Query 022590
Match_columns 294
No_of_seqs 673 out of 1087
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 04:42:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.7E-51 7.9E-56 294.7 22.7 256 3-293 110-440 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 8E-49 1.7E-53 285.6 17.7 247 1-290 210-458 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.2E-48 6.9E-53 282.5 19.0 243 6-293 173-419 (459)
4 KOG0271 Notchless-like WD40 re 100.0 4.2E-47 9E-52 273.8 21.8 266 2-290 151-479 (480)
5 KOG0279 G protein beta subunit 100.0 4.8E-44 1E-48 247.7 25.5 248 3-292 58-313 (315)
6 KOG0279 G protein beta subunit 100.0 1.1E-43 2.4E-48 245.9 26.6 244 3-293 10-263 (315)
7 KOG0286 G-protein beta subunit 100.0 3.8E-43 8.3E-48 244.8 27.2 247 3-291 50-302 (343)
8 KOG0263 Transcription initiati 100.0 2.4E-44 5.1E-49 281.1 21.9 240 8-293 378-650 (707)
9 KOG0273 Beta-transducin family 100.0 3.5E-42 7.7E-47 254.4 25.4 240 8-293 235-483 (524)
10 KOG0286 G-protein beta subunit 100.0 2.1E-41 4.6E-46 236.2 25.2 238 9-290 98-343 (343)
11 KOG0284 Polyadenylation factor 100.0 3E-43 6.5E-48 255.7 15.2 244 4-292 134-380 (464)
12 KOG0316 Conserved WD40 repeat- 100.0 9E-42 1.9E-46 231.3 20.8 245 3-293 12-258 (307)
13 KOG0315 G-protein beta subunit 100.0 5.6E-41 1.2E-45 229.1 24.1 248 6-293 38-289 (311)
14 KOG0285 Pleiotropic regulator 100.0 7.3E-42 1.6E-46 244.9 20.6 242 4-293 147-390 (460)
15 KOG0277 Peroxisomal targeting 100.0 3.8E-41 8.3E-46 230.5 19.2 246 6-291 58-308 (311)
16 KOG1034 Transcriptional repres 100.0 2.2E-40 4.8E-45 234.7 22.2 290 3-293 83-384 (385)
17 KOG0295 WD40 repeat-containing 100.0 7.6E-41 1.7E-45 239.8 19.7 246 4-293 104-365 (406)
18 KOG0281 Beta-TrCP (transducin 100.0 4.6E-42 1E-46 245.5 13.0 235 6-293 195-429 (499)
19 KOG0263 Transcription initiati 100.0 1.1E-40 2.3E-45 260.7 21.1 203 4-248 447-651 (707)
20 KOG0282 mRNA splicing factor [ 100.0 7.1E-41 1.5E-45 248.2 15.9 251 3-290 209-503 (503)
21 KOG0645 WD40 repeat protein [G 100.0 1.2E-38 2.5E-43 220.2 25.4 246 5-292 58-311 (312)
22 KOG0284 Polyadenylation factor 100.0 8.8E-41 1.9E-45 242.9 14.8 241 6-292 94-337 (464)
23 KOG0265 U5 snRNP-specific prot 100.0 6.4E-39 1.4E-43 224.5 22.7 248 4-293 43-297 (338)
24 KOG0276 Vesicle coat complex C 100.0 4.1E-39 8.9E-44 246.3 22.7 246 5-293 10-258 (794)
25 KOG0266 WD40 repeat-containing 100.0 2.9E-38 6.3E-43 251.3 28.7 246 7-293 158-410 (456)
26 KOG0283 WD40 repeat-containing 100.0 5.4E-39 1.2E-43 253.1 22.1 250 6-292 265-576 (712)
27 KOG0281 Beta-TrCP (transducin 100.0 3.7E-40 7.9E-45 235.8 13.9 239 3-292 232-477 (499)
28 PLN00181 protein SPA1-RELATED; 100.0 3.2E-37 7E-42 262.3 33.4 251 8-291 532-792 (793)
29 KOG0318 WD40 repeat stress pro 100.0 3.4E-37 7.4E-42 231.1 29.3 273 4-293 186-561 (603)
30 KOG0273 Beta-transducin family 100.0 7.2E-38 1.6E-42 231.7 24.9 242 3-292 271-523 (524)
31 KOG0645 WD40 repeat protein [G 100.0 6.4E-37 1.4E-41 211.6 27.9 244 3-292 9-261 (312)
32 KOG0295 WD40 repeat-containing 100.0 2.4E-38 5.2E-43 227.1 21.7 244 3-292 145-406 (406)
33 KOG0315 G-protein beta subunit 100.0 9E-38 1.9E-42 213.5 23.1 230 24-293 11-246 (311)
34 KOG0292 Vesicle coat complex C 100.0 2.1E-38 4.4E-43 251.3 22.8 255 4-293 5-281 (1202)
35 KOG0643 Translation initiation 100.0 1E-37 2.2E-42 215.3 22.9 256 3-293 5-318 (327)
36 KOG0266 WD40 repeat-containing 100.0 1.2E-37 2.5E-42 247.9 26.9 246 4-293 199-455 (456)
37 KOG0296 Angio-associated migra 100.0 7.7E-37 1.7E-41 219.4 27.0 253 2-292 58-398 (399)
38 KOG0291 WD40-repeat-containing 100.0 3.5E-37 7.5E-42 240.3 26.3 248 5-293 347-613 (893)
39 cd00200 WD40 WD40 domain, foun 100.0 4E-36 8.8E-41 228.5 30.8 245 3-293 4-250 (289)
40 KOG0265 U5 snRNP-specific prot 100.0 3.5E-37 7.6E-42 215.9 22.4 247 3-291 85-337 (338)
41 KOG0293 WD40 repeat-containing 100.0 8E-38 1.7E-42 228.2 19.8 270 3-293 219-514 (519)
42 PLN00181 protein SPA1-RELATED; 100.0 6.8E-36 1.5E-40 254.3 33.3 243 6-292 481-738 (793)
43 KOG0318 WD40 repeat stress pro 100.0 6.4E-36 1.4E-40 224.3 29.0 281 4-293 143-518 (603)
44 KOG0291 WD40-repeat-containing 100.0 2.6E-36 5.6E-41 235.5 27.0 241 7-293 306-551 (893)
45 KOG0264 Nucleosome remodeling 100.0 2.7E-37 5.8E-42 227.6 19.9 255 6-292 122-404 (422)
46 KOG0292 Vesicle coat complex C 100.0 1.4E-36 3E-41 241.1 25.1 267 4-292 47-321 (1202)
47 KOG0276 Vesicle coat complex C 100.0 4.8E-37 1E-41 235.0 21.1 240 4-288 51-295 (794)
48 KOG0278 Serine/threonine kinas 100.0 6.5E-38 1.4E-42 214.5 13.4 254 5-293 11-298 (334)
49 KOG0319 WD40-repeat-containing 100.0 1.3E-36 2.9E-41 236.3 21.8 246 4-291 361-618 (775)
50 cd00200 WD40 WD40 domain, foun 100.0 4.9E-35 1.1E-39 222.6 29.4 241 4-290 47-289 (289)
51 KOG0310 Conserved WD40 repeat- 100.0 6E-36 1.3E-40 222.3 23.0 237 8-289 68-306 (487)
52 KOG0305 Anaphase promoting com 100.0 1E-35 2.2E-40 228.5 23.4 240 7-293 216-462 (484)
53 KOG0313 Microtubule binding pr 100.0 4.5E-36 9.8E-41 216.6 19.3 269 6-294 103-378 (423)
54 KOG1446 Histone H3 (Lys4) meth 100.0 4.3E-34 9.2E-39 201.9 28.6 247 6-293 12-263 (311)
55 PTZ00421 coronin; Provisional 100.0 3.2E-34 6.9E-39 227.5 30.5 244 9-293 21-291 (493)
56 KOG0285 Pleiotropic regulator 100.0 4.1E-35 8.8E-40 210.5 22.6 245 4-292 189-439 (460)
57 PTZ00421 coronin; Provisional 100.0 5.4E-34 1.2E-38 226.2 29.2 227 4-273 71-314 (493)
58 PTZ00420 coronin; Provisional 100.0 1.1E-33 2.4E-38 225.6 30.9 225 29-293 50-294 (568)
59 KOG0277 Peroxisomal targeting 100.0 4.9E-35 1.1E-39 200.7 19.4 246 8-292 8-265 (311)
60 KOG0274 Cdc4 and related F-box 100.0 1.6E-34 3.5E-39 229.5 24.4 238 4-293 245-483 (537)
61 KOG0319 WD40-repeat-containing 100.0 4.9E-34 1.1E-38 222.1 23.3 255 6-293 321-578 (775)
62 KOG0299 U3 snoRNP-associated p 100.0 6.3E-34 1.4E-38 210.2 22.5 246 4-293 138-411 (479)
63 PTZ00420 coronin; Provisional 100.0 4.9E-33 1.1E-37 221.9 29.4 228 3-274 69-318 (568)
64 KOG1407 WD40 repeat protein [F 100.0 1.5E-33 3.2E-38 194.2 22.5 265 5-293 17-312 (313)
65 KOG0313 Microtubule binding pr 100.0 3.3E-33 7.1E-38 201.9 24.8 248 5-293 141-419 (423)
66 KOG0275 Conserved WD40 repeat- 100.0 2.5E-34 5.5E-39 204.5 17.2 245 6-293 211-468 (508)
67 KOG0294 WD40 repeat-containing 100.0 3.2E-33 7E-38 197.4 22.5 238 4-293 39-282 (362)
68 KOG0647 mRNA export protein (c 100.0 4.1E-33 8.8E-38 195.8 22.9 244 6-292 25-281 (347)
69 KOG0288 WD40 repeat protein Ti 100.0 6.7E-35 1.5E-39 212.7 14.4 248 3-294 170-419 (459)
70 KOG1036 Mitotic spindle checkp 100.0 2.7E-33 5.9E-38 197.1 21.7 244 6-293 11-263 (323)
71 KOG0310 Conserved WD40 repeat- 100.0 1.5E-33 3.2E-38 209.8 21.4 241 7-292 25-268 (487)
72 KOG0640 mRNA cleavage stimulat 100.0 9.3E-34 2E-38 200.1 18.1 254 2-292 106-426 (430)
73 KOG1332 Vesicle coat complex C 100.0 9.8E-34 2.1E-38 193.3 16.6 255 6-292 9-286 (299)
74 KOG0289 mRNA splicing factor [ 100.0 1.5E-32 3.3E-37 201.8 23.9 248 2-291 255-505 (506)
75 KOG0299 U3 snoRNP-associated p 100.0 3.4E-33 7.3E-38 206.4 20.1 247 6-289 200-453 (479)
76 KOG0274 Cdc4 and related F-box 100.0 5.3E-33 1.1E-37 221.0 22.7 235 7-293 207-442 (537)
77 KOG0268 Sof1-like rRNA process 100.0 5.1E-34 1.1E-38 205.1 14.8 250 1-292 59-345 (433)
78 KOG0288 WD40 repeat protein Ti 100.0 2.3E-33 5.1E-38 204.7 17.8 239 4-290 215-459 (459)
79 KOG0973 Histone transcription 100.0 3.4E-32 7.4E-37 220.4 24.8 256 4-293 9-356 (942)
80 KOG0308 Conserved WD40 repeat- 100.0 6.6E-33 1.4E-37 213.2 18.2 253 6-293 19-286 (735)
81 KOG0641 WD40 repeat protein [G 100.0 8.8E-31 1.9E-35 177.5 25.2 253 5-292 86-349 (350)
82 KOG0306 WD40-repeat-containing 100.0 1.3E-31 2.9E-36 209.3 23.3 233 20-293 422-665 (888)
83 KOG0302 Ribosome Assembly prot 100.0 1.3E-31 2.8E-36 193.7 20.3 254 6-290 149-436 (440)
84 KOG0300 WD40 repeat-containing 100.0 7.5E-32 1.6E-36 191.4 18.4 249 5-294 187-478 (481)
85 KOG0316 Conserved WD40 repeat- 100.0 1.6E-31 3.5E-36 181.7 18.8 204 45-293 9-214 (307)
86 KOG0289 mRNA splicing factor [ 100.0 5.7E-31 1.2E-35 193.6 22.8 239 9-290 220-460 (506)
87 KOG0264 Nucleosome remodeling 100.0 7.2E-32 1.6E-36 199.1 17.8 217 3-247 172-405 (422)
88 KOG0269 WD40 repeat-containing 100.0 1.7E-32 3.7E-37 214.7 15.2 240 10-288 89-336 (839)
89 KOG2445 Nuclear pore complex c 100.0 2.9E-30 6.2E-35 182.1 24.4 264 6-291 11-317 (361)
90 KOG0282 mRNA splicing factor [ 100.0 1.9E-32 4.1E-37 203.7 12.6 212 44-294 205-464 (503)
91 KOG0275 Conserved WD40 repeat- 100.0 5.1E-32 1.1E-36 192.8 13.8 240 6-290 261-507 (508)
92 KOG0772 Uncharacterized conser 100.0 1.1E-30 2.4E-35 196.2 21.0 262 4-293 163-446 (641)
93 KOG0300 WD40 repeat-containing 100.0 1.5E-30 3.3E-35 184.8 18.2 243 4-292 144-428 (481)
94 KOG0270 WD40 repeat-containing 100.0 2.2E-30 4.8E-35 190.9 19.6 235 21-293 191-450 (463)
95 KOG0641 WD40 repeat protein [G 100.0 7.5E-29 1.6E-33 168.2 24.0 247 8-292 32-303 (350)
96 KOG0646 WD40 repeat protein [G 100.0 8E-30 1.7E-34 189.0 20.8 232 31-293 59-308 (476)
97 KOG0321 WD40 repeat-containing 100.0 3.6E-30 7.8E-35 197.9 19.5 273 12-293 53-348 (720)
98 KOG0296 Angio-associated migra 100.0 4.4E-29 9.6E-34 179.8 22.8 225 3-246 101-398 (399)
99 KOG0301 Phospholipase A2-activ 100.0 1.9E-29 4.2E-34 195.5 21.9 233 5-292 54-288 (745)
100 KOG0308 Conserved WD40 repeat- 100.0 3E-30 6.5E-35 198.7 16.9 248 3-293 68-328 (735)
101 KOG0269 WD40 repeat-containing 100.0 2.1E-30 4.6E-35 203.2 16.3 242 9-293 40-297 (839)
102 KOG1274 WD40 repeat protein [G 100.0 9.8E-29 2.1E-33 197.3 25.6 249 6-292 11-262 (933)
103 KOG0772 Uncharacterized conser 100.0 1.8E-29 4E-34 189.7 19.8 245 7-289 213-484 (641)
104 KOG0306 WD40-repeat-containing 100.0 7.8E-29 1.7E-33 194.0 23.4 250 6-292 371-622 (888)
105 KOG4283 Transcription-coupled 100.0 4E-29 8.6E-34 175.6 18.9 214 5-249 40-279 (397)
106 KOG0640 mRNA cleavage stimulat 100.0 5.5E-30 1.2E-34 181.2 14.3 214 47-293 106-336 (430)
107 KOG0321 WD40 repeat-containing 100.0 4.9E-29 1.1E-33 191.7 20.5 257 6-293 98-392 (720)
108 KOG0283 WD40 repeat-containing 100.0 2.2E-29 4.8E-34 199.2 17.8 210 1-246 362-576 (712)
109 KOG0643 Translation initiation 100.0 4.3E-28 9.3E-33 168.0 21.6 210 48-293 5-221 (327)
110 KOG0301 Phospholipase A2-activ 100.0 7.7E-29 1.7E-33 192.2 20.0 238 2-292 8-249 (745)
111 KOG2096 WD40 repeat protein [G 100.0 4E-28 8.6E-33 172.4 21.9 255 3-290 81-400 (420)
112 KOG0267 Microtubule severing p 100.0 2.3E-30 5E-35 201.6 10.4 233 6-284 26-260 (825)
113 KOG0305 Anaphase promoting com 100.0 4.4E-28 9.4E-33 186.7 22.3 232 13-292 182-419 (484)
114 KOG1273 WD40 repeat protein [G 100.0 6.4E-28 1.4E-32 171.0 21.1 243 11-292 26-280 (405)
115 KOG0646 WD40 repeat protein [G 100.0 4.2E-28 9.1E-33 180.0 20.9 230 8-274 81-331 (476)
116 KOG0973 Histone transcription 100.0 1.2E-28 2.7E-33 200.0 19.6 230 1-248 62-357 (942)
117 KOG1446 Histone H3 (Lys4) meth 100.0 5.9E-27 1.3E-31 166.0 25.1 239 6-291 54-302 (311)
118 KOG0270 WD40 repeat-containing 100.0 9.6E-29 2.1E-33 182.3 16.3 209 6-250 241-453 (463)
119 KOG0278 Serine/threonine kinas 100.0 4.4E-28 9.6E-33 166.5 16.0 200 6-250 98-301 (334)
120 KOG1332 Vesicle coat complex C 100.0 8.1E-28 1.8E-32 164.6 16.8 217 2-248 50-288 (299)
121 KOG1408 WD40 repeat protein [F 100.0 7.6E-28 1.6E-32 188.1 18.6 250 7-292 458-713 (1080)
122 KOG1407 WD40 repeat protein [F 100.0 7.5E-28 1.6E-32 166.2 16.5 215 47-292 14-261 (313)
123 KOG4283 Transcription-coupled 100.0 1.8E-27 4E-32 167.3 18.3 210 49-293 39-277 (397)
124 KOG0302 Ribosome Assembly prot 100.0 8.4E-28 1.8E-32 174.1 16.6 215 2-243 205-435 (440)
125 KOG0293 WD40 repeat-containing 100.0 5.5E-28 1.2E-32 177.1 15.4 228 3-248 264-515 (519)
126 KOG1036 Mitotic spindle checkp 100.0 9.7E-27 2.1E-31 164.3 20.9 232 6-282 52-294 (323)
127 KOG1539 WD repeat protein [Gen 100.0 2.2E-26 4.7E-31 182.3 23.3 274 8-291 244-647 (910)
128 KOG0647 mRNA export protein (c 100.0 4.3E-26 9.4E-31 160.7 22.1 236 5-280 69-311 (347)
129 KOG0294 WD40 repeat-containing 100.0 1.7E-26 3.7E-31 163.7 19.9 227 4-271 79-306 (362)
130 KOG4328 WD40 protein [Function 100.0 8.8E-27 1.9E-31 172.7 18.8 254 5-292 183-450 (498)
131 KOG0639 Transducin-like enhanc 100.0 6.6E-27 1.4E-31 175.8 18.1 236 7-291 464-703 (705)
132 KOG0307 Vesicle coat complex C 100.0 1E-27 2.3E-32 195.7 14.0 248 7-293 63-328 (1049)
133 KOG2106 Uncharacterized conser 100.0 2.8E-25 6.1E-30 167.0 25.5 235 8-290 246-519 (626)
134 KOG0268 Sof1-like rRNA process 100.0 1.4E-27 3E-32 172.2 11.8 226 46-292 59-302 (433)
135 KOG2048 WD40 repeat protein [G 100.0 2.6E-25 5.7E-30 172.4 24.7 251 4-293 21-276 (691)
136 KOG1539 WD repeat protein [Gen 100.0 4.4E-25 9.6E-30 175.0 26.4 278 2-293 196-607 (910)
137 KOG0267 Microtubule severing p 99.9 5.4E-28 1.2E-32 188.5 9.0 220 25-293 6-227 (825)
138 KOG1408 WD40 repeat protein [F 99.9 1.9E-25 4.2E-30 174.8 23.1 244 13-293 327-672 (1080)
139 KOG4328 WD40 protein [Function 99.9 1.9E-26 4.2E-31 170.9 16.0 221 39-292 172-399 (498)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.6E-24 1E-28 163.6 29.5 236 10-293 32-280 (300)
141 KOG2048 WD40 repeat protein [G 99.9 1.1E-24 2.3E-29 169.1 25.0 249 6-290 67-317 (691)
142 KOG0639 Transducin-like enhanc 99.9 8E-26 1.7E-30 170.0 15.7 239 6-291 417-662 (705)
143 KOG0650 WD40 repeat nucleolar 99.9 2.7E-25 5.9E-30 170.3 18.3 265 5-289 397-732 (733)
144 KOG2106 Uncharacterized conser 99.9 1.2E-23 2.7E-28 158.2 26.1 257 6-293 152-478 (626)
145 KOG2096 WD40 repeat protein [G 99.9 9.4E-25 2E-29 155.4 19.1 221 47-292 80-308 (420)
146 KOG1009 Chromatin assembly com 99.9 2.1E-24 4.5E-29 158.0 20.9 255 8-292 13-372 (434)
147 KOG0290 Conserved WD40 repeat- 99.9 2.2E-24 4.7E-29 151.6 19.9 254 8-293 44-319 (364)
148 KOG0303 Actin-binding protein 99.9 1.3E-24 2.9E-29 158.6 19.3 231 4-273 77-320 (472)
149 KOG4378 Nuclear protein COP1 [ 99.9 5.4E-25 1.2E-29 165.3 17.2 209 25-274 93-305 (673)
150 KOG1063 RNA polymerase II elon 99.9 6.8E-25 1.5E-29 170.6 18.1 272 5-293 264-649 (764)
151 KOG1188 WD40 repeat protein [G 99.9 2.9E-25 6.2E-30 159.1 14.6 247 25-291 42-345 (376)
152 KOG2055 WD40 repeat protein [G 99.9 3E-24 6.4E-29 159.7 20.2 246 8-292 257-512 (514)
153 KOG1034 Transcriptional repres 99.9 1.2E-24 2.6E-29 155.2 16.9 259 5-293 35-338 (385)
154 KOG1274 WD40 repeat protein [G 99.9 1.3E-23 2.8E-28 168.3 23.6 241 7-289 55-297 (933)
155 KOG0290 Conserved WD40 repeat- 99.9 7.1E-24 1.5E-28 149.0 19.4 247 6-288 94-361 (364)
156 KOG1445 Tumor-specific antigen 99.9 1.1E-24 2.4E-29 168.6 16.8 122 3-131 74-201 (1012)
157 KOG0322 G-protein beta subunit 99.9 2.1E-24 4.6E-29 149.6 16.4 259 3-291 9-322 (323)
158 KOG4378 Nuclear protein COP1 [ 99.9 2.8E-24 6.2E-29 161.5 17.3 240 10-293 36-281 (673)
159 KOG1587 Cytoplasmic dynein int 99.9 3E-23 6.6E-28 164.5 22.9 257 7-293 241-517 (555)
160 KOG1007 WD repeat protein TSSC 99.9 6.3E-23 1.4E-27 144.2 20.6 251 5-291 60-360 (370)
161 KOG1063 RNA polymerase II elon 99.9 4.6E-23 9.9E-28 160.6 22.0 281 2-290 48-389 (764)
162 KOG0307 Vesicle coat complex C 99.9 1.1E-24 2.5E-29 178.2 13.7 210 3-249 111-330 (1049)
163 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.8E-22 1.3E-26 152.0 28.1 226 25-293 3-238 (300)
164 KOG0303 Actin-binding protein 99.9 1.9E-23 4.1E-28 152.6 18.6 207 47-294 75-296 (472)
165 KOG1007 WD repeat protein TSSC 99.9 2.2E-23 4.7E-28 146.5 17.2 216 2-247 116-362 (370)
166 KOG2445 Nuclear pore complex c 99.9 1.4E-22 3.1E-27 143.5 21.2 222 50-293 10-257 (361)
167 KOG4227 WD40 repeat protein [G 99.9 3.1E-23 6.8E-28 151.9 18.3 256 6-290 54-385 (609)
168 KOG2919 Guanine nucleotide-bin 99.9 8.5E-23 1.8E-27 145.7 19.7 248 12-293 53-328 (406)
169 KOG0642 Cell-cycle nuclear pro 99.9 3E-24 6.5E-29 163.3 12.6 250 5-292 291-561 (577)
170 KOG2919 Guanine nucleotide-bin 99.9 7.3E-23 1.6E-27 146.0 18.5 241 6-283 102-361 (406)
171 KOG1538 Uncharacterized conser 99.9 3.8E-22 8.2E-27 155.6 22.9 237 8-292 12-293 (1081)
172 KOG0644 Uncharacterized conser 99.9 3.4E-24 7.3E-29 170.3 11.3 255 4-291 186-467 (1113)
173 KOG1445 Tumor-specific antigen 99.9 7.2E-23 1.6E-27 158.7 17.5 165 99-292 627-798 (1012)
174 KOG2055 WD40 repeat protein [G 99.9 2.2E-22 4.7E-27 149.9 18.8 240 8-290 213-465 (514)
175 KOG1273 WD40 repeat protein [G 99.9 4.2E-22 9.1E-27 141.8 19.4 255 4-292 61-322 (405)
176 KOG0649 WD40 repeat protein [G 99.9 1.7E-21 3.7E-26 133.9 18.0 239 10-292 12-274 (325)
177 KOG2110 Uncharacterized conser 99.9 2E-19 4.4E-24 130.7 26.3 240 6-293 3-249 (391)
178 COG2319 FOG: WD40 repeat [Gene 99.9 2.4E-19 5.2E-24 144.3 30.2 244 4-293 61-315 (466)
179 KOG1310 WD40 repeat protein [G 99.9 2.5E-21 5.4E-26 147.7 14.5 231 45-293 42-304 (758)
180 KOG1517 Guanine nucleotide bin 99.9 2.4E-20 5.2E-25 152.3 20.8 255 8-293 1109-1382(1387)
181 KOG1188 WD40 repeat protein [G 99.9 1.5E-20 3.2E-25 135.2 16.2 194 67-293 41-243 (376)
182 COG2319 FOG: WD40 repeat [Gene 99.9 2.4E-18 5.1E-23 138.6 30.4 244 9-293 110-360 (466)
183 KOG1587 Cytoplasmic dynein int 99.9 9.3E-20 2E-24 144.9 21.3 241 33-292 222-472 (555)
184 KOG1310 WD40 repeat protein [G 99.9 9.5E-21 2.1E-25 144.5 15.0 232 4-256 46-313 (758)
185 KOG1963 WD40 repeat protein [G 99.9 3.9E-19 8.4E-24 142.5 24.6 273 6-293 203-539 (792)
186 KOG1517 Guanine nucleotide bin 99.9 2.6E-19 5.5E-24 146.5 23.4 247 12-292 1068-1333(1387)
187 KOG1524 WD40 repeat-containing 99.9 2E-20 4.3E-25 142.4 15.8 204 25-288 77-282 (737)
188 KOG0650 WD40 repeat nucleolar 99.9 7.2E-20 1.6E-24 141.0 18.9 225 47-292 394-637 (733)
189 KOG1334 WD40 repeat protein [G 99.9 6.6E-21 1.4E-25 143.1 12.7 260 3-291 137-465 (559)
190 KOG0771 Prolactin regulatory e 99.9 8.1E-20 1.8E-24 134.8 16.4 207 12-292 148-354 (398)
191 KOG3881 Uncharacterized conser 99.8 6.1E-19 1.3E-23 129.1 19.7 253 6-293 53-321 (412)
192 KOG1523 Actin-related protein 99.8 9.6E-19 2.1E-23 125.0 19.4 236 7-274 9-261 (361)
193 PRK11028 6-phosphogluconolacto 99.8 2.5E-17 5.5E-22 127.6 27.4 252 9-292 35-304 (330)
194 KOG1963 WD40 repeat protein [G 99.8 5.9E-18 1.3E-22 135.8 23.6 256 18-291 24-321 (792)
195 KOG0649 WD40 repeat protein [G 99.8 1E-17 2.3E-22 115.5 21.5 242 4-289 58-313 (325)
196 KOG2111 Uncharacterized conser 99.8 5.9E-17 1.3E-21 115.9 24.3 238 10-293 7-257 (346)
197 KOG1240 Protein kinase contain 99.8 1.3E-17 2.8E-22 138.5 23.7 258 3-293 1043-1335(1431)
198 KOG1009 Chromatin assembly com 99.8 1.9E-18 4.1E-23 127.1 16.7 228 3-249 60-375 (434)
199 KOG2110 Uncharacterized conser 99.8 2.5E-16 5.3E-21 114.9 27.3 228 25-293 58-331 (391)
200 KOG1523 Actin-related protein 99.8 5.3E-18 1.1E-22 121.3 17.4 215 49-292 6-236 (361)
201 KOG0642 Cell-cycle nuclear pro 99.8 1.8E-18 3.9E-23 132.3 14.5 216 2-250 338-565 (577)
202 KOG1538 Uncharacterized conser 99.8 2E-17 4.3E-22 129.7 20.3 206 1-247 46-294 (1081)
203 KOG0644 Uncharacterized conser 99.8 7E-20 1.5E-24 146.2 6.9 214 44-292 181-426 (1113)
204 KOG1524 WD40 repeat-containing 99.8 2.5E-18 5.3E-23 131.2 14.8 184 4-243 100-283 (737)
205 PRK11028 6-phosphogluconolacto 99.8 1.4E-15 3E-20 117.9 28.3 239 25-293 4-259 (330)
206 KOG1272 WD40-repeat-containing 99.8 1.2E-18 2.6E-23 130.4 10.3 226 12-290 133-360 (545)
207 KOG2139 WD40 repeat protein [G 99.8 2.1E-16 4.6E-21 115.1 20.8 232 9-283 99-366 (445)
208 PRK01742 tolB translocation pr 99.8 1.1E-16 2.4E-21 127.8 20.6 211 32-291 183-400 (429)
209 PRK01742 tolB translocation pr 99.8 1.4E-16 3.1E-21 127.1 20.9 216 5-273 200-426 (429)
