlEgs~plLR~~~R 43 (90)
T PHA02690 21 RRYLEAIQRHLEGSTPLLRQMWR 43 (90)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHH
Confidence 33455555555555555555543
No 252
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.14 E-value=1.1e+03 Score=26.93 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=15.8
Q ss_pred HHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 022587 176 LKGQTDQMGRIVNELDTIQFSIKKASQLVKEI 207 (295)
Q Consensus 176 L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m 207 (295)
|..=.+.|.+..+++.+...++...++..+.+
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~ 575 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLRKEERNL 575 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 33334445555555555555555555555433
No 253
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.04 E-value=6.6e+02 Score=24.23 Aligned_cols=80 Identities=14% Similarity=0.312 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHhchhccCCChhhhHHHHHHHHHH
Q 022587 10 QLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLI-KEMDREIKDEEARNPPEVNKQLNDEKQSM 88 (295)
Q Consensus 10 ~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL-~qmelE~r~l~~~~~~~~r~~~~~r~~~~ 88 (295)
.-+.||..-...+.+++++-..+..- =.+.+.+-+..|+++++-| ..++ +++.. ..+.+.++..+++.+
T Consensus 320 ~qet~eaKr~e~~~e~qrkEee~rqm-----FvqrvkekE~elke~Ekel~~kf~-~lkr~----h~eEk~kle~~rr~L 389 (406)
T KOG3859|consen 320 LQETYEAKRNEFLGELQRKEEEMRQM-----FVQRVKEKEAELKEAEKELHEKFD-RLKRL----HQEEKKKLEEKRKQL 389 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHH
Confidence 66777777777776666554444321 1123344444455544322 2222 22222 335566777777777
Q ss_pred HHHHHHHHHHH
Q 022587 89 IKELNSYVALR 99 (295)
Q Consensus 89 ~~eL~~~~~l~ 99 (295)
..+.+.|.+.+
T Consensus 390 eee~~~f~~rk 400 (406)
T KOG3859|consen 390 EEEVNAFQRRK 400 (406)
T ss_pred HHHHHHHHHHH
Confidence 77766654433
No 254
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.99 E-value=1.4e+02 Score=18.41 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 022587 222 FLIVCGVIAIIVVKV 236 (295)
Q Consensus 222 ilili~iI~iii~~~ 236 (295)
+++++.++++.+|..
T Consensus 9 ~ilv~lLlgYLvyAL 23 (29)
T PRK14748 9 VLLVFLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455666666666
No 255
>PRK14762 membrane protein; Provisional
Probab=23.73 E-value=95 Score=18.54 Aligned_cols=9 Identities=22% Similarity=0.464 Sum_probs=4.8
Q ss_pred hHHHHHHHH
Q 022587 215 KCIMLFLFL 223 (295)
Q Consensus 215 K~il~~iil 223 (295)
|+++|++.+
T Consensus 2 ki~lw~i~i 10 (27)
T PRK14762 2 KIILWAVLI 10 (27)
T ss_pred eeHHHHHHH
Confidence 456665543
No 256
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=23.60 E-value=3.1e+02 Score=24.93 Aligned_cols=21 Identities=5% Similarity=0.401 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 022587 39 NRQTKQLEELTGRMRECKRLI 59 (295)
Q Consensus 39 ~~r~~~l~~le~~l~ea~~lL 59 (295)
+.|-..|..+++.|++|+-.|
T Consensus 84 EkrD~~IQqLqk~LK~aE~iL 104 (272)
T KOG4552|consen 84 EKRDEVIQQLQKNLKSAEVIL 104 (272)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 334444444555554444433
No 257
>PF13166 AAA_13: AAA domain
Probab=23.60 E-value=8.4e+02 Score=25.34 Aligned_cols=15 Identities=7% Similarity=0.304 Sum_probs=7.0
Q ss_pred ccHHHHHHHHHHHHH
Q 022587 7 MSPQLEQIHGEIRDN 21 (295)
Q Consensus 7 ms~~~e~ye~e~~~l 21 (295)
+....+.|+..+..+
T Consensus 289 l~~~~~~~~~~~~~~ 303 (712)
T PF13166_consen 289 LEKAIKKLEKAIENI 303 (712)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555554433
No 258
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=23.60 E-value=7e+02 Score=24.38 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhh--hhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC-CChhhhHHHHH
Q 022587 7 MSPQLEQIHGEIRDNFRALSNGF--QKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEAR-NPPEVNKQLND 83 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l~~~~--~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~-~~~~~r~~~~~ 83 (295)
|-+.++++...|..+-+.|.+.- ...+++....+..+.+..+-....+.+...+++. +++.+-.. .+++.+.....
