Query 022587
Match_columns 295
No_of_seqs 184 out of 582
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 07:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qyw_A Vesicle transport throu 99.8 7.4E-19 2.5E-23 139.2 11.6 95 1-102 7-101 (102)
2 2nps_C Vesicle transport throu 99.8 1E-18 3.5E-23 132.8 9.5 80 136-215 2-81 (81)
3 1vcs_A Vesicle transport throu 99.7 3.8E-17 1.3E-21 129.4 8.2 91 6-104 2-92 (102)
4 3onj_A T-snare VTI1; helix, HA 99.7 4.8E-16 1.6E-20 121.9 12.2 92 9-103 1-93 (97)
5 1gl2_C VTI1B, vesicle transpor 99.6 5.8E-15 2E-19 107.5 7.8 64 146-209 2-65 (65)
6 1n7s_C SNAP-25A; neuronal snar 99.4 7.5E-13 2.6E-17 99.9 9.9 74 136-209 6-79 (79)
7 1nhl_A Synaptosomal-associated 99.1 3.3E-10 1.1E-14 79.3 6.6 53 155-207 2-54 (54)
8 1l4a_C S-SNAP25 fusion protein 98.8 5.8E-09 2E-13 79.1 6.4 74 135-208 9-82 (83)
9 3b5n_C Protein transport prote 98.7 1.1E-07 3.7E-12 69.9 10.1 64 146-209 5-68 (70)
10 3hd7_B Syntaxin-1A; membrane p 98.2 2.8E-05 9.4E-10 61.7 13.5 83 148-230 16-101 (109)
11 2nps_D Syntaxin-6; vesicle fus 97.8 5.2E-05 1.8E-09 57.0 7.7 73 141-213 7-79 (82)
12 1gl2_D Syntaxin 8, vesicle tra 97.7 9.5E-05 3.3E-09 53.0 7.1 64 146-209 2-65 (65)
13 1sfc_D Protein (SNAP-25B), pro 97.5 0.00037 1.3E-08 53.0 8.4 64 146-209 22-85 (87)
14 1n7s_D SNAP-25A; neuronal snar 97.5 0.00081 2.8E-08 48.2 8.9 61 147-207 4-64 (66)
15 3b5n_D Protein transport prote 97.5 0.00071 2.4E-08 48.5 8.4 60 147-206 4-63 (64)
16 1l4a_D S-SNAP25 fusion protein 97.2 0.00078 2.7E-08 51.2 6.8 63 147-209 24-86 (87)
17 3hd7_A Vesicle-associated memb 97.2 0.0082 2.8E-07 45.8 12.0 60 152-211 4-63 (91)
18 2kog_A Vesicle-associated memb 95.5 0.0041 1.4E-07 49.9 1.5 70 152-221 32-101 (119)
19 1dn1_B Syntaxin 1A, syntaxin b 94.7 0.57 1.9E-05 42.1 13.3 59 147-205 194-252 (267)
20 3vkg_A Dynein heavy chain, cyt 94.4 5.8 0.0002 47.1 23.7 74 137-210 2012-2085(3245)
21 3hd7_A Vesicle-associated memb 94.0 0.83 2.8E-05 34.5 11.0 68 147-220 6-76 (91)
22 1jth_B Syntaxin 1A; coiled-coi 94.0 0.58 2E-05 34.1 9.8 64 149-212 6-69 (77)
23 2nps_B Syntaxin 13, vesicle-as 92.3 1.6 5.4E-05 31.2 9.8 60 153-212 6-65 (71)
24 1n7s_B Syntaxin 1A; neuronal s 92.2 1.5 5.3E-05 31.0 9.5 59 148-206 7-65 (68)
25 3b5n_B Protein SSO1; snare com 92.1 1.6 5.5E-05 31.0 9.6 62 148-209 5-66 (69)
26 1gl2_B Syntaxin 7; membrane pr 91.9 1.3 4.6E-05 31.1 8.8 55 152-206 8-62 (65)
27 2xhe_B Syntaxin1; exocytosis, 91.0 4.3 0.00015 36.3 13.5 61 148-208 212-272 (279)
28 3nmd_A CGMP dependent protein 90.7 1 3.5E-05 32.7 7.1 52 1-66 12-63 (72)
29 1sfc_B Protein (syntaxin 1A), 89.4 2.5 8.4E-05 31.2 8.7 62 148-209 16-77 (83)
30 3c98_B Syntaxin-1A; protein co 82.2 12 0.00042 32.1 10.9 62 144-205 203-264 (279)
31 3hd7_B Syntaxin-1A; membrane p 76.8 23 0.00079 27.2 12.6 55 176-231 51-105 (109)
32 3etw_A Adhesin A; antiparallel 76.6 26 0.00089 27.7 11.0 86 8-101 8-93 (119)
33 1fjk_A Cardiac phospholamban; 69.2 6.8 0.00023 25.7 4.0 40 193-232 8-48 (52)
34 2kog_A Vesicle-associated memb 68.8 5.3 0.00018 31.6 4.3 81 146-232 33-116 (119)
35 2ic6_A Nucleocapsid protein; h 62.2 29 0.00098 25.4 6.7 22 39-60 48-69 (78)
36 2k48_A Nucleoprotein; viral pr 58.6 22 0.00074 27.5 5.7 51 9-59 35-98 (107)
37 4aj5_A SKA1, spindle and kinet 58.5 55 0.0019 24.5 9.1 30 39-68 33-62 (91)
38 2ic9_A Nucleocapsid protein; h 58.0 40 0.0014 25.6 7.1 23 10-32 6-28 (96)
39 1sfc_A VAMP 2, protein (synapt 57.8 57 0.002 24.4 9.4 60 151-210 28-87 (96)
40 3b5n_A Synaptobrevin homolog 1 56.3 44 0.0015 22.7 9.4 57 153-209 2-58 (61)
41 3vkg_A Dynein heavy chain, cyt 56.0 3.4E+02 0.011 32.7 21.1 190 5-211 1902-2100(3245)
42 2knc_B Integrin beta-3; transm 55.7 11 0.00038 27.5 3.6 19 222-240 20-38 (79)
43 3f6n_A Virion-associated prote 51.6 22 0.00075 28.2 4.9 55 1-56 1-61 (129)
44 1n7s_A Vesicle-associated memb 50.5 57 0.0019 22.2 9.6 58 152-209 3-60 (63)
45 3ghg_A Fibrinogen alpha chain; 49.0 66 0.0023 31.6 8.8 27 8-34 52-78 (562)
46 3vou_A ION transport 2 domain 46.8 91 0.0031 24.6 8.2 57 197-257 8-64 (148)
47 3na7_A HP0958; flagellar bioge 46.1 1.5E+02 0.0051 25.7 16.6 25 44-68 33-57 (256)
48 2q67_A Potassium channel prote 46.1 64 0.0022 24.5 6.9 57 198-258 6-62 (114)
49 1pi7_A VPU protein, U ORF prot 45.2 23 0.0008 22.0 3.3 18 219-236 7-24 (36)
50 3qb5_K Translin-associated pro 43.7 1.2E+02 0.0042 27.2 9.4 84 6-92 34-131 (290)
51 1gd2_E Transcription factor PA 43.4 49 0.0017 23.5 5.3 29 39-67 25-53 (70)
52 3tul_A Cell invasion protein S 40.5 1.5E+02 0.005 24.2 8.3 52 42-102 75-127 (158)
53 2nps_A VAMP-4, vesicle-associa 39.8 97 0.0033 21.8 7.3 57 155-211 10-66 (74)
54 1urq_A M-tomosyn isoform; tran 39.8 91 0.0031 21.5 8.0 55 154-208 5-59 (63)
55 2c5k_T Syntaxin TLG1, T-snare 39.6 1.2E+02 0.004 22.7 7.3 22 43-64 36-57 (95)
56 2k9j_B Integrin beta-3; transm 39.4 35 0.0012 21.9 3.6 19 223-241 20-38 (43)
57 2lk9_A Bone marrow stromal ant 39.1 30 0.001 21.2 3.0 7 217-223 6-12 (35)
58 1s94_A S-syntaxin; three helix 37.3 1.7E+02 0.0057 23.8 9.7 27 43-69 85-111 (180)
59 4afl_A P29ING4, inhibitor of g 36.5 1.3E+02 0.0045 22.3 7.9 47 10-56 26-75 (104)
60 1d7m_A Cortexillin I; coiled-c 35.8 1.4E+02 0.0047 22.4 8.8 39 20-60 25-63 (101)
61 2dfs_A Myosin-5A; myosin-V, in 34.8 4.4E+02 0.015 28.0 16.2 30 148-177 993-1022(1080)
62 3iox_A AGI/II, PA; alpha helix 34.2 3.2E+02 0.011 26.5 11.0 15 7-21 7-21 (497)
63 1m1j_B Fibrinogen beta chain; 34.1 2.5E+02 0.0086 27.0 10.3 27 8-34 88-114 (464)
64 3ol1_A Vimentin; structural ge 33.9 1.6E+02 0.0055 22.7 10.5 19 7-25 11-29 (119)
65 3p8c_F ABL interactor 2; actin 33.9 1.9E+02 0.0066 23.7 8.2 39 158-196 59-97 (159)
66 3eff_K Voltage-gated potassium 33.6 43 0.0015 26.2 4.2 36 216-251 8-43 (139)
67 2l8s_A Integrin alpha-1; trans 33.4 51 0.0017 22.4 3.8 13 223-235 20-32 (54)
68 1t3j_A Mitofusin 1; coiled coi 32.1 1.6E+02 0.0056 22.2 7.4 16 80-95 75-90 (96)
69 3a7p_A Autophagy protein 16; c 31.8 2.1E+02 0.0072 23.4 8.7 56 12-69 38-94 (152)
70 1gl2_A Endobrevin; membrane pr 31.2 1.3E+02 0.0043 20.6 6.9 45 152-196 8-52 (65)