210 KOG1272 WD40-repeat-containing 99.8 5.4E-19 1.2E-23 132.3 5.6 228 8-284 170-401 (545)
211 KOG2321 WD40 repeat protein [G 99.8 2.2E-16 4.7E-21 121.6 19.6 246 6-289 49-340 (703)
212 KOG4227 WD40 repeat protein [G 99.8 5.6E-17 1.2E-21 119.5 15.7 211 47-291 50-273 (609)
213 KOG2394 WD40 protein DMR-N9 [G 99.8 2.3E-17 4.9E-22 125.9 13.9 138 8-175 219-384 (636)
214 KOG1240 Protein kinase contain 99.8 1.7E-16 3.7E-21 132.0 20.0 225 38-293 1034-1274(1431)
215 KOG2394 WD40 protein DMR-N9 [G 99.8 1.8E-16 4E-21 121.0 17.8 192 65-271 184-383 (636)
216 KOG4497 Uncharacterized conser 99.8 1.8E-17 3.8E-22 119.3 11.7 222 17-290 15-238 (447)
217 KOG2111 Uncharacterized conser 99.7 1.7E-14 3.6E-19 103.6 25.4 219 33-290 75-320 (346)
218 KOG3881 Uncharacterized conser 99.7 4.3E-16 9.3E-21 114.5 17.3 221 9-273 106-342 (412)
219 KOG2139 WD40 repeat protein [G 99.7 1.2E-14 2.7E-19 106.1 23.1 249 6-291 138-430 (445)
220 KOG0322 G-protein beta subunit 99.7 5.9E-17 1.3E-21 113.0 10.1 160 6-192 148-322 (323)
221 KOG0280 Uncharacterized conser 99.7 7.4E-15 1.6E-19 104.2 18.6 249 9-290 70-331 (339)
222 PRK05137 tolB translocation pr 99.7 1.2E-13 2.5E-18 110.9 26.9 211 33-292 182-412 (435)
223 KOG0771 Prolactin regulatory e 99.7 4E-14 8.6E-19 105.2 20.3 158 103-292 148-311 (398)
224 KOG4497 Uncharacterized conser 99.7 3.1E-14 6.8E-19 102.9 19.2 269 9-292 49-391 (447)
225 PF02239 Cytochrom_D1: Cytochr 99.7 5.2E-13 1.1E-17 103.7 26.6 245 18-293 44-348 (369)
226 PRK04922 tolB translocation pr 99.7 1.2E-13 2.6E-18 110.7 23.8 211 33-292 184-411 (433)
227 KOG1409 Uncharacterized conser 99.7 3E-14 6.5E-19 103.4 17.9 227 3-247 19-271 (404)
228 PRK03629 tolB translocation pr 99.7 4.2E-13 9.1E-18 107.2 26.5 210 34-292 180-406 (429)
229 PRK02889 tolB translocation pr 99.7 1.3E-13 2.7E-18 110.2 23.0 207 33-284 176-392 (427)
230 KOG1354 Serine/threonine prote 99.6 1.1E-14 2.4E-19 105.7 14.3 257 8-292 25-359 (433)
231 PF08662 eIF2A: Eukaryotic tra 99.6 2.3E-14 5E-19 101.3 14.3 113 7-131 58-180 (194)
232 PF02239 Cytochrom_D1: Cytochr 99.6 4.4E-12 9.6E-17 98.6 28.0 194 25-249 8-205 (369)
233 PRK03629 tolB translocation pr 99.6 3.7E-13 8.1E-18 107.5 22.4 214 7-272 197-427 (429)
234 KOG0309 Conserved WD40 repeat- 99.6 1.5E-14 3.3E-19 115.1 12.4 247 10-293 69-340 (1081)
235 PRK04922 tolB translocation pr 99.6 6.1E-13 1.3E-17 106.7 21.4 215 6-272 201-432 (433)
236 TIGR02800 propeller_TolB tol-p 99.6 3.6E-12 7.7E-17 102.4 25.7 203 33-284 170-386 (417)
237 PF08662 eIF2A: Eukaryotic tra 99.6 4.9E-13 1.1E-17 94.5 18.2 147 13-194 10-180 (194)
238 PRK05137 tolB translocation pr 99.6 1.6E-12 3.5E-17 104.4 23.1 215 6-273 199-433 (435)
239 KOG1334 WD40 repeat protein [G 99.6 2.5E-14 5.4E-19 108.3 11.8 215 46-290 135-364 (559)
240 KOG1354 Serine/threonine prote 99.6 1.6E-13 3.6E-18 99.7 15.3 262 6-289 82-431 (433)
241 KOG4547 WD40 repeat-containing 99.6 9.9E-13 2.1E-17 102.0 19.8 190 65-292 4-220 (541)
242 KOG0974 WD-repeat protein WDR6 99.6 1.6E-13 3.5E-18 112.8 16.3 187 21-247 98-289 (967)
243 PF10282 Lactonase: Lactonase, 99.6 2.8E-10 6E-15 88.6 32.1 245 19-292 45-322 (345)
244 PRK02889 tolB translocation pr 99.6 1.8E-12 3.8E-17 103.7 20.3 218 6-273 193-425 (427)
245 KOG1064 RAVE (regulator of V-A 99.6 5.4E-14 1.2E-18 121.7 12.3 190 52-293 2207-2399(2439)
246 KOG4547 WD40 repeat-containing 99.5 7E-12 1.5E-16 97.4 22.2 190 20-247 3-221 (541)
247 KOG0974 WD-repeat protein WDR6 99.5 1.1E-12 2.3E-17 108.2 17.3 194 54-292 88-288 (967)
248 KOG0280 Uncharacterized conser 99.5 1.1E-12 2.4E-17 93.4 14.5 118 13-132 124-243 (339)
249 KOG1409 Uncharacterized conser 99.5 2.3E-12 5E-17 93.8 14.9 221 44-292 15-270 (404)
250 KOG2321 WD40 repeat protein [G 99.5 2.2E-12 4.8E-17 100.0 15.6 189 20-248 144-345 (703)
251 PRK00178 tolB translocation pr 99.5 7.2E-11 1.6E-15 95.1 25.0 209 34-291 180-405 (430)
252 KOG4532 WD40-like repeat conta 99.5 3.3E-11 7.1E-16 85.1 19.7 238 25-291 86-330 (344)
253 TIGR02800 propeller_TolB tol-p 99.5 3E-11 6.6E-16 97.1 21.8 194 7-247 188-398 (417)
254 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.7E-09 3.7E-14 82.6 27.8 243 18-293 53-331 (352)
255 PRK04792 tolB translocation pr 99.4 5.4E-10 1.2E-14 89.9 26.3 210 34-291 199-424 (448)
256 KOG1064 RAVE (regulator of V-A 99.4 8.2E-13 1.8E-17 114.7 10.6 217 15-285 2213-2439(2439)
257 PRK04792 tolB translocation pr 99.4 1.2E-10 2.6E-15 93.6 22.1 214 8-272 217-446 (448)
258 KOG2041 WD40 repeat protein [G 99.4 1.1E-11 2.3E-16 99.1 15.4 242 6-284 12-280 (1189)
259 KOG2315 Predicted translation 99.4 8.8E-10 1.9E-14 85.6 24.5 255 13-292 37-390 (566)
260 KOG0309 Conserved WD40 repeat- 99.4 3E-12 6.6E-17 102.3 11.3 226 8-274 24-257 (1081)
261 PRK00178 tolB translocation pr 99.4 3.8E-10 8.3E-15 90.9 23.5 217 6-273 196-428 (430)
262 PLN02919 haloacid dehalogenase 99.4 4.2E-09 9.1E-14 92.7 30.7 264 13-293 572-889 (1057)
263 KOG1912 WD40 repeat protein [G 99.4 2.2E-10 4.8E-15 92.4 20.7 249 8-293 15-305 (1062)
264 PRK01029 tolB translocation pr 99.4 1.3E-09 2.9E-14 87.0 25.1 219 33-293 165-404 (428)
265 KOG2695 WD40 repeat protein [G 99.4 1.6E-12 3.6E-17 94.7 7.8 155 14-197 217-380 (425)
266 KOG1912 WD40 repeat protein [G 99.4 1.1E-10 2.4E-15 94.2 17.8 232 2-248 49-306 (1062)
267 KOG2314 Translation initiation 99.4 7.7E-10 1.7E-14 86.0 21.7 259 12-292 214-525 (698)
268 PRK01029 tolB translocation pr 99.4 1.2E-09 2.5E-14 87.3 23.8 221 9-274 185-426 (428)
269 COG5170 CDC55 Serine/threonine 99.4 8.1E-11 1.7E-15 85.0 14.5 232 53-293 26-310 (460)
270 COG2706 3-carboxymuconate cycl 99.4 9.6E-09 2.1E-13 76.0 25.4 255 6-293 37-322 (346)
271 KOG2695 WD40 repeat protein [G 99.3 7.9E-12 1.7E-16 91.2 8.8 182 60-272 218-402 (425)
272 COG5170 CDC55 Serine/threonine 99.3 7E-11 1.5E-15 85.4 13.2 257 6-291 24-366 (460)
273 COG4946 Uncharacterized protei 99.3 1.2E-08 2.6E-13 78.2 25.1 119 6-133 357-480 (668)
274 PF15492 Nbas_N: Neuroblastoma 99.3 1.8E-08 4E-13 72.4 24.6 231 19-292 6-259 (282)
275 KOG2066 Vacuolar assembly/sort 99.3 2.3E-10 5E-15 92.5 16.8 191 9-247 40-234 (846)
276 KOG3914 WD repeat protein WDR4 99.3 9.7E-11 2.1E-15 87.2 13.6 150 19-198 71-228 (390)
277 KOG0882 Cyclophilin-related pe 99.3 1.3E-10 2.7E-15 88.0 14.3 255 6-293 7-306 (558)
278 KOG1275 PAB-dependent poly(A) 99.3 1E-10 2.2E-15 95.9 14.4 187 65-291 146-341 (1118)
279 KOG4190 Uncharacterized conser 99.3 8.3E-12 1.8E-16 97.0 7.4 262 2-288 729-1032(1034)
280 KOG4714 Nucleoporin [Nuclear s 99.3 2E-11 4.2E-16 85.8 8.3 136 54-191 180-316 (319)
281 KOG2041 WD40 repeat protein [G 99.3 1.2E-09 2.5E-14 87.8 18.4 251 3-294 66-339 (1189)
282 KOG4532 WD40-like repeat conta 99.3 4.7E-09 1E-13 74.5 18.6 221 30-293 49-283 (344)
283 TIGR03300 assembly_YfgL outer 99.2 2.1E-08 4.5E-13 79.6 24.2 234 22-293 65-298 (377)
284 KOG4714 Nucleoporin [Nuclear s 99.2 2.2E-10 4.7E-15 80.7 11.1 201 56-293 39-255 (319)
285 PF15492 Nbas_N: Neuroblastoma 99.2 1.5E-08 3.3E-13 72.7 20.6 189 11-249 46-262 (282)
286 PF10282 Lactonase: Lactonase, 99.2 2E-07 4.4E-12 72.8 28.9 208 18-248 94-324 (345)
287 TIGR03300 assembly_YfgL outer 99.2 3.5E-08 7.6E-13 78.3 24.1 229 21-293 104-339 (377)
288 PF04762 IKI3: IKI3 family; I 99.2 3.9E-08 8.3E-13 85.3 25.7 261 9-292 22-333 (928)
289 COG2706 3-carboxymuconate cycl 99.2 3.4E-07 7.4E-12 68.0 27.4 242 32-293 15-275 (346)
290 PLN02919 haloacid dehalogenase 99.2 6.3E-08 1.4E-12 85.5 27.0 229 11-250 626-892 (1057)
291 PF13360 PQQ_2: PQQ-like domai 99.2 6E-08 1.3E-12 71.8 23.2 216 32-293 2-231 (238)
292 TIGR02658 TTQ_MADH_Hv methylam 99.2 2.4E-07 5.3E-12 71.0 25.7 225 33-293 27-288 (352)
293 KOG1008 Uncharacterized conser 99.2 2.4E-11 5.1E-16 95.8 4.2 209 9-247 57-276 (783)
294 PF04762 IKI3: IKI3 family; I 99.2 1.7E-07 3.6E-12 81.5 27.5 244 7-291 74-378 (928)
295 KOG0882 Cyclophilin-related pe 99.2 9.3E-10 2E-14 83.5 12.0 210 51-293 7-232 (558)
296 KOG1275 PAB-dependent poly(A) 99.2 2.8E-09 6.1E-14 87.7 15.5 180 25-244 149-340 (1118)
297 KOG4190 Uncharacterized conser 99.2 1.8E-10 3.9E-15 89.8 8.4 175 95-293 731-907 (1034)
298 KOG1645 RING-finger-containing 99.1 6.7E-09 1.5E-13 77.8 15.7 95 35-133 175-269 (463)
299 PF00400 WD40: WD domain, G-be 99.1 1.3E-10 2.8E-15 59.2 4.9 39 43-82 1-39 (39)
300 KOG2314 Translation initiation 99.1 4.5E-08 9.7E-13 76.6 17.8 260 11-292 252-573 (698)
301 COG4946 Uncharacterized protei 99.1 2.2E-07 4.9E-12 71.5 20.9 213 19-280 275-506 (668)
302 KOG3914 WD repeat protein WDR4 99.0 1.7E-09 3.6E-14 80.8 9.1 98 32-135 131-228 (390)
303 KOG2315 Predicted translation 99.0 2.2E-07 4.7E-12 72.8 20.8 198 6-248 163-392 (566)
304 COG5354 Uncharacterized protei 99.0 9.2E-08 2E-12 74.0 18.3 239 7-293 31-307 (561)
305 PF00400 WD40: WD domain, G-be 99.0 1.4E-09 3E-14 55.4 5.9 38 87-128 2-39 (39)
306 COG5354 Uncharacterized protei 99.0 5.6E-07 1.2E-11 69.8 19.8 235 10-292 73-348 (561)
307 KOG1645 RING-finger-containing 98.9 1.1E-07 2.3E-12 71.6 14.7 80 5-87 190-269 (463)
308 KOG4649 PQQ (pyrrolo-quinoline 98.9 2.6E-06 5.5E-11 60.9 20.4 69 22-93 63-132 (354)
309 KOG1920 IkappaB kinase complex 98.9 9.5E-07 2.1E-11 75.6 21.5 264 8-292 16-322 (1265)
310 PRK04043 tolB translocation pr 98.9 6.8E-06 1.5E-10 65.7 25.4 208 33-291 169-399 (419)
311 PF08450 SGL: SMP-30/Gluconola 98.9 9.1E-06 2E-10 60.5 28.4 225 13-280 4-243 (246)
312 PF13360 PQQ_2: PQQ-like domai 98.9 2.3E-06 5E-11 63.4 20.8 199 21-251 35-235 (238)
313 PRK04043 tolB translocation pr 98.9 3.7E-06 7.9E-11 67.2 22.8 113 10-131 189-310 (419)
314 PF08596 Lgl_C: Lethal giant l 98.9 7.1E-06 1.5E-10 64.6 23.9 243 10-283 3-327 (395)
315 PF06977 SdiA-regulated: SdiA- 98.9 2.1E-06 4.6E-11 62.8 19.2 220 48-289 16-247 (248)
316 PF11768 DUF3312: Protein of u 98.9 8.6E-07 1.9E-11 70.3 18.0 88 36-131 239-330 (545)
317 KOG2114 Vacuolar assembly/sort 98.9 4.6E-06 9.9E-11 69.1 22.5 197 20-250 33-247 (933)
318 KOG1832 HIV-1 Vpr-binding prot 98.8 4.7E-09 1E-13 86.5 4.4 197 44-293 1092-1292(1516)
319 KOG1920 IkappaB kinase complex 98.8 7.6E-06 1.7E-10 70.4 23.0 243 7-291 67-364 (1265)
320 PRK11138 outer membrane biogen 98.8 1.8E-05 3.8E-10 63.4 23.8 230 25-293 122-354 (394)
321 PF07433 DUF1513: Protein of u 98.8 2.5E-05 5.4E-10 58.3 23.3 242 13-283 9-277 (305)
322 PF11768 DUF3312: Protein of u 98.8 4.5E-05 9.7E-10 61.0 25.4 71 214-292 259-329 (545)
323 PF08450 SGL: SMP-30/Gluconola 98.8 2.7E-05 5.8E-10 58.0 24.3 179 12-227 43-238 (246)
324 KOG2114 Vacuolar assembly/sort 98.8 3E-06 6.5E-11 70.1 18.5 207 55-292 27-243 (933)
325 PRK11138 outer membrane biogen 98.7 1.1E-05 2.4E-10 64.5 20.9 230 25-292 71-312 (394)
326 KOG2066 Vacuolar assembly/sort 98.7 3.6E-06 7.8E-11 69.2 17.4 119 4-133 54-190 (846)
327 KOG1008 Uncharacterized conser 98.7 1.1E-08 2.3E-13 81.4 3.0 208 53-292 56-275 (783)
328 PF14783 BBS2_Mid: Ciliary BBS 98.7 6.2E-06 1.3E-10 51.3 14.4 104 11-125 2-109 (111)
329 KOG1832 HIV-1 Vpr-binding prot 98.7 2.7E-08 5.9E-13 82.2 4.7 117 4-132 1097-1216(1516)
330 KOG3617 WD40 and TPR repeat-co 98.7 8.4E-07 1.8E-11 73.4 12.8 108 14-131 21-132 (1416)
331 KOG3621 WD40 repeat-containing 98.5 6.4E-07 1.4E-11 72.3 9.1 116 167-292 37-154 (726)
332 PF03178 CPSF_A: CPSF A subuni 98.5 0.00022 4.7E-09 55.5 24.5 221 33-288 2-261 (321)
333 PF07433 DUF1513: Protein of u 98.5 8.4E-05 1.8E-09 55.5 18.9 158 18-196 58-250 (305)
334 PF00780 CNH: CNH domain; Int 98.5 0.0002 4.4E-09 54.3 22.3 237 20-293 5-256 (275)
335 PF06977 SdiA-regulated: SdiA- 98.5 0.00017 3.8E-09 52.9 23.0 206 8-243 21-247 (248)
336 PF03178 CPSF_A: CPSF A subuni 98.5 6.7E-05 1.5E-09 58.3 18.7 186 76-293 2-203 (321)
337 KOG3621 WD40 repeat-containing 98.4 1.4E-05 3.1E-10 64.8 14.5 152 9-184 34-189 (726)
338 KOG4640 Anaphase-promoting com 98.4 1.7E-06 3.6E-11 69.2 8.6 94 9-109 21-115 (665)
339 cd00216 PQQ_DH Dehydrogenases 98.3 0.0012 2.6E-08 54.4 23.1 237 25-293 112-425 (488)
340 PF14783 BBS2_Mid: Ciliary BBS 98.3 0.00015 3.3E-09 45.2 13.5 68 56-131 2-72 (111)
341 PF08553 VID27: VID27 cytoplas 98.3 0.0003 6.6E-09 59.9 18.9 148 65-245 492-646 (794)
342 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0011 2.3E-08 53.2 21.3 49 77-131 62-110 (410)
343 KOG3617 WD40 and TPR repeat-co 98.2 3.7E-05 8E-10 64.2 12.4 70 11-84 62-131 (1416)
344 PHA02713 hypothetical protein; 98.2 0.00086 1.9E-08 56.1 19.9 217 34-293 273-534 (557)
345 smart00320 WD40 WD40 repeats. 98.2 4.8E-06 1E-10 41.6 4.5 38 44-82 3-40 (40)
346 PRK02888 nitrous-oxide reducta 98.1 0.0019 4.1E-08 53.4 20.3 179 74-293 213-405 (635)
347 PF04053 Coatomer_WDAD: Coatom 98.1 0.0015 3.2E-08 52.6 19.5 147 66-247 117-263 (443)
348 KOG4441 Proteins containing BT 98.1 0.001 2.2E-08 55.6 19.1 225 25-292 287-546 (571)
349 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0029 6.2E-08 50.8 25.6 218 16-274 34-271 (410)
350 PF08596 Lgl_C: Lethal giant l 98.1 0.0002 4.3E-09 56.7 13.0 159 101-292 3-173 (395)
351 KOG2444 WD40 repeat protein [G 98.0 1E-05 2.2E-10 56.8 5.0 106 175-293 70-178 (238)
352 PF04053 Coatomer_WDAD: Coatom 98.0 0.0026 5.7E-08 51.3 19.0 224 11-292 35-262 (443)
353 smart00320 WD40 WD40 repeats. 98.0 2.6E-05 5.6E-10 38.8 5.2 38 87-128 3-40 (40)
354 KOG4640 Anaphase-promoting com 98.0 8.2E-05 1.8E-09 59.9 9.3 74 53-132 20-94 (665)
355 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0029 6.2E-08 50.0 18.0 234 19-291 1-265 (353)
356 PF08553 VID27: VID27 cytoplas 97.9 0.00055 1.2E-08 58.4 14.2 146 111-291 492-646 (794)
357 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0039 8.4E-08 45.3 20.0 105 20-132 20-125 (354)
358 PRK02888 nitrous-oxide reducta 97.9 0.0019 4.2E-08 53.3 16.1 157 20-194 202-405 (635)
359 PF05096 Glu_cyclase_2: Glutam 97.9 0.004 8.7E-08 45.8 15.7 192 20-235 54-250 (264)
360 KOG2079 Vacuolar assembly/sort 97.8 0.0035 7.6E-08 54.3 17.1 100 25-131 101-204 (1206)
361 COG3204 Uncharacterized protei 97.8 0.0063 1.4E-07 45.1 19.3 212 49-279 81-300 (316)
362 PHA02713 hypothetical protein; 97.8 0.0017 3.7E-08 54.4 15.1 68 172-250 461-537 (557)
363 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.012 2.7E-07 46.8 22.0 91 14-109 5-118 (415)
364 KOG2444 WD40 repeat protein [G 97.8 0.00023 4.9E-09 50.3 7.9 103 25-131 72-178 (238)
365 COG0823 TolB Periplasmic compo 97.8 0.0083 1.8E-07 48.3 17.6 177 34-249 174-361 (425)
366 COG3391 Uncharacterized conser 97.7 0.017 3.7E-07 46.1 24.7 236 20-292 40-283 (381)
367 PF05694 SBP56: 56kDa selenium 97.7 0.0041 8.9E-08 48.9 14.0 219 21-294 86-344 (461)
368 PF12894 Apc4_WD40: Anaphase-p 97.6 0.00036 7.8E-09 36.4 5.2 34 53-88 11-44 (47)
369 PHA03098 kelch-like protein; P 97.6 0.014 3.1E-07 49.0 17.5 103 21-131 294-415 (534)
370 KOG2395 Protein involved in va 97.6 0.0067 1.5E-07 48.6 14.2 142 68-246 348-500 (644)
371 cd00216 PQQ_DH Dehydrogenases 97.6 0.035 7.6E-07 46.0 24.1 214 31-257 173-435 (488)
372 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00051 1.1E-08 35.8 5.2 31 262-292 11-41 (47)
373 PF00780 CNH: CNH domain; Int 97.5 0.024 5.1E-07 43.1 19.8 163 65-254 6-173 (275)
374 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.038 8.2E-07 43.7 20.9 60 9-73 43-119 (353)
375 COG4590 ABC-type uncharacteriz 97.4 0.0019 4.2E-08 50.7 8.8 245 14-293 118-387 (733)
376 PHA03098 kelch-like protein; P 97.4 0.04 8.6E-07 46.4 17.4 189 65-293 294-512 (534)
377 KOG4441 Proteins containing BT 97.3 0.048 1E-06 46.0 17.4 188 65-293 284-500 (571)
378 KOG2079 Vacuolar assembly/sort 97.3 0.0017 3.6E-08 56.2 8.7 111 168-291 92-202 (1206)
379 COG0823 TolB Periplasmic compo 97.3 0.056 1.2E-06 43.7 16.6 118 7-131 191-313 (425)
380 PHA02790 Kelch-like protein; P 97.3 0.077 1.7E-06 43.9 17.7 186 65-293 271-471 (480)
381 PF06433 Me-amine-dh_H: Methyl 97.3 0.054 1.2E-06 41.6 18.5 204 20-250 104-324 (342)
382 COG3391 Uncharacterized conser 97.2 0.08 1.7E-06 42.4 23.6 194 20-249 83-286 (381)
383 PF05096 Glu_cyclase_2: Glutam 97.2 0.054 1.2E-06 40.1 16.8 195 45-280 35-249 (264)
384 PRK13616 lipoprotein LpqB; Pro 97.2 0.12 2.5E-06 43.9 18.1 154 10-193 351-525 (591)
385 KOG2395 Protein involved in va 97.2 0.012 2.6E-07 47.2 11.3 141 25-193 348-500 (644)
386 COG3490 Uncharacterized protei 97.2 0.033 7.2E-07 41.3 12.6 54 18-73 121-180 (366)
387 PF08728 CRT10: CRT10; InterP 97.1 0.071 1.5E-06 45.4 16.1 174 112-291 49-245 (717)
388 PF06433 Me-amine-dh_H: Methyl 97.1 0.075 1.6E-06 40.9 25.9 237 18-293 43-321 (342)
389 PF02897 Peptidase_S9_N: Proly 97.1 0.11 2.4E-06 42.2 30.8 245 15-293 128-405 (414)
390 COG3204 Uncharacterized protei 97.1 0.074 1.6E-06 39.7 16.4 169 8-194 85-264 (316)
391 PHA02790 Kelch-like protein; P 97.1 0.1 2.3E-06 43.2 16.5 100 25-131 274-385 (480)
392 PF14870 PSII_BNR: Photosynthe 97.0 0.094 2E-06 40.1 15.0 155 8-190 144-301 (302)
393 PF10313 DUF2415: Uncharacteri 96.9 0.0085 1.8E-07 30.3 5.4 33 54-86 1-35 (43)
394 PF10313 DUF2415: Uncharacteri 96.7 0.0085 1.8E-07 30.3 4.8 31 263-293 1-34 (43)
395 PF15390 DUF4613: Domain of un 96.7 0.12 2.7E-06 42.5 13.5 121 166-291 57-185 (671)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.053 1.2E-06 43.3 10.6 88 4-94 303-408 (415)
397 COG5276 Uncharacterized conser 96.5 0.24 5.1E-06 37.2 17.9 146 98-280 85-231 (370)
398 PRK13616 lipoprotein LpqB; Pro 96.5 0.47 1E-05 40.4 20.3 223 32-287 328-563 (591)
399 PF07995 GSDH: Glucose / Sorbo 96.5 0.31 6.7E-06 38.2 24.9 73 215-287 253-330 (331)
400 KOG1897 Damage-specific DNA bi 96.4 0.51 1.1E-05 41.5 16.0 146 20-193 784-942 (1096)
401 KOG3630 Nuclear pore complex, 96.4 0.091 2E-06 46.6 11.9 155 100-279 101-260 (1405)
402 PF12234 Rav1p_C: RAVE protein 96.4 0.43 9.4E-06 40.5 15.3 106 175-290 41-154 (631)
403 PF12234 Rav1p_C: RAVE protein 96.3 0.18 3.9E-06 42.6 12.8 107 20-131 39-157 (631)
404 PF15390 DUF4613: Domain of un 96.3 0.13 2.7E-06 42.4 11.5 121 7-131 55-187 (671)
405 KOG4499 Ca2+-binding protein R 96.3 0.18 3.9E-06 36.5 10.9 92 12-109 161-263 (310)
406 PF14727 PHTB1_N: PTHB1 N-term 96.2 0.5 1.1E-05 38.1 23.9 111 20-131 34-164 (418)
407 KOG2280 Vacuolar assembly/sort 96.2 0.68 1.5E-05 39.5 15.5 50 76-131 64-113 (829)
408 PF14727 PHTB1_N: PTHB1 N-term 96.1 0.56 1.2E-05 37.9 18.3 58 229-291 146-203 (418)
409 KOG2377 Uncharacterized conser 96.0 0.31 6.7E-06 39.0 12.0 158 57-247 26-186 (657)
410 KOG2280 Vacuolar assembly/sort 96.0 0.85 1.8E-05 39.0 19.2 105 14-126 36-151 (829)
411 PF08728 CRT10: CRT10; InterP 96.0 0.33 7.2E-06 41.6 12.8 117 10-129 102-245 (717)
412 PF14761 HPS3_N: Hermansky-Pud 95.9 0.4 8.6E-06 34.4 15.3 149 25-192 30-213 (215)
413 KOG2247 WD40 repeat-containing 95.8 0.0015 3.3E-08 51.6 -1.0 150 11-190 35-185 (615)
414 PF07569 Hira: TUP1-like enhan 95.8 0.059 1.3E-06 39.2 7.1 80 167-249 14-98 (219)
415 COG3823 Glutamine cyclotransfe 95.8 0.45 9.9E-06 33.8 12.2 114 21-142 55-170 (262)
416 KOG1916 Nuclear protein, conta 95.7 0.0055 1.2E-07 52.3 1.7 162 12-194 184-375 (1283)
417 KOG1916 Nuclear protein, conta 95.7 0.0033 7.1E-08 53.6 0.2 117 6-131 130-266 (1283)
418 KOG4499 Ca2+-binding protein R 95.6 0.56 1.2E-05 34.1 17.4 100 167-272 159-263 (310)
419 PF10168 Nup88: Nuclear pore c 95.6 1.4 3E-05 38.5 20.8 75 55-131 86-180 (717)
420 COG3386 Gluconolactonase [Carb 95.6 0.77 1.7E-05 35.5 20.9 159 35-224 87-264 (307)
421 KOG1896 mRNA cleavage and poly 95.6 1.7 3.8E-05 39.4 17.8 159 112-294 1046-1215(1366)
422 COG3386 Gluconolactonase [Carb 95.5 0.82 1.8E-05 35.4 23.1 223 20-280 34-273 (307)
423 KOG1900 Nuclear pore complex, 95.5 0.31 6.8E-06 44.1 11.3 160 29-195 95-274 (1311)