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~-~a~~~l~~~~D~em~ema~~ 83 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLE-DAKEMLAEEKDPEMREMAEE 83 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCHHHHHHHHH
Confidence 34556666666666655554331 1111111123334455555555555555555444 23322211 24555555555
Q ss_pred HHHHHHHHHHH
Q 022587 84 EKQSMIKELNS 94 (295)
Q Consensus 84 r~~~~~~eL~~ 94 (295)
.+..+..++..
T Consensus 84 Ei~~~~~~~~~ 94 (363)
T COG0216 84 EIKELEAKIEE 94 (363)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 259
>PF03994 DUF350: Domain of Unknown Function (DUF350) ; InterPro: IPR007140 This motif occurs in a small set of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.
Probab=23.43 E-value=50 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhh
Q 022587 220 FLFLIVCGVIAIIVVKVLTHIKSQHNFQQW 249 (295)
Q Consensus 220 ~iilili~iI~iii~~~~~~~~~~~~~~~~ 249 (295)
+++.+++.+++..++.++.+.+..+..+.+
T Consensus 2 ~~~g~~l~~~~~~~~~~~tp~~~~~eI~~~ 31 (54)
T PF03994_consen 2 GLVGIVLLLLGFFVFDLLTPYDLREEIKKG 31 (54)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHhCC
Confidence 344455566666666666666655555433
No 260
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=23.39 E-value=1.8e+02 Score=17.37 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022587 81 LNDEKQSMIKELNSYVAL 98 (295)
Q Consensus 81 ~~~r~~~~~~eL~~~~~l 98 (295)
|..++..|..+|..+++.
T Consensus 3 Yqakla~YqaeLa~vqk~ 20 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKA 20 (25)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567778888888775443
No 261
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=23.35 E-value=4.2e+02 Score=21.68 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=13.1
Q ss_pred HHHHHHHHHHh-hhchHHHHHHH
Q 022587 201 SQLVKEIGRQV-ATDKCIMLFLF 222 (295)
Q Consensus 201 ~r~L~~m~Rr~-~tdK~il~~ii 222 (295)
.+.++...||+ .-++.|+++++
T Consensus 49 ~~el~~L~rR~~li~~ai~~~~~ 71 (130)
T PF11026_consen 49 RRELRILRRRARLIRRAITLATL 71 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678888885 33444544443
No 262
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=23.23 E-value=2.1e+02 Score=20.86 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022587 218 MLFLFLIVCGVIAIIVVKVLT 238 (295)
Q Consensus 218 l~~iilili~iI~iii~~~~~ 238 (295)
+++++++++++.+++++...+
T Consensus 28 ~~i~~~I~~~V~~~l~~~~~~ 48 (84)
T PF02790_consen 28 MIIMIFIFVFVFYFLIYFLFN 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhheeeeEeeeccccccc
Confidence 333344444444444444433
No 263
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.07 E-value=5.1e+02 Score=22.65 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHH
Q 022587 37 DSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNS 94 (295)
Q Consensus 37 ~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~ 94 (295)
+.++|...+.+++.--.+.+.+-++++ .... .+|..=.++.......+..+|.