71 3iox_A AGI/II, PA; alpha helix 30.7 3.8E+02 0.013 26.0 11.1 14 18-31 7-20 (497)
72 3trt_A Vimentin; cytoskeleton, 30.3 1.4E+02 0.0048 20.8 7.3 25 44-68 50-74 (77)
73 1xaw_A Occludin; coiled-coil, 30.3 1.1E+02 0.0038 24.7 6.1 30 74-104 108-137 (140)
74 1k1f_A Breakpoint cluster regi 29.4 59 0.002 23.0 3.7 26 43-68 26-51 (72)
75 1l4a_A Synaptobrevin; snare, s 29.1 60 0.0021 23.3 3.9 44 154-197 16-59 (80)
76 2avr_X Adhesion A; antiparalle 28.1 2.2E+02 0.0074 22.3 11.9 73 9-96 9-88 (119)
77 1afo_A Glycophorin A; integral 27.8 87 0.003 19.8 3.9 15 222-236 20-34 (40)
78 4ev6_A Magnesium transport pro 27.2 3.4E+02 0.012 24.2 15.9 47 48-94 162-208 (339)
79 3ajm_A Programmed cell death p 27.0 3E+02 0.01 23.6 10.0 77 20-102 98-174 (213)
80 3tnu_A Keratin, type I cytoske 26.8 2.2E+02 0.0077 22.1 8.5 22 42-63 44-65 (131)
81 1orq_C Potassium channel; volt 26.3 1E+02 0.0035 25.6 5.6 28 222-249 139-166 (223)
82 2ks1_B Epidermal growth factor 26.2 76 0.0026 20.5 3.6 17 224-240 22-38 (44)
83 1n7s_D SNAP-25A; neuronal snar 26.0 1.6E+02 0.0054 20.0 5.7 21 14-34 4-24 (66)
84 1q90_R Cytochrome B6-F complex 25.6 1.2E+02 0.0042 20.0 4.6 31 206-236 8-38 (49)
85 1gl2_C VTI1B, vesicle transpor 25.6 1.6E+02 0.0056 20.1 7.4 51 145-195 8-58 (65)
86 2l5g_B Putative uncharacterize 25.4 93 0.0032 19.9 3.8 14 42-55 22-35 (42)
87 2jee_A YIIU; FTSZ, septum, coi 24.8 2E+02 0.007 20.9 10.5 19 7-25 3-22 (81)
88 3tnu_B Keratin, type II cytosk 24.5 2.5E+02 0.0084 21.7 8.1 16 52-67 38-53 (129)
89 2oez_A UPF0289 protein VP2528; 23.7 1.2E+02 0.0042 26.7 5.6 54 167-220 59-122 (247)
90 1u2m_A Histone-like protein HL 23.6 42 0.0015 26.4 2.4 57 7-63 28-84 (143)
91 3i00_A HIP-I, huntingtin-inter 23.6 2.6E+02 0.0089 21.7 7.7 53 39-99 11-63 (120)
92 3j1r_A Archaeal adhesion filam 23.3 1.1E+02 0.0039 17.4 3.4 14 221-234 8-21 (26)
93 3gwk_C SAG1039, putative uncha 23.2 2E+02 0.007 20.3 8.3 33 37-69 9-41 (98)
94 1m7k_A Silencer of death domai 23.1 1.4E+02 0.0048 22.6 5.1 7 65-71 65-71 (99)
95 3tnu_B Keratin, type II cytosk 22.6 1.6E+02 0.0056 22.8 5.8 30 40-69 40-69 (129)
96 3vmt_A Monofunctional glycosyl 22.5 11 0.00038 33.8 -1.4 25 263-287 90-114 (263)
97 1c1g_A Tropomyosin; contractIl 22.3 3.1E+02 0.011 22.2 21.9 12 10-21 14-25 (284)
98 3axj_B TRAX, translin associat 22.2 4.2E+02 0.014 23.6 10.6 82 6-90 29-126 (298)
99 2odv_A Plectin 1, HD1; plakin 22.2 3.1E+02 0.011 23.6 8.0 57 44-104 166-222 (235)
100 4a3a_A Amphiphysin; structural 21.8 3.8E+02 0.013 23.0 8.8 15 48-62 170-184 (243)
101 2knc_A Integrin alpha-IIB; tra 21.5 94 0.0032 21.0 3.4 14 223-236 23-36 (54)
102 1t3j_A Mitofusin 1; coiled coi 21.3 2.7E+02 0.0091 21.0 7.4 15 54-68 51-65 (96)
103 1ezj_A Nucleocapsid phosphopro 20.7 2.8E+02 0.0097 21.0 7.7 40 46-94 62-101 (115)
104 4fi5_A Nucleoprotein; structur 20.4 3E+02 0.01 21.3 7.4 21 11-31 24-44 (113)
105 2nps_C Vesicle transport throu 20.3 2.4E+02 0.0083 20.1 9.0 62 137-198 10-71 (81)
106 2l2t_A Receptor tyrosine-prote 20.3 1.2E+02 0.004 19.6 3.6 16 225-240 22-37 (44)
107 2nps_B Syntaxin 13, vesicle-as 20.2 1.5E+02 0.0051 20.5 4.5 31 38-68 1-31 (71)
108 2k1e_A Water soluble analogue 20.1 96 0.0033 22.9 3.7 29 219-247 11-39 (103)
No 1
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=99.79 E-value=7.4e-19 Score=139.21 Aligned_cols=95 Identities=18% Similarity=0.304 Sum_probs=86.5
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHH
Q 022587 1 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQ 80 (295)
Q Consensus 1 ~~~~~~ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~ 80 (295)
||+-..||++|++||++|+.++++|+.++.+++....+++|++.|++++..++||++||++|++|++++ |++.|..
T Consensus 7 ~~~~~~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~----p~s~R~~ 82 (102)
T 2qyw_A 7 MAASAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA----PLTFRNP 82 (102)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHH
Confidence 677778999999999999999999999999997654779999999999999999999999999999998 6689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022587 81 LNDEKQSMIKELNSYVALRKTY 102 (295)
Q Consensus 81 ~~~r~~~~~~eL~~~~~l~k~~ 102 (295)
|+.|+++|+++|+. +++++
T Consensus 83 ~~~klr~Yk~dL~~---lk~el 101 (102)
T 2qyw_A 83 MMSKLRNYRKDLAK---LHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHH---HHhhc
Confidence 99999999999988 55444
No 2
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.77 E-value=1e-18 Score=132.80 Aligned_cols=80 Identities=11% Similarity=0.268 Sum_probs=76.4
Q ss_pred cHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 022587 136 SNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDK 215 (295)
Q Consensus 136 ~~rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK 215 (295)
++|++++.+++++++++++|.++++++.|||+||.+|+++|..|||+|.++++.|+++|+++++|.++|+.|+||+++||
T Consensus 2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999987
No 3
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=99.69 E-value=3.8e-17 Score=129.39 Aligned_cols=91 Identities=12% Similarity=0.314 Sum_probs=82.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHH
Q 022587 6 QMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEK 85 (295)
Q Consensus 6 ~ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~ 85 (295)
.+|++|++||++|+.++++|+.++..+... .|++|++.|++++..++||+++|++|++|++++ |+..|..|+.|+
T Consensus 2 ~sSelFe~YE~df~~l~~~i~~kl~~i~~~-~geerk~~i~~ie~~l~EA~ell~qMelE~r~~----p~~~R~~~~~kl 76 (102)
T 1vcs_A 2 SSGSSGEGYEQDFAVLTAEITSKIARVPRL-PPDEKKQMVANVEKQLEEARELLEQMDLEVREI----PPQSRGMYSNRM 76 (102)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHHHHHGGGS-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTTTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHhHHHHHHHH
Confidence 367899999999999999999999999874 789999999999999999999999999999998 558899999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 022587 86 QSMIKELNSYVALRKTYMN 104 (295)
Q Consensus 86 ~~~~~eL~~~~~l~k~~~~ 104 (295)
+.|+++|+. ++++++.