424 KOG3630 Nuclear pore complex, 95.5 0.13 2.9E-06 45.7 9.0 115 12-131 102-229 (1405)
425 KOG2377 Uncharacterized conser 95.5 0.38 8.2E-06 38.5 10.6 113 170-292 27-140 (657)
426 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.4 1.4 3E-05 37.2 24.1 67 25-94 122-199 (527)
427 PF14781 BBS2_N: Ciliary BBSom 95.4 0.44 9.6E-06 31.2 11.3 107 175-290 10-123 (136)
428 PF14761 HPS3_N: Hermansky-Pud 95.2 0.76 1.7E-05 33.0 14.5 122 67-195 29-165 (215)
429 PF14781 BBS2_N: Ciliary BBSom 95.2 0.53 1.2E-05 30.9 11.4 100 25-131 12-126 (136)
430 PF07569 Hira: TUP1-like enhan 95.1 0.27 5.9E-06 35.9 8.5 68 222-292 18-95 (219)
431 PF12768 Rax2: Cortical protei 94.9 0.81 1.8E-05 34.8 10.8 98 32-131 15-124 (281)
432 TIGR03074 PQQ_membr_DH membran 94.9 2.5 5.4E-05 37.4 22.6 69 25-93 196-287 (764)
433 COG5276 Uncharacterized conser 94.9 1.2 2.6E-05 33.7 22.0 158 54-249 87-244 (370)
434 COG3490 Uncharacterized protei 94.8 1.3 2.8E-05 33.3 15.2 152 100-280 68-243 (366)
435 PF11635 Med16: Mediator compl 94.7 2.9 6.2E-05 37.1 19.9 214 25-241 64-345 (753)
436 TIGR02276 beta_rpt_yvtn 40-res 94.7 0.2 4.3E-06 25.2 5.1 32 20-51 1-32 (42)
437 PF14583 Pectate_lyase22: Olig 94.6 1.8 3.9E-05 34.4 24.6 86 19-108 44-131 (386)
438 PLN02153 epithiospecifier prot 94.5 1.9 4.1E-05 34.1 19.8 63 21-87 32-112 (341)
439 KOG1983 Tomosyn and related SN 94.4 1.6 3.4E-05 39.8 13.0 33 9-42 34-66 (993)
440 PF10168 Nup88: Nuclear pore c 94.4 3 6.6E-05 36.5 14.2 78 213-293 83-180 (717)
441 COG5167 VID27 Protein involved 94.3 2.5 5.4E-05 34.8 12.9 150 56-246 469-632 (776)
442 PRK13684 Ycf48-like protein; P 94.1 2.3 5E-05 33.5 14.9 110 8-126 172-284 (334)
443 TIGR03118 PEPCTERM_chp_1 conse 94.1 2 4.3E-05 32.8 25.3 239 12-272 26-307 (336)
444 KOG1900 Nuclear pore complex, 94.0 2.8 6E-05 38.6 13.3 34 260-293 240-273 (1311)
445 PF14583 Pectate_lyase22: Olig 94.0 2.5 5.4E-05 33.6 24.7 107 20-131 90-223 (386)
446 TIGR03547 muta_rot_YjhT mutatr 93.8 2.8 6E-05 33.2 20.7 42 239-284 291-332 (346)
447 PF11715 Nup160: Nucleoporin N 93.4 0.58 1.3E-05 39.7 8.2 69 25-93 160-257 (547)
448 COG5167 VID27 Protein involved 93.3 4 8.6E-05 33.7 12.6 143 21-194 478-633 (776)
449 PF12657 TFIIIC_delta: Transcr 93.2 1.3 2.7E-05 31.1 8.5 33 99-131 85-122 (173)
450 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.2 4.7 0.0001 34.2 21.9 201 67-293 70-334 (527)
451 TIGR03548 mutarot_permut cycli 93.0 3.6 7.8E-05 32.3 19.8 64 65-131 72-148 (323)
452 PF10647 Gmad1: Lipoprotein Lp 92.9 3.1 6.8E-05 31.3 16.8 156 10-185 25-186 (253)
453 TIGR03118 PEPCTERM_chp_1 conse 92.6 3.7 8E-05 31.5 19.2 214 55-292 24-279 (336)
454 PF05694 SBP56: 56kDa selenium 92.6 4.8 0.0001 32.6 17.4 173 19-197 138-346 (461)
455 PF08801 Nucleoporin_N: Nup133 92.4 4.1 8.8E-05 33.4 11.6 29 166-194 190-220 (422)
456 TIGR02276 beta_rpt_yvtn 40-res 92.0 0.85 1.8E-05 22.8 5.8 29 65-93 2-31 (42)
457 TIGR03548 mutarot_permut cycli 91.7 5.3 0.00012 31.3 19.5 100 174-283 123-233 (323)
458 KOG4460 Nuclear pore complex, 91.5 7.3 0.00016 32.4 11.9 76 216-293 105-199 (741)
459 PF11635 Med16: Mediator compl 91.4 10 0.00022 33.9 21.3 71 215-287 260-345 (753)
460 PF11715 Nup160: Nucleoporin N 91.2 1.6 3.4E-05 37.2 8.2 65 229-293 159-249 (547)
461 KOG2247 WD40 repeat-containing 91.1 0.062 1.3E-06 43.1 -0.0 103 13-125 79-183 (615)
462 PF08801 Nucleoporin_N: Nup133 91.0 7.8 0.00017 31.8 15.7 30 263-292 190-219 (422)
463 PLN02153 epithiospecifier prot 90.7 7.1 0.00015 30.9 18.4 43 238-282 217-260 (341)
464 PF02897 Peptidase_S9_N: Proly 90.3 8.9 0.00019 31.3 23.1 72 55-132 125-212 (414)
465 PLN02193 nitrile-specifier pro 90.2 9.8 0.00021 31.8 22.1 64 65-131 228-303 (470)
466 KOG3616 Selective LIM binding 90.2 9.7 0.00021 33.3 11.5 110 12-129 16-125 (1636)
467 KOG1897 Damage-specific DNA bi 90.2 14 0.0003 33.4 22.7 106 25-131 501-614 (1096)
468 PLN02193 nitrile-specifier pro 90.1 10 0.00022 31.7 18.4 52 230-283 331-387 (470)
469 PF14870 PSII_BNR: Photosynthe 89.6 8.2 0.00018 29.9 26.8 230 7-283 15-253 (302)
470 COG4257 Vgb Streptogramin lyas 89.3 7.8 0.00017 29.3 19.5 97 18-119 69-166 (353)
471 PF02333 Phytase: Phytase; In 88.7 11 0.00024 30.2 21.0 203 65-293 67-291 (381)
472 TIGR03074 PQQ_membr_DH membran 88.7 17 0.00038 32.5 18.4 69 25-94 262-354 (764)
473 smart00564 PQQ beta-propeller 88.5 1.6 3.5E-05 20.3 3.8 25 67-91 7-31 (33)
474 KOG2063 Vacuolar assembly/sort 88.3 19 0.00041 32.5 16.6 66 20-88 24-100 (877)
475 PF03022 MRJP: Major royal jel 88.2 10 0.00022 29.2 14.0 197 77-280 35-253 (287)
476 PF02333 Phytase: Phytase; In 87.6 13 0.00028 29.8 17.0 76 215-293 156-238 (381)
477 PF12341 DUF3639: Protein of u 87.3 1.8 3.9E-05 19.5 3.6 26 54-82 2-27 (27)
478 PRK10115 protease 2; Provision 86.6 22 0.00048 31.5 30.8 108 16-130 132-255 (686)
479 PF01436 NHL: NHL repeat; Int 86.6 2 4.4E-05 19.4 4.0 25 265-289 4-28 (28)
480 smart00036 CNH Domain found in 86.3 14 0.0003 28.8 24.2 99 25-131 15-132 (302)
481 KOG1898 Splicing factor 3b, su 86.0 28 0.0006 31.9 15.6 177 34-245 854-1047(1205)
482 PF07676 PD40: WD40-like Beta 85.7 2.9 6.3E-05 20.5 4.6 29 8-38 8-38 (39)
483 COG1520 FOG: WD40-like repeat 85.7 17 0.00037 29.2 21.6 102 25-133 70-174 (370)
484 PF01011 PQQ: PQQ enzyme repea 84.9 3.3 7.1E-05 20.3 4.3 27 68-94 2-28 (38)
485 TIGR02604 Piru_Ver_Nterm putat 84.8 19 0.00041 29.0 15.9 157 100-284 14-205 (367)
486 PF01011 PQQ: PQQ enzyme repea 84.7 3.4 7.3E-05 20.2 5.2 28 230-257 2-29 (38)
487 PRK14131 N-acetylneuraminic ac 84.5 20 0.00043 29.0 21.9 40 240-283 314-353 (376)
488 KOG3611 Semaphorins [Signal tr 84.3 20 0.00043 31.8 10.4 74 215-288 408-489 (737)
489 KOG1983 Tomosyn and related SN 84.2 36 0.00077 31.7 14.7 33 54-87 36-68 (993)
490 KOG2714 SETA binding protein S 84.2 21 0.00045 29.0 15.2 65 68-133 237-309 (465)
491 PLN00033 photosystem II stabil 84.1 21 0.00046 29.0 15.9 157 8-191 238-397 (398)
492 COG3823 Glutamine cyclotransfe 84.1 14 0.0003 26.8 14.4 103 65-196 55-161 (262)
493 PF12657 TFIIIC_delta: Transcr 83.8 13 0.00027 26.1 9.9 29 263-291 86-120 (173)
494 KOG4460 Nuclear pore complex, 83.5 25 0.00055 29.5 14.1 31 99-130 103-133 (741)
495 PF10214 Rrn6: RNA polymerase 83.5 34 0.00073 30.9 20.6 124 7-132 78-234 (765)
496 PF07676 PD40: WD40-like Beta 83.4 3.9 8.4E-05 20.0 5.0 28 215-243 9-38 (39)
497 TIGR03606 non_repeat_PQQ dehyd 83.4 25 0.00053 29.2 16.3 157 100-279 30-246 (454)
498 KOG4659 Uncharacterized conser 83.1 43 0.00094 31.8 18.0 25 260-284 659-683 (1899)
499 PF10214 Rrn6: RNA polymerase 82.5 37 0.0008 30.6 24.2 79 51-130 77-176 (765)
500 PF03088 Str_synth: Strictosid 82.5 6.4 0.00014 24.0 5.1 51 234-289 33-85 (89)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-51 Score=294.70 Aligned_cols=256 Identities=24% Similarity=0.338 Sum_probs=222.4
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
.+.+|.++|.|++|+ |+|. .|++|+.|.++|+||+.+..+..+.++|...|.|++|+| |+..||+|+.||+|++||
T Consensus 110 S~~GH~e~Vl~~~fs--p~g~-~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFS--PTGS-RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWD 185 (480)
T ss_pred ccCCCCCcEEEEEec--CCCc-eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEec
Confidence 356899999999998 8999 999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecC----CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPS----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
..+|+++..- +.+|...|++++|.|- ...+|++++.||.++|||+.. ...+
T Consensus 186 pktg~~~g~~--l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-----------------------~~~~ 240 (480)
T KOG0271|consen 186 PKTGQQIGRA--LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-----------------------GTCV 240 (480)
T ss_pred CCCCCccccc--ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-----------------------ceEE
Confidence 9999876432 2389999999999872 457899999999999999998 5668
Q ss_pred EEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCC-------------------------------------
Q 022590 159 FIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPG------------------------------------- 200 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~------------------------------------- 200 (294)
..+.+|..+|+|+.|- ..++++++.|++|++|+...+.....
T Consensus 241 ~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred EEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 8899999999999998 67999999999999998876432100
Q ss_pred ---------------------------------CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590 201 ---------------------------------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 247 (294)
Q Consensus 201 ---------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 247 (294)
....+++....+|..-|+.+.|+|++ .++|+++-|..|++||.++
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~--r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG--RYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc--cEEEEeecccceeeeeCCC
Confidence 00112233455677889999999999 6999999999999999999
Q ss_pred CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 248 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
++ ....+. +|-.+|..++|+.|.++|++|+.|.++++|++++
T Consensus 399 Gk--~lasfR--GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 399 GK--FLASFR--GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred cc--hhhhhh--hccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 97 444554 8999999999999999999999999999999975
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8e-49 Score=285.60 Aligned_cols=247 Identities=18% Similarity=0.304 Sum_probs=225.9
Q ss_pred CCcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 1 MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 1 ~~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
++.+++|.+.|.++.|.|-.++. -+|+++.||++++|++++..++..+.+|...|..++|+| +|++|++++.|.+-++
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~-~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDL-NLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRL 287 (459)
T ss_pred eEEEeccccceeeEEEccCCCcc-ceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchhh
Confidence 36788999999999998432344 799999999999999999999999999999999999999 9999999999999999
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
||+.++..+.... ||...|.+++|+| +|.++++|+.|..-+|||+++ ...+..
T Consensus 288 WD~~tk~ElL~QE---GHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt-----------------------gr~im~ 340 (459)
T KOG0272|consen 288 WDLETKSELLLQE---GHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT-----------------------GRCIMF 340 (459)
T ss_pred cccccchhhHhhc---ccccccceeEecC-CCceeeccCccchhheeeccc-----------------------CcEEEE
Confidence 9999998887777 8999999999999 999999999999999999999 566888
Q ss_pred eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590 161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 238 (294)
Q Consensus 161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 238 (294)
+.+|..+|.++.|+ |..+++|+.|++++|||++... .+..++.|..-|..++|+|.. +.+|++++.|+
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~---------~ly~ipAH~nlVS~Vk~~p~~-g~fL~TasyD~ 410 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS---------ELYTIPAHSNLVSQVKYSPQE-GYFLVTASYDN 410 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCcEEEeeecccc---------cceecccccchhhheEecccC-CeEEEEcccCc
Confidence 99999999999997 7899999999999999999665 578889999999999999943 37999999999
Q ss_pred eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
++++|...+.+ +...+. +|.+.|.++.++|++++++|++.|.++++|.
T Consensus 411 t~kiWs~~~~~--~~ksLa--GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 411 TVKIWSTRTWS--PLKSLA--GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ceeeecCCCcc--cchhhc--CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999886 444555 9999999999999999999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.2e-48 Score=282.45 Aligned_cols=243 Identities=19% Similarity=0.329 Sum_probs=223.3
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC-CCceEEEeeCCCcEEEEEcC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~ 84 (294)
+-+.+|..+.|+ ++++ .|++|+.+|.++||+..+...+++|.+|...|.++.|+|. ++..+|+|+.||++++|++.
T Consensus 173 gd~rPis~~~fS--~ds~-~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFS--RDSK-HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEee--cCCC-eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456789999998 8998 9999999999999999999999999999999999999996 36789999999999999999
Q ss_pred CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
+..++..+. +|...|..++|+| +|.+|+|++.|.+-++||+++ ...+....+|
T Consensus 250 ~e~~l~~l~---gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~t-----------------------k~ElL~QEGH 302 (459)
T KOG0272|consen 250 QETPLQDLE---GHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLET-----------------------KSELLLQEGH 302 (459)
T ss_pred CCcchhhhh---cchhhheeeeecC-CCceeeecccccchhhccccc-----------------------chhhHhhccc
Confidence 888888888 7999999999999 999999999999999999999 5556778899
Q ss_pred CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
...|.+++|+ |.++++|+.|..-+|||++++. .+..+.+|..+|..++|+|+| ..||+|+.|++++|
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr---------~im~L~gH~k~I~~V~fsPNG--y~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR---------CIMFLAGHIKEILSVAFSPNG--YHLATGSSDNTCKV 371 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccCc---------EEEEecccccceeeEeECCCc--eEEeecCCCCcEEE
Confidence 9999999996 9999999999999999999887 688889999999999999999 68999999999999
Q ss_pred EeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEEeccCCcEEEEecCC
Q 022590 243 WELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vw~~~~ 293 (294)
||++..+. ...++ +|.+-|+.++|+| .|.+|+|++.|++++||...+
T Consensus 372 WDLR~r~~--ly~ip--AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 372 WDLRMRSE--LYTIP--AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred eeeccccc--ceecc--cccchhhheEecccCCeEEEEcccCcceeeecCCC
Confidence 99998764 44554 8899999999999 789999999999999998653
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-47 Score=273.83 Aligned_cols=266 Identities=23% Similarity=0.389 Sum_probs=222.7
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc-ceecccCcceEEEEeCCC----CCceEEEeeCCC
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPL----KPSLVVSASKDE 76 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg 76 (294)
...+.|..-|.|++|+ |||+ .||+|+.||+|++||.++++++ ..+.+|...|++++|.|. ..++||+++.||
T Consensus 151 ~t~KgH~~WVlcvaws--PDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWS--PDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred eeecCCccEEEEEEEC--CCcc-hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence 3467899999999998 9999 9999999999999999988755 678999999999999873 456899999999
Q ss_pred cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccc--------cee-------
Q 022590 77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK--------SFT------- 141 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--------~~~------- 141 (294)
+|+|||+..+.++..+. +|+.+|+|++|- +..++++|+.|++|++|+...+....+. .+.
T Consensus 228 ~vrIWd~~~~~~~~~ls---gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 228 SVRIWDTKLGTCVRTLS---GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVL 302 (480)
T ss_pred CEEEEEccCceEEEEec---cCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhh
Confidence 99999999999999888 799999999996 5678999999999999998873322111 000
Q ss_pred ----ec--CCC-CCC----------------------------------CCceeeeceEEeecCCCceeeccee--cceE
Q 022590 142 ----WT--DLP-SKF----------------------------------PTKYVQFPVFIASVHSNYVDCNRWL--GDFI 178 (294)
Q Consensus 142 ----~~--~~~-~~~----------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 178 (294)
+. +.. ... .......|+....+|..-|+.+.|+ +.++
T Consensus 303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~I 382 (480)
T KOG0271|consen 303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYI 382 (480)
T ss_pred hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEE
Confidence 00 000 000 0112234566778899999999997 7899
Q ss_pred EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc
Q 022590 179 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 258 (294)
Q Consensus 179 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (294)
++++.|..|++||-++++ .+..+.+|-..|+.++|+.|. ++|++|+.|.++++|++++.+ ....++
T Consensus 383 ASaSFDkSVkLW~g~tGk---------~lasfRGHv~~VYqvawsaDs--RLlVS~SkDsTLKvw~V~tkK--l~~DLp- 448 (480)
T KOG0271|consen 383 ASASFDKSVKLWDGRTGK---------FLASFRGHVAAVYQVAWSADS--RLLVSGSKDSTLKVWDVRTKK--LKQDLP- 448 (480)
T ss_pred EEeecccceeeeeCCCcc---------hhhhhhhccceeEEEEeccCc--cEEEEcCCCceEEEEEeeeee--ecccCC-
Confidence 999999999999999887 678888999999999999998 799999999999999999875 444444
Q ss_pred cccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 259 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 259 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
+|...|.++.|+|||+.+++|+.|..+++|.
T Consensus 449 -Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 449 -GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 8999999999999999999999999999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-44 Score=247.69 Aligned_cols=248 Identities=24% Similarity=0.357 Sum_probs=208.1
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
.+++|+..|..+..+ +||+ +.++++.|+++++||+.+++..+.|.+|...|.+++|++ +.+.+++|+.|.+|++|+
T Consensus 58 ~~~GHsH~v~dv~~s--~dg~-~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLS--SDGN-FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred eeeccceEecceEEc--cCCc-eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeee
Confidence 356899999999998 9999 999999999999999999999999999999999999999 889999999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
+. +.+..++... .+.+.|+|+.|+|+. +.+|++++.|+++++||+++ ......+
T Consensus 134 t~-g~ck~t~~~~-~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----------------------~~l~~~~ 188 (315)
T KOG0279|consen 134 TL-GVCKYTIHED-SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----------------------CQLRTTF 188 (315)
T ss_pred ec-ccEEEEEecC-CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----------------------cchhhcc
Confidence 95 4455444421 237899999999943 78899999999999999998 4556677
Q ss_pred ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590 162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 239 (294)
Q Consensus 162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 239 (294)
.+|.+.++.+.++ |.+.++|+.||.+.+||++.++. +..+ .+...|.+++|+|+. +.++...+..
T Consensus 189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~---------lysl-~a~~~v~sl~fspnr---ywL~~at~~s 255 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN---------LYSL-EAFDIVNSLCFSPNR---YWLCAATATS 255 (315)
T ss_pred ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce---------eEec-cCCCeEeeEEecCCc---eeEeeccCCc
Confidence 8899999999987 88999999999999999998762 3333 346779999999997 4444445556
Q ss_pred EEEEeccCCCceeeeecccccc-----CCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 240 IFVWELQSSPPVLIARLSHAQS-----KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
|+|||+.+...+....+...+. .....+++|++||+.|++|..|+.|++|.+.