T Consensus 101 ~~~eR~~~l~~l~~l~~~~~~l~~el~----~~~~-~Dp~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 101 ESEEREELLEELEELKKELKELKKELE----KYSE-NDPEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence 447788777777666666665555555 2222 3555444444444555555555
No 264
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=22.98 E-value=1e+02 Score=26.70 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 022587 219 LFLFLIVCGVIAIIVVKVLTHIKSQ 243 (295)
Q Consensus 219 ~~iilili~iI~iii~~~~~~~~~~ 243 (295)
|+++.+..++|++++++.++..+-+
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~~~ 123 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRRRN 123 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4445556667777777777666533
No 265
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.88 E-value=5.9e+02 Score=24.19 Aligned_cols=30 Identities=13% Similarity=0.369 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 40 RQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 40 ~r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
+|.-.|+.+.++|+|..+-|..=|.||-++
T Consensus 65 QKEV~iRHLkakLkes~~~l~dRetEI~eL 94 (305)
T PF15290_consen 65 QKEVCIRHLKAKLKESENRLHDRETEIDEL 94 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444556667777777666666666666654
No 266
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.88 E-value=3.4e+02 Score=20.54 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 022587 8 SPQLEQIHGEIRDNFRAL 25 (295)
Q Consensus 8 s~~~e~ye~e~~~l~~~l 25 (295)
.++|+..-.||..+..++
T Consensus 3 ~elLd~ir~Ef~~~~~e~ 20 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEA 20 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777777776544
No 267
>PHA03048 IMV membrane protein; Provisional
Probab=22.84 E-value=1.2e+02 Score=23.74 Aligned_cols=11 Identities=36% Similarity=0.612 Sum_probs=6.2
Q ss_pred HHhhccCccccCCC
Q 022587 254 FCLLSMNFQVVNPN 267 (295)
Q Consensus 254 ~~~~~~~~~~~~~~ 267 (295)
||+ ++.+|-|+
T Consensus 70 ~C~---~~~~~~~~ 80 (93)
T PHA03048 70 YCT---PSKVVIDN 80 (93)
T ss_pred ccC---CCcccCcc
Confidence 777 45555444
No 268
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=22.82 E-value=8.1e+02 Score=25.22 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 12 EQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 12 e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
..|+..+..++.+++..-.|.... ....+.+..+++.++.-.+.++.|++..
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f------~~Ec~aL~~rL~~aE~ek~~l~eeL~~a 467 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHF------YAECRALQKRLESAEKEKESLEEELKEA 467 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655554443333221 1234455555666665555555555543
No 269
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=22.66 E-value=21 Score=28.07 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 022587 222 FLIVCGVIAIIVVKVLTHIK 241 (295)
Q Consensus 222 ilili~iI~iii~~~~~~~~ 241 (295)
++++.+++++++|.++.+.|
T Consensus 76 ~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 76 VAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred hhHHHHHHHHHhheeEEeec
Confidence 33344555555565554443
No 270
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.65 E-value=3.1e+02 Score=19.93 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=26.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHHHH
Q 022587 181 DQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDK-CIMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 181 EqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK-~il~~iilili~iI~iii~~~ 236 (295)
..+....++++..+........-+..+..++..=+ -.-|+.-+++-++|.++++.+
T Consensus 13 ~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 13 TKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444445555555554333 223555555555555555554
No 271
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=22.61 E-value=1.3e+02 Score=24.64 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-cccchhhhH
Q 022587 216 CIMLFLFLIVCGVIAIIVVKVLTHIKS-QHNFQQWQF 251 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~~~~~~~~-~~~~~~~~~ 251 (295)
++.|.++++.+++.+.++...+.|.+. .|....|.-
T Consensus 61 ~~~~~~~v~~~~~~~avv~~~~~~~~~~~~~~~~~~r 97 (237)
T PF02932_consen 61 YFICTMFVFSASLEFAVVVYNIHHRGPRTRPMPPWVR 97 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTT-S------
T ss_pred hccccchhhhHHHHhhhhhhhhcccccccccccchhH
Confidence 333444443344444444444433333 554554443
No 272
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=22.55 E-value=4.4e+02 Score=21.67 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHH
Q 022587 44 QLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSY 95 (295)
Q Consensus 44 ~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~ 95 (295)
....++..+..++.-++..+.+++.............|..++..+++.+..+
T Consensus 9 ~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~ 60 (171)
T PF03357_consen 9 TIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKL 60 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445554555554443333333334444455555555553
No 273
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=22.49 E-value=2.7e+02 Score=19.36 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHH
Q 022587 46 EELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSM 88 (295)
Q Consensus 46 ~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~ 88 (295)
.+++..|...+ .+|+.|+.++ |..|..|++-.