T Consensus 77 r~Yk~dL~~---lk~elk~ 92 (102)
T 1vcs_A 77 RSYKQEMGK---LETDFKR 92 (102)
T ss_dssp HHHHHHHHH---HHHHTHH
T ss_pred HHHHHHHHH---HHHHHHH
Confidence 999999988 5555543
No 4
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=99.67 E-value=4.8e-16 Score=121.94 Aligned_cols=92 Identities=10% Similarity=0.160 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHH
Q 022587 9 PQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSM 88 (295)
Q Consensus 9 ~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~ 88 (295)
++|++||++|+.++++|+.++.+++. ..|++|++.|++++..++||.++|++|++|++++.+ |++.|+.|++|+++|
T Consensus 1 ~lF~~YE~df~~~~~~i~~~l~~~~~-~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~--p~~~R~~~~~klr~Y 77 (97)
T 3onj_A 1 SLLISYESDFKTTLEQAKASLAEAPS-QPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIG--DASERATYKAKLREW 77 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Confidence 48999999999999999999999987 488999999999999999999999999999999821 568899999999999
Q ss_pred HHHHHH-HHHHHHHHh
Q 022587 89 IKELNS-YVALRKTYM 103 (295)
Q Consensus 89 ~~eL~~-~~~l~k~~~ 103 (295)
+++|+. +++..+.+.
T Consensus 78 k~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 78 KKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 999988 776665553
No 5
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.57 E-value=5.8e-15 Score=107.54 Aligned_cols=64 Identities=25% Similarity=0.419 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 146 KTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 146 ~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
++|++++++|.++.+++.|||++|.+|+.+|..|||+|.++++.|+++|+++++|.++|+.|+|
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 4689999999999999999999999999999999999999999999999999999999999986
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.43 E-value=7.5e-13 Score=99.89 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=70.5
Q ss_pred cHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 136 SNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 136 ~~rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
+.+++...+.++++++.+++.++.+++.||+++|.+|+.+|+.|+|||.++++.|+++++++++|.++|+.|++
T Consensus 6 ~~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 6 ELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999974
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=99.05 E-value=3.3e-10 Score=79.32 Aligned_cols=53 Identities=25% Similarity=0.395 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 022587 155 IKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI 207 (295)
Q Consensus 155 L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m 207 (295)
-.++.+++.||+++|..|+.+|..|+|||.++++.|+++++++++|.++|+.|
T Consensus 2 t~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 2 TRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 36788999999999999999999999999999999999999999999999864
No 8
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.82 E-value=5.8e-09 Score=79.09 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=67.8
Q ss_pred ccHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 135 MSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208 (295)
Q Consensus 135 ~~~rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~ 208 (295)
.+.+++......+.+++.++..++.+++.+++++|..|+..|..|+|||.++...|+.++.++++|.+.|+.|.
T Consensus 9 ~~~q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 9 TELEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677788889999999999999999999999999999999999999999999999999999999999887663
No 9
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.72 E-value=1.1e-07 Score=69.87 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 146 KTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 146 ~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
.+.+++.++..++.+++.+++++|..++..|..|.|+|.+++..|+.++.+++.|.+.|+.+..
T Consensus 5 ~~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 5 FTKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567889999999999999999999999999999999999999999999999999999998753
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=98.24 E-value=2.8e-05 Score=61.69 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhchHHHHHHHHH
Q 022587 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI---GRQVATDKCIMLFLFLI 224 (295)
Q Consensus 148 l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m---~Rr~~tdK~il~~iili 224 (295)
.++-.+.+.+.++.+.|..++-.+...-+.+|.+.++++...++.+..++..|.+.|+.- .|+..+.||++++++++
T Consensus 16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i 95 (109)
T 3hd7_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVI 95 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHH
Confidence 445566788899999999999999999999999999999999999999999999998654 44444444444443333
Q ss_pred HHHHHH
Q 022587 225 VCGVIA 230 (295)
Q Consensus 225 li~iI~ 230 (295)
++++++
T Consensus 96 ~~~i~~ 101 (109)
T 3hd7_B 96 LGIIIA 101 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 11
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.85 E-value=5.2e-05 Score=57.03 Aligned_cols=73 Identities=10% Similarity=0.160 Sum_probs=59.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022587 141 IDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVAT 213 (295)
Q Consensus 141 l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~t 213 (295)
++...+.+++.++.|+.....+....++|.+|.++|..|++.|+++.+.++.+++.|+.+.+-++.+.++...
T Consensus 7 ~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~ 79 (82)
T 2nps_D 7 MTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSD 79 (82)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3444556788889999999999999999999999999999999999999999999999999999999998643
No 12
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.73 E-value=9.5e-05 Score=53.04 Aligned_cols=64 Identities=14% Similarity=0.318 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 146 KTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 146 ~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
+.+.+.++.|+.....+....++|.+|.++|..|++.|+++.+.++.++..|+.+.+-++.+.|
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3577889999999999999999999999999999999999999999999999999988877653
No 13
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.54 E-value=0.00037 Score=52.95 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 146 KTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 146 ~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
.+.++.++.|+.....+....++|.+|..+|..|.+.|.++.++++.++..|..+.+-++.+.+
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 3466889999999999999999999999999999999999999999999999999998887754
No 14
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.46 E-value=0.00081 Score=48.23 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 022587 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEI 207 (295)
Q Consensus 147 ~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m 207 (295)
+-++.++.|+.....+....++|.+|..+|..|.+.|.++.+.++.++..|..+.+-++.+
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999999999999999999999999999999999999999887765
No 15
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00071 Score=48.51 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022587 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (295)
Q Consensus 147 ~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~ 206 (295)
+-++.++.|.....++.....+|.++..+|..|+++|.++.++++.++..+..+++-|+.
T Consensus 4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345778889999999999999999999999999999999999999999999999987764
No 16
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.23 E-value=0.00078 Score=51.20 Aligned_cols=63 Identities=13% Similarity=0.237 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 147 ~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
+.++.++.|+....++....++|.++..+|..|.+.|+++.++++.++..|..+.+-++.+.+
T Consensus 24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999999999999999999999999999988887654
No 17
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.15 E-value=0.0082 Score=45.81 Aligned_cols=60 Identities=8% Similarity=0.217 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 152 ~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
++.|...+..++|+.++=.+-.+.+-+..|.|+...++-++..+.-..=.+.-+.+.|++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888999999999999999888888777665555555555554
No 18
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=95.51 E-value=0.0041 Score=49.92 Aligned_cols=70 Identities=9% Similarity=0.219 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 022587 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFL 221 (295)
Q Consensus 152 ~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~i 221 (295)
.+.|...+..++|+..+=.+..+.+-+..|.|+...++-++....-..=++.-+.+.|++.-.++-++++
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~ii 101 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMII 101 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888888888899999999998888877766555555555556666654433333333
No 19
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=94.67 E-value=0.57 Score=42.13 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 022587 147 TMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVK 205 (295)
Q Consensus 147 ~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~ 205 (295)
.+.+-...+.+..+.+.|..+|-.+...-...|.+.|++|...+..+..++..|...|.
T Consensus 194 ~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~ 252 (267)
T 1dn1_B 194 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 252 (267)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566888899999999999999999999999999999999999888888887765
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.39 E-value=5.8 Score=47.12 Aligned_cols=74 Identities=7% Similarity=0.068 Sum_probs=57.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 137 NQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (295)
Q Consensus 137 ~rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr 210 (295)
-|+.+....+.++.+...|...+..+.+.++-=...-+++..-...-++..++++.+...|.+|.++|...+--
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 35566666777888888888888888877765555555666667777888999999999999999999988753
No 21
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=94.04 E-value=0.83 Score=34.48 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 022587 147 TMDETDQAIKRSQMVVEQTIEVGTQT---ATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLF 220 (295)
Q Consensus 147 ~l~~t~~~L~~s~r~l~eTeeiG~~i---l~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~ 220 (295)
.+.+....+++...++.+..+--.+= +++|...++.|...... --+.|+++=+.|-.+-++-++++.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~------F~~~A~~l~rkmwwkn~K~~iii~~ 76 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQ------FETSAAKLKRKYWWKNLKMMIILGV 76 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666665555433322 34455555544443332 2345555666677776654444433
No 22
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=94.03 E-value=0.58 Score=34.08 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 149 DETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVA 212 (295)
Q Consensus 149 ~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~ 212 (295)
.+-.+.+.+..+.+.|..++-.+...-...|.+.|+++...+..+..++..|...|..-.+.-.
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~ 69 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445668888899999999999999999999999999999999999999999999987666433
No 23
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=92.33 E-value=1.6 Score=31.22 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 153 QAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVA 212 (295)
Q Consensus 153 ~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~ 212 (295)
+.+.+..+.+.|..+|-.+...-...|.+.|++|...+..+..++..|...|..-.+.-.
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk 65 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQK 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888999999999999999999999999999999999999999999876655443
No 24
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=92.18 E-value=1.5 Score=30.98 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022587 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (295)
Q Consensus 148 l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~ 206 (295)
+.+-.+.+.+..+.+.|..++-.+...-...|.+.|+++...+..+..++..|.+.|+.