T Consensus 256 IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 256 IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999999987655555543222 3345788999999999999999999999875
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-43 Score=245.92 Aligned_cols=244 Identities=21% Similarity=0.356 Sum_probs=211.6
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC-----CccccceecccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-----NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES 77 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 77 (294)
+++.|.+.|..++.. +.+...+++++.|..+.+|++. .|.+++.+++|...|..+..++ ++++.++++.|++
T Consensus 10 tl~gh~d~Vt~la~~--~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~ 86 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIK--IKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGT 86 (315)
T ss_pred eecCCCceEEEEEee--cCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccce
Confidence 678999999999998 4444489999999999999985 3677899999999999999999 9999999999999
Q ss_pred EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
+++||+.+++..+.|. +|...|.+++|+| ++..+++|+.|.+|++|++... ..
T Consensus 87 lrlWDl~~g~~t~~f~---GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-----------------------ck 139 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFV---GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-----------------------CK 139 (315)
T ss_pred EEEEEecCCcEEEEEE---ecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-----------------------EE
Confidence 9999999999999999 7999999999999 8889999999999999999872 22
Q ss_pred eEEeec-CCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590 158 VFIASV-HSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 232 (294)
Q Consensus 158 ~~~~~~-~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 232 (294)
...... +.+.|.|+.|+ ..+|++++.|+++++||+++.+ ....+.+|...++.+++|||| ...+
T Consensus 140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---------l~~~~~gh~~~v~t~~vSpDG--slca 208 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---------LRTTFIGHSGYVNTVTVSPDG--SLCA 208 (315)
T ss_pred EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---------hhhccccccccEEEEEECCCC--CEEe
Confidence 222222 38899999997 3489999999999999999665 567788899999999999999 5899
Q ss_pred EEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 233 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+|+.||.+.+||++.++. ...+ .+...|.+++|+|+...|+.+. +..|+|||+++
T Consensus 209 sGgkdg~~~LwdL~~~k~--lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~ 263 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKN--LYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLES 263 (315)
T ss_pred cCCCCceEEEEEccCCce--eEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccc
Confidence 999999999999999874 3333 5668899999999987776664 44599999875
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-43 Score=244.83 Aligned_cols=247 Identities=17% Similarity=0.257 Sum_probs=219.3
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
.|+.|.+.|+++.|+ +|.+ ++++++.||.+.|||.-+....+.++.....|..++|+| +++++|.|+-|+...||+
T Consensus 50 ~LkGH~~Ki~~~~ws--~Dsr-~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWS--TDSR-RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EecccccceeeeEec--CCcC-eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEe
Confidence 478999999999998 8998 999999999999999999988888988899999999999 999999999999999999
Q ss_pred cCCC--c-eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590 83 VQTG--I-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 159 (294)
Q Consensus 83 ~~~~--~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (294)
+.+. + .+..-+.+.+|.+.+.|+.|-+ + ..|+|++.|.++.+||+++ .....
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~-----------------------g~~~~ 180 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIET-----------------------GQQTQ 180 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEccc-----------------------ceEEE
Confidence 9855 1 1122222338999999999986 5 4599999999999999999 55678
Q ss_pred EeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590 160 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 236 (294)
Q Consensus 160 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 236 (294)
.+.+|.+.|.++++. ++.+++|+.|+..++||+|.+. ..+.+.+|+..|++++|.|+| .-+++|++
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~---------c~qtF~ghesDINsv~ffP~G--~afatGSD 249 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ---------CVQTFEGHESDINSVRFFPSG--DAFATGSD 249 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc---------eeEeecccccccceEEEccCC--CeeeecCC
Confidence 889999999999885 7899999999999999999765 789999999999999999999 58999999
Q ss_pred CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
|++.++||++..+.+.... +.....+|++++||..|++|++|..|..+.+||.
T Consensus 250 D~tcRlyDlRaD~~~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 250 DATCRLYDLRADQELAVYS--HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred CceeEEEeecCCcEEeeec--cCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 9999999999987544444 4466789999999999999999999999999996
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-44 Score=281.08 Aligned_cols=240 Identities=25% Similarity=0.458 Sum_probs=217.4
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-------------------------------ccceecccCcce
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-------------------------------LHKSFVGHGDSI 56 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------------------------------~~~~~~~h~~~v 56 (294)
...++|..|+ +++. +||.|..|..|++|.+...+ ..+++.+|.++|
T Consensus 378 ~~~v~ca~fS--ddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 378 YQGVTCAEFS--DDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred CCcceeEeec--CCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 4578888887 8888 99999999999999886311 123567899999
Q ss_pred EEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccc
Q 022590 57 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV 136 (294)
Q Consensus 57 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 136 (294)
..+.|+| +.++|++++.|+++|+|.+.+..++..++ +|..||+++.|+| .+.+|||++.|++-++|....
T Consensus 455 yg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~---GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~----- 524 (707)
T KOG0263|consen 455 YGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYK---GHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDH----- 524 (707)
T ss_pred eeeeecc-cccceeeccCCcceeeeecccceeEEEec---CCCcceeeEEecC-CceEEEecCCCceeeeeeccc-----
Confidence 9999999 89999999999999999999999999888 7999999999999 899999999999999999998
Q ss_pred ccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC
Q 022590 137 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE 214 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 214 (294)
..|...+.+|.+.|.|+.|+ .+++++|+.|.++|+||+.++. .++.+.+|.
T Consensus 525 ------------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~---------~VRiF~GH~ 577 (707)
T KOG0263|consen 525 ------------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN---------SVRIFTGHK 577 (707)
T ss_pred ------------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc---------EEEEecCCC
Confidence 67888999999999999997 7899999999999999999876 688889999
Q ss_pred CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 215 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 215 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.+|.+++|||+| .+|++|+.||.|.+||+.+++. ...+. +|.+.|.++.|+.+|..||+|+.|..|++||+..
T Consensus 578 ~~V~al~~Sp~G--r~LaSg~ed~~I~iWDl~~~~~--v~~l~--~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 578 GPVTALAFSPCG--RYLASGDEDGLIKIWDLANGSL--VKQLK--GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CceEEEEEcCCC--ceEeecccCCcEEEEEcCCCcc--hhhhh--cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999 7999999999999999999863 33443 7789999999999999999999999999999853
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-42 Score=254.35 Aligned_cols=240 Identities=22% Similarity=0.380 Sum_probs=216.6
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
...|++++|+ .+|. +||+|+.||.+++|+. +|.++.++..|.++|.++.|+. .+.+|++++.|+++.+||..++.
T Consensus 235 nkdVT~L~Wn--~~G~-~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWN--NDGT-LLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEec--CCCC-eEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCce
Confidence 4689999998 8898 9999999999999995 6788899999999999999999 99999999999999999999999
Q ss_pred eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590 88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (294)
....+. -|..+-..+.|- +...|++++.|+.|+|+.+.. ..|+..+.+|.+.
T Consensus 310 ~~q~f~---~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~-----------------------~~P~~t~~GH~g~ 361 (524)
T KOG0273|consen 310 VKQQFE---FHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGE-----------------------DRPVKTFIGHHGE 361 (524)
T ss_pred EEEeee---eccCCccceEEe--cCceEeecCCCceEEEEEecC-----------------------CCcceeeecccCc
Confidence 998888 488887889997 556699999999999999998 7788899999999
Q ss_pred eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC-------cceEEEEcCCC
Q 022590 168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-------YNAAAIGNREG 238 (294)
Q Consensus 168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~l~~~~~dg 238 (294)
|.++.|+ +.+|++++.|++++||...... ....+..|...|+.+.|+|.+. +..+++++.|+
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~---------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds 432 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMGQSN---------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS 432 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecCCCc---------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence 9999998 8999999999999999987544 5677788889999999999874 36799999999
Q ss_pred eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+|++||+..+.+ ...+. .|..+|.+++|+|+|+|+|+|+.||.|.+|++++
T Consensus 433 tV~lwdv~~gv~--i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 433 TVKLWDVESGVP--IHTLM--KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred eEEEEEccCCce--eEeec--cCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 999999999874 44443 8889999999999999999999999999999874
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-41 Score=236.18 Aligned_cols=238 Identities=21% Similarity=0.357 Sum_probs=208.7
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc------cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
..|-.++|+ |.|+ ++|+|+.|+...||++.+. +..+.+.+|++-+.|+.|-+ ...|++++.|.+..+||
T Consensus 98 ~WVMtCA~s--PSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 98 SWVMTCAYS--PSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWD 172 (343)
T ss_pred eeEEEEEEC--CCCC-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEE
Confidence 345555555 9998 9999999999999999855 45567899999999999987 45789999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+++++.+..|. +|.+.|.+|.++|.+++.+++|+.|+..++||+|. ...+..+.
T Consensus 173 ie~g~~~~~f~---GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-----------------------~~c~qtF~ 226 (343)
T KOG0286|consen 173 IETGQQTQVFH---GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-----------------------GQCVQTFE 226 (343)
T ss_pred cccceEEEEec---CCcccEEEEecCCCCCCeEEecccccceeeeeccC-----------------------cceeEeec
Confidence 99999999999 79999999999998899999999999999999999 66788999
Q ss_pred cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590 163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 240 (294)
Q Consensus 163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 240 (294)
+|+..|+++.|. |.-|++|+.|++.++||+|..++. .+........+|++++||..| ++|++|..|..+
T Consensus 227 ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-------a~ys~~~~~~gitSv~FS~SG--RlLfagy~d~~c 297 (343)
T KOG0286|consen 227 GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-------AVYSHDSIICGITSVAFSKSG--RLLFAGYDDFTC 297 (343)
T ss_pred ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-------eeeccCcccCCceeEEEcccc--cEEEeeecCCce
Confidence 999999999996 889999999999999999976531 122233345789999999999 699999999999
Q ss_pred EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
.+||.-.++ ....+. +|.+.|+++..+|||.-|+||+.|..++||.
T Consensus 298 ~vWDtlk~e--~vg~L~--GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 298 NVWDTLKGE--RVGVLA--GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEeeccccc--eEEEee--ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999998876 334444 9999999999999999999999999999994
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-43 Score=255.66 Aligned_cols=244 Identities=20% Similarity=0.334 Sum_probs=215.9
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc-CcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
+..|+.+|.++.|+ ++|. ++++|+.+|.|++|+..- ..++.+++| ...|++++|+| +...+++++.||+|+|||
T Consensus 134 lQaHDs~Vr~m~ws--~~g~-wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWS--HNGT-WMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred hhhhcccceeEEEc--cCCC-EEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEe
Confidence 45899999999998 8898 999999999999999754 444555555 48999999999 778899999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
....+....+. +|.-.|.+++|+| ...++++++.|..|++||.++ ...+..+.
T Consensus 209 f~~~kee~vL~---GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS-----------------------g~cl~tlh 261 (464)
T KOG0284|consen 209 FRMPKEERVLR---GHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS-----------------------GSCLATLH 261 (464)
T ss_pred ccCCchhheec---cCCCCcceeccCC-ccceeEEccCCceeEeecCCC-----------------------cchhhhhh
Confidence 99888877777 7999999999999 778899999999999999999 56678889
Q ss_pred cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590 163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 240 (294)
Q Consensus 163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 240 (294)
.|...|..+.|+ +++|++++.|..++++|+++.+ .++.+..|...++++.|+|-.. .+|.+|+.||.|
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk---------El~~~r~Hkkdv~~~~WhP~~~-~lftsgg~Dgsv 331 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK---------ELFTYRGHKKDVTSLTWHPLNE-SLFTSGGSDGSV 331 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH---------HHHHhhcchhhheeeccccccc-cceeeccCCCce
Confidence 999999999997 8999999999999999999544 5778888999999999999887 699999999999
Q ss_pred EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
..|.+...+++..... +|...|.+++|+|-|..|++|+.|.++++|.-.
T Consensus 332 vh~~v~~~~p~~~i~~---AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPP---AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEEeccccccccCCCc---ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999986654433332 778999999999999999999999999999753
No 12
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-42 Score=231.29 Aligned_cols=245 Identities=20% Similarity=0.311 Sum_probs=215.9
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
.++.++++|.++.|+ -+|+ |.++++.|.+|++|+...+.+++++.+|..+|..++.+. ++..+++|+.|..+.+||
T Consensus 12 ~l~~~qgaV~avryN--~dGn-Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYN--VDGN-YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWD 87 (307)
T ss_pred eecccccceEEEEEc--cCCC-EEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEE
Confidence 467899999999998 8998 999999999999999999999999999999999999999 888999999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+.+|+..+.+. +|.+.|+.++|+. +...+++|+.|.++++||.+... ..|++.+.
T Consensus 88 V~TGkv~Rr~r---gH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s---------------------~ePiQild 142 (307)
T KOG0316|consen 88 VNTGKVDRRFR---GHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS---------------------FEPIQILD 142 (307)
T ss_pred cccCeeeeecc---cccceeeEEEecC-cceEEEeccccceeEEEEcccCC---------------------CCccchhh
Confidence 99999999999 7999999999998 88999999999999999999843 45677788
Q ss_pred cCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 163 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 163 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
...+.|.++...+..+++|+.||+++.||++.+.. .. ..-..+|++++|++++ +..++++.|+.+++
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l---------~s--Dy~g~pit~vs~s~d~--nc~La~~l~stlrL 209 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTL---------SS--DYFGHPITSVSFSKDG--NCSLASSLDSTLRL 209 (307)
T ss_pred hhcCceeEEEecccEEEeeccCCcEEEEEeeccee---------eh--hhcCCcceeEEecCCC--CEEEEeeccceeee
Confidence 88899999999999999999999999999998753 21 2235689999999999 68999999999999
Q ss_pred EeccCCCceeeeeccccccC--CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 243 WELQSSPPVLIARLSHAQSK--SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.|-.+++. ..... +|. ..=...+++.....+++|++||.|++||+..
T Consensus 210 lDk~tGkl--L~sYk--Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 210 LDKETGKL--LKSYK--GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cccchhHH--HHHhc--ccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 99999873 33333 443 3345677788888999999999999999864
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.6e-41 Score=229.12 Aligned_cols=248 Identities=16% Similarity=0.271 Sum_probs=205.8
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
..+..|+.+... |+++ .||+++.- .||+||+.+++ ++.++.+|++.|+++.|.. +++.+++|+.||+++|||+
T Consensus 38 h~dsqVNrLeiT--pdk~-~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 38 HPDSQVNRLEIT--PDKK-DLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred cCccceeeEEEc--CCcc-hhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEec
Confidence 345789999997 8998 78887754 79999998765 5889999999999999999 9999999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
+...+.+.++ |..+|+++..+| +...|++|..+|.|++||+....... .....
T Consensus 113 R~~~~qR~~~----~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~----------------------~liPe 165 (311)
T KOG0315|consen 113 RSLSCQRNYQ----HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTH----------------------ELIPE 165 (311)
T ss_pred cCcccchhcc----CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCcccc----------------------ccCCC
Confidence 9988877776 889999999999 77779999999999999999832111 11111
Q ss_pred CCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 164 HSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 164 ~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
...+|.++.. +|.+++.+...|..++|++-.... .....++.+++.|...+..+.+||++ .+|++++.|.+++
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~---~s~l~P~~k~~ah~~~il~C~lSPd~--k~lat~ssdktv~ 240 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT---ASELEPVHKFQAHNGHILRCLLSPDV--KYLATCSSDKTVK 240 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc---cccceEhhheecccceEEEEEECCCC--cEEEeecCCceEE
Confidence 2234444433 499999999999999999987432 22455677889999999999999999 5999999999999
Q ss_pred EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
||+.++. ......+. +|...+..++||.||+||+||+.|+.+++|+++.
T Consensus 241 iwn~~~~-~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 241 IWNTDDF-FKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred EEecCCc-eeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 9999887 33344444 8889999999999999999999999999999864
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.3e-42 Score=244.92 Aligned_cols=242 Identities=19% Similarity=0.377 Sum_probs=219.2
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+..|.+.|.|+++. |.++ ++++|+.|++|+|||+.++++..++.+|-..|..+++++ -..++++++.|+.|+.||+
T Consensus 147 i~gHlgWVr~vavd--P~n~-wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVD--PGNE-WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhccceEEEEeeC--CCce-eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEec
Confidence 56899999999997 7776 999999999999999999999999999999999999999 7789999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
+..+.++.+. +|-+.|.|++.+| .-..|++|+.|.++++||+++ +.++..+.+
T Consensus 223 e~nkvIR~Yh---GHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRt-----------------------r~~V~~l~G 275 (460)
T KOG0285|consen 223 EYNKVIRHYH---GHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRT-----------------------RASVHVLSG 275 (460)
T ss_pred hhhhhHHHhc---cccceeEEEeccc-cceeEEecCCcceEEEeeecc-----------------------cceEEEecC
Confidence 9999998888 7999999999999 778899999999999999999 778999999
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
|..+|..+.+. ...+++|+.|++|++||++.++ ....+..|...+.+++.+|.. ..+++++.|. |+
T Consensus 276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk---------t~~tlt~hkksvral~lhP~e--~~fASas~dn-ik 343 (460)
T KOG0285|consen 276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK---------TMITLTHHKKSVRALCLHPKE--NLFASASPDN-IK 343 (460)
T ss_pred CCCcceeEEeecCCCceEEecCCceEEEeeeccCc---------eeEeeecccceeeEEecCCch--hhhhccCCcc-ce
Confidence 99999999997 7899999999999999999876 566777888899999999997 5778777765 99
Q ss_pred EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
-|++..+. ....+. +|...|++++...|+ ++++|+++|.+.+||.++
T Consensus 344 ~w~~p~g~--f~~nls--gh~~iintl~~nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 344 QWKLPEGE--FLQNLS--GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred eccCCccc--hhhccc--cccceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence 99998886 333344 888999999998886 889999999999999875
No 15
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-41 Score=230.54 Aligned_cols=246 Identities=18% Similarity=0.343 Sum_probs=214.0
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
+-++.++.++|+.+.+ +.+++++.||+++|||+.. .++++.++.|..+|.++.|++...+.+++++.|++|++|+..
T Consensus 58 d~~D~LfdV~Wse~~e--~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHE--NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred ecccceeEeeecCCCc--ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence 3467899999995444 4799999999999999643 468889999999999999999888899999999999999999
Q ss_pred CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
.++.+.++. +|...|...+|+|..++++++++.|+++++||++.. .....+..|
T Consensus 136 r~~Sv~Tf~---gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-----------------------gk~~~i~ah 189 (311)
T KOG0277|consen 136 RPNSVQTFN---GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-----------------------GKFMSIEAH 189 (311)
T ss_pred CCcceEeec---CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-----------------------CceeEEEec
Confidence 999999988 799999999999999999999999999999999982 233448889
Q ss_pred CCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 165 SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 165 ~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
...|.++.|+ .+.+++|+.|+.|+.||+++.+. ++.++.+|.-.|..++|||... .+|++++.|-+++
T Consensus 190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--------pl~eL~gh~~AVRkvk~Sph~~-~lLaSasYDmT~r 260 (311)
T KOG0277|consen 190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--------PLFELNGHGLAVRKVKFSPHHA-SLLASASYDMTVR 260 (311)
T ss_pred cceeEeecccccCCcEEEecCCCceEEEEehhhccc--------cceeecCCceEEEEEecCcchh-hHhhhccccceEE
Confidence 9999999997 78999999999999999998664 5778889999999999999876 7999999999999
Q ss_pred EEeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEEeccCCcEEEEec
Q 022590 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vw~~ 291 (294)
|||...+.. ...+.. .|..-+..+.|++ ++.++|+++.|+.++||+-
T Consensus 261 iw~~~~~ds-~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 261 IWDPERQDS-AIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecccccchh-hhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence 999986542 222333 6778899999998 5679999999999999983
No 16
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=100.00 E-value=2.2e-40 Score=234.66 Aligned_cols=290 Identities=51% Similarity=0.970 Sum_probs=250.5
Q ss_pred ccc-ccCceeEEEEEeecCC-CceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 3 YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 3 ~~~-~h~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
|.+ +|++..+.++|++... +++++|+|+.-|.|+|.|+.+++....+.+|..+|+.|.++|...+++++++.|.+||+
T Consensus 83 y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRl 162 (385)
T KOG1034|consen 83 YADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL 162 (385)
T ss_pred ccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence 455 6999999999998765 67899999999999999999999999999999999999999988899999999999999
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecc--ccccccccceeecCCCCC--CCCceeee
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSK--FPTKYVQF 156 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~ 156 (294)
|++++..++..|-...+|.+.|.++.|++ ++.+|++++.|.+|++|++. ......+..+++...... ++......
T Consensus 163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred EeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 99999999999999999999999999999 88899999999999999999 566666666666655444 33444444
Q ss_pred ceE-EeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCC-----CCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590 157 PVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYNA 230 (294)
Q Consensus 157 ~~~-~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 230 (294)
|.. ....|..+|.|+.|-|+++++-+.++.|..|.+-..+.. +.......+.+++.+.+.++.+.|+-+....+
T Consensus 242 p~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 544 667899999999999999999999999999998433222 44445667888899999999999988877789
Q ss_pred EEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
||.|...|.|++||++..++....++.+......|+..+|+.||.+|+..++|+.|.-||..+
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 999999999999999998876666666666778899999999999999999999999998653
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-41 Score=239.82 Aligned_cols=246 Identities=27% Similarity=0.394 Sum_probs=217.8
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+.+|..+|+.+-|. |+-. ++++++.|++|++||..+++....+++|.+.|.+++|+. .+.+|++++.|=.+++||.
T Consensus 104 l~g~r~~vt~v~~h--p~~~-~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFH--PSEA-LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhccccceeeeeec--cCce-EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeH
Confidence 45788999999985 7776 899999999999999999999999999999999999999 8999999999999999999
Q ss_pred CC-CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 84 QT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
.+ .++++... +|...|.+++|-| .+.++++++.|.+|+.|++.+ ...+..+.
T Consensus 180 ~~~~~c~ks~~---gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~t-----------------------g~cv~t~~ 232 (406)
T KOG0295|consen 180 DTFFRCIKSLI---GHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDT-----------------------GYCVKTFP 232 (406)
T ss_pred HHHHHHHHHhc---CcccceeeEEEEe-cCCeeeecccccceeEEeccc-----------------------ceeEEecc
Confidence 76 44555555 7999999999999 789999999999999999999 67788999
Q ss_pred cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC-------------
Q 022590 163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH------------- 227 (294)
Q Consensus 163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------- 227 (294)
+|+..|..+..+ |.++++++.|.++++|-+.+.+ +...+..|+.++.+++|.|...
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~---------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ---------CKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCceEEEEEeccch---------hhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 999999999986 8899999999999999998765 4556677788888888887532
Q ss_pred cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 228 YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 228 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+.++.+++.|++|++||+.++. ....+. +|.+.|..++|+|.|+||+++.+|+++++||++.
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~--cL~tL~--ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGM--CLFTLV--GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred ccEEEeecccceEEEEeccCCe--EEEEEe--cccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 2589999999999999999986 444555 8999999999999999999999999999999974
No 18
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.6e-42 Score=245.47 Aligned_cols=235 Identities=22% Similarity=0.367 Sum_probs=204.9
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
+....|+|+.+ .|+ .+++|..|++|+|||..+..+.+.+.+|++.|.|+.|.. +.+++|+.|.+|++||+++
T Consensus 195 e~skgVYClQY---DD~--kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 195 ENSKGVYCLQY---DDE--KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred ccCCceEEEEe---cch--hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC
Confidence 45678999998 455 599999999999999999999999999999999999964 6999999999999999999
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
++++..+- .|...|..+.|+. .++++++.|.++.+||+..... ......+.+|.
T Consensus 267 ge~l~tli---hHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~--------------------it~rrVLvGHr 320 (499)
T KOG0281|consen 267 GEPLNTLI---HHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD--------------------ITLRRVLVGHR 320 (499)
T ss_pred CchhhHHh---hhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH--------------------HHHHHHHhhhh
Confidence 99999887 6999999999963 5799999999999999987321 12234578899
Q ss_pred CceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590 166 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 245 (294)
Q Consensus 166 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 245 (294)
..|+.+.|+..++++++.|.+|++|++.+.+ .++.+.+|...|.++.+. + .++++|+.|.+|++||+
T Consensus 321 AaVNvVdfd~kyIVsASgDRTikvW~~st~e---------fvRtl~gHkRGIAClQYr--~--rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 321 AAVNVVDFDDKYIVSASGDRTIKVWSTSTCE---------FVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDI 387 (499)
T ss_pred hheeeeccccceEEEecCCceEEEEecccee---------eehhhhcccccceehhcc--C--eEEEecCCCceEEEEec
Confidence 9999999999999999999999999999776 688888898888776553 3 68999999999999999
Q ss_pred cCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 246 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
..+. ....++ +|..-|.++.| |.+.+++|+.||+|+|||+..
T Consensus 388 ~~G~--cLRvLe--GHEeLvRciRF--d~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 388 ECGA--CLRVLE--GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred cccH--HHHHHh--chHHhhhheee--cCceeeeccccceEEEEeccc
Confidence 9997 344444 88899999999 456899999999999999864
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-40 Score=260.74 Aligned_cols=203 Identities=24% Similarity=0.408 Sum_probs=190.3
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+-.|.++|+...|+ |+.+ +|++++.|++||+|.+.+...+-.+++|..||.++.|+| .|.++|||+.|++.++|..
T Consensus 447 L~GH~GPVyg~sFs--Pd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFS--PDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWST 522 (707)
T ss_pred eecCCCceeeeeec--cccc-ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeec
Confidence 34899999999998 9998 999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
...++++.+. +|-+.|.|+.|+| +.+++++|+.|.++++||+.+ ...+..+.+
T Consensus 523 d~~~PlRifa---ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~-----------------------G~~VRiF~G 575 (707)
T KOG0263|consen 523 DHNKPLRIFA---GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVST-----------------------GNSVRIFTG 575 (707)
T ss_pred ccCCchhhhc---ccccccceEEECC-cccccccCCCCceEEEEEcCC-----------------------CcEEEEecC
Confidence 9999988888 7999999999999 999999999999999999999 456888899
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
|.++|.+++|+ |.+|++|+.||.|.+||+.+++ .+..+..|.+.++++.|+.++ ..|++|+.|+.|+
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~---------~v~~l~~Ht~ti~SlsFS~dg--~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS---------LVKQLKGHTGTIYSLSFSRDG--NVLASGGADNSVR 644 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc---------chhhhhcccCceeEEEEecCC--CEEEecCCCCeEE
Confidence 99999999997 9999999999999999999876 567777889999999999999 6999999999999
Q ss_pred EEeccCC
Q 022590 242 VWELQSS 248 (294)
Q Consensus 242 i~d~~~~ 248 (294)
+||+...