T Consensus 11 ~eL~~rl~~LD---~~ME~Eieel--------r~RY~~KRqPI 42 (49)
T PF11629_consen 11 EELQQRLASLD---PEMEQEIEEL--------RQRYQAKRQPI 42 (49)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHhCC---HHHHHHHHHH--------HHHHHHhhccH
Confidence 34445444333 4777777764 55666665543
No 274
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.48 E-value=9.7e+02 Score=25.64 Aligned_cols=154 Identities=19% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhchhccCCChhhhHHHHHHHHH
Q 022587 12 EQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMREC----KRLIKEMDREIKDEEARNPPEVNKQLNDEKQS 87 (295)
Q Consensus 12 e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea----~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~ 87 (295)
+.|=........+|+..+..|.. ..+++...|.+++...+.. +.|-+.|+ ++.+. ...+..|++.
T Consensus 550 eeYi~~~~~ar~ei~~rv~~Lk~--~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e-~a~d~--------Qe~L~~R~~~ 618 (717)
T PF10168_consen 550 EEYIEKQDLAREEIQRRVKLLKQ--QKEQQLKELQELQEERKSLRESAEKLAERYE-EAKDK--------QEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--------HHHHHHHHHH
Q ss_pred HHHHHHH----HHHHHHHHhhhhhcchhhhccCCCCCCCCCcchhhhhhccccHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 022587 88 MIKELNS----YVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQMVVE 163 (295)
Q Consensus 88 ~~~eL~~----~~~l~k~~~~~~~~~R~~Lf~~~~~~~~~~~~~n~~~~~~~~~rq~l~~~~~~l~~t~~~L~~s~r~l~ 163 (295)
....++. ...-.+++.+.+..-++.| ..-+..+.....+++.+...++ .+.-..
T Consensus 619 vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l---------------------~~l~~si~~lk~k~~~Q~~~i~-~~~~~~ 676 (717)
T PF10168_consen 619 VLQLLNSQLPVLSEAEREFKKELERMKDQL---------------------QDLKASIEQLKKKLDYQQRQIE-SQKSPK 676 (717)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHh-cccccc
Q ss_pred HH-----HHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHH
Q 022587 164 QT-----IEVGTQTATTLKGQTDQMGRIVNELDTIQFSIK 198 (295)
Q Consensus 164 eT-----eeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~ 198 (295)
.. +.-=..|-+.|.+|.+.|.+...++..+...++
T Consensus 677 ~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~~ 716 (717)
T PF10168_consen 677 KKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIVN 716 (717)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 275
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=83 Score=26.96 Aligned_cols=24 Identities=4% Similarity=0.157 Sum_probs=12.2
Q ss_pred hchHHHHHHHHHHHH-HHHHHHHHH
Q 022587 213 TDKCIMLFLFLIVCG-VIAIIVVKV 236 (295)
Q Consensus 213 tdK~il~~iilili~-iI~iii~~~ 236 (295)
++|++++++++.+++ ++.+++|..
T Consensus 6 r~Rl~~il~~~a~l~~a~~l~Lyal 30 (153)
T COG2332 6 RKRLWIILAGLAGLALAVGLVLYAL 30 (153)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555555555554 444444444
No 276
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=22.33 E-value=3.4e+02 Score=20.29 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=19.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 022587 182 QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAII 232 (295)
Q Consensus 182 qL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~ii 232 (295)
.|+.+.++++-+.+.+ +.+.=++++|-.--=--+.++++++.+.+++.+
T Consensus 23 RLdeieekvef~~~Ev--~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l~~ 71 (75)
T COG4064 23 RLDEIEEKVEFVNGEV--YQRIGKKIGRDIGILYGLVIGLILCMIYILLGV 71 (75)
T ss_pred HHHHHHHHHHhhHHHH--HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433 233334444443222233344444444443333
No 277
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.22 E-value=2.6e+02 Score=19.83 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 022587 58 LIKEMDR 64 (295)
Q Consensus 58 lL~qmel 64 (295)
++.-|+.