T Consensus 7 i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 7 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455668888899999999999999999999999999999999999999999988865
No 25
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=92.15 E-value=1.6 Score=31.00 Aligned_cols=62 Identities=6% Similarity=0.132 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 148 l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
+.+-...+.+..+.+.|..++-.+...-...|.+.|+++...+..+..++..|.+.|+.=.+
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455668888899999999999999999999999999999999999999999998876443
No 26
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=91.94 E-value=1.3 Score=31.09 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 022587 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKE 206 (295)
Q Consensus 152 ~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~ 206 (295)
...+.+..+.+.|..++-.+...-...|.+.|+++...+..+..++..|.+.|+.
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888999999999999999999999999999999999999999988864
No 27
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=91.05 E-value=4.3 Score=36.28 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208 (295)
Q Consensus 148 l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~ 208 (295)
+.+=.+.+....+.+.|..+|-.+...-...|.+.|++|...+..+..++..|...|..-.
T Consensus 212 i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~ 272 (279)
T 2xhe_B 212 IRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQAR 272 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444677899999999999999999999999999999999999999999999988876543
No 28
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=90.66 E-value=1 Score=32.68 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 1 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREI 66 (295)
Q Consensus 1 ~~~~~~ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~ 66 (295)
||||.+|++ +.+|+ ..|+.+...|. ++-..|++++..|++-+..|..+..|+
T Consensus 12 ~~~~~~mgt-i~eLq-------~~L~~K~eELr------~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 12 MASIEGRGS-LRDLQ-------YALQEKIEELR------QRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp -------CH-HHHHH-------HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCc-HHHHH-------HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999986 22232 22222222222 233456666666666666666555444
No 29
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=89.40 E-value=2.5 Score=31.16 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 148 l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
+.+-...+.+..+.+.|..+|-.+...-...|.+.|+++...+..+..++..|.+.|..-.+
T Consensus 16 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555668888899999999999999999999999999999999999999999998876544
No 30
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=82.22 E-value=12 Score=32.15 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=50.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 022587 144 GKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVK 205 (295)
Q Consensus 144 ~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~ 205 (295)
+.....+....+......+.+..++-.++.....+|.+.++++...+..+...+..+...|.
T Consensus 203 ~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~ 264 (279)
T 3c98_B 203 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 264 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457788889999999999999999999999999999999999999888776665555544
No 31
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=76.76 E-value=23 Score=27.16 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=36.3
Q ss_pred HHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 022587 176 LKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAI 231 (295)
Q Consensus 176 L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~i 231 (295)
++.=-..+..+.+.+......|.+|.+.=++-.++. --.++.++++++++++++.
T Consensus 51 Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~-~i~l~~~~i~~~i~~~~~~ 105 (109)
T 3hd7_B 51 IDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK-IMIIICCVILGIIIASTIG 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-eehHHHHHHHHHHHHHHhc
Confidence 333345566788888888888888888766655544 3456666666666665554
No 32
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=76.64 E-value=26 Score=27.67 Aligned_cols=86 Identities=10% Similarity=0.090 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHH
Q 022587 8 SPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQS 87 (295)
Q Consensus 8 s~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~ 87 (295)
-..|..+|.+|..+...=...+.+... ..+...+.+...+..-.++.+-+..+.-+.. ..-++..|+..+..
T Consensus 8 ~~~l~~Leae~q~L~~~E~qry~~eka--~AE~A~~~La~~~~l~~~i~er~~~i~~~~~------~~~yk~~y~~l~k~ 79 (119)
T 3etw_A 8 VGELQALDAEYQNLANQEEARFNEERA--QADAARQALAQNEQVYNELSQRAQRLQAEAN------TRFYKSQYQELASK 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------SCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHH
Confidence 347889999999887655555555433 2233444444444444445555555543222 22467778877777
Q ss_pred HHHHHHHHHHHHHH
Q 022587 88 MIKELNSYVALRKT 101 (295)
Q Consensus 88 ~~~eL~~~~~l~k~ 101 (295)
|.+.++.+....+.
T Consensus 80 Y~~~~keLd~~ik~ 93 (119)
T 3etw_A 80 YEDALKKLEAEMEQ 93 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77766664433333
No 33
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=69.16 E-value=6.8 Score=25.74 Aligned_cols=40 Identities=30% Similarity=0.377 Sum_probs=18.9
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 022587 193 IQFSIKKASQL-VKEIGRQVATDKCIMLFLFLIVCGVIAII 232 (295)
Q Consensus 193 ~d~~l~rs~r~-L~~m~Rr~~tdK~il~~iilili~iI~ii 232 (295)
+.+.+.||+.+ +.-=+|+-.++-++=+..|+|.+++|.+|
T Consensus 8 trsairras~ie~~~qarqnlqelfvnfclilicllli~ii 48 (52)
T 1fjk_A 8 TRSAIRRASTIEMPQQARQNLQNLFINFCLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666543 44445555555444444344333444333
No 34
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=68.85 E-value=5.3 Score=31.56 Aligned_cols=81 Identities=10% Similarity=0.109 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 022587 146 KTMDETDQAIKRSQMVVEQTIEVGTQ---TATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLF 222 (295)
Q Consensus 146 ~~l~~t~~~L~~s~r~l~eTeeiG~~---il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~~tdK~il~~ii 222 (295)
+.+.+....+++...++.+..+-=.+ -+++|...++.|.... ..--+.|+++=+.|-.+-++-++|+++++
T Consensus 33 d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S------~~F~k~A~kl~rkmwwkn~K~~iii~~iv 106 (119)
T 2kog_A 33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGA------SQFETSAAKLKRKYWWKNLKMMIILGVIC 106 (119)
T ss_dssp SHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSS------HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666776666552221 2334555565555443 33334566666777777777788877766
Q ss_pred HHHHHHHHHH
Q 022587 223 LIVCGVIAII 232 (295)
Q Consensus 223 lili~iI~ii 232 (295)
++++.+|++.
T Consensus 107 ~iii~iIi~~ 116 (119)
T 2kog_A 107 AIILIIIIVY 116 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 6555444443
No 35
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=62.20 E-value=29 Score=25.39 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 022587 39 NRQTKQLEELTGRMRECKRLIK 60 (295)
Q Consensus 39 ~~r~~~l~~le~~l~ea~~lL~ 60 (295)
.+|...+..++.+|.+.++.|-
T Consensus 48 ~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 48 QSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777766543
No 36
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=58.58 E-value=22 Score=27.47 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccC-----Ch--------hHHHHHHHHHHHHHHHHHHHH
Q 022587 9 PQLEQIHGEIRDNFRALSNGFQKLDKIK-----DS--------NRQTKQLEELTGRMRECKRLI 59 (295)
Q Consensus 9 ~~~e~ye~e~~~l~~~l~~~~~kl~~~~-----~~--------~~r~~~l~~le~~l~ea~~lL 59 (295)
+.++.++.++...=..|.-..+||.... ++ .+|...+..++.+|.+.++.|
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777666666665555553220 22 345556666666666666544
No 37
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=58.50 E-value=55 Score=24.50 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 022587 39 NRQTKQLEELTGRMRECKRLIKEMDREIKD 68 (295)
Q Consensus 39 ~~r~~~l~~le~~l~ea~~lL~qmelE~r~ 68 (295)
...+..+..+...+--..+||.+|+.|+..
T Consensus 33 P~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~ 62 (91)
T 4aj5_A 33 PTLKTVLNKIGDEIIVINELLNKLELEIQY 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999999999999999998874
No 38
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=57.95 E-value=40 Score=25.56 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 022587 10 QLEQIHGEIRDNFRALSNGFQKL 32 (295)
Q Consensus 10 ~~e~ye~e~~~l~~~l~~~~~kl 32 (295)
.++.++.++...=..|.-..+||
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKL 28 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKL 28 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333433
No 39
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=57.75 E-value=57 Score=24.43 Aligned_cols=60 Identities=8% Similarity=0.261 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 151 TDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQ 210 (295)
Q Consensus 151 t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr 210 (295)
+.+.|...+..+.|+..|=.+.++.+-+..|.|+...++-++....-..=.+.-+.+.|+
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rk 87 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888888999999999999998888887766655444444444444
No 40
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=56.33 E-value=44 Score=22.72 Aligned_cols=57 Identities=9% Similarity=0.182 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 153 QAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 153 ~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
+.|...+..+.|+..|=...++.+-...|.|+...++-++....-..=.+.-+.+.|
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r 58 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888889999889999999999999998888877666554433333333333
No 41
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.95 E-value=3.4e+02 Score=32.74 Aligned_cols=190 Identities=14% Similarity=0.133 Sum_probs=96.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhhccCCh-hHHHHHH----HHHHHHHHHHHHHHHHHHHHhchhccCCChhhhH
Q 022587 5 LQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDS-NRQTKQL----EELTGRMRECKRLIKEMDREIKDEEARNPPEVNK 79 (295)
Q Consensus 5 ~~ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~-~~r~~~l----~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~ 79 (295)
..+..++..=.+++.....-+..|++||...... ++=+..+ .+++.+=.+|+++++++..+....+. .+.