T Consensus 645 lWD~~~~ 651 (707)
T KOG0263|consen 645 LWDLTKV 651 (707)
T ss_pred EEEchhh
Confidence 9998754
No 20
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.1e-41 Score=248.17 Aligned_cols=251 Identities=20% Similarity=0.388 Sum_probs=210.1
Q ss_pred cccccCceeEEEEEeecC-CCceEEEEeecCCeEEEEEcCC-ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 3 YVDQKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
.+.+|...|+++.|. | .+. +|++++.|+.|+||++-. +++++++.+|..+|.+++|++ ++..+.+++.|+.|++
T Consensus 209 ~~~gH~kgvsai~~f--p~~~h-LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWF--PKKGH-LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKL 284 (503)
T ss_pred eccCCccccchhhhc--cceee-EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeee
Confidence 456899999999998 6 565 999999999999999976 889999999999999999999 9999999999999999
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
||+++|+++..+. ....++|+.|+|++.+.|++|+.|+.|+.||+|. ...+..
T Consensus 285 wDtETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-----------------------~kvvqe 337 (503)
T KOG0282|consen 285 WDTETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-----------------------GKVVQE 337 (503)
T ss_pred eccccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-----------------------hHHHHH
Confidence 9999999999997 6678999999996669999999999999999999 445666
Q ss_pred eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC-----------------------Ccee---------
Q 022590 161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG-----------------------TADI--------- 206 (294)
Q Consensus 161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------------------~~~~--------- 206 (294)
...|-+.|..+.|- +.++++.+.|+.+++|+.+.+....... ....
T Consensus 338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence 77788999999995 8899999999999999998764321100 0000
Q ss_pred -----eeeeecCC--CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEE
Q 022590 207 -----LQKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STIL 278 (294)
Q Consensus 207 -----~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~ 278 (294)
...+.+|. +--..+.||||| .+|++|+.||.+.+||.++.+ ....++ .|.+++..+.|+|.. ..+|
T Consensus 418 ~r~nkkK~feGh~vaGys~~v~fSpDG--~~l~SGdsdG~v~~wdwkt~k--l~~~lk--ah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 418 FRLNKKKRFEGHSVAGYSCQVDFSPDG--RTLCSGDSDGKVNFWDWKTTK--LVSKLK--AHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred cccCHhhhhcceeccCceeeEEEcCCC--CeEEeecCCccEEEeechhhh--hhhccc--cCCcceEEEEecCCCcceeE
Confidence 01112222 234568899999 699999999999999999876 444555 778999999999964 6899
Q ss_pred EeccCCcEEEEe
Q 022590 279 SCCEDGAIWRWD 290 (294)
Q Consensus 279 s~~~dg~i~vw~ 290 (294)
+++.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999996
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=220.22 Aligned_cols=246 Identities=17% Similarity=0.255 Sum_probs=204.2
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc--cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
+.|+..|.+++|+ |.|+ +||+|+.|.++.||.-..+ +++.++.+|...|.|++|++ ++++||+++.|..|-||.
T Consensus 58 ~~hkrsVRsvAws--p~g~-~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 58 DGHKRSVRSVAWS--PHGR-YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWE 133 (312)
T ss_pred ccchheeeeeeec--CCCc-EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEE
Confidence 3799999999998 9999 9999999999999986544 67889999999999999999 999999999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+..+........+.+|...|..+.|+| ...+|++++.|++|++|+-.... .-.....+.
T Consensus 134 ~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dd--------------------dW~c~~tl~ 192 (312)
T KOG0645|consen 134 IDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDD--------------------DWECVQTLD 192 (312)
T ss_pred ecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCC--------------------CeeEEEEec
Confidence 987665555444558999999999999 88899999999999999877311 034577889
Q ss_pred cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590 163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 240 (294)
Q Consensus 163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 240 (294)
+|...|.+++|+ |+.|++++.|++++||-....- -..+...++.+.|. ++ .|++++.|+.|
T Consensus 193 g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~-------------~~~~sr~~Y~v~W~-~~---~IaS~ggD~~i 255 (312)
T KOG0645|consen 193 GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL-------------SGMHSRALYDVPWD-NG---VIASGGGDDAI 255 (312)
T ss_pred CccceEEEEEecCCCceEEEecCCcceEeeeeccCc-------------chhcccceEeeeec-cc---ceEeccCCCEE
Confidence 999999999997 8899999999999999865321 12245668888888 44 79999999999
Q ss_pred EEEeccCC--Cceeeeec-cccccCCCeEEEEEccC-CCEEEEeccCCcEEEEecC
Q 022590 241 FVWELQSS--PPVLIARL-SHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 241 ~i~d~~~~--~~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~~~ 292 (294)
++|.-... ++...... ....|...|++++|.|. ..+|++|+.||.|++|.+.
T Consensus 256 ~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 256 RLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99987653 11111111 24477889999999994 6899999999999999875
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.8e-41 Score=242.89 Aligned_cols=241 Identities=18% Similarity=0.313 Sum_probs=208.8
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
.-+-+|+.+.|. |+|+ .|++|+..|.+.+|+..+-.....++.|..+|+++.|++ ++..+++|+.+|.|++|+...
T Consensus 94 Kvkc~V~~v~Wt--PeGR-RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 94 KVKCPVNVVRWT--PEGR-RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred ccccceeeEEEc--CCCc-eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccch
Confidence 445689999998 9999 999999999999999866666667789999999999999 999999999999999999854
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
.. ++.++. .|...|++++|+| +...|++++.||+|+|||... ..+...+.+|.
T Consensus 170 nn-Vk~~~a--hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~-----------------------~kee~vL~GHg 222 (464)
T KOG0284|consen 170 NN-VKIIQA--HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRM-----------------------PKEERVLRGHG 222 (464)
T ss_pred hh-hHHhhH--hhhhhhheeccCC-CCceeEEecCCCeEEEEeccC-----------------------CchhheeccCC
Confidence 43 344442 3558999999999 777799999999999999998 44455678999
Q ss_pred Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590 166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 243 (294)
Q Consensus 166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~ 243 (294)
-.|.+++|+ ..++++++.|..|++||.+++. ++..+..|...|..+.|+|++ ++|++++.|..++++
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~---------cl~tlh~HKntVl~~~f~~n~--N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS---------CLATLHGHKNTVLAVKFNPNG--NWLLTGSKDQSCKVF 291 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCcc---------hhhhhhhccceEEEEEEcCCC--CeeEEccCCceEEEE
Confidence 999999998 6689999999999999999887 677888899999999999999 799999999999999
Q ss_pred eccCCCceeeeeccccccCCCeEEEEEccC-CCEEEEeccCCcEEEEecC
Q 022590 244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~~~ 292 (294)
|+++.+. +..+. +|+..|++++|+|- ..+|.+|+.||.|..|.+-
T Consensus 292 DiR~mkE--l~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 292 DIRTMKE--LFTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ehhHhHH--HHHhh--cchhhheeeccccccccceeeccCCCceEEEecc
Confidence 9996543 33333 88899999999994 5688899999999999875
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.4e-39 Score=224.53 Aligned_cols=248 Identities=19% Similarity=0.298 Sum_probs=208.6
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC-CccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
+..|++.|+.+.|. |+|. +||+|+.|..|.+|++. ..+-...+++|.++|..+.|.+ +++.+++++.|.+++.||
T Consensus 43 l~gh~geI~~~~F~--P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFH--PDGS-CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEEC--CCCC-eEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEe
Confidence 34899999999998 8998 99999999999999954 4455667889999999999999 999999999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+++|+.++.++ +|..-|+.+.-+..+..++.+++.|+++++||+|+. .++.. .
T Consensus 119 ~~tG~~~rk~k---~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-----------------------~~~~t-~ 171 (338)
T KOG0265|consen 119 AETGKRIRKHK---GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-----------------------EAIKT-F 171 (338)
T ss_pred cccceeeehhc---cccceeeecCccccCCeEEEecCCCceEEEEeeccc-----------------------chhhc-c
Confidence 99999999998 799999999966556678889999999999999972 22222 2
Q ss_pred cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590 163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 240 (294)
Q Consensus 163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 240 (294)
...-.++++.|. ++.+++|+-|+.|++||++... ....+.+|..+|+.+..++++ .++.+-+.|..+
T Consensus 172 ~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d---------~~~~lsGh~DtIt~lsls~~g--s~llsnsMd~tv 240 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND---------GLYTLSGHADTITGLSLSRYG--SFLLSNSMDNTV 240 (338)
T ss_pred ccceeEEEEEecccccceeeccccCceeeeccccCc---------ceEEeecccCceeeEEeccCC--CccccccccceE
Confidence 235567888886 8899999999999999999665 688899999999999999999 589999999999
Q ss_pred EEEeccCCCc--eeeeeccccccC--CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 241 FVWELQSSPP--VLIARLSHAQSK--SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 241 ~i~d~~~~~~--~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
++||++...+ ..+..+....|. .....++|+|++..+.+|+.|..+++||...
T Consensus 241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 9999986543 223333322232 3456789999999999999999999999753
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-39 Score=246.27 Aligned_cols=246 Identities=17% Similarity=0.258 Sum_probs=225.6
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
..+.++|.++.+. |... .++++-.+|.|.|||.++..+++.+.-..-||++..|-+ ..+.+++|+.|..|+||+..
T Consensus 10 ~~rSdRVKsVd~H--PteP-w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 10 QSRSDRVKSVDFH--PTEP-WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hccCCceeeeecC--CCCc-eEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecc
Confidence 3688999999996 8776 999999999999999999999999999999999999999 88999999999999999999
Q ss_pred CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
+++.+..|. .|.+.|.+++.+| ...++++++.|-+|++||.... ......+.+|
T Consensus 86 t~ekV~~Fe---AH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~----------------------wa~~qtfeGH 139 (794)
T KOG0276|consen 86 TGEKVKTFE---AHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENE----------------------WACEQTFEGH 139 (794)
T ss_pred cceeeEEee---ccccceeeeeecC-CCCeEEecCCccEEEEeeccCc----------------------eeeeeEEcCc
Confidence 999999999 7999999999999 7778999999999999999984 4457789999
Q ss_pred CCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 165 SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 165 ~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
...|.+++|+ .+.+++++-|++|++|.+.+.. +..++.+|...|+++.+-+.++..+|++|+.|..|+
T Consensus 140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIK 210 (794)
T ss_pred ceEEEEEEecCCCccceeeeeccccEEEEEcCCCC---------CceeeeccccCcceEEeccCCCcceEEecCCCceEE
Confidence 9999999997 6799999999999999998654 567888999999999999998778999999999999
Q ss_pred EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+||.++.+ ++..+. +|...|..+.|+|.-..+++|++||+++||+..+
T Consensus 211 vWDyQtk~--CV~TLe--GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 211 VWDYQTKS--CVQTLE--GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred EeecchHH--HHHHhh--cccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 99999987 455555 8889999999999999999999999999998654
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.9e-38 Score=251.32 Aligned_cols=246 Identities=25% Similarity=0.391 Sum_probs=208.7
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc-
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV- 83 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~- 83 (294)
+...|.++.|+ ++|+ ++++++.++.+++|+..+.+ ..+.+.+|...|++++|+| ++.++++++.|++|++||+
T Consensus 158 ~~~sv~~~~fs--~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 158 ECPSVTCVDFS--PDGR-ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ccCceEEEEEc--CCCC-eEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeecc
Confidence 47789998887 9999 89999999999999998777 7778889999999999999 8999999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
..+..++.+. +|...|++++|+| .++++++|+.|++|++||++. ..+...+.+
T Consensus 234 ~~~~~~~~l~---gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~-----------------------~~~~~~l~~ 286 (456)
T KOG0266|consen 234 DDGRNLKTLK---GHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRT-----------------------GECVRKLKG 286 (456)
T ss_pred CCCeEEEEec---CCCCceEEEEecC-CCCEEEEecCCCcEEEEeccC-----------------------CeEEEeeec
Confidence 5557888888 7999999999999 669999999999999999998 567889999
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC--CeeEEEEcccCCcceEEEEcCCCe
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGK 239 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~dg~ 239 (294)
|...|++++|+ +++|++++.|+.|++||+.++... +...+..+.. +++.+.|+|++ .+++++..|+.
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~--~~ll~~~~d~~ 357 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNG--KYLLSASLDRT 357 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCC--cEEEEecCCCe
Confidence 99999999997 889999999999999999987621 1233333333 58999999999 69999999999
Q ss_pred EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+++||+............... ...+.+...++.+.++++|+.|+.|++||+.+
T Consensus 358 ~~~w~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTYTGHSNL-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred EEEEEccCCcceeeecccCCc-ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 999999988643333321111 12455556678999999999999999999874
No 26
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-39 Score=253.07 Aligned_cols=250 Identities=20% Similarity=0.329 Sum_probs=200.7
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC--------------------------------c----------
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--------------------------------E---------- 43 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------------------------------~---------- 43 (294)
.|++.|+++.|+ +||+ |||+|+.||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS--~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 265 AHKGAIWAMKFS--HDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred ccCCcEEEEEeC--CCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 899999999998 9999 999999999999998754 0
Q ss_pred ------------------cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEE
Q 022590 44 ------------------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 105 (294)
Q Consensus 44 ------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l 105 (294)
++++.+.+|.+.|.+|.|+. .++|++++.|.+||+|++...+++..|. |.+.|+|+
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~----HndfVTcV 415 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS----HNDFVTCV 415 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe----cCCeeEEE
Confidence 23456789999999999996 5799999999999999999999999998 99999999
Q ss_pred EEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC
Q 022590 106 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 183 (294)
Q Consensus 106 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~ 183 (294)
+|+|.+.++|++|+.||.++||++... .+.....-..-|++++|. |+..++|+.
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~------------------------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDK------------------------KVVDWNDLRDLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcC------------------------eeEeehhhhhhheeEEeccCCceEEEEEe
Confidence 999999999999999999999999972 233333445789999986 999999999
Q ss_pred CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCC
Q 022590 184 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS 263 (294)
Q Consensus 184 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 263 (294)
+|.+++|+....+..... ........+.....|+.+.|.|... ..+++.+.|..|+|||.+..+. +.+++......
T Consensus 472 ~G~C~fY~t~~lk~~~~~-~I~~~~~Kk~~~~rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~~l--v~KfKG~~n~~ 547 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDF-HIRLHNKKKKQGKRITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDKDL--VHKFKGFRNTS 547 (712)
T ss_pred ccEEEEEEccCCeEEEee-eEeeccCccccCceeeeeEecCCCC-CeEEEecCCCceEEEeccchhh--hhhhcccccCC
Confidence 999999999876531110 0000111111233799999998775 4677788999999999987763 33444222233
Q ss_pred CeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 264 PIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 264 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
.-....|+.||++|+++++|..|++|++.
T Consensus 548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 44568899999999999999999999974
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.7e-40 Score=235.80 Aligned_cols=239 Identities=24% Similarity=0.372 Sum_probs=206.9
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
.|-+|.+.|.|+.|. .+ .+++|+.|.+|+|||+++++++.++-+|.+.|..+.|+. .++++++.|.++.+||
T Consensus 232 ~L~GHtGSVLCLqyd----~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWd 303 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYD----ER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWD 303 (499)
T ss_pred hhhcCCCcEEeeecc----ce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEe
Confidence 355899999999984 55 899999999999999999999999999999999999975 6899999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+.....+.....+.||...|+.+.|+ ..++++++.|.+|++|++.+ ...+..+.
T Consensus 304 m~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st-----------------------~efvRtl~ 357 (499)
T KOG0281|consen 304 MASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTST-----------------------CEFVRTLN 357 (499)
T ss_pred ccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccc-----------------------eeeehhhh
Confidence 98765443333344899999999996 35999999999999999999 66688899
Q ss_pred cCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 163 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 163 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
+|...|.|+.+.+.++++|+.|.+|++||+..+. +++.+++|+.-|.++.|... .+++|..||.|++
T Consensus 358 gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~---------cLRvLeGHEeLvRciRFd~k----rIVSGaYDGkikv 424 (499)
T KOG0281|consen 358 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA---------CLRVLEGHEELVRCIRFDNK----RIVSGAYDGKIKV 424 (499)
T ss_pred cccccceehhccCeEEEecCCCceEEEEeccccH---------HHHHHhchHHhhhheeecCc----eeeeccccceEEE
Confidence 9999999999999999999999999999999776 67888999999999999754 5999999999999
Q ss_pred EeccCCCce-------eeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 243 WELQSSPPV-------LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 243 ~d~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
||+...... .... ...|.+.|-.+.|. ...+++++.|.+|.|||+.
T Consensus 425 Wdl~aaldpra~~~~~Cl~~--lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRT--LVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred EecccccCCcccccchHHHh--hhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 999876422 2222 33677889999994 5679999999999999985
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.2e-37 Score=262.33 Aligned_cols=251 Identities=20% Similarity=0.324 Sum_probs=209.0
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
...|.+++|++ +++. +|++++.||+|++||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.||+|++||+.++.
T Consensus 532 ~~~v~~l~~~~-~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 532 RSKLSGICWNS-YIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred cCceeeEEecc-CCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 46788999973 3455 899999999999999999999999999999999999997678899999999999999999998
Q ss_pred eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590 88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (294)
.+..+. +...+.++.|++.++.+|++|+.||.|++||++.. ..+...+.+|...
T Consensus 610 ~~~~~~----~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~----------------------~~~~~~~~~h~~~ 663 (793)
T PLN00181 610 SIGTIK----TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP----------------------KLPLCTMIGHSKT 663 (793)
T ss_pred EEEEEe----cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----------------------CccceEecCCCCC
Confidence 888876 44689999997657899999999999999999862 1234556789999
Q ss_pred eeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590 168 VDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 246 (294)
Q Consensus 168 i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 246 (294)
|.++.|. +.++++++.|+.|++||++...... ....+..+..|...+..++|+|++ .+|++|+.|+.|++|+..
T Consensus 664 V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~--~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 664 VSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSD--GYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCC--CEEEEEeCCCEEEEEECC
Confidence 9999996 7899999999999999998542110 123566778888889999999998 699999999999999987
Q ss_pred CCCceeeeecc---------ccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 247 SSPPVLIARLS---------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 247 ~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
...+.....+. ...+...|.+++|+|++..|++|+.||.|+||++
T Consensus 739 ~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 739 FPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 65433222211 1234567999999999999999999999999996
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-37 Score=231.13 Aligned_cols=273 Identities=16% Similarity=0.201 Sum_probs=209.3
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec---ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
+++|..=|+|+.|+ |||. ++++.+.||.|.+||-.+++.+..+. +|.+.|.+++|+| |+..+++++.|.+++|
T Consensus 186 ~r~HskFV~~VRys--PDG~-~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 186 FREHSKFVNCVRYS--PDGS-RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKI 261 (603)
T ss_pred ccccccceeeEEEC--CCCC-eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEE
Confidence 45899999999998 9999 99999999999999999999999987 8999999999999 9999999999999999
Q ss_pred EEcCCCceEEEeecc----------------------------------------CCCCCceeEEEEecCCCceEEeeec
Q 022590 81 WNVQTGICILIFAGA----------------------------------------GGHRNEVLSVDFHPSDIYRIASCGM 120 (294)
Q Consensus 81 wd~~~~~~~~~~~~~----------------------------------------~~~~~~v~~l~~~~~~~~~l~~~~~ 120 (294)
||+.+.+++.++... .+|...|+++..+| ++.+|++|+.
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~Sgsy 340 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSY 340 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeecc
Confidence 999987766554321 28999999999999 8899999999
Q ss_pred CCcEEEEecccccccccc--------------------ceeecCC-----------CC----CCCCceee----------
Q 022590 121 DNTVKIWSMKEFWTYVEK--------------------SFTWTDL-----------PS----KFPTKYVQ---------- 155 (294)
Q Consensus 121 dg~i~~wd~~~~~~~~~~--------------------~~~~~~~-----------~~----~~~~~~~~---------- 155 (294)
||.|.-|+...+...... ...++.. .. ....++..
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a 420 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA 420 (603)
T ss_pred CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence 999999999874433110 0000000 00 00000000
Q ss_pred -----eceEEeecCC--------Cceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590 156 -----FPVFIASVHS--------NYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 220 (294)
Q Consensus 156 -----~~~~~~~~~~--------~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 220 (294)
..+..+..+. -...+++. +++.+++|+.|+.+++|.+...+. ........|..+++.+
T Consensus 421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-------~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-------KEEAKLLEHRAAITDV 493 (603)
T ss_pred EEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-------cceeeeecccCCceEE
Confidence 0011111111 11223333 378999999999999999987652 1233445678899999
Q ss_pred EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 221 KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 221 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+++|++ .+|+++...+.+.+||+.+.+. ..... .-|...|.+++|+|+..++|||+.|-.|.||+++.
T Consensus 494 aySpd~--~yla~~Da~rkvv~yd~~s~~~-~~~~w--~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 494 AYSPDG--AYLAAGDASRKVVLYDVASREV-KTNRW--AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred EECCCC--cEEEEeccCCcEEEEEcccCce-eccee--eeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 999999 6999999999999999999864 22223 36789999999999999999999999999999874
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.2e-38 Score=231.69 Aligned_cols=242 Identities=21% Similarity=0.393 Sum_probs=215.2
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
.+..|+++|.++.|+ .+|. ||++++.|+++.+||..++...+.+..|..+-..+.|-. ..-+++++.|+.|+|+.
T Consensus 271 tl~~HkgPI~slKWn--k~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~k 345 (524)
T KOG0273|consen 271 TLGQHKGPIFSLKWN--KKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCK 345 (524)
T ss_pred hhhccCCceEEEEEc--CCCC-EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEE
Confidence 456899999999998 8898 999999999999999999999999999998888899975 45799999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+....++.++. +|.++|.+|.|+| .+.+|++++.|+++++|.... ......+.
T Consensus 346 v~~~~P~~t~~---GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~-----------------------~~~~~~l~ 398 (524)
T KOG0273|consen 346 VGEDRPVKTFI---GHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQ-----------------------SNSVHDLQ 398 (524)
T ss_pred ecCCCcceeee---cccCceEEEEECC-CCceEEEecCCCeeEeeecCC-----------------------Ccchhhhh
Confidence 99999999999 7999999999999 999999999999999999887 34456677
Q ss_pred cCCCceeeccee-----------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590 163 VHSNYVDCNRWL-----------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 231 (294)
Q Consensus 163 ~~~~~i~~~~~~-----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 231 (294)
.|...|..+.|+ +..+++++.|++|++||+..+. ++..+..|..+|++++|+|++ .++
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---------~i~~f~kH~~pVysvafS~~g--~yl 467 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---------PIHTLMKHQEPVYSVAFSPNG--RYL 467 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---------eeEeeccCCCceEEEEecCCC--cEE
Confidence 788777777775 4589999999999999999776 688898999999999999999 699
Q ss_pred EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
|+|+.||.|.+|+.++++. .... ...+.|..++|+.+|.+|..+-.||.+++-|++
T Consensus 468 AsGs~dg~V~iws~~~~~l--~~s~---~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKL--VKSY---QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EecCCCCeeEeccccchhe--eEee---cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999873 3333 233569999999999999999999999999986
No 31
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.4e-37 Score=211.65 Aligned_cols=244 Identities=23% Similarity=0.386 Sum_probs=206.0
Q ss_pred cccccCceeEEEEEeecCC-CceEEEEeecCCeEEEEEcCCc---ccccee-cccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590 3 YVDQKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNE---KLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDES 77 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~---~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 77 (294)
++..|.+++..++|+ |. |. +||+++.|..|++|+...+ .+...+ .+|+..|++++|+| .+++|++|+.|.+
T Consensus 9 ~~~gh~~r~W~~awh--p~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t 84 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWH--PGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDAT 84 (312)
T ss_pred eecCCCCcEEEEEec--cCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccce
Confidence 567899999999998 66 77 9999999999999998743 222223 47999999999999 9999999999999
Q ss_pred EEEEEcCCC--ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590 78 VRLWNVQTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 155 (294)
Q Consensus 78 i~vwd~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (294)
+.||.-..+ +++..+. ||...|.+++|++ ++++||+++.|..+-+|.+..... -
T Consensus 85 ~~Iw~k~~~efecv~~lE---GHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE--------------------f 140 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLE---GHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE--------------------F 140 (312)
T ss_pred EEEeecCCCceeEEeeee---ccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc--------------------E
Confidence 999987654 4556666 8999999999999 999999999999999999985221 2
Q ss_pred eceEEeecCCCceeecceec--ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590 156 FPVFIASVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 233 (294)
Q Consensus 156 ~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 233 (294)
.....+..|...|..+.|++ ++|++++.|.+|++|+-.... ...+.+.+..+...+.+++|.+.| ..|++
T Consensus 141 ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd------dW~c~~tl~g~~~TVW~~~F~~~G--~rl~s 212 (312)
T KOG0645|consen 141 ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD------DWECVQTLDGHENTVWSLAFDNIG--SRLVS 212 (312)
T ss_pred EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC------CeeEEEEecCccceEEEEEecCCC--ceEEE
Confidence 34567888999999999995 899999999999999877432 667899999999999999999999 58999
Q ss_pred EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
++.|++++||..... ++ ..|..++..++|. ...|++++.|+.|++|.-.