T Consensus 40 ll~lYE~ 46 (55)
T PF05377_consen 40 LLSLYEV 46 (55)
T ss_pred HHHHHHH
Confidence 3333333
No 278
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.21 E-value=99 Score=29.41 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022587 216 CIMLFLFLIVCGVIAIIVVK 235 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~ 235 (295)
+|.++||+++++||.+|+.+
T Consensus 262 iiaIliIVLIMvIIYLILRY 281 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRY 281 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543
No 279
>PTZ00478 Sec superfamily; Provisional
Probab=22.20 E-value=3.7e+02 Score=20.64 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHhhhchHHHHHHHHHHHHHHHHHHHH
Q 022587 186 IVNELDTIQFSIKKASQLVKEIG---RQVATDKCIMLFLFLIVCGVIAIIVVK 235 (295)
Q Consensus 186 ~~~~l~~~d~~l~rs~r~L~~m~---Rr~~tdK~il~~iilili~iI~iii~~ 235 (295)
...-++...+=++.+.++++.-. |+.++.-+..+++.+++++.|+++|-.
T Consensus 16 ~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~IKL 68 (81)
T PTZ00478 16 VGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSIKL 68 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 34445555566666776665543 445555555566667777888777653
No 280
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=22.19 E-value=3.1e+02 Score=19.75 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 022587 190 LDTIQFSIKKASQLVKEIG---RQVATDKCIMLFLFLIVCGVIAIIVVKVL 237 (295)
Q Consensus 190 l~~~d~~l~rs~r~L~~m~---Rr~~tdK~il~~iilili~iI~iii~~~~ 237 (295)
++.+..-++.+.++++.=. |..+..=+..+++.++++++|+++|+-+.
T Consensus 7 ~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ikli~ 57 (61)
T PRK09400 7 QENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIYLIM 57 (61)
T ss_pred HHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554432 23344334445566677788888887653
No 281
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.19 E-value=5.8e+02 Score=22.92 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=40.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHH
Q 022587 139 ELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSI 197 (295)
Q Consensus 139 q~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l 197 (295)
..+..-.+.+.++..+.+.+.+.+..-+.-=..+=.+|...++....+...|+.+-+.|
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444556677777777777777777666666666777777777777777777765544
No 282
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.18 E-value=8.1e+02 Score=24.62 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 159 QMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 159 ~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
.+++-++-..|.+++.....|.=.-+++++-|+++...+++...+=..|+-
T Consensus 312 nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~ 362 (439)
T KOG2911|consen 312 NKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALAS 362 (439)
T ss_pred cHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 477888888999999988888777788888888888888888766555543
No 283
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=22.16 E-value=1.9e+02 Score=25.87 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=5.0
Q ss_pred hhhHHHHHhh
Q 022587 248 QWQFSIFCLL 257 (295)
Q Consensus 248 ~~~~~~~~~~ 257 (295)
+-.|-+-|-.