T Consensus 1902 ~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~-----~k~ 1976 (3245)
T 3vkg_A 1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEI-----KQK 1976 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 3456677777788888888889999998763211 2222233 34555566777888888876655421 121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhccCCCCCCCCCcc-hhhh---hhccccHHHHHHhhhhhhHHHHHHH
Q 022587 80 QLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTAD-ENVQ---VASSMSNQELIDAGKKTMDETDQAI 155 (295)
Q Consensus 80 ~~~~r~~~~~~eL~~~~~l~k~~~~~~~~~R~~Lf~~~~~~~~~~~~-~n~~---~~~~~~~rq~l~~~~~~l~~t~~~L 155 (295)
..........++-......+...+..++.+ .|+.+ .... ...-...++.+....+.+.+-.+.|
T Consensus 1977 ~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A------------~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l 2044 (3245)
T 3vkg_A 1977 DARELQVQLDVRNKEIAVQKVKAYADLEKA------------EPTGPLREEVEQLENAANELKLKQDEIVATITALEKSI 2044 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111222333333322110 01111 0000 0011122333344444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 156 KRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 156 ~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
...+...++...=-..+-.++..=..+|.++..=+....+.-.|=...+..+..+.
T Consensus 2045 ~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2045 ATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 55555555544444455555566667777888888888887777777777776554
No 42
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.71 E-value=11 Score=27.52 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 022587 222 FLIVCGVIAIIVVKVLTHI 240 (295)
Q Consensus 222 ilili~iI~iii~~~~~~~ 240 (295)
.+++++++++++|+++.++
T Consensus 20 gilliGllllliwk~~~~i 38 (79)
T 2knc_B 20 AILLIGLAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556777888888876665
No 43
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=51.58 E-value=22 Score=28.16 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=39.7
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHhhhhhhhccCCh-----hH-HHHHHHHHHHHHHHHH
Q 022587 1 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDS-----NR-QTKQLEELTGRMRECK 56 (295)
Q Consensus 1 ~~~~~~ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~-----~~-r~~~l~~le~~l~ea~ 56 (295)
||++....++++..-+++..+..+|.+-+.++... +. +. ..+-|.++..+|++|.
T Consensus 1 ~~nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st-~~~~~~lEsiAAKIIkDisdkId~Ce 61 (129)
T 3f6n_A 1 MANLNQIQKEVSEILSDQKSMKADIKAILELLGSQ-NPIKESLETVAAKIVNDLTKLINDCP 61 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchhhhHHHHHHHHHHHHHHHHhcCc
Confidence 78888888889999999999998888888777552 22 22 2345888888888873
No 44
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=50.52 E-value=57 Score=22.24 Aligned_cols=58 Identities=9% Similarity=0.252 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGR 209 (295)
Q Consensus 152 ~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~R 209 (295)
.+.|...+..+.|+..|=....+.+-+..|.|+...++-++....-..=.+.-+.+.|
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r 60 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888889999999999998888877766654433333333333
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.98 E-value=66 Score=31.59 Aligned_cols=27 Identities=11% Similarity=0.339 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 022587 8 SPQLEQIHGEIRDNFRALSNGFQKLDK 34 (295)
Q Consensus 8 s~~~e~ye~e~~~l~~~l~~~~~kl~~ 34 (295)
=.+|...|.+|...+.+|++.+..+.+
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHh
Confidence 356788888888888888877776643
No 46
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=46.82 E-value=91 Score=24.59 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHhh
Q 022587 197 IKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQQWQFSIFCLL 257 (295)
Q Consensus 197 l~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~iii~~~~~~~~~~~~~~~~~~~~~~~~ 257 (295)
+-..+++++.+.+......+.+++++++++.+++.++|.. -++.+|-+..+-++.++
T Consensus 8 ~~~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~e~~~~~~a~y~~~~t~ 64 (148)
T 3vou_A 8 ILTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYST----VEGLRPLDALYFSVVTL 64 (148)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH----TSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHH
Confidence 4445666776666554434444444444445555555543 35567765544444333
No 47
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=46.11 E-value=1.5e+02 Score=25.75 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhch
Q 022587 44 QLEELTGRMRECKRLIKEMDREIKD 68 (295)
Q Consensus 44 ~l~~le~~l~ea~~lL~qmelE~r~ 68 (295)
.+..++..+..++.-+.....++.+
T Consensus 33 el~~le~~~~~l~~~~~~~~~~l~d 57 (256)
T 3na7_A 33 DLDKALNDKEAKNKAILNLEEEKLA 57 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444444444
No 48
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=46.10 E-value=64 Score=24.51 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHhhc
Q 022587 198 KKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQQWQFSIFCLLS 258 (295)
Q Consensus 198 ~rs~r~L~~m~Rr~~tdK~il~~iilili~iI~iii~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (295)
-...++++.+.+......+...+++++++.+++.++|.. -|+.+|-+..+-++.++.
T Consensus 6 ~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~e~~~~~~a~y~~~~T~t 62 (114)
T 2q67_A 6 LTLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYST----VEGLRPIDALYFSVVTLT 62 (114)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH----HSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHhc
Confidence 345566666655553333333333333344445455543 355777766665555544
No 49
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=45.24 E-value=23 Score=22.01 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022587 219 LFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 219 ~~iilili~iI~iii~~~ 236 (295)
.++.+++.+++.+++|.+
T Consensus 7 ~ivalivalIiaIVVWti 24 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSI 24 (36)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555554
No 50
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=43.72 E-value=1.2e+02 Score=27.15 Aligned_cols=84 Identities=12% Similarity=0.216 Sum_probs=53.8
Q ss_pred cccHHHHHHHHH----------HHHHHHHHHhhhhh----hhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc
Q 022587 6 QMSPQLEQIHGE----------IRDNFRALSNGFQK----LDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEA 71 (295)
Q Consensus 6 ~ms~~~e~ye~e----------~~~l~~~l~~~~~k----l~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~ 71 (295)
++...|++|-.+ +-.+.++|+...++ |.++.........+.+++..+++++.++.++..++...+
T Consensus 34 ~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~~~~~La~~l~~~~- 112 (290)
T 3qb5_K 34 PVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGED- 112 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 344566666544 44566777755443 444322233567899999999999999999998887652
Q ss_pred CCChhhhHHHHHHHHHHHHHH
Q 022587 72 RNPPEVNKQLNDEKQSMIKEL 92 (295)
Q Consensus 72 ~~~~~~r~~~~~r~~~~~~eL 92 (295)
.-.+...+..-++.|..-+
T Consensus 113 --~yry~~~~s~~lQEyVEA~ 131 (290)
T 3qb5_K 113 --MHQFHRAITTGLQEYVEAV 131 (290)
T ss_dssp --STTTGGGTHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 2235555666666665443
No 51
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.44 E-value=49 Score=23.52 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022587 39 NRQTKQLEELTGRMRECKRLIKEMDREIK 67 (295)
Q Consensus 39 ~~r~~~l~~le~~l~ea~~lL~qmelE~r 67 (295)
+.|.+.|.+++.++.+.+.....+..|..
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~ 53 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLEND 53 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777766665555444333
No 52
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=40.50 E-value=1.5e+02 Score=24.23 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHHH-HHHHHH
Q 022587 42 TKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYV-ALRKTY 102 (295)
Q Consensus 42 ~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~~-~l~k~~ 102 (295)
...+..+++++++++ .++-.+.. ..|.|. +...-+...+.++.+.+ .+.|.+
T Consensus 75 ~~~~d~lekKl~~aq-------~kL~~L~P-~~P~Ya-k~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 75 KSVYDAATKKLTQAQ-------NKLQSLDP-ADPGYA-QAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp HHHHHHHHHHHHHHH-------HHHTTC--------C-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHhcCCC-CCcchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655555 45555533 245553 44445566677776633 244444
No 53
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=39.83 E-value=97 Score=21.82 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022587 155 IKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV 211 (295)
Q Consensus 155 L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~Rr~ 211 (295)
|...+..+.|+..|=...++.+-...|.|+...++-++....-..=.+.-+.+.|++
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ 66 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 66 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777778888888888887777776665554444444444443
No 54
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=39.76 E-value=91 Score=21.52 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 154 AIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIG 208 (295)
Q Consensus 154 ~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~rs~r~L~~m~ 208 (295)
.|...+..+.++..+-..-.+.|.+-.|.|+.+.++.++....-..=.+.-+.+.
