Query 022587
Match_columns 295
No_of_seqs 184 out of 582
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 07:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022587.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022587hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcsa1 a.47.2.1 (A:8-96) Vesi 99.7 1.5E-16 1.1E-20 121.0 9.4 85 12-104 1-85 (89)
2 d1lrza1 a.2.7.4 (A:245-309) Me 71.8 11 0.0008 24.9 7.8 51 11-61 1-62 (65)
3 d1io1a_ e.32.1.1 (A:) Phase 1 33.5 75 0.0054 25.4 8.4 56 39-94 13-69 (395)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 33.2 21 0.0015 25.4 4.1 28 215-242 36-63 (107)
5 d1q90a3 f.23.23.1 (A:248-292) 32.6 34 0.0025 20.6 4.2 37 216-265 7-43 (45)
6 d1ez3a_ a.47.2.1 (A:) Syntaxin 32.4 77 0.0056 22.3 11.5 62 43-104 52-118 (124)
7 d1u2ma_ f.48.1.1 (A:) Periplas 30.3 13 0.00093 27.3 2.4 55 8-62 29-83 (143)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 27.9 32 0.0023 23.9 4.2 25 216-240 31-55 (100)
9 d1rh5b_ f.23.28.1 (B:) Preprot 26.0 41 0.003 21.3 4.0 28 210-237 21-48 (56)
10 d1gqea_ e.38.1.1 (A:) Polypept 21.4 2.3E+02 0.016 24.0 9.6 31 21-51 7-37 (362)
11 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 21.2 49 0.0036 21.5 3.7 26 43-68 26-51 (67)
No 1
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.66 E-value=1.5e-16 Score=120.99 Aligned_cols=85 Identities=13% Similarity=0.335 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCChhhhHHHHHHHHHHHHH
Q 022587 12 EQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKE 91 (295)
Q Consensus 12 e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qmelE~r~l~~~~~~~~r~~~~~r~~~~~~e 91 (295)
|+||+||+.++++|+.+++++.. ..|++|++.|++++..++||.++|++|++|++++ |++.|.+|++|+++|+.+
T Consensus 1 E~YE~~y~~l~a~i~~kl~~i~~-~~geerk~~l~~ie~~leEA~ell~qMelEvr~~----p~s~R~~~~~klr~Yk~d 75 (89)
T d1vcsa1 1 EGYEQDFAVLTAEITSKIARVPR-LPPDEKKQMVANVEKQLEEARELLEQMDLEVREI----PPQSRGMYSNRMRSYKQE 75 (89)
T ss_dssp CCSHHHHHHHHHHHHHHHHHGGG-SCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTTTHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999988 4889999999999999999999999999999998 557899999999999999
Q ss_pred HHHHHHHHHHHhh
Q 022587 92 LNSYVALRKTYMN 104 (295)
Q Consensus 92 L~~~~~l~k~~~~ 104 (295)
|+. ++++++.
T Consensus 76 l~~---lk~elk~ 85 (89)
T d1vcsa1 76 MGK---LETDFKR 85 (89)
T ss_dssp HHH---HHHHTHH
T ss_pred HHH---HHHHHHh
Confidence 998 6666643
No 2
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=71.77 E-value=11 Score=24.90 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhh----hhccCChhHHHH-------HHHHHHHHHHHHHHHHHH
Q 022587 11 LEQIHGEIRDNFRALSNGFQK----LDKIKDSNRQTK-------QLEELTGRMRECKRLIKE 61 (295)
Q Consensus 11 ~e~ye~e~~~l~~~l~~~~~k----l~~~~~~~~r~~-------~l~~le~~l~ea~~lL~q 61 (295)
|++|...+..-...|.+.+.+ |.+.+++.+... ++...+.+++||++++..