T Consensus 53 ~~~FC~sCH~ 62 (200)
T PRK10617 53 TEEFCISCHE 62 (200)
T ss_pred cchhHHHhhc
Confidence 3445555554
No 284
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.98 E-value=56 Score=28.08 Aligned_cols=23 Identities=4% Similarity=-0.103 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 022587 217 IMLFLFLIVCGVIAIIVVKVLTH 239 (295)
Q Consensus 217 il~~iilili~iI~iii~~~~~~ 239 (295)
|+++++++++++++.+.|+++++
T Consensus 22 iii~~~~lll~~~g~~~~f~l~~ 44 (170)
T PRK05696 22 IIIVIGVLLALGGGGAAWFFMGS 44 (170)
T ss_pred eeHHHHHHHHHHHHHHHHhhhcC
Confidence 33333333334444556666544
No 285
>PRK11901 hypothetical protein; Reviewed
Probab=21.94 E-value=86 Score=30.17 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchh
Q 022587 216 CIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQQ 248 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~~~~~~~~~~~~~~ 248 (295)
-+|++|.++|+++++|.|-.-||.-.+.|.-++
T Consensus 37 h~MiGiGilVLlLLIi~IgSALksP~~~~~~q~ 69 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIGSALKSPTEHESQQS 69 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Confidence 367777777777777777888887777776654
No 286
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.84 E-value=6.9e+02 Score=23.65 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCC--ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 38 SNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARN--PPEVNKQLNDEKQSMIKELNSYVALRKT 101 (295)
Q Consensus 38 ~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~--~~~~r~~~~~r~~~~~~eL~~~~~l~k~ 101 (295)
+++|.+.+..+...|.+-...+ +-+...+.... -......+..+...+..++..+++....
T Consensus 140 YeWR~~ll~gl~~~L~~~~~~L---~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 140 YEWRMQLLEGLKEGLEENLELL---QEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4788777776666655443332 22222221100 0123445555666666666654444333
No 287
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.73 E-value=3.2e+02 Score=19.71 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHH
Q 022587 44 QLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNS 94 (295)
Q Consensus 44 ~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~ 94 (295)
.+......++++...|.+.+..+...+.+..+..-.....+.+.+..++..
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~ 52 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIES 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHH
Confidence 356778889999999999998886655434444433444455555555544
No 288
>PRK15111 antimicrobial peptide ABC transporter permease SapC; Provisional
Probab=21.70 E-value=1.5e+02 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.187 Sum_probs=12.6
Q ss_pred HHHHHHHhhhchHHHHHHHHH
Q 022587 204 VKEIGRQVATDKCIMLFLFLI 224 (295)
Q Consensus 204 L~~m~Rr~~tdK~il~~iili 224 (295)
.+.+.|+..+||..+++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~il 36 (296)
T PRK15111 16 LRTAWRKFYSDALAMVGLYGC 36 (296)
T ss_pred HHHHHHHHhhChHHHHHHHHH
Confidence 344567777888666554433
No 289
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.62 E-value=5e+02 Score=22.72 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchh
Q 022587 46 EELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 46 ~~le~~l~ea~~lL~qmelE~r~l 69 (295)
..++....+.+.-|++++.|+..+
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~l 139 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRL 139 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 290
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=21.54 E-value=72 Score=22.59 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 022587 219 LFLFLIVCGV 228 (295)
Q Consensus 219 ~~iilili~i 228 (295)
++||++++++
T Consensus 6 wlIIviVlgv 15 (55)
T PF11446_consen 6 WLIIVIVLGV 15 (55)
T ss_pred hHHHHHHHHH
Confidence 3444434333
No 291
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.52 E-value=1.3e+02 Score=17.52 Aligned_cols=18 Identities=28% Similarity=0.748 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022587 40 RQTKQLEELTGRMRECKR 57 (295)
Q Consensus 40 ~r~~~l~~le~~l~ea~~ 57 (295)
+.+..|.+++.+|.+|.+
T Consensus 5 rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 5 RLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445567777777777653
No 292
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=21.52 E-value=43 Score=21.77 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 022587 215 KCIMLFLFLIVCGVIAII 232 (295)
Q Consensus 215 K~il~~iilili~iI~ii 232 (295)
|+|-|++.. +++||+.|
T Consensus 22 kligclvvm-figiivmi 38 (41)
T PF13121_consen 22 KLIGCLVVM-FIGIIVMI 38 (41)
T ss_pred HHHHHHHHH-HHHHHheE
Confidence 344444322 34444443
No 293
>PHA03030 hypothetical protein; Provisional
Probab=21.51 E-value=53 Score=26.37 Aligned_cols=24 Identities=17% Similarity=0.570 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 216 CIMLFLFLIVCGVIAIIVVKVLTH 239 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~~~~~ 239 (295)
|+++++++++++++++.+..++++
T Consensus 3 ci~~ili~lfifl~iffYI~~IkR 26 (122)
T PHA03030 3 CIFLILIFLFIFLFIFFYIRIIKR 26 (122)
T ss_pred eehHHHHHHHHHHHHHHHheeeec
Confidence 344444555555555555555444
No 294
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=21.51 E-value=2.4e+02 Score=24.16 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=14.2
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 204 VKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVLTH 239 (295)
Q Consensus 204 L~~m~Rr~~tdK~il~~iilili~iI~iii~~~~~~ 239 (295)
-..|.||+ .+++++=+ ++++.++++++.++.