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~ 59 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMM 59 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888999999999888888877666554444433333
No 55
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=39.57 E-value=1.2e+02 Score=22.68 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022587 43 KQLEELTGRMRECKRLIKEMDR 64 (295)
Q Consensus 43 ~~l~~le~~l~ea~~lL~qmel 64 (295)
....+++..++++.+.|+.++-
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~ 57 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDR 57 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555553
No 56
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=39.40 E-value=35 Score=21.90 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 022587 223 LIVCGVIAIIVVKVLTHIK 241 (295)
Q Consensus 223 lili~iI~iii~~~~~~~~ 241 (295)
+++++++++.+||.+.+++
T Consensus 20 ivliGl~lLliwk~~~~i~ 38 (43)
T 2k9j_B 20 ILLIGLAALLIWKLLITIH 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 4557888888898877664
No 57
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=39.12 E-value=30 Score=21.23 Aligned_cols=7 Identities=14% Similarity=0.135 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 022587 217 IMLFLFL 223 (295)
Q Consensus 217 il~~iil 223 (295)
.+...++
T Consensus 6 ~lg~Gvl 12 (35)
T 2lk9_A 6 LLGIGIL 12 (35)
T ss_dssp HHHHHHH
T ss_pred eecccHH
Confidence 3333333
No 58
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=37.30 E-value=1.7e+02 Score=23.81 Aligned_cols=27 Identities=11% Similarity=0.330 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 43 KQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 43 ~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
..+.++......++..|+.|+.+....
T Consensus 85 ~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 111 (180)
T 1s94_A 85 ELMTDIKRTANKVRGKLKTIELNIEQE 111 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777778888888888766544
No 59
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=36.46 E-value=1.3e+02 Score=22.34 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhc-c--CChhHHHHHHHHHHHHHHHHH
Q 022587 10 QLEQIHGEIRDNFRALSNGFQKLDK-I--KDSNRQTKQLEELTGRMRECK 56 (295)
Q Consensus 10 ~~e~ye~e~~~l~~~l~~~~~kl~~-~--~~~~~r~~~l~~le~~l~ea~ 56 (295)
++-..+..+......|.+.+++.-+ . ..+++|...+..++..+.+|.
T Consensus 26 ~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~ 75 (104)
T 4afl_A 26 LMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCK 75 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHH
Confidence 3444455555555555444444211 0 133444444444444444444
No 60
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=35.82 E-value=1.4e+02 Score=22.38 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHH
Q 022587 20 DNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIK 60 (295)
Q Consensus 20 ~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~ 60 (295)
..-.++.+.+..+.. .+++|...|++++.+++++-+-|+
T Consensus 25 kQk~eL~~~l~~l~~--e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 25 KQKDQLNSLLASLES--EGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc
Confidence 333445555555554 568899999999999998866554
No 61
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=34.79 E-value=4.4e+02 Score=27.99 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 148 MDETDQAIKRSQMVVEQTIEVGTQTATTLK 177 (295)
Q Consensus 148 l~~t~~~L~~s~r~l~eTeeiG~~il~~L~ 177 (295)
+++..+.+.+..+-..+.++--.+..++|.
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444
No 62
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=34.21 E-value=3.2e+02 Score=26.51 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=7.8
Q ss_pred ccHHHHHHHHHHHHH
Q 022587 7 MSPQLEQIHGEIRDN 21 (295)
Q Consensus 7 ms~~~e~ye~e~~~l 21 (295)
|-..|..|..|+..+
T Consensus 7 yq~~la~yq~elarv 21 (497)
T 3iox_A 7 YQAKLTAYQTELARV 21 (497)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555565555544
No 63
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.12 E-value=2.5e+02 Score=27.01 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 022587 8 SPQLEQIHGEIRDNFRALSNGFQKLDK 34 (295)
Q Consensus 8 s~~~e~ye~e~~~l~~~l~~~~~kl~~ 34 (295)
..-|-.|+..+..-+.+|+..+..|..
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 345667777776666777666666653
No 64
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=33.94 E-value=1.6e+02 Score=22.67 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=9.4
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 022587 7 MSPQLEQIHGEIRDNFRAL 25 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l 25 (295)
||.+-.-|+.++..+-+.|
T Consensus 11 ~~~~~~~ye~~I~~LR~qi 29 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQV 29 (119)
T ss_dssp --CCTHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 5555556666666554433
No 65
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=33.93 E-value=1.9e+02 Score=23.74 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHH
Q 022587 158 SQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFS 196 (295)
Q Consensus 158 s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~ 196 (295)
.-.++.....+|..++.-|+.|.+++.++...+..+...
T Consensus 59 LaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~ 97 (159)
T 3p8c_F 59 LASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQT 97 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999999999999999999998888876655
No 66
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=33.60 E-value=43 Score=26.19 Aligned_cols=36 Identities=3% Similarity=-0.025 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhH
Q 022587 216 CIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQQWQF 251 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~~~~~~~~~~~~~~~~~ 251 (295)
++.++++++++.+++..++..+-+...+..+.++..
T Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~ 43 (139)
T 3eff_K 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPR 43 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHH
Confidence 444444455555556666666655555544443333
No 67
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=33.40 E-value=51 Score=22.35 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 022587 223 LIVCGVIAIIVVK 235 (295)
Q Consensus 223 lili~iI~iii~~ 235 (295)
++++++++++.||
T Consensus 20 LLLL~Lii~~LwK 32 (54)
T 2l8s_A 20 LLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455566666665
No 68
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.11 E-value=1.6e+02 Score=22.16 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 022587 80 QLNDEKQSMIKELNSY 95 (295)
Q Consensus 80 ~~~~r~~~~~~eL~~~ 95 (295)
.+.+|-..+..+|+.|
T Consensus 75 ~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 75 LLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445556666663
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=31.83 E-value=2.1e+02 Score=23.36 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh-hhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 12 EQIHGEIRDNFRALSNGFQK-LDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 12 e~ye~e~~~l~~~l~~~~~k-l~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
+..|..|+.+|.+....... +-. .-..-...|..++..+...+.-|.+++.|++.-
T Consensus 38 d~~E~~~~~l~~e~~~~~~~~~vs--~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK 94 (152)
T 3a7p_A 38 NDKEAHLNELFQDNSGAIGGNIVS--HDDALLNTLAILQKELKSKEQEIRRLKEVIALK 94 (152)
T ss_dssp -------------------CHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhccCCCccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888776522221 000 002234588888889988888888888887763
No 70
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.24 E-value=1.3e+02 Score=20.63 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHH
Q 022587 152 DQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFS 196 (295)
Q Consensus 152 ~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~ 196 (295)
.+.|...+..+.|+..|=...++.+-...|.|+...++-++....
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~ 52 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEAT 52 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345666777777888877888888888888888877776665544
No 71
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=30.68 E-value=3.8e+02 Score=26.00 Aligned_cols=14 Identities=7% Similarity=0.237 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhhhh
Q 022587 18 IRDNFRALSNGFQK 31 (295)
Q Consensus 18 ~~~l~~~l~~~~~k 31 (295)
|+.-++.-+..+.+
T Consensus 7 yq~~la~yq~elar 20 (497)
T 3iox_A 7 YQAKLTAYQTELAR 20 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 72
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.33 E-value=1.4e+02 Score=20.84 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhch
Q 022587 44 QLEELTGRMRECKRLIKEMDREIKD 68 (295)
Q Consensus 44 ~l~~le~~l~ea~~lL~qmelE~r~ 68 (295)
.++.....+.+.++.|..++.|+.+
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555554443
No 73
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=30.28 E-value=1.1e+02 Score=24.66 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=22.7
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 74 PPEVNKQLNDEKQSMIKELNSYVALRKTYMN 104 (295)
Q Consensus 74 ~~~~r~~~~~r~~~~~~eL~~~~~l~k~~~~ 104 (295)
+|.+..+ ..|...+.+.|...+++...|..
T Consensus 108 dp~y~ek-K~Rc~yL~~KLsHIK~lI~~YD~ 137 (140)
T 1xaw_A 108 SADYKSK-KNHCKQLKSKLSHIKKMVGDYDR 137 (140)
T ss_dssp SHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHHhhhc
Confidence 5566544 34778889999999999888865
No 74
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=29.35 E-value=59 Score=23.00 Aligned_cols=26 Identities=12% Similarity=0.460 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch
Q 022587 43 KQLEELTGRMRECKRLIKEMDREIKD 68 (295)
Q Consensus 43 ~~l~~le~~l~ea~~lL~qmelE~r~ 68 (295)
+.+.+++..|+.|+..|+.++.|++.
T Consensus 26 ~~vgdiEqeLe~Ck~sIrrLE~evn~ 51 (72)
T 1k1f_A 26 RSVGDIEQELERAKASIRRLEQEVNQ 51 (72)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 46788999999999999999998875
No 75
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=29.07 E-value=60 Score=23.34 Aligned_cols=44 Identities=11% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHH
Q 022587 154 AIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSI 197 (295)
Q Consensus 154 ~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l 197 (295)
.|...+..+.|+..|=...++.+-+..|.|+...++-++....-
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s 59 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35555666777777777777788888888888877777655443
No 76
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=28.12 E-value=2.2e+02 Score=22.33 Aligned_cols=73 Identities=10% Similarity=0.118 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhchhccCCChhhhHHH
Q 022587 9 PQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMREC-------KRLIKEMDREIKDEEARNPPEVNKQL 81 (295)
Q Consensus 9 ~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea-------~~lL~qmelE~r~l~~~~~~~~r~~~ 81 (295)
..|.++|.+|..|...=...+. ++++....+...|.+- .+.+..+. .+.. -..++..|
T Consensus 9 s~l~~LEaeyq~L~~kE~qryn---------qeka~AE~A~~~L~~~~~m~~~i~ek~~~i~----~~~~--~~~yK~eY 73 (119)
T 2avr_X 9 GELQALDAEYQNLANQEEARFN---------EERAQADAARQALAQNEQVYNELSQRAQRLQ----AEAN--TRFYKSQY 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTT--SCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc--ccHHHHHH
Confidence 4788888888888643333333 3333333333333333 23333333 2211 23577777
Q ss_pred HHHHHHHHHHHHHHH
Q 022587 82 NDEKQSMIKELNSYV 96 (295)
Q Consensus 82 ~~r~~~~~~eL~~~~ 96 (295)
+.-+..|..-++.+.