T Consensus 213 ~sdD~tv~Iw~~~~~-------~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTD-------LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ecCCcceEeeeeccC-------cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 999999999997632 11 1455779999998 4589999999999999754
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-38 Score=227.06 Aligned_cols=244 Identities=20% Similarity=0.348 Sum_probs=218.8
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 81 (294)
.|+.|.+.|..++|. ..|+ ++++++.|=.+++||.++ .++++.+.+|...|.+++|-| .+.++++++.|.+|+.|
T Consensus 145 ~LrGHt~sv~di~~~--a~Gk-~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~W 220 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFD--ASGK-YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAW 220 (406)
T ss_pred hhhccccceeEEEEe--cCcc-EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEE
Confidence 467899999999997 7888 999999998899999987 577888899999999999999 78999999999999999
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
++.++.++..+. +|...|..++.+. ++.++++++.|.++++|-+.+ ......+
T Consensus 221 e~~tg~cv~t~~---~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t-----------------------~~~k~~l 273 (406)
T KOG0295|consen 221 ECDTGYCVKTFP---GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT-----------------------KQCKAEL 273 (406)
T ss_pred ecccceeEEecc---CchHhEEEEEecC-CeeEEEecCCCceEEEEEecc-----------------------chhhhhh
Confidence 999999999999 7999999999998 999999999999999999998 3344556
Q ss_pred ecCCCceeeccee------------c-----ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590 162 SVHSNYVDCNRWL------------G-----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 224 (294)
Q Consensus 162 ~~~~~~i~~~~~~------------~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 224 (294)
..|+.+|.+++|- + .++.+++.|++|++||+.++. ++.++.+|...|..++|+|
T Consensus 274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---------cL~tL~ghdnwVr~~af~p 344 (406)
T KOG0295|consen 274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---------CLFTLVGHDNWVRGVAFSP 344 (406)
T ss_pred hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe---------EEEEEecccceeeeeEEcC
Confidence 6777777777772 2 489999999999999999775 7999999999999999999
Q ss_pred cCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 225 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 225 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
.| .||+++.+|+++++||+++.+ +...+. .|..-++++.|+.+-.+++||+-|..+++|.-+
T Consensus 345 ~G--kyi~ScaDDktlrvwdl~~~~--cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 345 GG--KYILSCADDKTLRVWDLKNLQ--CMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 406 (406)
T ss_pred CC--eEEEEEecCCcEEEEEeccce--eeeccC--CCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence 99 599999999999999999987 445555 777889999999999999999999999999753
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9e-38 Score=213.51 Aligned_cols=230 Identities=20% Similarity=0.298 Sum_probs=191.9
Q ss_pred eEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc--eEEEeeccCCCCCc
Q 022590 24 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRNE 101 (294)
Q Consensus 24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~ 101 (294)
-+|++++.|.+||+|...+|.+.++++...+.|+.+...| ++..||+++. ..||+||+++++ ++..|. +|...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e---~h~kN 85 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFE---GHTKN 85 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEe---ccCCc
Confidence 3899999999999999999999999998888999999999 8888888876 689999999875 467777 79999
Q ss_pred eeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEE
Q 022590 102 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 179 (294)
Q Consensus 102 v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 179 (294)
|+++.|.. +++.+++|++||+++|||+|... ......|..+|+++..+ ...|+
T Consensus 86 VtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~------------------------~qR~~~~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 86 VTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLS------------------------CQRNYQHNSPVNTVVLHPNQTELI 140 (311)
T ss_pred eEEEEEee-cCeEEEecCCCceEEEEeccCcc------------------------cchhccCCCCcceEEecCCcceEE
Confidence 99999998 99999999999999999999721 22334466888888876 56899
Q ss_pred EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce--eeeecc
Q 022590 180 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV--LIARLS 257 (294)
Q Consensus 180 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~ 257 (294)
+|..+|.|++||+...... -.-.+.....+.++...|+| .+++.+...|..++|++-..+.. .....+
T Consensus 141 s~dqsg~irvWDl~~~~c~--------~~liPe~~~~i~sl~v~~dg--sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k 210 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCT--------HELIPEDDTSIQSLTVMPDG--SMLAAANNKGNCYVWRLLNHQTASELEPVHK 210 (311)
T ss_pred eecCCCcEEEEEccCCccc--------cccCCCCCcceeeEEEcCCC--cEEEEecCCccEEEEEccCCCccccceEhhh
Confidence 9999999999999876431 12223345679999999999 58999999999999999764321 112222
Q ss_pred ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 258 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 258 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
...|.+.+..+.+|||+++||++|.|.+++||+++.
T Consensus 211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred eecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 458889999999999999999999999999999864
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-38 Score=251.35 Aligned_cols=255 Identities=21% Similarity=0.384 Sum_probs=224.3
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
++....+|..++|. |... .++++-..|.|++||..-+.++..|..|.++|..++|+| ...++++|+.|..|+||+.
T Consensus 5 fEskSsRvKglsFH--P~rP-wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFH--PKRP-WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhcccccccceecC--CCCC-EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEec
Confidence 45677889999986 7765 999999999999999999999999999999999999999 8889999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
.+.+++.++. +|-+.|..+.|++ .-..+++++.|.+|++|+..+ +..+..+.+
T Consensus 81 k~rrclftL~---GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqs-----------------------r~~iavltG 133 (1202)
T KOG0292|consen 81 KTRRCLFTLL---GHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQS-----------------------RKCIAVLTG 133 (1202)
T ss_pred ccceehhhhc---cccceeEEeeccC-CCceEEEccCCCeEEEEeccC-----------------------CceEEEEec
Confidence 9999999888 7999999999999 888899999999999999998 677889999
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCC---CC-----------------CCCceeeeeeecCCCCeeEEE
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS---PG-----------------EGTADILQKYPVPECDIWFIK 221 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~---~~-----------------~~~~~~~~~~~~~~~~i~~~~ 221 (294)
|...|.|.+|+ .+.+++++-|.+||+||+...... +. ....-....+.+|...|+.++
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 99999999998 689999999999999999654321 11 001223355678999999999
Q ss_pred EcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 222 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 222 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
|+|.- .++++|+.|..|++|.++..+.-.+.... +|.+.|.++-|+|...++++.|+|+.|+|||+..
T Consensus 214 fhpTl--pliVSG~DDRqVKlWrmnetKaWEvDtcr--gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 214 FHPTL--PLIVSGADDRQVKLWRMNETKAWEVDTCR--GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ecCCc--ceEEecCCcceeeEEEeccccceeehhhh--cccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 99988 69999999999999999887644444444 8999999999999999999999999999999863
No 35
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1e-37 Score=215.28 Aligned_cols=256 Identities=16% Similarity=0.215 Sum_probs=217.4
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
.|..|+.+++-+.++ .+|. +|++++.|.+..||-..+|+.+.++.+|++.|+|+.... +...+++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN--~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYN--REGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEec--CCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEE
Confidence 367999999999998 8999 999999999999999999999999999999999999998 889999999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-----cCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-----MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-----~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
+++|+++..++ ...+|..+.|++ ++++++.+. ..+.|.++|++.... ......|
T Consensus 81 v~tGk~la~~k----~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~----------------~~~s~ep 139 (327)
T KOG0643|consen 81 VETGKQLATWK----TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSS----------------DIDSEEP 139 (327)
T ss_pred cCCCcEEEEee----cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChh----------------hhcccCc
Confidence 99999999998 788999999999 777666654 356799999996321 1112556
Q ss_pred eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590 158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 235 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 235 (294)
...+..+...++.+-|. ++.|++|..||.|..||.+++++ .+.....|...|+.+.++++. .++++++
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--------~v~s~~~h~~~Ind~q~s~d~--T~FiT~s 209 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--------LVDSDEEHSSKINDLQFSRDR--TYFITGS 209 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--------eeechhhhccccccccccCCc--ceEEecc
Confidence 77888888999999997 99999999999999999998764 566667788899999999999 6999999
Q ss_pred CCCeEEEEeccCCCceeeee--------------------------------------------------c-cccccCCC
Q 022590 236 REGKIFVWELQSSPPVLIAR--------------------------------------------------L-SHAQSKSP 264 (294)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~--------------------------------------------------~-~~~~~~~~ 264 (294)
.|.+-++||..+.+...... + ...+|-+|
T Consensus 210 ~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP 289 (327)
T KOG0643|consen 210 KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP 289 (327)
T ss_pred cCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC
Confidence 99999999987643111100 0 01257799
Q ss_pred eEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 265 IRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 265 v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
|++++|+|+|+..++|++||.|++.-++.
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cceeEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999999976643
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=247.87 Aligned_cols=246 Identities=24% Similarity=0.449 Sum_probs=206.4
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEc-CCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV-SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
+.+|...|++++|+ |+|+ ++++++.|++|+|||+ ..+..++++++|...|++++|+| .++++++|+.|++|+|||
T Consensus 199 l~~h~~~v~~~~fs--~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFS--PDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred ccccccceeeeEEC--CCCc-EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEe
Confidence 35799999999998 9998 9999999999999999 55688999999999999999999 669999999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+++++++..+. +|.+.|++++|++ ++++|++++.|+.|++||+.++... ....+.
T Consensus 275 ~~~~~~~~~l~---~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~---------------------~~~~~~ 329 (456)
T KOG0266|consen 275 VRTGECVRKLK---GHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL---------------------CLKLLS 329 (456)
T ss_pred ccCCeEEEeee---ccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee---------------------eeeccc
Confidence 99999999999 7999999999999 9999999999999999999984311 223334
Q ss_pred cCCC--ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC---eeEEEEcccCCcceEEEEc
Q 022590 163 VHSN--YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD---IWFIKFSCDFHYNAAAIGN 235 (294)
Q Consensus 163 ~~~~--~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~l~~~~ 235 (294)
.+.. ++.++.|+ +.++++++.|+.+++||++.+. ....+..+... +.....++.+ .++++|+
T Consensus 330 ~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~i~sg~ 398 (456)
T KOG0266|consen 330 GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK---------SVGTYTGHSNLVRCIFSPTLSTGG--KLIYSGS 398 (456)
T ss_pred CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc---------ceeeecccCCcceeEecccccCCC--CeEEEEe
Confidence 4444 48888886 8899999999999999999775 34445555443 3333445555 6999999
Q ss_pred CCCeEEEEeccCCCceeeeecccccc-CCCeEEEEEccCCCEEEEec--cCCcEEEEecCC
Q 022590 236 REGKIFVWELQSSPPVLIARLSHAQS-KSPIRQTAMSYDGSTILSCC--EDGAIWRWDAIP 293 (294)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~vw~~~~ 293 (294)
.|+.|++||+.+.. ....+. +| ...+..+.++|..+++++++ .|+.+++|....
T Consensus 399 ~d~~v~~~~~~s~~--~~~~l~--~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 399 EDGSVYVWDSSSGG--ILQRLE--GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred CCceEEEEeCCccc--hhhhhc--CCCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 99999999999865 333443 56 78899999999999999998 789999998753
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.7e-37 Score=219.42 Aligned_cols=253 Identities=18% Similarity=0.286 Sum_probs=211.6
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 81 (294)
.+++.|.++|++++.+ |+.+ ++++|+.|..-.+|+..++.....+.+|.+.|+++.|+. ++.+||+|+.+|.|+||
T Consensus 58 ~tF~~H~~svFavsl~--P~~~-l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLH--PNNN-LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVF 133 (399)
T ss_pred eehhhcCCceEEEEeC--CCCc-eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEE
Confidence 4677999999999997 7666 999999999999999999999999999999999999999 99999999999999999
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
...++.....+. ..-..+.=+.|+| ...+|+.|+.||.+.+|.+.. +.....+
T Consensus 134 ~~stg~~~~~~~---~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~-----------------------~~~~kv~ 186 (399)
T KOG0296|consen 134 KVSTGGEQWKLD---QEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPS-----------------------QALCKVM 186 (399)
T ss_pred EcccCceEEEee---cccCceEEEEecc-cccEEEeecCCCcEEEEECCC-----------------------cceeeEe
Confidence 999998888776 3566788899999 999999999999999999998 3446677
Q ss_pred ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC-------------------------------------
Q 022590 162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG------------------------------------- 202 (294)
Q Consensus 162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------------------- 202 (294)
.+|..++++-.|. |+.++++..||+|++||+.+++......
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence 8888888888775 8889999999999999988775420000
Q ss_pred -------------------------------------------------CceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590 203 -------------------------------------------------TADILQKYPVPECDIWFIKFSCDFHYNAAAI 233 (294)
Q Consensus 203 -------------------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 233 (294)
....++..-.|..+|..+.|-+. .+|++
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t---~~l~t 343 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNT---DYLLT 343 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCc---chhee
Confidence 00011222334556777788773 48999
Q ss_pred EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
++.+|.|+.||.++++.+. .+. +|..+|.+++++|+.++++|+|.|+..+||++.
T Consensus 344 ~c~~g~v~~wDaRtG~l~~--~y~--GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 344 ACANGKVRQWDARTGQLKF--TYT--GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eccCceEEeeeccccceEE--EEe--cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999997433 333 999999999999999999999999999999864
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=240.32 Aligned_cols=248 Identities=17% Similarity=0.299 Sum_probs=210.9
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
+.|...+++++++ |||+ ++|+|+.||.|+|||...+-+..++..|+..|+.+.|+. .++.+++.+-||+|+.||+.
T Consensus 347 QgH~~~i~~l~YS--pDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 347 QGHSDRITSLAYS--PDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred cccccceeeEEEC--CCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeec
Confidence 4789999999998 9999 999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
.....++|.. ...-...|++..| .+.++.+|+.|. .|.+|++++ ...+..+.+
T Consensus 423 RYrNfRTft~--P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qT-----------------------GqllDiLsG 476 (893)
T KOG0291|consen 423 RYRNFRTFTS--PEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQT-----------------------GQLLDILSG 476 (893)
T ss_pred ccceeeeecC--CCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeec-----------------------CeeeehhcC
Confidence 9999999885 2344568899999 888888888876 599999999 556788999
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
|+++|.+++|+ ++.|++++.|.+|++||+-.... ....++. ...+..++|.|+| ..+++++.||.|.
T Consensus 477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--------~vEtl~i-~sdvl~vsfrPdG--~elaVaTldgqIt 545 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--------TVETLEI-RSDVLAVSFRPDG--KELAVATLDGQIT 545 (893)
T ss_pred CCCcceeeEEccccCeEEeccccceEEEEEeeccCc--------eeeeEee-ccceeEEEEcCCC--CeEEEEEecceEE
Confidence 99999998887 89999999999999999976432 2333333 4568899999999 5899999999999
Q ss_pred EEeccCCCcee----------------eeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 242 VWELQSSPPVL----------------IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 242 i~d~~~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+||.+...... ...........+.+.+++++||.++++|+....|++|++.+
T Consensus 546 f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 546 FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred EEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 99987653210 01111223446899999999999999999999999999865
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4e-36 Score=228.53 Aligned_cols=245 Identities=26% Similarity=0.472 Sum_probs=209.0
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
.++.|.++|++++|+ |+++ +|++++.||.|++|++.+++....+..|...+..+.|+| +++++++++.||.|++|+
T Consensus 4 ~~~~h~~~i~~~~~~--~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFS--PDGK-LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEc--CCCC-EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEE
Confidence 466899999999998 8888 999999999999999999888888899999999999999 778999999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+.+++.+..+. .|...+.++.|+| ++.++++++.|+.+++||+++ ......+.
T Consensus 80 ~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-----------------------~~~~~~~~ 132 (289)
T cd00200 80 LETGECVRTLT---GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVET-----------------------GKCLTTLR 132 (289)
T ss_pred cCcccceEEEe---ccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCC-----------------------cEEEEEec
Confidence 99888777777 6888999999999 678888888899999999986 33445556
Q ss_pred cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590 163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 240 (294)
Q Consensus 163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 240 (294)
.|...+.++.|+ +.++++++.++.|++||++.++ ....+..+...+.++.|+|++ ..+++++.+|.|
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i 201 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---------CVATLTGHTGEVNSVAFSPDG--EKLLSSSSDGTI 201 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc---------cceeEecCccccceEEECCCc--CEEEEecCCCcE
Confidence 788899999997 4677777779999999998654 345556777789999999998 578888889999
Q ss_pred EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
++||++..+. ...+. .|..++.+++|+|++.++++++.||.|++||+.+
T Consensus 202 ~i~d~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 202 KLWDLSTGKC--LGTLR--GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred EEEECCCCce--ecchh--hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 9999988653 33332 5567899999999999999998899999999863
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=215.85 Aligned_cols=247 Identities=20% Similarity=0.383 Sum_probs=213.7
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
.++.|+++|..+.|. +|++ .+++++.|.+|+.||.++|+.++.+++|.+-|+++.-+..+..++.+++.||++++||
T Consensus 85 ~lkgHsgAVM~l~~~--~d~s-~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGM--RDGS-HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred eeccccceeEeeeec--cCCC-EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence 456899999999998 8998 9999999999999999999999999999999999986655667899999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+++.+.++.+. .+-+++++.|.. .+..+.+|+-|+.|++||++. ......+.
T Consensus 162 ~R~k~~~~t~~----~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~-----------------------~d~~~~ls 213 (338)
T KOG0265|consen 162 IRKKEAIKTFE----NKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK-----------------------NDGLYTLS 213 (338)
T ss_pred ecccchhhccc----cceeEEEEEecc-cccceeeccccCceeeecccc-----------------------CcceEEee
Confidence 99999988886 677899999997 778899999999999999998 55688999
Q ss_pred cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC----CCeeEEEEcccCCcceEEEEcC
Q 022590 163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE----CDIWFIKFSCDFHYNAAAIGNR 236 (294)
Q Consensus 163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~~~~~ 236 (294)
+|.++|+.+..+ |.++.+-+.|.++++||++.... ...++..+.++. .....++|+|++ ..+.+|+.
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-----~~R~v~if~g~~hnfeknlL~cswsp~~--~~i~ags~ 286 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-----SQRCVKIFQGHIHNFEKNLLKCSWSPNG--TKITAGSA 286 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCC-----CCceEEEeecchhhhhhhcceeeccCCC--Cccccccc
Confidence 999999999886 89999999999999999986542 222344444432 335567899988 68999999
Q ss_pred CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
|..+++||..... ....++ +|.+.|++++|+|...+|.+++.|.+|++=++
T Consensus 287 dr~vyvwd~~~r~--~lyklp--Gh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 287 DRFVYVWDTTSRR--ILYKLP--GHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred cceEEEeeccccc--EEEEcC--CcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999998864 555665 99999999999999999999999999987443
No 41
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-38 Score=228.15 Aligned_cols=270 Identities=20% Similarity=0.322 Sum_probs=202.9
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---cccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 79 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 79 (294)
.+.+|.+.|+-+.|+ ++|+ +||+++.|.+..+|++... +..+++.+|..+|..+.|+| |.++|++|+.|..+.
T Consensus 219 il~~htdEVWfl~FS--~nGk-yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFS--HNGK-YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEc--CCCe-eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHhee
Confidence 356899999999998 9999 9999999999999998654 34778899999999999999 889999999999999
Q ss_pred EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccc----------ceeecCCCCC-
Q 022590 80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK----------SFTWTDLPSK- 148 (294)
Q Consensus 80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----------~~~~~~~~~~- 148 (294)
+||+.+|.....+.. ++...+.+.+|.| ++..+++|+.|+.+..||+.......=. .++.++....
T Consensus 295 lwDv~tgd~~~~y~~--~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPS--GLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLL 371 (519)
T ss_pred eccCCcchhhhhccc--CcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEE
Confidence 999999999888874 4668899999999 8899999999999999999873211100 0000000000
Q ss_pred --CCCceee----ece-EEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590 149 --FPTKYVQ----FPV-FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 219 (294)
Q Consensus 149 --~~~~~~~----~~~-~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (294)
....... ..+ ..+..-..+|++++.+ +.++++.-.+..+++||++... .++++.+|...-.-
T Consensus 372 v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~---------lv~kY~Ghkq~~fi 442 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK---------LVRKYFGHKQGHFI 442 (519)
T ss_pred EecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh---------HHHHhhcccccceE
Confidence 0000000 000 0122234567777665 7788888899999999998544 45666666544333
Q ss_pred E--EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecCC
Q 022590 220 I--KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 220 ~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~ 293 (294)
+ +|.-... .++++|++|+.|+||+..+++ ....+. +|...|++++|+|.. .++|+||.||+|+||...+
T Consensus 443 IrSCFgg~~~-~fiaSGSED~kvyIWhr~sgk--ll~~Ls--GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 443 IRSCFGGGND-KFIASGSEDSKVYIWHRISGK--LLAVLS--GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEeccCCCCc-ceEEecCCCceEEEEEccCCc--eeEeec--CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 3 3333222 699999999999999999997 444555 899999999999954 6889999999999998763
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.8e-36 Score=254.27 Aligned_cols=243 Identities=16% Similarity=0.274 Sum_probs=197.9
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----c----ccceecccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----K----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDES 77 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 77 (294)
.|.+.|.+++|+ |+|+ ++|+|+.|+.|+||+.... . +...+. +...|.+++|++..+.+|++++.||+
T Consensus 481 ~~~~~V~~i~fs--~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 481 NSSNLVCAIGFD--RDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred CCCCcEEEEEEC--CCCC-EEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 488999999998 8998 9999999999999997542 1 112233 35689999999866789999999999
Q ss_pred EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
|++||+.+++.+..+. +|...|++++|+|.++.+|++|+.||.|++||+++. ..
T Consensus 557 v~lWd~~~~~~~~~~~---~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-----------------------~~ 610 (793)
T PLN00181 557 VQVWDVARSQLVTEMK---EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-----------------------VS 610 (793)
T ss_pred EEEEECCCCeEEEEec---CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-----------------------cE
Confidence 9999999998888877 799999999999767889999999999999999873 22
Q ss_pred eEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590 158 VFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 234 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 234 (294)
...+.. ...+.++.|. +.+|++|+.||.|++||++.... .+..+..|...|..+.|. ++ .+++++
T Consensus 611 ~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--------~~~~~~~h~~~V~~v~f~-~~--~~lvs~ 678 (793)
T PLN00181 611 IGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--------PLCTMIGHSKTVSYVRFV-DS--STLVSS 678 (793)
T ss_pred EEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--------cceEecCCCCCEEEEEEe-CC--CEEEEE
Confidence 333333 3567888884 78999999999999999986532 344556788899999997 44 589999
Q ss_pred cCCCeEEEEeccCCC----ceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 235 NREGKIFVWELQSSP----PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 235 ~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
+.|+.|++||++... ......+. +|...+..++|+|++++|++|+.||.|++|+..
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 999999999997532 11233333 778889999999999999999999999999964
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.4e-36 Score=224.35 Aligned_cols=281 Identities=17% Similarity=0.234 Sum_probs=220.0
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+..|...|++++|- |.....+++|+.|++|.+|+-.--+...++..|..-|+|+.|+| ++.++++++.||+|.+||-
T Consensus 143 i~GhSr~ins~~~K--psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 143 ITGHSRRINSVDFK--PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDG 219 (603)
T ss_pred eeccceeEeeeecc--CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcC
Confidence 46899999999998 66666899999999999999777777788889999999999999 8999999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeec-----------C--------
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT-----------D-------- 144 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----------~-------- 144 (294)
.+++.+..+....+|++.|.+|+|+| ++..+++++.|.++++||+.+.....+...... .
T Consensus 220 ktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 220 KTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred CCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 99999999987778999999999999 889999999999999999988533222111111 0
Q ss_pred --CCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC--CCceee-----------
Q 022590 145 --LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE--GTADIL----------- 207 (294)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~----------- 207 (294)
...-.... ...+...+.+|...|+++..+ +.+|++|+.||.|.-||..++...... .+...+
T Consensus 299 ~G~in~ln~~-d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 299 SGTINYLNPS-DPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred CcEEEEeccc-CCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 00000111 122567788999999999987 789999999999999999876543110 000000
Q ss_pred ---------ee------------------------------------------ee--------cCCCCeeEEEEcccCCc
Q 022590 208 ---------QK------------------------------------------YP--------VPECDIWFIKFSCDFHY 228 (294)
Q Consensus 208 ---------~~------------------------------------------~~--------~~~~~i~~~~~~~~~~~ 228 (294)
+. +. ...-...+++++|++
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-- 455 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-- 455 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC--
Confidence 00 00 001133567788888
Q ss_pred ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
..+++|+.||.|++|.+...+........ .|.++|+++++|||+.|||+|...+.+.+||+.+
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~--~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLL--EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeee--cccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 58999999999999999987644443433 7889999999999999999999999999999875
No 44
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=235.48 Aligned_cols=241 Identities=23% Similarity=0.407 Sum_probs=204.5
Q ss_pred cCceeEEEEEeecCCCceEEEEeecC-CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGIN-GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
.+.+|..++|+ ..|. .||.|+.. |.+.||+..+...+...++|...+++++++| |++++|+|+.||.|+|||..+
T Consensus 306 s~~~I~t~~~N--~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 306 SDQKILTVSFN--STGD-WIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred ccceeeEEEec--ccCC-EEEEcCCccceEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccC
Confidence 45678888887 7788 89988766 8999999999998889999999999999999 999999999999999999999
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec-C
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-H 164 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 164 (294)
+-+..+|. .|++.|+.+.|+. .++.+++++.||+|+.||+..... ..++.. .
T Consensus 382 gfC~vTFt---eHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrN-----------------------fRTft~P~ 434 (893)
T KOG0291|consen 382 GFCFVTFT---EHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRN-----------------------FRTFTSPE 434 (893)
T ss_pred ceEEEEec---cCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccce-----------------------eeeecCCC
Confidence 99999999 6999999999998 999999999999999999987432 111111 2
Q ss_pred CCceeeccee--cceEEEeeCCC-eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 165 SNYVDCNRWL--GDFILSKSVDN-EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 165 ~~~i~~~~~~--~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
+....|++.+ |..+.+|+.|. .|.+|++++++ .+..+.+|+++|.+++|+|.+ ..|++++.|.+|+
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---------llDiLsGHEgPVs~l~f~~~~--~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---------LLDILSGHEGPVSGLSFSPDG--SLLASGSWDKTVR 503 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---------eeehhcCCCCcceeeEEcccc--CeEEeccccceEE
Confidence 2334455554 88888888876 49999999887 688889999999999999999 5999999999999
Q ss_pred EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+||+-.... ....+ .+...+..++|.|+|+-|+++.-||.|.+||++.
T Consensus 504 iW~if~s~~-~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 504 IWDIFSSSG-TVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred EEEeeccCc-eeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 999976532 12222 3335699999999999999999999999999864
No 45
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-37 Score=227.57 Aligned_cols=255 Identities=17% Similarity=0.262 Sum_probs=213.7
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc----------ccceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----------LHKSFVGHGDSINEIRTQPLKPSLVVSASKD 75 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 75 (294)
-|.+.|+.+... |....++|+++..+.|.|||..+.. +-.++.+|.+.-.+|+|+++..-.|++++.|
T Consensus 122 ~h~gEVnRaRym--PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYM--PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhC--CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 688999999998 6565589999999999999986431 2237889999889999999888899999999
Q ss_pred CcEEEEEcCCCce----EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590 76 ESVRLWNVQTGIC----ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 151 (294)
Q Consensus 76 g~i~vwd~~~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
++|++||+..... +.....+.+|...|..++|++....+|++++.|+.+.|||+|+..
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------------------ 261 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------------------ 261 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC------------------
Confidence 9999999975432 222222338999999999999889999999999999999999621
Q ss_pred ceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCc
Q 022590 152 KYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 228 (294)
Q Consensus 152 ~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (294)
..+.....+|.+.|.|++|+ +..||+|+.|++|++||+|+... .+..+..|...|..+.|+|...
T Consensus 262 ---~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--------~lh~~e~H~dev~~V~WSPh~e- 329 (422)
T KOG0264|consen 262 ---SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--------PLHTFEGHEDEVFQVEWSPHNE- 329 (422)
T ss_pred ---CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--------CceeccCCCcceEEEEeCCCCC-
Confidence 44556678899999999997 78999999999999999998764 7888999999999999999987
Q ss_pred ceEEEEcCCCeEEEEeccCCCce----------eeeeccccccCCCeEEEEEccCCCE-EEEeccCCcEEEEecC
Q 022590 229 NAAAIGNREGKIFVWELQSSPPV----------LIARLSHAQSKSPIRQTAMSYDGST-ILSCCEDGAIWRWDAI 292 (294)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~vw~~~ 292 (294)
..|++++.|+.+.+||+..-... ....+.|.+|...|..+.|+|+..+ +++.++|+.+.||+..