T Consensus 58 s~RM~rRm----~~~~GiP~-~lG~~~f~~~y~l~~ 88 (153)
T PF11947_consen 58 SNRMLRRM----AVFVGIPT-ALGVAVFVVFYYLKS 88 (153)
T ss_pred HHHHHHHH----HHHhchHH-HHHHHHHHHHHHHHh
Confidence 44555555 34444433 444444444444333
No 295
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=21.45 E-value=1.2e+02 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022587 215 KCIMLFLFLIVCGVIAIIVVKVLTHIKS 242 (295)
Q Consensus 215 K~il~~iilili~iI~iii~~~~~~~~~ 242 (295)
++.+.+.++|++++|.+++|-.+.+...
T Consensus 5 Wvt~~Is~~ill~viglv~y~~l~~~~~ 32 (122)
T TIGR02588 5 WVTFGISTLILAAMFGLVAYDWLRYSNK 32 (122)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 3344555777888999999988665543
No 296
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=21.39 E-value=4.1e+02 Score=20.89 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 022587 51 RMRECKRLIKEMD 63 (295)
Q Consensus 51 ~l~ea~~lL~qme 63 (295)
.+++|+..++.++
T Consensus 80 ~l~~AK~~l~~l~ 92 (103)
T PF07361_consen 80 KLDEAKAALKKLD 92 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3445554444444
No 297
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.37 E-value=7.2e+02 Score=23.72 Aligned_cols=85 Identities=11% Similarity=0.150 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 022587 146 KTMDETDQAIKRSQMVVEQTIEVGTQTATT---LKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLF 222 (295)
Q Consensus 146 ~~l~~t~~~L~~s~r~l~eTeeiG~~il~~---L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~ii 222 (295)
++-++-.+-.+...-...=..++|.-+.+. +++===-++.+.-++.+....|-+|.+. .|+...=+||+++++
T Consensus 215 erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~y----Qk~~~k~~~i~~L~l 290 (305)
T KOG0809|consen 215 EREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERY----QKRNKKMKVILMLTL 290 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHH----HhcCCceEehHHHHH
Confidence 333333333333333333344444444432 3333334556777888888888888754 566667788888877
Q ss_pred HHHHHHHHHHHH
Q 022587 223 LIVCGVIAIIVV 234 (295)
Q Consensus 223 lili~iI~iii~ 234 (295)
+|+++++++|+.
T Consensus 291 ~ii~llvllilk 302 (305)
T KOG0809|consen 291 LIIALLVLLILK 302 (305)
T ss_pred HHHHHHHHHHhh
Confidence 766655555543
No 298
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.19 E-value=1.2e+02 Score=20.50 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 022587 227 GVIAIIVVKV 236 (295)
Q Consensus 227 ~iI~iii~~~ 236 (295)
+.+++++|..