T Consensus 74 ~~L~KkYk~~~~~Ld 88 (119)
T 2avr_X 74 QELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766655533
No 77
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=27.80 E-value=87 Score=19.77 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 022587 222 FLIVCGVIAIIVVKV 236 (295)
Q Consensus 222 ilili~iI~iii~~~ 236 (295)
+.-++++|+++.|.+
T Consensus 20 maGiIG~IllI~y~I 34 (40)
T 1afo_A 20 MAGVIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444455554543
No 78
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=27.15 E-value=3.4e+02 Score=24.24 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHH
Q 022587 48 LTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNS 94 (295)
Q Consensus 48 le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~ 94 (295)
++.-++.....++.++.++..++...-....+....++-.+++++..
T Consensus 162 ld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~ 208 (339)
T 4ev6_A 162 LNEITRSYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVY 208 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 33344444444444444444443221111223344566666666655
No 79
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=26.98 E-value=3e+02 Score=23.64 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=45.2
Q ss_pred HHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 022587 20 DNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALR 99 (295)
Q Consensus 20 ~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~~~l~ 99 (295)
.--..|..-+++++. +-..|+.-+..+..=-...+.+|+...--....|. ..+..+..+++.+.+-=++|..-.
T Consensus 98 ~rA~~LK~iLSrIPd--EI~dR~~FL~tIKeIAsaIKklLDAvn~v~~~~~~----~~k~~le~~KreFVkySKrFS~TL 171 (213)
T 3ajm_A 98 EKARALKQILSKIPD--EINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQY----QNRRALEHQKKEFVKYSKSFSDTL 171 (213)
T ss_dssp HHHHHHHHHHHTHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch--hhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHhhHhhHHH
Confidence 333455555677754 22446655555555445555666666644455533 366778888888776656666666
Q ss_pred HHH
Q 022587 100 KTY 102 (295)
Q Consensus 100 k~~ 102 (295)
|+|
T Consensus 172 KeY 174 (213)
T 3ajm_A 172 KTY 174 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 666
No 80
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.81 E-value=2.2e+02 Score=22.07 Aligned_cols=22 Identities=5% Similarity=0.206 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022587 42 TKQLEELTGRMRECKRLIKEMD 63 (295)
Q Consensus 42 ~~~l~~le~~l~ea~~lL~qme 63 (295)
+..|..++..++..+..-..++
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 3344444444444443333333
No 81
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=26.31 E-value=1e+02 Score=25.64 Aligned_cols=28 Identities=0% Similarity=0.065 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhh
Q 022587 222 FLIVCGVIAIIVVKVLTHIKSQHNFQQW 249 (295)
Q Consensus 222 ilili~iI~iii~~~~~~~~~~~~~~~~ 249 (295)
+++++.++...+++.+-+...++.|.+.
T Consensus 139 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 166 (223)
T 1orq_C 139 AVMLTVLYGAFAIYIVEYPDPNSSIKSV 166 (223)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTCSCCSH
T ss_pred HHHHHHHHHHHHHHHHHhCCcCCCcCcc
Confidence 3333444444555566555555555543
No 82
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.21 E-value=76 Score=20.48 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhhc
Q 022587 224 IVCGVIAIIVVKVLTHI 240 (295)
Q Consensus 224 ili~iI~iii~~~~~~~ 240 (295)
+++++|+++++.++++.
T Consensus 22 ~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 22 LLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 33444455555544443
No 83
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=26.01 E-value=1.6e+02 Score=20.00 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhc
Q 022587 14 IHGEIRDNFRALSNGFQKLDK 34 (295)
Q Consensus 14 ye~e~~~l~~~l~~~~~kl~~ 34 (295)
+|.+...-+..|...++++..
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~ 24 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRH 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777655
No 84
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=25.60 E-value=1.2e+02 Score=19.96 Aligned_cols=31 Identities=3% Similarity=-0.186 Sum_probs=18.9
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 022587 206 EIGRQVATDKCIMLFLFLIVCGVIAIIVVKV 236 (295)
Q Consensus 206 ~m~Rr~~tdK~il~~iilili~iI~iii~~~ 236 (295)
.|.||-+-|++.+..+.++..++++=++.++
T Consensus 8 dm~RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 4788888878776554444444444455555
No 85
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=25.57 E-value=1.6e+02 Score=20.09 Aligned_cols=51 Identities=8% Similarity=0.137 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHH
Q 022587 145 KKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQF 195 (295)
Q Consensus 145 ~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~ 195 (295)
++.++++...+.++..+..+|-+-=..=-+.|..=+..+..++..++....
T Consensus 8 ~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k 58 (65)
T 1gl2_C 8 TQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRK 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHH
Confidence 344444444444444444443332222233344444444444444444433
No 86
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.35 E-value=93 Score=19.93 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 022587 42 TKQLEELTGRMREC 55 (295)
Q Consensus 42 ~~~l~~le~~l~ea 55 (295)
..+|.+++.++.++
T Consensus 22 e~kI~~lqkKlkeL 35 (42)
T 2l5g_B 22 EQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 87
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.78 E-value=2e+02 Score=20.93 Aligned_cols=19 Identities=16% Similarity=0.454 Sum_probs=12.7
Q ss_pred cc-HHHHHHHHHHHHHHHHH
Q 022587 7 MS-PQLEQIHGEIRDNFRAL 25 (295)
Q Consensus 7 ms-~~~e~ye~e~~~l~~~l 25 (295)
|| ++|+.+|+.+...+.-|
T Consensus 3 MS~ElleqLE~KIq~avdtI 22 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI 22 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 66 67777777766665444
No 88
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.48 E-value=2.5e+02 Score=21.73 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHhc
Q 022587 52 MRECKRLIKEMDREIK 67 (295)
Q Consensus 52 l~ea~~lL~qmelE~r 67 (295)
+.+.+..|..+..|+.
T Consensus 38 i~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEID 53 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344433333
No 89
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=23.75 E-value=1.2e+02 Score=26.71 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhhHHHhhHH-------HHHHHHHHHHHHHHHHHHHHH---HHhhhchHHHHH
Q 022587 167 EVGTQTATTLKGQTDQMGRIV-------NELDTIQFSIKKASQLVKEIG---RQVATDKCIMLF 220 (295)
Q Consensus 167 eiG~~il~~L~~QrEqL~r~~-------~~l~~~d~~l~rs~r~L~~m~---Rr~~tdK~il~~ 220 (295)
++=.+++.+|.+|+.++..-. +.++.+-+.++.+...|..+. ..+..|+|++.+
T Consensus 59 dlK~eLlKeLERq~~~L~~~~~~P~Vd~~~l~~~l~~l~~~~~~L~~~~r~Gq~Lrede~L~~i 122 (247)
T 2oez_A 59 QLKSELAKDLEKQRLSYRHWLNVEGVDQEALNSLLNEIDVVHSQLMGAERFGQALKEDRFLSSI 122 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCcccchhhHhHHHHHH
Confidence 567789999999999999864 778888888988888887754 457889988865
No 90
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=23.60 E-value=42 Score=26.36 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=0.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 7 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMD 63 (295)
Q Consensus 7 ms~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qme 63 (295)
+-..+..|+.++...-.+|.....++......+.+...-.++.....++...-..+.
T Consensus 28 l~~~~~~~~~el~~~~~el~~~~~~lq~~ls~~~~~~~~~el~~~~~~~q~~~~~~~ 84 (143)
T 1u2m_A 28 LENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE 84 (143)
T ss_dssp TC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666655555543111334444444445554444444444433
No 91
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.56 E-value=2.6e+02 Score=21.72 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 022587 39 NRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALR 99 (295)
Q Consensus 39 ~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~~~l~ 99 (295)
++|-..|..+...++..+.-|+.+..|.+.. -..|..++..+..+|...+.++
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~--------v~ql~~~i~~Le~eL~e~r~~~ 63 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQRV--------VLQLKGHVSELEADLAEQQHLR 63 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888865 2356777777777777754443
No 92
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=23.29 E-value=1.1e+02 Score=17.44 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 022587 221 LFLIVCGVIAIIVV 234 (295)
Q Consensus 221 iilili~iI~iii~ 234 (295)
+++|+++++..++.