T Consensus 1 F~eYl~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~li~k 62 (65)
T d1lrza1 1 FDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEE 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455655555555555555544 444344444444 444455566666666654
No 3
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=33.46 E-value=75 Score=25.42 Aligned_cols=56 Identities=11% Similarity=0.218 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhccCCChhhhHHHHHHHHHHHHHHHH
Q 022587 39 NRQTKQLEELTGRMRECKRLIKEMDR-EIKDEEARNPPEVNKQLNDEKQSMIKELNS 94 (295)
Q Consensus 39 ~~r~~~l~~le~~l~ea~~lL~qmel-E~r~l~~~~~~~~r~~~~~r~~~~~~eL~~ 94 (295)
+.-...|+..+..|.|+.++|..|.- -++.-.....+..|..++..++.+++||++
T Consensus 13 ~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ 69 (395)
T d1io1a_ 13 NDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDR 69 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566888899999999999998873 222222334577788888777777777766
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=33.18 E-value=21 Score=25.35 Aligned_cols=28 Identities=4% Similarity=0.192 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022587 215 KCIMLFLFLIVCGVIAIIVVKVLTHIKS 242 (295)
Q Consensus 215 K~il~~iilili~iI~iii~~~~~~~~~ 242 (295)
-.++++++++++++.++++|..+++.++
T Consensus 36 ~~v~~i~~~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 36 HFVLYIITAVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3455555565666666666666555443
No 5
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=32.63 E-value=34 Score=20.63 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHhhccCccccC
Q 022587 216 CIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQQWQFSIFCLLSMNFQVVN 265 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (295)
+++++.+.++++=|++|+-|+ ||----+-.|||++-|
T Consensus 7 gll~F~~~v~laQi~LVLKKK-------------QfEKVQ~aEmNF~~h~ 43 (45)
T d1q90a3 7 GLLVFFSFVLLTQVLLVLKKK-------------QFEKVQLAEMNFHHHH 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHTSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhcchhcc
Confidence 444555555556666666555 5555555667766543
No 6
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.44 E-value=77 Score=22.29 Aligned_cols=62 Identities=15% Similarity=0.359 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhccCC--Chhh---hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022587 43 KQLEELTGRMRECKRLIKEMDREIKDEEARN--PPEV---NKQLNDEKQSMIKELNSYVALRKTYMN 104 (295)
Q Consensus 43 ~~l~~le~~l~ea~~lL~qmelE~r~l~~~~--~~~~---r~~~~~r~~~~~~eL~~~~~l~k~~~~ 104 (295)
..+.++...-..++.-|+.|+..+...+... ++.. +.+++.=.+.++..+..|......|+.
T Consensus 52 ~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~ 118 (124)
T d1ez3a_ 52 ELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRE 118 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777778888876665444322 2322 233444444455555556656555544
No 7
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia coli [TaxId: 562]}
Probab=30.27 E-value=13 Score=27.30 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=0.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 022587 8 SPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEM 62 (295)
Q Consensus 8 s~~~e~ye~e~~~l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~l~ea~~lL~qm 62 (295)
...++.+..++.....++.+....+.....+..+.....++.....+.......+
T Consensus 29 ~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 83 (143)
T d1u2ma_ 29 ENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAF 83 (143)
T ss_dssp C------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655555443344444444455544444444433333
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=27.86 E-value=32 Score=23.92 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 022587 216 CIMLFLFLIVCGVIAIIVVKVLTHI 240 (295)
Q Consensus 216 ~il~~iilili~iI~iii~~~~~~~ 240 (295)
.++++++++++++.++++|..+++.
T Consensus 31 ~v~~i~~~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 31 FILVIIAAITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444444444444444444444433
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=25.96 E-value=41 Score=21.34 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=18.7
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 022587 210 QVATDKCIMLFLFLIVCGVIAIIVVKVL 237 (295)
Q Consensus 210 r~~tdK~il~~iilili~iI~iii~~~~ 237 (295)
..+..-+..+++.++++++|+++|+-+.
T Consensus 21 ~Ef~~ia~v~~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 21 DEYLAVAKVTALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556667778888888888663
No 10
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=21.39 E-value=2.3e+02 Score=23.98 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhhhccCChhHHHHHHHHHHHH
Q 022587 21 NFRALSNGFQKLDKIKDSNRQTKQLEELTGR 51 (295)
Q Consensus 21 l~~~l~~~~~kl~~~~~~~~r~~~l~~le~~ 51 (295)
-+.+|.+.+..|..+.+.+.++..+.+++..
T Consensus 7 ~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~ 37 (362)
T d1gqea_ 7 RIQDLTERSDVLRGYLDYDAKKERLEEVNAE 37 (362)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3444455555555544545555555544443
No 11
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.21 E-value=49 Score=21.50 Aligned_cols=26 Identities=12% Similarity=0.460 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch
Q 022587 43 KQLEELTGRMRECKRLIKEMDREIKD 68 (295)
Q Consensus 43 ~~l~~le~~l~ea~~lL~qmelE~r~ 68 (295)
..+.+++..|+.|+..|+.++.|+..
T Consensus 26 ~sV~diE~eLerCk~~irrLeqel~~ 51 (67)
T d1k1fa_ 26 RSVGDIEQELERAKASIRRLEQEVNQ 51 (67)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999987775
Done!