T Consensus 21 ~F~gi~~w~~ 30 (49)
T PF05545_consen 21 FFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 299
>COG4473 EcsB Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion]
Probab=21.13 E-value=2.8e+02 Score=27.28 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=39.3
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHhhccCccc
Q 022587 205 KEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQQWQFSIFCLLSMNFQV 263 (295)
Q Consensus 205 ~~m~Rr~~tdK~il~~iilili~iI~iii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (295)
.+..|=+..|-++++++++ ++..++-.-..++|+..+|.=.-+..++-|++.+-.-+
T Consensus 19 ~~YLryv~Ndhfvl~L~il--Lg~~i~qY~~llk~~p~~~~p~~~l~~iv~~lll~~g~ 75 (379)
T COG4473 19 NKYLRYVFNDHFVLFLLIL--LGFGIYQYSQLLKHIPLNHFPIFPLLAIVIVLLLSIGS 75 (379)
T ss_pred HHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhh
Confidence 3444556788887777653 33333333446899999999889999999988765433
No 300
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.06 E-value=7.2e+02 Score=23.59 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 42 TKQLEELTGRMRECKRLIKEMDRE 65 (295)
Q Consensus 42 ~~~l~~le~~l~ea~~lL~qmelE 65 (295)
...+.+++.++++++.-|.+|..+
T Consensus 176 ~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 176 ENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666643
No 301
>PF15102 TMEM154: TMEM154 protein family
Probab=20.34 E-value=30 Score=29.43 Aligned_cols=6 Identities=17% Similarity=0.755 Sum_probs=2.2
Q ss_pred HHHHHH
Q 022587 216 CIMLFL 221 (295)
Q Consensus 216 ~il~~i 221 (295)
++|++|
T Consensus 58 iLmIlI 63 (146)
T PF15102_consen 58 ILMILI 63 (146)
T ss_pred EEEEeH
Confidence 333333
No 302
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=20.30 E-value=1e+02 Score=28.29 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 022587 214 DKCIMLFLFLIVCGVIAIIVVKVLTHIKSQHN 245 (295)
Q Consensus 214 dK~il~~iilili~iI~iii~~~~~~~~~~~~ 245 (295)
-|++||.++++-++...+++.+.+...+....
T Consensus 23 ~k~Vm~~Ll~~Si~swaiIieR~~~l~~~~~~ 54 (244)
T PRK10414 23 VKCVMIGLILASVVTWAIFFSKSVEFFNQKRR 54 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889888887788888888887766655543
No 303
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=20.09 E-value=4.7e+02 Score=25.19 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 022587 141 IDAGKKTMDET--DQAIKRSQMVVEQTIEVGTQTATTLKGQT-------DQMGRIVNELDTIQFSIKKASQLVKEIGRQ- 210 (295)
Q Consensus 141 l~~~~~~l~~t--~~~L~~s~r~l~eTeeiG~~il~~L~~Qr-------EqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr- 210 (295)
+..+-+.+.+. +..+.+....+.+..+-|....+.|.... -.+-++-++-...+..+.+....+....+.
T Consensus 80 l~~aL~~l~~~~~~~~~~~~~~~i~~~l~~G~sls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~~~~~~ 159 (399)
T TIGR02120 80 LEEALAALLEQAEKPRLKSVLAAIRSRVLEGKSLADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEERQALR 159 (399)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHCCccHHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q ss_pred -hhhchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHhhccCccccCCCCCCCCCCCCCCCCcccccccc
Q 022587 211 -VATDKCIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQQWQFSIFCLLSMNFQVVNPNNKDIRDIPGLAPPAPARRLLS 288 (295)
Q Consensus 211 -~~tdK~il~~iilili~iI~iii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (295)
-...-++-=++++++.+++++++... |=|.=..+..--|...|..|+-+++
T Consensus 160 ~~i~~al~YP~~ll~~~~~v~~~~~~~---------------------------v~P~f~~~f~~~~~~lP~~t~~l~~ 211 (399)
T TIGR02120 160 SKITTALIYPAVLTVVAIGVVIFLLAY---------------------------VVPKVVEQFAHMKQTLPLLTRALIA 211 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH---------------------------hcccHHHHHhhCCCCCCHHHHHHHH
No 304
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.00 E-value=4.2e+02 Score=20.46 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 8 SPQLEQIHGEIRDNFRALSNGFQKLDKIK-DSNRQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 8 s~~~e~ye~e~~~l~~~l~~~~~kl~~~~-~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
..+++..|+.+.....+|...-.+|..-. .++.|.. ++..+.+.+..++.+|-|+..+
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~----lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRS----LEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHH----HHHHHHHHHHHhhccHHHHHHH
Confidence 35677777777777777766666665422 3233322 3344555555555555444443
Done!