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 79999999999999999753211 2334557799999999999998765 5678999999999875
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-36 Score=241.09 Aligned_cols=267 Identities=18% Similarity=0.267 Sum_probs=219.5
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+++|+++|..++|. |.+. ++++|+.|-.|+||+.++.+++.++.+|-+-|..+.|++ .-..+++++.|.+|+||+.
T Consensus 47 FdeHdGpVRgv~FH--~~qp-lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFH--PTQP-LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNW 122 (1202)
T ss_pred hhccCCccceeeec--CCCC-eEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEec
Confidence 56999999999996 8887 999999999999999999999999999999999999999 8889999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC------Cceeeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP------TKYVQFP 157 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 157 (294)
.+++++..+. ||...|.|..|+| ...++++++.|.+||+||+...+.........+....... ...-...
T Consensus 123 qsr~~iavlt---GHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 123 QSRKCIAVLT---GHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred cCCceEEEEe---cCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 9999999999 7999999999999 8889999999999999999874433222221111111110 1111223
Q ss_pred eEEeecCCCceeecceec--ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590 158 VFIASVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 235 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 235 (294)
...+.+|...|+-++|++ .++++|+.|+.|++|.+...+. -.+....+|...|.++-|+|.. +++++.+
T Consensus 199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q--~lIlSns 269 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ--DLILSNS 269 (1202)
T ss_pred eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc--ceeEecC
Confidence 457899999999999996 7999999999999999875431 1345566788999999999988 6999999
Q ss_pred CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 236 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
+|+.|++||+...+.+...+.. ......++-+|..+++++| .|+-+.||.++
T Consensus 270 EDksirVwDm~kRt~v~tfrre----ndRFW~laahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRTSVQTFRRE----NDRFWILAAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred CCccEEEEecccccceeeeecc----CCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence 9999999999988765555433 3568899999999988877 45557777775
No 47
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-37 Score=235.01 Aligned_cols=240 Identities=23% Similarity=0.427 Sum_probs=210.6
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
++..+.||.+..|- +.-+ .+++|+.|..|+||+..+++.++.|.+|.+-|++++.+| ...++++++.|-+|++||.
T Consensus 51 feV~~~PvRa~kfi--aRkn-Wiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 51 FEVSEVPVRAAKFI--ARKN-WIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred eeecccchhhheee--eccc-eEEEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeec
Confidence 34566788888886 4444 999999999999999999999999999999999999999 6779999999999999999
Q ss_pred CCC-ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 84 QTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 84 ~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+.+ .+.+.|. +|...|.+++|+|.+.+.+++++.|++|++|.+.+ ..|..++.
T Consensus 127 e~~wa~~qtfe---GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-----------------------~~~nfTl~ 180 (794)
T KOG0276|consen 127 ENEWACEQTFE---GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-----------------------PHPNFTLE 180 (794)
T ss_pred cCceeeeeEEc---CcceEEEEEEecCCCccceeeeeccccEEEEEcCC-----------------------CCCceeee
Confidence 754 5666777 89999999999999999999999999999999998 67888999
Q ss_pred cCCCceeeccee-c---ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590 163 VHSNYVDCNRWL-G---DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 238 (294)
Q Consensus 163 ~~~~~i~~~~~~-~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 238 (294)
+|...|+|+.|- + .+|++|+.|.++++||.++.. +++.+.+|...|..+.|+|.- .++++|++||
T Consensus 181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~---------CV~TLeGHt~Nvs~v~fhp~l--piiisgsEDG 249 (794)
T KOG0276|consen 181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS---------CVQTLEGHTNNVSFVFFHPEL--PIIISGSEDG 249 (794)
T ss_pred ccccCcceEEeccCCCcceEEecCCCceEEEeecchHH---------HHHHhhcccccceEEEecCCC--cEEEEecCCc
Confidence 999999999995 3 499999999999999999765 789999999999999999998 6999999999
Q ss_pred eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEE
Q 022590 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 288 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 288 (294)
+++||+..+.+... .+. -....+.+++-.+.++.++.|..+|.|.+
T Consensus 250 TvriWhs~Ty~lE~--tLn--~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 250 TVRIWNSKTYKLEK--TLN--YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEecCcceehhh--hhh--cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999998875333 332 22357999999998888999988887654
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.5e-38 Score=214.51 Aligned_cols=254 Identities=19% Similarity=0.328 Sum_probs=214.4
Q ss_pred cccCceeEEEEEee-cCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 5 DQKEESFYTVSWAC-NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 5 ~~h~~~v~~~~~~~-~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
..|..+|-.++|++ .|+|- +|++++.||.-.+-+-++|.-+.+|.+|.++|.+..... +....++++.|-+-++||.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDA 88 (334)
T ss_pred cCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhh
Confidence 37999999999995 56786 999999999999999999999999999999999999998 7788899999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
-+|..+..|. |..-|.+++|+. +.++|++|+.+..+++||++.. ..|...+.+
T Consensus 89 ~tgdelhsf~----hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p----------------------~App~E~~g 141 (334)
T KOG0278|consen 89 VTGDELHSFE----HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRP----------------------KAPPKEISG 141 (334)
T ss_pred hhhhhhhhhh----hhheeeeEEecc-cchhhhccchHHHhhhhhccCC----------------------CCCchhhcC
Confidence 9999999997 999999999998 8889999999999999999983 445667889
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC-------------------------------Cceeeeee
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG-------------------------------TADILQKY 210 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------------------~~~~~~~~ 210 (294)
|++.|..+.|. .+.+++++.|++||+||.+++....... ....+..+
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeec
Confidence 99999999997 7788888999999999999886421110 11111222
Q ss_pred ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 211 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
.. .+.|.+..++|+. ..+++|++|+.++.||..+++.+... ..+|.++|.|+.|+|+|...++||+||+|++|.
T Consensus 222 k~-P~nV~SASL~P~k--~~fVaGged~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 222 KM-PCNVESASLHPKK--EFFVAGGEDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred cC-ccccccccccCCC--ceEEecCcceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 22 2346667777776 68999999999999999998744432 248889999999999999999999999999998
Q ss_pred cCC
Q 022590 291 AIP 293 (294)
Q Consensus 291 ~~~ 293 (294)
+.+
T Consensus 296 t~~ 298 (334)
T KOG0278|consen 296 TTP 298 (334)
T ss_pred ecC
Confidence 754
No 49
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=236.34 Aligned_cols=246 Identities=18% Similarity=0.276 Sum_probs=213.0
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 79 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 79 (294)
+.+|++.|.+++.. .+|. +|++|+.|.++++|.++++ .++....+|+..|.+++++.....+|++++.|++++
T Consensus 361 i~GH~e~vlSL~~~--~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVW--SSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred EeCchhheeeeeec--ccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 35899999999933 5676 9999999999999987443 345667899999999999887778999999999999
Q ss_pred EEEcCCCceEE---Ee---eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590 80 LWNVQTGICIL---IF---AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 153 (294)
Q Consensus 80 vwd~~~~~~~~---~~---~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (294)
+|++...+... .+ .....|...|++++.+| +..+++||+.|.+.++|++.+
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~---------------------- 494 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ---------------------- 494 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccC----------------------
Confidence 99997622111 11 01236999999999999 889999999999999999997
Q ss_pred eeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590 154 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 231 (294)
Q Consensus 154 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 231 (294)
......+.+|...|.++.|+ .+.+++++.|++|+||.+.+.. ++.++.+|.+.|..+.|-.++ ..|
T Consensus 495 -~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS---------ClkT~eGH~~aVlra~F~~~~--~ql 562 (775)
T KOG0319|consen 495 -LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS---------CLKTFEGHTSAVLRASFIRNG--KQL 562 (775)
T ss_pred -ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce---------eeeeecCccceeEeeeeeeCC--cEE
Confidence 55678899999999999998 5699999999999999999765 799999999999999999999 589
Q ss_pred EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
++++.||.|++|++++++ +...+. .|...|.+++.+|.+.+++||+.||.|.+|.=
T Consensus 563 iS~~adGliKlWnikt~e--C~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNE--CEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EeccCCCcEEEEeccchh--hhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 999999999999999987 455555 89999999999999999999999999999963
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.9e-35 Score=222.60 Aligned_cols=241 Identities=28% Similarity=0.480 Sum_probs=205.5
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+..|...+..+.|. |+++ ++++++.||.|++|++.+++....+..|...|.++.|++ ++.++++++.||.|.+||+
T Consensus 47 ~~~~~~~i~~~~~~--~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 47 LKGHTGPVRDVAAS--ADGT-YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EecCCcceeEEEEC--CCCC-EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEEC
Confidence 34678888888887 8887 899999999999999999888888999999999999999 6788888888999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
.+++....+. .|...+.+++|+| ++.++++++.|+.+++||++. ......+..
T Consensus 123 ~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~-----------------------~~~~~~~~~ 175 (289)
T cd00200 123 ETGKCLTTLR---GHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRT-----------------------GKCVATLTG 175 (289)
T ss_pred CCcEEEEEec---cCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccc-----------------------cccceeEec
Confidence 9888888777 6899999999999 788888888899999999986 334455567
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
|...+.++.|+ ++.+++++.++.+++||++.++ .+..+..+...+..+.|+|++ .++++++.+|.|+
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~ 244 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK---------CLGTLRGHENGVNSVAFSPDG--YLLASGSEDGTIR 244 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCCc---------eecchhhcCCceEEEEEcCCC--cEEEEEcCCCcEE
Confidence 88899999997 4489998999999999998654 445555667789999999986 6888888899999
Q ss_pred EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
+||+.+.+. ...+. .|...|.+++|+|++++|++++.||.|++|+
T Consensus 245 i~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 245 VWDLRTGEC--VQTLS--GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCcee--EEEcc--ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999987653 33333 6677899999999999999999999999996
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-36 Score=222.34 Aligned_cols=237 Identities=19% Similarity=0.358 Sum_probs=202.8
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
++.|++++|. .||+ +||+|...|.|+|+|..+...++.+.+|+.+|..+.|+|+++..|++|+.|+.+++||+.+..
T Consensus 68 k~~v~s~~fR--~DG~-LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 68 KDVVYSVDFR--SDGR-LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred ccceeEEEee--cCCe-EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence 4678999998 8999 999999999999999888778899999999999999999999999999999999999999888
Q ss_pred eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590 88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (294)
....+. +|++.|.|.+|+|.+++++++|+.||.|++||++.. .+......|..+
T Consensus 145 v~~~l~---~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-----------------------~~~v~elnhg~p 198 (487)
T KOG0310|consen 145 VQAELS---GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL-----------------------TSRVVELNHGCP 198 (487)
T ss_pred EEEEec---CCcceeEeeccccCCCeEEEecCCCceEEEEEeccC-----------------------CceeEEecCCCc
Confidence 655566 799999999999988899999999999999999982 233445568899
Q ss_pred eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590 168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 245 (294)
Q Consensus 168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 245 (294)
|..+.+- |..+++++ ...+++||+.++.+ .+.....|...|+++++..++ ..|++|+-|+.+++||+
T Consensus 199 Ve~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q--------ll~~~~~H~KtVTcL~l~s~~--~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 199 VESVLALPSGSLIASAG-GNSVKVWDLTTGGQ--------LLTSMFNHNKTVTCLRLASDS--TRLLSGSLDRHVKVFDT 267 (487)
T ss_pred eeeEEEcCCCCEEEEcC-CCeEEEEEecCCce--------ehhhhhcccceEEEEEeecCC--ceEeecccccceEEEEc
Confidence 9999885 56777765 46899999997653 445555588899999999988 68999999999999998
Q ss_pred cCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590 246 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 289 (294)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw 289 (294)
.+.+ ....+... ++|.+++.+|+++.++.|-.||.+.+=
T Consensus 268 t~~K--vv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 268 TNYK--VVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred cceE--EEEeeecc---cceeeEEecCCCceEEEecccceeeee
Confidence 8776 34444333 789999999999999999999987654
No 52
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-35 Score=228.49 Aligned_cols=240 Identities=25% Similarity=0.430 Sum_probs=208.7
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-cCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
+++.|+++.|+ ++|. +|++|..+|.|.|||..+.+.+..+.+ |...|-+++|.. ..+.+|+.|+.|..+|++.
T Consensus 216 ~~~~vtSv~ws--~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 216 GEELVTSVKWS--PDGS-HLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCCceEEEEEC--CCCC-EEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEec
Confidence 37899999998 9999 999999999999999999999999998 999999999974 7899999999999999998
Q ss_pred CceEEE-eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 86 GICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 86 ~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
.+.... +. +|...|..++|++ ++.++|+|+.|+.+.|||... ..+...+..|
T Consensus 290 ~~~~~~~~~---~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~-----------------------~~p~~~~~~H 342 (484)
T KOG0305|consen 290 SQHVVSTLQ---GHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS-----------------------PEPKFTFTEH 342 (484)
T ss_pred chhhhhhhh---cccceeeeeEECC-CCCeeccCCCccceEeccCCC-----------------------ccccEEEecc
Confidence 876655 34 7999999999999 999999999999999999976 6678899999
Q ss_pred CCceeeccee---cceEEEee--CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590 165 SNYVDCNRWL---GDFILSKS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 239 (294)
Q Consensus 165 ~~~i~~~~~~---~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 239 (294)
.+.|.+++|+ ..+||+|+ .|+.|++||..++. .+.... ....|..+.|++..+......|..++.
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---------~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---------RIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---------Eecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 9999999998 78999876 59999999999776 233322 357799999999986333444778899
Q ss_pred EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
|.||+..+.+ ....+. +|...|..++++|||..+++|+.|.++++|++-+
T Consensus 413 i~lw~~ps~~--~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 413 ITLWKYPSMK--LVAELL--GHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEEeccccc--eeeeec--CCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999998865 333444 8999999999999999999999999999999854
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.5e-36 Score=216.56 Aligned_cols=269 Identities=22% Similarity=0.280 Sum_probs=208.7
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCC--CceEEEeeCCCcEEEEEc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNV 83 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~i~vwd~ 83 (294)
.|++-|.++.-+ ++ .+++|+.||.+++||. .|+....+.+|.++|.+++|.-.+ ...|++++.|.++++|.+
T Consensus 103 ~hdDWVSsv~~~----~~-~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA----SK-WILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc----Cc-eEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 577888888875 44 8999999999999996 688889999999999988886522 235999999999999999
Q ss_pred CCCceEEE-eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccc-ccccce-eecCCCCCCCCceeeeceEE
Q 022590 84 QTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT-YVEKSF-TWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~ 160 (294)
+.++.... .....||...|.++...+ ++..+++|+.|.+|.+|+...... ..+..- ..............+.|+..
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 87764322 222338999999999999 999999999999999999333111 111110 01111112233444678899
Q ss_pred eecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590 161 ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 239 (294)
Q Consensus 161 ~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 239 (294)
+.+|..+|.++.|+ ...+++++.|.+|+.||+.++.. ...+.. ...+.++..+|.. .+|++|+.|..
T Consensus 256 l~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~---------~~~~~~-~ksl~~i~~~~~~--~Ll~~gssdr~ 323 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL---------KSTLTT-NKSLNCISYSPLS--KLLASGSSDRH 323 (423)
T ss_pred ecccccceeeEEEcCCCceEeecccceEEEEEeecccc---------eeeeec-CcceeEeeccccc--ceeeecCCCCc
Confidence 99999999999998 77899999999999999998763 333332 4568889999977 69999999999
Q ss_pred EEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecCCC
Q 022590 240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIPT 294 (294)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~ 294 (294)
|++||.+++.. ........+|.+.|.++.|+|.. ..|++|+.|+++++||++++
T Consensus 324 irl~DPR~~~g-s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 324 IRLWDPRTGDG-SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eeecCCCCCCC-ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999998753 23333445899999999999965 46788999999999999864
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-34 Score=201.93 Aligned_cols=247 Identities=15% Similarity=0.238 Sum_probs=200.7
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC--CCcEEEEEc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--DESVRLWNV 83 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~ 83 (294)
+-...|+++.|+ ++|. ++++++.|.+++|||..+++.++++..+.-.|..++|.. ....++.++. |.+||..++
T Consensus 12 ~~~~~i~sl~fs--~~G~-~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 12 ETNGKINSLDFS--DDGL-LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cCCCceeEEEec--CCCC-EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEe
Confidence 456889999998 9999 899999999999999999999999998888999999987 4555555555 899999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
.+.+.++.|. ||...|++|+.+| .+..+++++.|++|++||++. ......+..
T Consensus 88 ~dNkylRYF~---GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~-----------------------~~cqg~l~~ 140 (311)
T KOG1446|consen 88 HDNKYLRYFP---GHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRV-----------------------KKCQGLLNL 140 (311)
T ss_pred ecCceEEEcC---CCCceEEEEEecC-CCCeEEecccCCeEEeeEecC-----------------------CCCceEEec
Confidence 9999999999 8999999999999 778999999999999999997 233334444
Q ss_pred CCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee---cCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590 164 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAIGNREGKI 240 (294)
Q Consensus 164 ~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 240 (294)
...++.+....|-++|++.....|++||+|+-... +...+. ......+.+.|+|+|+ +++.++..+.+
T Consensus 141 ~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg-------PF~tf~i~~~~~~ew~~l~FS~dGK--~iLlsT~~s~~ 211 (311)
T KOG1446|consen 141 SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKG-------PFTTFSITDNDEAEWTDLEFSPDGK--SILLSTNASFI 211 (311)
T ss_pred CCCcceeECCCCcEEEEecCCCeEEEEEecccCCC-------CceeEccCCCCccceeeeEEcCCCC--EEEEEeCCCcE
Confidence 44555555555888888888889999999976432 222332 3467899999999995 78888899999
Q ss_pred EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
++.|.-++..............-+ ...+|+||++++++|+.||+|.+|++++
T Consensus 212 ~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 212 YLLDAFDGTVKSTFSGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEEEccCCcEeeeEeeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 999999987544444432222223 6788999999999999999999999875
No 55
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.2e-34 Score=227.49 Aligned_cols=244 Identities=18% Similarity=0.280 Sum_probs=181.3
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----------ccc---ceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLH---KSFVGHGDSINEIRTQPLKPSLVVSASKD 75 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 75 (294)
..|.....+ +++. .+++++.+.....|+...+ +.. ..+.+|.+.|++++|+|.++++|++|+.|
T Consensus 21 ~~i~~~~~~--~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 21 LNVTPSTAL--WDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ecccccccc--CCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 444444443 5654 4666666666666664332 211 24678999999999999677899999999
Q ss_pred CcEEEEEcCCCc-------eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590 76 ESVRLWNVQTGI-------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 148 (294)
Q Consensus 76 g~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 148 (294)
++|++||+.++. .+..+. +|...|.+++|+|..+++|++++.|++|++||+++
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~---gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t----------------- 157 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQ---GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER----------------- 157 (493)
T ss_pred CEEEEEecCCCccccccCcceEEec---CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-----------------
Confidence 999999997653 344455 79999999999995567999999999999999987
Q ss_pred CCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC-eeEEEEccc
Q 022590 149 FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD-IWFIKFSCD 225 (294)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~ 225 (294)
......+..|...|.+++|+ +++|++++.|+.|++||+++++ .+..+..|... ...+.|.++
T Consensus 158 ------g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---------~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 158 ------GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---------IVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred ------CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---------EEEEEecCCCCcceEEEEcCC
Confidence 33456677899999999997 8899999999999999999765 45556666543 446778887
Q ss_pred CCcceEEEE---cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEecCC
Q 022590 226 FHYNAAAIG---NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAIP 293 (294)
Q Consensus 226 ~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~~ 293 (294)
+. .++.+| +.|+.|++||+++...... ... ......+....|++++++|++++ .||.|++||+..
T Consensus 223 ~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~-~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 223 KD-LIITLGCSKSQQRQIMLWDTRKMASPYS-TVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CC-eEEEEecCCCCCCeEEEEeCCCCCCcee-Eec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 63 334444 3589999999987643221 111 12234566678999999999887 599999999874
No 56
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.1e-35 Score=210.49 Aligned_cols=245 Identities=20% Similarity=0.348 Sum_probs=210.1
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+-+|-+.|..++++ +... |+++++.|+.|+.||++..+.++.+.+|-..|.|++.+| .-+.|++|+.|.+++|||+
T Consensus 189 ltGhi~~vr~vavS--~rHp-YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDi 264 (460)
T KOG0285|consen 189 LTGHIETVRGVAVS--KRHP-YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDI 264 (460)
T ss_pred ecchhheeeeeeec--ccCc-eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeee
Confidence 44788999999997 6665 999999999999999999999999999999999999999 7789999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
++...+..+. +|..+|..+.+.|.+ ..+++|+.|++|++||++. ......+..
T Consensus 265 Rtr~~V~~l~---GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~a-----------------------gkt~~tlt~ 317 (460)
T KOG0285|consen 265 RTRASVHVLS---GHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRA-----------------------GKTMITLTH 317 (460)
T ss_pred cccceEEEec---CCCCcceeEEeecCC-CceEEecCCceEEEeeecc-----------------------CceeEeeec
Confidence 9999999998 799999999999945 4599999999999999998 556778888
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
|...+.+++.+ ...|++++.| .|+-|++..+. .+..+..|...+++++...|+ ++++|+++|.+.
T Consensus 318 hkksvral~lhP~e~~fASas~d-nik~w~~p~g~---------f~~nlsgh~~iintl~~nsD~---v~~~G~dng~~~ 384 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE---------FLQNLSGHNAIINTLSVNSDG---VLVSGGDNGSIM 384 (460)
T ss_pred ccceeeEEecCCchhhhhccCCc-cceeccCCccc---------hhhccccccceeeeeeeccCc---eEEEcCCceEEE
Confidence 99999999987 4566666655 68999998776 456678888899999999887 899999999999
Q ss_pred EEeccCCCceeeee-cc---ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 242 VWELQSSPPVLIAR-LS---HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 242 i~d~~~~~~~~~~~-~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
+||.+++-..+... .. .-.....|.+.+|...|..|++|..|.+|++|.-.
T Consensus 385 fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 385 FWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred EEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99999875332221 11 11234679999999999999999999999999754
No 57
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.4e-34 Score=226.20 Aligned_cols=227 Identities=19% Similarity=0.299 Sum_probs=175.7
Q ss_pred ccccCceeEEEEEeecC-CCceEEEEeecCCeEEEEEcCCc-------cccceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590 4 VDQKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKD 75 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 75 (294)
+..|.+.|++++|+ | +++ +|++|+.||+|++||+.++ +++..+.+|...|.+++|+|...++|++|+.|
T Consensus 71 l~GH~~~V~~v~fs--P~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 71 LLGQEGPIIDVAFN--PFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred EeCCCCCEEEEEEc--CCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 56899999999998 6 666 9999999999999999765 34567889999999999999546799999999
Q ss_pred CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590 76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 155 (294)
Q Consensus 76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (294)
++|++||+.+++.+..+. +|...|.+++|+| ++.+|++++.|+.|++||+++ .
T Consensus 148 gtVrIWDl~tg~~~~~l~---~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs-----------------------g 200 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIK---CHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD-----------------------G 200 (493)
T ss_pred CEEEEEECCCCeEEEEEc---CCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCC-----------------------C
Confidence 999999999998888777 6999999999999 889999999999999999998 3
Q ss_pred eceEEeecCCCce-eeccee--cceEEEee----CCCeEEEecCCCCCCCCCCCCceeeeeeecC-CCCeeEEEEcccCC
Q 022590 156 FPVFIASVHSNYV-DCNRWL--GDFILSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFH 227 (294)
Q Consensus 156 ~~~~~~~~~~~~i-~~~~~~--~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~ 227 (294)
..+..+..|.... ..+.|. ++.+++++ .|+.|++||+++... .+.....+ ...+....|++++
T Consensus 201 ~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--------p~~~~~~d~~~~~~~~~~d~d~- 271 (493)
T PTZ00421 201 TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--------PYSTVDLDQSSALFIPFFDEDT- 271 (493)
T ss_pred cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--------ceeEeccCCCCceEEEEEcCCC-
Confidence 3445566676543 344554 45666544 478999999986542 22222222 2345556788888
Q ss_pred cceEEEEc-CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590 228 YNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 273 (294)
Q Consensus 228 ~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 273 (294)
.++++++ .|+.|++||+.+++....... .+..++..++|.|.
T Consensus 272 -~~L~lggkgDg~Iriwdl~~~~~~~~~~~---~s~~~~~g~~~~pk 314 (493)
T PTZ00421 272 -NLLYIGSKGEGNIRCFELMNERLTFCSSY---SSVEPHKGLCMMPK 314 (493)
T ss_pred -CEEEEEEeCCCeEEEEEeeCCceEEEeec---cCCCCCcceEeccc
Confidence 4676666 599999999998874443322 34467888888885
No 58
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.1e-33 Score=225.58 Aligned_cols=225 Identities=19% Similarity=0.367 Sum_probs=171.5
Q ss_pred eecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc--------eEEEeeccCCCCC
Q 022590 29 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--------CILIFAGAGGHRN 100 (294)
Q Consensus 29 ~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~ 100 (294)
|+.++.|++|+......+..+.+|.++|.+++|+|.++.+|++|+.||+|++||+.++. .+..+. +|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~---gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK---GHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee---cCCC
Confidence 56678999999887778888999999999999999557899999999999999997642 223344 7999
Q ss_pred ceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceE
Q 022590 101 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 178 (294)
Q Consensus 101 ~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 178 (294)
.|.+++|+|....+|++++.|++|++||+++. .....+. |...|.+++|+ |.+|
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-----------------------~~~~~i~-~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENE-----------------------KRAFQIN-MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-----------------------cEEEEEe-cCCcEEEEEECCCCCEE
Confidence 99999999944456789999999999999973 2222333 55779999997 8899
Q ss_pred EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE-----EEcccCCcceEEEEcCC----CeEEEEeccC-C
Q 022590 179 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI-----KFSCDFHYNAAAIGNRE----GKIFVWELQS-S 248 (294)
Q Consensus 179 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~l~~~~~d----g~i~i~d~~~-~ 248 (294)
++++.|+.|++||+++++ .+..+..|...+... .|++++ .++++++.+ +.|++||++. .
T Consensus 183 at~s~D~~IrIwD~Rsg~---------~i~tl~gH~g~~~s~~v~~~~fs~d~--~~IlTtG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQE---------IASSFHIHDGGKNTKNIWIDGLGGDD--NYILSTGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred EEEecCCEEEEEECCCCc---------EEEEEecccCCceeEEEEeeeEcCCC--CEEEEEEcCCCCccEEEEEECCCCC
Confidence 999999999999999765 456677776654332 344666 477776655 3799999996 3
Q ss_pred CceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+++....+ ..+.+.+......++|.++++|+.|+.|++|++..