T Consensus 8 ~lLIviav~aaVll 21 (26)
T 3j1r_A 8 LLLILIAVAAAVLL 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 93
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=23.21 E-value=2e+02 Score=20.33 Aligned_cols=33 Identities=6% Similarity=0.091 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 37 DSNRQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 37 ~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
++++-......+...-++++..|..|...+..+
T Consensus 9 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 9 TPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555544444
No 94
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=23.10 E-value=1.4e+02 Score=22.65 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=2.8
Q ss_pred Hhchhcc
Q 022587 65 EIKDEEA 71 (295)
Q Consensus 65 E~r~l~~ 71 (295)
++-++++
T Consensus 65 kLD~Iet 71 (99)
T 1m7k_A 65 ELDSVET 71 (99)
T ss_dssp HHTTCCC
T ss_pred HHCCcCc
Confidence 3334433
No 95
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.65 E-value=1.6e+02 Score=22.77 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 022587 40 RQTKQLEELTGRMRECKRLIKEMDREIKDE 69 (295)
Q Consensus 40 ~r~~~l~~le~~l~ea~~lL~qmelE~r~l 69 (295)
+-+..|..++..++..+..-..++.-+.+.
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344566666666666666666665544443
No 96
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=22.50 E-value=11 Score=33.84 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=18.3
Q ss_pred ccCCCCCCCCCCCCCCCCccccccc
Q 022587 263 VVNPNNKDIRDIPGLAPPAPARRLL 287 (295)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (295)
+|--+|+.++.-||+.|.+-.|-++
T Consensus 90 vIA~ED~rFy~H~GvD~~gi~RA~~ 114 (263)
T 3vmt_A 90 FISMEDERFYNHHGFDLKGTTRALF 114 (263)
T ss_dssp HHHHHCTTTTTSSSCCHHHHHTTTT
T ss_pred HHHHHcchhhhCCCCCHHHHHHHHH
Confidence 4556888899999998877555544
No 97
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=22.33 E-value=3.1e+02 Score=22.20 Aligned_cols=12 Identities=8% Similarity=0.064 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 022587 10 QLEQIHGEIRDN 21 (295)
Q Consensus 10 ~~e~ye~e~~~l 21 (295)
.++.+..++..+
T Consensus 14 ~~~~~~~~~~~l 25 (284)
T 1c1g_A 14 DKENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 334444443333
No 98
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=22.21 E-value=4.2e+02 Score=23.65 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=50.0
Q ss_pred cccHHHHHHHHH----------HHHHHHHHHhhhhh----hhccCC-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhchh
Q 022587 6 QMSPQLEQIHGE----------IRDNFRALSNGFQK----LDKIKD-SNRQTKQLEELTGRMRECKR-LIKEMDREIKDE 69 (295)
Q Consensus 6 ~ms~~~e~ye~e----------~~~l~~~l~~~~~k----l~~~~~-~~~r~~~l~~le~~l~ea~~-lL~qmelE~r~l 69 (295)
++.+.|++|..+ +..+.++|+...++ |+++.. +......+.+++..+.++.+ ++.++-.++...
T Consensus 29 ~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~la~~l~~~ 108 (298)
T 3axj_B 29 PIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQ 108 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 345677766654 44555666666544 344322 25567788888888888865 457777666543
Q ss_pred ccCCChhhhHHHHHHHHHHHH
Q 022587 70 EARNPPEVNKQLNDEKQSMIK 90 (295)
Q Consensus 70 ~~~~~~~~r~~~~~r~~~~~~ 90 (295)
.+-.++..+..-++.|..
T Consensus 109 ---~~y~y~~~~s~~lQE~VE 126 (298)
T 3axj_B 109 ---DVYQFRSSYSPGLQEFIQ 126 (298)
T ss_dssp ---CTTTTHHHHHHHHHHHHH
T ss_pred ---CHHHHHhccCHHHHHHHH
Confidence 122366666667777763
No 99
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=22.16 E-value=3.1e+02 Score=23.59 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 44 QLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMN 104 (295)
Q Consensus 44 ~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~~~~l~k~~~~ 104 (295)
....++..|..+++.|+++...+..+....++. ...++.|+..+...+.. ++..+..
T Consensus 166 ~~e~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~-a~~i~~r~~~l~~~w~~---L~~~~~~ 222 (235)
T 2odv_A 166 RAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQ-GEQMYRRVYRLHKRLVA---IRTEYNL 222 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 467788889999999999988888776544443 45677787777666555 6666544
No 100
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=21.82 E-value=3.8e+02 Score=22.97 Aligned_cols=15 Identities=7% Similarity=0.368 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 022587 48 LTGRMRECKRLIKEM 62 (295)
Q Consensus 48 le~~l~ea~~lL~qm 62 (295)
++..++.|++--+.+
T Consensus 170 ae~el~~Ak~~Ye~l 184 (243)
T 4a3a_A 170 AEEEFQKAQKVFEEF 184 (243)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444333333
No 101
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.49 E-value=94 Score=20.98 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 022587 223 LIVCGVIAIIVVKV 236 (295)
Q Consensus 223 lili~iI~iii~~~ 236 (295)
++++++++++.||.
T Consensus 23 LllL~li~~~LwK~ 36 (54)
T 2knc_A 23 LLLLTILVLAMWKV 36 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 44455566666653
No 102
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.33 E-value=2.7e+02 Score=20.97 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHhch
Q 022587 54 ECKRLIKEMDREIKD 68 (295)
Q Consensus 54 ea~~lL~qmelE~r~ 68 (295)
+.++=|++|+.|+.-
T Consensus 51 eL~~EI~~L~~eI~~ 65 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQ 65 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444433333
No 103
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=20.68 E-value=2.8e+02 Score=21.04 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHHHHH
Q 022587 46 EELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNS 94 (295)
Q Consensus 46 ~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~eL~~ 94 (295)
...+++++|-+.+|+|..-|+.++ | ....|+-.|++|-++
T Consensus 62 ~~~~~kv~en~~~L~QIQ~ei~s~--------r-d~hkR~~E~QkEQ~S 101 (115)
T 1ezj_A 62 KSSARKVDENKQLLKQIQESVESF--------R-DIYKRFSEYQKEQNS 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHH--------H-HHHHHHHHhHHHHHH
Confidence 456778899999999999888875 2 233477777777665
No 104
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=20.42 E-value=3e+02 Score=21.27 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 022587 11 LEQIHGEIRDNFRALSNGFQK 31 (295)
Q Consensus 11 ~e~ye~e~~~l~~~l~~~~~k 31 (295)
++.++.++...=..|.-..+|
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQK 44 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQK 44 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333333333
No 105
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=20.32 E-value=2.4e+02 Score=20.13 Aligned_cols=62 Identities=8% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHH
Q 022587 137 NQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIK 198 (295)
Q Consensus 137 ~rq~l~~~~~~l~~t~~~L~~s~r~l~eTeeiG~~il~~L~~QrEqL~r~~~~l~~~d~~l~ 198 (295)
+.+.+..+.+.++++...+.+++.+..++-+-=..==+.|..=+..+..++..++.....|.
T Consensus 10 ~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~ 71 (81)
T 2nps_C 10 NTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILT 71 (81)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 34555666666667766666666666665443333345555666666666666666555544
No 106
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.31 E-value=1.2e+02 Score=19.60 Aligned_cols=16 Identities=0% Similarity=0.100 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhhc
Q 022587 225 VCGVIAIIVVKVLTHI 240 (295)
Q Consensus 225 li~iI~iii~~~~~~~ 240 (295)
++++|++.++.++++.
T Consensus 22 ~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 22 ILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3444445545444443
No 107
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=20.18 E-value=1.5e+02 Score=20.52 Aligned_cols=31 Identities=13% Similarity=0.370 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 022587 38 SNRQTKQLEELTGRMRECKRLIKEMDREIKD 68 (295)
Q Consensus 38 ~~~r~~~l~~le~~l~ea~~lL~qmelE~r~ 68 (295)
|.+|...|..++..+.+..++..+|..-+..
T Consensus 1 ~~eR~~ei~~ie~~i~eL~~iF~dla~lV~e 31 (71)
T 2nps_B 1 GSMRETAIQQLEADILDVNQIFKDLAMMIHD 31 (71)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888765543
No 108
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=20.07 E-value=96 Score=22.87 Aligned_cols=29 Identities=7% Similarity=-0.390 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccch
Q 022587 219 LFLFLIVCGVIAIIVVKVLTHIKSQHNFQ 247 (295)
Q Consensus 219 ~~iilili~iI~iii~~~~~~~~~~~~~~ 247 (295)
.++++++++++..+++..+-+...+..|.
T Consensus 11 ~~~~~~~~~~~~a~~~~~~E~~~~~~~~~ 39 (103)
T 2k1e_A 11 AEEELQKVLEEASKKAVEAERGAPGAALI 39 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCCcccc
Confidence 33344444555555555555544444444
Done!