T Consensus 252 ~pl~~~~l--d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 252 SALVTMSI--DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CceEEEEe--cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 33333222 24444455555566789999999999999999864
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-35 Score=200.72 Aligned_cols=246 Identities=20% Similarity=0.266 Sum_probs=201.8
Q ss_pred CceeEEEEEeecCCCceEEEEee-----cCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 8 EESFYTVSWACNVDGIPFLVAGG-----INGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
...-+++.|+|--+++..+|++. ..|++.|.++...+-+..+. .-.+.+..++|++...+.+++++.||++++
T Consensus 8 gf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 8 GFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRL 87 (311)
T ss_pred CcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEE
Confidence 34557889986556652222222 36899999987555444443 246789999999988889999999999999
Q ss_pred EEcCC-CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590 81 WNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 159 (294)
Q Consensus 81 wd~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (294)
||+.. ..++..++ +|...|.++.|++..+..+++++-|++|++|+... +..+.
T Consensus 88 ~d~~~~s~Pi~~~k---EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-----------------------~~Sv~ 141 (311)
T KOG0277|consen 88 FDLTMPSKPIHKFK---EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-----------------------PNSVQ 141 (311)
T ss_pred eccCCCCcchhHHH---hhhhheEEeccccccceeEEeeccCCceEeecCCC-----------------------CcceE
Confidence 99643 24556666 79999999999998889999999999999999987 56678
Q ss_pred EeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590 160 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 236 (294)
Q Consensus 160 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 236 (294)
++.+|...|....|+ ++.+++++.|+.+++||++... ....++.|...+.++.|+.-.. +++++|+.
T Consensus 142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g---------k~~~i~ah~~Eil~cdw~ky~~-~vl~Tg~v 211 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG---------KFMSIEAHNSEILCCDWSKYNH-NVLATGGV 211 (311)
T ss_pred eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC---------ceeEEEeccceeEeecccccCC-cEEEecCC
Confidence 899999999999997 8999999999999999998653 3444888888999999998876 79999999
Q ss_pred CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecC
Q 022590 237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAI 292 (294)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~ 292 (294)
|+.|+.||+++.+. .+..+. +|.-.|+.++|||.. ..||+++.|-+++|||.+
T Consensus 212 d~~vr~wDir~~r~-pl~eL~--gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRT-PLFELN--GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred CceEEEEehhhccc-cceeec--CCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 99999999998763 344444 888999999999964 689999999999999986
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=229.52 Aligned_cols=238 Identities=23% Similarity=0.346 Sum_probs=206.4
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+.+|.+.|.++++. .+..++++|+.|.++++||..++++...+.+|.+.|.++...+ .++++|+.|.+|++|++
T Consensus 245 l~GH~g~V~~l~~~---~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFP---SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDV 318 (537)
T ss_pred ccCCCCCceeEEEe---cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEec
Confidence 67999999999994 3334899999999999999999999999999999999999866 67899999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
.++..+..+. +|.++|+++..+ +.++++|+.|++|++||+.+ ...+..+.+
T Consensus 319 ~n~~~l~l~~---~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~-----------------------~~cl~sl~g 369 (537)
T KOG0274|consen 319 TNGACLNLLR---GHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRT-----------------------GKCLKSLSG 369 (537)
T ss_pred cCcceEEEec---cccccEEEEEec---CCEEEEEecCceEEEEEhhh-----------------------ceeeeeecC
Confidence 9999999988 699999999995 67899999999999999998 667889999
Q ss_pred CCCceeecceec-ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 164 HSNYVDCNRWLG-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 164 ~~~~i~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
|...|.++.+.+ +.+++|+.|+.|++||+++.. .++..+..|..-+..+.+.. ++|++++.||.|++
T Consensus 370 H~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v~~l~~~~----~~Lvs~~aD~~Ik~ 437 (537)
T KOG0274|consen 370 HTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLVSSLLLRD----NFLVSSSADGTIKL 437 (537)
T ss_pred CcceEEEEEecCcceEEeeeeccceEeecCCchh--------hhhhhhcCCccccccccccc----ceeEeccccccEEE
Confidence 999999999998 999999999999999999772 26777777777665554432 58999999999999
Q ss_pred EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
||..+++......-. |...|..+++. ...+++++.||.+++||+++
T Consensus 438 WD~~~~~~~~~~~~~---~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 438 WDAEEGECLRTLEGR---HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred eecccCceeeeeccC---CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 999998754443321 55778888887 45788999999999999975
No 61
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-34 Score=222.14 Aligned_cols=255 Identities=18% Similarity=0.292 Sum_probs=210.6
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
+-.+.|..++|- .|+.+ +||.++..+.+++|+..+..+. .+.+|++.|.++.... ++.+|++|+.|.++++|.++.
T Consensus 321 G~ndEI~Dm~~l-G~e~~-~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 321 GYNDEILDMKFL-GPEES-HLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred CCchhheeeeec-CCccc-eEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecC
Confidence 445788999986 35566 9999999999999998877664 8899999999999444 568999999999999999854
Q ss_pred CceE-EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 86 GICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 86 ~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
+... ..+....+|.+.|.+++++.....+|++++.|+++++|++........ ............|
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------------~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------------PIVLTCRYTERAH 462 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------------cceehhhHHHHhh
Confidence 4322 122223389999999999887789999999999999999987211100 0011122355679
Q ss_pred CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
...|++++.+ ..++++|+.|.+.++|++.... ....+.+|...++++.|+|.. ..+++++.|++|+|
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~---------l~~vLsGH~RGvw~V~Fs~~d--q~laT~SgD~TvKI 531 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR---------LLGVLSGHTRGVWCVSFSKND--QLLATCSGDKTVKI 531 (775)
T ss_pred cccccceEecCCCceEEecccccceeeecccCce---------EEEEeeCCccceEEEEecccc--ceeEeccCCceEEE
Confidence 9999999987 6799999999999999998443 788999999999999999998 58999999999999
Q ss_pred EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
|.+.+.. +..++. +|...|..+.|-.+|+.|++++.||.|++|++++
T Consensus 532 W~is~fS--ClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 532 WSISTFS--CLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EEeccce--eeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 9999986 555665 8999999999999999999999999999999975
No 62
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.3e-34 Score=210.25 Aligned_cols=246 Identities=22% Similarity=0.289 Sum_probs=210.9
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc----c-------------ee-cccCcceEEEEeCCCC
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH----K-------------SF-VGHGDSINEIRTQPLK 65 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~-------------~~-~~h~~~v~~~~~~~~~ 65 (294)
+..|.-+|.+++++ |+++ +.++++.+|+|.=|++.+++.. . .- ++|...+.+++.++ +
T Consensus 138 ~~~H~~s~~~vals--~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-D 213 (479)
T KOG0299|consen 138 IGKHQLSVTSVALS--PDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-D 213 (479)
T ss_pred eccccCcceEEEee--cccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-C
Confidence 34788999999998 8888 9999999999999999877532 1 11 26888999999999 9
Q ss_pred CceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590 66 PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 145 (294)
Q Consensus 66 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 145 (294)
+++|++|+.|..|.||+.++.+.+..+. +|.+.|.+++|-. +.+.+++++.|+++++|++..
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~---ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~-------------- 275 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFK---GHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQ-------------- 275 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhccc---ccccceeeeeeec-CccceeeeecCCceEEEehhH--------------
Confidence 9999999999999999999999999988 7999999999997 778899999999999999998
Q ss_pred CCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc
Q 022590 146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 223 (294)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (294)
...+..+.+|++.|..+.-. +..+-+|+.|+++++|++.... ...+..+...+.+++|-
T Consensus 276 ---------~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees----------qlifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 276 ---------LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES----------QLIFRGGEGSIDCVAFI 336 (479)
T ss_pred ---------hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc----------eeeeeCCCCCeeeEEEe
Confidence 45567888999999999875 5566666799999999995432 23345567789999998
Q ss_pred ccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCC--------CeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 224 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS--------PIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 224 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.+. .+++|+.+|.|.+|++.+.+++......|..... .|++++..|...++|+|+.+|.|++|.+++
T Consensus 337 n~~---HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 337 NDE---HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred ccc---ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 885 7999999999999999999988888777543333 799999999999999999999999999875
No 63
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=4.9e-33 Score=221.89 Aligned_cols=228 Identities=15% Similarity=0.191 Sum_probs=171.5
Q ss_pred cccccCceeEEEEEeecCC-CceEEEEeecCCeEEEEEcCCcc--------ccceecccCcceEEEEeCCCCCceEEEee
Q 022590 3 YVDQKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEK--------LHKSFVGHGDSINEIRTQPLKPSLVVSAS 73 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 73 (294)
.+..|.++|.+++|+ |+ +. +||+|+.||+|+|||+.++. ++..+.+|...|.+++|+|....+|++++
T Consensus 69 ~L~gH~~~V~~lafs--P~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 69 KLKGHTSSILDLQFN--PCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred EEcCCCCCEEEEEEc--CCCCC-EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 356899999999998 65 55 99999999999999997642 23467889999999999994444668999
Q ss_pred CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590 74 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 153 (294)
Q Consensus 74 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (294)
.|++|++||+++++....+. |...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs---------------------- 198 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK---------------------- 198 (568)
T ss_pred CCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC----------------------
Confidence 99999999999998777665 667899999999 889999999999999999998
Q ss_pred eeeceEEeecCCCceeecc-----e--ecceEEEeeCCC----eEEEecCCCCCCCCCCCCceeeeee--ecCCCCeeEE
Q 022590 154 VQFPVFIASVHSNYVDCNR-----W--LGDFILSKSVDN----EIVLWEPKMKEQSPGEGTADILQKY--PVPECDIWFI 220 (294)
Q Consensus 154 ~~~~~~~~~~~~~~i~~~~-----~--~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~ 220 (294)
...+..+.+|.+.+.+.. | +++++++++.++ .|+|||++.... ++... ......+...
T Consensus 199 -g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~--------pl~~~~ld~~~~~L~p~ 269 (568)
T PTZ00420 199 -QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS--------ALVTMSIDNASAPLIPH 269 (568)
T ss_pred -CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC--------ceEEEEecCCccceEEe
Confidence 334556677776543322 2 356888877764 799999996432 22222 2222333333
Q ss_pred EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590 221 KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 274 (294)
Q Consensus 221 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (294)
...+++ .++++|..|+.|++|++..+. ...+....+..++.+++|.|..
T Consensus 270 ~D~~tg--~l~lsGkGD~tIr~~e~~~~~---~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 270 YDESTG--LIYLIGKGDGNCRYYQHSLGS---IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred eeCCCC--CEEEEEECCCeEEEEEccCCc---EEeecccccCCCccceEEcccc
Confidence 333344 688999999999999998764 2333333466788999999964
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=194.19 Aligned_cols=265 Identities=20% Similarity=0.349 Sum_probs=214.3
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce--ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
+.|..+|.+++|+ .+|. .|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+|....++++++.|.+|++||
T Consensus 17 ~~~~~~v~Sv~wn--~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 17 QGHVQKVHSVAWN--CDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhcceEEEEc--ccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4788999999998 7898 999999999999999987765543 4689999999999998899999999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCC-------CCC------
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP-------SKF------ 149 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-------~~~------ 149 (294)
++++++..... ....=.-+.|+| ++.++++++.|..|...|.++.+...+..+...... ..+
T Consensus 94 ~r~~k~~~~i~----~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 94 IRSGKCTARIE----TKGENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred eccCcEEEEee----ccCcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 99999999887 445556789999 888999999999999999998554433332221110 000
Q ss_pred -----CCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEE
Q 022590 150 -----PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 222 (294)
Q Consensus 150 -----~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 222 (294)
..-...+|+..+..|+....|+.|+ |++|++|+.|..+.+||+...- +.+.+.-..-+|..+.|
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi---------C~R~isRldwpVRTlSF 239 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI---------CERCISRLDWPVRTLSF 239 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh---------hheeeccccCceEEEEe
Confidence 0011245678889999999999997 9999999999999999998543 55666667778999999
Q ss_pred cccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC---------CcEEEEecCC
Q 022590 223 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED---------GAIWRWDAIP 293 (294)
Q Consensus 223 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~vw~~~~ 293 (294)
+.++ .+||++++|..|-|=+++++... ..+ .+.++-..++|+|...+||-++.| |.+++|-+.+
T Consensus 240 S~dg--~~lASaSEDh~IDIA~vetGd~~--~eI---~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 240 SHDG--RMLASASEDHFIDIAEVETGDRV--WEI---PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred ccCc--ceeeccCccceEEeEecccCCeE--EEe---eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 9999 69999999999999999999743 333 455788999999999999877654 5678776543
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.3e-33 Score=201.89 Aligned_cols=248 Identities=18% Similarity=0.302 Sum_probs=200.2
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc----cceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
.+|.++|.+++|....+....+++++.|.++++|..+.+.. ++.-.||...|-+++..+ ++..+++|+.|.+|++
T Consensus 141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lki 219 (423)
T KOG0313|consen 141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKI 219 (423)
T ss_pred ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeee
Confidence 48999999999986555544799999999999999877643 333459999999999999 8999999999999999
Q ss_pred EEcCC-------------------------CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccc
Q 022590 81 WNVQT-------------------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY 135 (294)
Q Consensus 81 wd~~~-------------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 135 (294)
|+..+ +.++..+. +|..+|.++.|++ ...+++++.|.+|+.||+.++..
T Consensus 220 Ws~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~---GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~- 293 (423)
T KOG0313|consen 220 WSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE---GHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL- 293 (423)
T ss_pred cccCCCccccccccchhhhhhhhhhhcccccCceEEec---ccccceeeEEEcC--CCceEeecccceEEEEEeecccc-
Confidence 99321 11222333 8999999999985 66799999999999999998432
Q ss_pred cccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC
Q 022590 136 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 213 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 213 (294)
...+ ..+..+.++.+. .++|++|+.|..|++||++++. .....+.+.+|
T Consensus 294 ----------------------~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~------gs~v~~s~~gH 344 (423)
T KOG0313|consen 294 ----------------------KSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD------GSVVSQSLIGH 344 (423)
T ss_pred ----------------------eeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCC------CceeEEeeecc
Confidence 1111 234556666665 7899999999999999999885 44467888899
Q ss_pred CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
...|.++.|+|... ..|++|+.|+++++||+++.+. .+..+. +|...|.++.|. ++.++++|+.|.+|+|+.-.+
T Consensus 345 ~nwVssvkwsp~~~-~~~~S~S~D~t~klWDvRS~k~-plydI~--~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 345 KNWVSSVKWSPTNE-FQLVSGSYDNTVKLWDVRSTKA-PLYDIA--GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred hhhhhheecCCCCc-eEEEEEecCCeEEEEEeccCCC-cceeec--cCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 99999999999987 6899999999999999999762 233333 778999999998 456899999999999987543
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=204.53 Aligned_cols=245 Identities=22% Similarity=0.387 Sum_probs=205.0
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee--------cccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF--------VGHGDSINEIRTQPLKPSLVVSASKDES 77 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 77 (294)
..+.-+.|..|+ |||+ +|++|+.||.|.+||..+|+..+.+ ..+..+|.|+.|+. +...|++|+.||.
T Consensus 211 g~KSh~EcA~FS--PDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFS--PDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGK 286 (508)
T ss_pred ccccchhheeeC--CCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCc
Confidence 344566777887 9999 9999999999999999999766543 45788999999999 8899999999999
Q ss_pred EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
|++|.+.+|.+++.|.. .|...|+|+.|+. ++..+++++.|.++++.-+.. ...
T Consensus 287 IKvWri~tG~ClRrFdr--AHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKS-----------------------GK~ 340 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDR--AHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKS-----------------------GKC 340 (508)
T ss_pred EEEEEEecchHHHHhhh--hhccCeeEEEEcc-CcchhhcccccceEEEecccc-----------------------chh
Confidence 99999999999999986 7999999999998 888899999999999999998 455
Q ss_pred eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee--cCCCCeeEEEEcccCCcceEEE
Q 022590 158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAI 233 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~ 233 (294)
+..+.+|...|+...|. |..+++++.||+|++|+..+.++. ..+. ....+|..+..-|... ..+++
T Consensus 341 LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~---------~Tfk~~~~d~~vnsv~~~PKnp-eh~iV 410 (508)
T KOG0275|consen 341 LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL---------STFKPLGTDYPVNSVILLPKNP-EHFIV 410 (508)
T ss_pred HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhh---------hhccCCCCcccceeEEEcCCCC-ceEEE
Confidence 67789999999999996 999999999999999999987642 2222 2345677887777765 67888
Q ss_pred EcCCCeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 234 GNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+...+++++.++... .+..+. .....+...+.+.+|.|.++.+.++|+.++.|.+.+
T Consensus 411 CNrsntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred EcCCCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 888999999998765 333333 223345677889999999999999999999988643
No 67
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=197.40 Aligned_cols=238 Identities=18% Similarity=0.298 Sum_probs=189.0
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCc--eEEEeeCCCcEEEE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKDESVRLW 81 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i~vw 81 (294)
...|.++|++++.+ |. ++|+|+.|-+|+|||+.+.+.+..+-.|.+.|+++.|.+ ... .|++|+.||.|.+|
T Consensus 39 ~~aH~~sitavAVs----~~-~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 39 FSAHAGSITALAVS----GP-YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccceeEEEec----ce-eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEE
Confidence 35899999999985 76 999999999999999999999999999999999999998 443 89999999999999
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
+.....++..++ +|.+.|+.++.+| .+.+.++.+.|+.+++|++-.++..... .+
T Consensus 113 ~~~~W~~~~slK---~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~---------------------~L 167 (362)
T KOG0294|consen 113 RVGSWELLKSLK---AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVL---------------------NL 167 (362)
T ss_pred EcCCeEEeeeec---ccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceee---------------------cc
Confidence 999999998888 7999999999999 9999999999999999999885422111 11
Q ss_pred ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590 162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 239 (294)
Q Consensus 162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 239 (294)
.+.. ..+.|+ |++++.++. ..|-+|.+.+.. .......+ ..+.++.|-.. ..|++|..++.
T Consensus 168 -~~~a--t~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~---------v~~~i~~~-~r~l~~~~l~~---~~L~vG~d~~~ 230 (362)
T KOG0294|consen 168 -KNKA--TLVSWSPQGDHFVVSGR-NKIDIYQLDNAS---------VFREIENP-KRILCATFLDG---SELLVGGDNEW 230 (362)
T ss_pred -CCcc--eeeEEcCCCCEEEEEec-cEEEEEecccHh---------Hhhhhhcc-ccceeeeecCC---ceEEEecCCce
Confidence 1222 226665 888888765 468899887544 22222222 33444444433 48999999999
Q ss_pred EEEEeccCCCceeeeeccccccCCCeEEEEE--ccCCCEEEEeccCCcEEEEecCC
Q 022590 240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAM--SYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
|.+||..+..+. ..+. +|...|.++.+ .|++.+|+|+|.||.|+|||++.
T Consensus 231 i~~~D~ds~~~~--~~~~--AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 231 ISLKDTDSDTPL--TEFL--AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred EEEeccCCCccc--eeee--cchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 999999986533 3333 88899999984 46788999999999999999875
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.1e-33 Score=195.78 Aligned_cols=244 Identities=18% Similarity=0.273 Sum_probs=189.4
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-cccc-ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
..++.|.+|+|++..+ +++++|+.||+||+|+++. +..+ +....|.++|.+++|+. ++..+++|+.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~--~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQAD--NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccC--ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEc
Confidence 4578999999995333 3888999999999999976 3332 44567999999999999 8899999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCc--eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
.+++.... . .|.++|.++.|-+ ... .|+||+.|.+|+.||.|. ..++..+
T Consensus 102 ~S~Q~~~v-~---~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~-----------------------~~pv~t~ 153 (347)
T KOG0647|consen 102 ASGQVSQV-A---AHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRS-----------------------SNPVATL 153 (347)
T ss_pred cCCCeeee-e---ecccceeEEEEec-CCCcceeEecccccceeecccCC-----------------------CCeeeee
Confidence 99965544 4 4999999999987 544 899999999999999998 3334333
Q ss_pred ecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 162 SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 162 ~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
. -+..+.++..-..+++++..++.|.+|+++.+...... ....-.-.+.+++..++.+ -.+.|+.+|.+.
T Consensus 154 ~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~-------~~SpLk~Q~R~va~f~d~~--~~alGsiEGrv~ 223 (347)
T KOG0647|consen 154 Q-LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKR-------IESPLKWQTRCVACFQDKD--GFALGSIEGRVA 223 (347)
T ss_pred e-ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhh-------hcCcccceeeEEEEEecCC--ceEeeeecceEE
Confidence 3 34566666666788999999999999999876421110 0011234577888888885 458899999999
Q ss_pred EEeccCCCceeeeecccccc---------CCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 242 VWELQSSPPVLIARLSHAQS---------KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 242 i~d~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
+..+....+.....++ -| -..|++++|+|.-..|+|++.||+..+||-.
T Consensus 224 iq~id~~~~~~nFtFk--CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFK--CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EEecCCCCccCceeEE--EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 9999886443333333 22 2368999999999999999999999999964
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=6.7e-35 Score=212.69 Aligned_cols=248 Identities=21% Similarity=0.318 Sum_probs=204.6
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
.++.|++.+..+.|- ++.. .|++|+.|..|++|+....+ .+.++.+..++|+++.|.+ ++..+++++.|+.+++
T Consensus 170 ~ld~h~gev~~v~~l--~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFL--RNSD-TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhccccccceeEEc--cCcc-hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceee
Confidence 357899999999997 5545 79999999999999987766 7788888899999999999 8889999999999999
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
|++.+.+...++. +|++.|+++.|.. ....+++|+.|.+|+.||+...... .
T Consensus 246 Wnvd~~r~~~TLs---GHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~-----------------------k- 297 (459)
T KOG0288|consen 246 WNVDSLRLRHTLS---GHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCS-----------------------K- 297 (459)
T ss_pred eeccchhhhhhhc---ccccceeeehhhc-cccceeeccccchhhhhhhhhhhee-----------------------c-
Confidence 9999999999888 7999999999987 5556999999999999999973211 0
Q ss_pred eecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590 161 ASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 240 (294)
Q Consensus 161 ~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 240 (294)
.......+..+...+..+++|..|++|++||.++.. .....+.+. .|+++..++++ ..+.+.+.|..+
T Consensus 298 t~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~---------~~~sv~~gg-~vtSl~ls~~g--~~lLsssRDdtl 365 (459)
T KOG0288|consen 298 TVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD---------KTRSVPLGG-RVTSLDLSMDG--LELLSSSRDDTL 365 (459)
T ss_pred cccccccccceEecceeeeecccccceEEEeccCCc---------eeeEeecCc-ceeeEeeccCC--eEEeeecCCCce
Confidence 011122333444446788899999999999999765 566666654 89999999999 578888999999
Q ss_pred EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCCC
Q 022590 241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 294 (294)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 294 (294)
.++|+++.+................+.+.|||++.|+++||.||.|+||++.++
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 999999987665555543333455899999999999999999999999998753
No 70
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-33 Score=197.11 Aligned_cols=244 Identities=17% Similarity=0.262 Sum_probs=192.9
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
..++.|+++.|+ |.+. .|++++.||++++|+.....+...++ |..++.+++|.+ ...+++|+.||.|+.+|+.+
T Consensus 11 pP~d~IS~v~f~--~~~~-~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 11 PPEDGISSVKFS--PSSS-DLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred CChhceeeEEEc--CcCC-cEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEeccCceEEEEEecC
Confidence 457899999998 6666 78888899999999999887666666 899999999996 56799999999999999998
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
+.....-. |..+|.||.+++ ....+++|+.|++|++||.+. ......+. ..
T Consensus 85 ~~~~~igt----h~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~-----------------------~~~~~~~d-~~ 135 (323)
T KOG1036|consen 85 GNEDQIGT----HDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRN-----------------------KVVVGTFD-QG 135 (323)
T ss_pred Ccceeecc----CCCceEEEEeec-cCCeEEEcccCccEEEEeccc-----------------------cccccccc-cC
Confidence 87665544 999999999998 777899999999999999996 11222222 33
Q ss_pred CceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590 166 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 245 (294)
Q Consensus 166 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 245 (294)
..|.++...++.|++|+.+..+.+||+++....... ....-+-.+.++++-|++. -.++++-||.|.+=.+
T Consensus 136 kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~-------reS~lkyqtR~v~~~pn~e--Gy~~sSieGRVavE~~ 206 (323)
T KOG1036|consen 136 KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQR-------RESSLKYQTRCVALVPNGE--GYVVSSIEGRVAVEYF 206 (323)
T ss_pred ceEEEEeccCCEEEEeecCceEEEEEcccccchhhh-------ccccceeEEEEEEEecCCC--ceEEEeecceEEEEcc
Confidence 488888888999999999999999999987642211 1112234678899999664 4788899999988777
Q ss_pred cCCCceeeeeccccccC---------CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 246 QSSPPVLIARLSHAQSK---------SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 246 ~~~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+..+.....++....|. .||++++|+|-.+.||||+.||.|.+||+.+
T Consensus 207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred CCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence 66533333333322332 4899999999999999999999999999864
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=209.76 Aligned_cols=241 Identities=15% Similarity=0.269 Sum_probs=198.9
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 86 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 86 (294)
...+|.+++|++..... +|+.+. -.+.||+..+....+++....+.|.++.|-. ||.+|++|...|.|+|+|+.+.
T Consensus 25 e~~~vssl~fsp~~P~d--~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYD--FAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCc--eEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccH
Confidence 34689999999532232 444443 4799999999988888888899999999998 9999999999999999997765
Q ss_pred ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590 87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (294)
..+..+. +|+.++..+.|+|.++..|++|+.|+.+++||+.+ ......+.+|.+
T Consensus 101 ~iLR~~~---ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-----------------------a~v~~~l~~htD 154 (487)
T KOG0310|consen 101 VILRQLY---AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-----------------------AYVQAELSGHTD 154 (487)
T ss_pred HHHHHHh---hccCceeEEEecccCCeEEEecCCCceEEEEEcCC-----------------------cEEEEEecCCcc
Confidence 6666666 79999999999999999999999999999999998 333557889999
Q ss_pred ceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590 167 YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 243 (294)
Q Consensus 167 ~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~ 243 (294)
.|.|.+++ +.++++|+.||.|++||++.... .+.++ .|..+|..+.+-|.| ..+++++ .+.+++|
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--------~v~el-nhg~pVe~vl~lpsg--s~iasAg-Gn~vkVW 222 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--------RVVEL-NHGCPVESVLALPSG--SLIASAG-GNSVKVW 222 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCCc--------eeEEe-cCCCceeeEEEcCCC--CEEEEcC-CCeEEEE
Confidence 99999997 55899999999999999997531 33333 467899999999998 3666655 4679999
Q ss_pred eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
|+.++........ .|...|+|+++..++..|++|+-|+.+++||+.
T Consensus 223 Dl~~G~qll~~~~---~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 223 DLTTGGQLLTSMF---NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred EecCCceehhhhh---cccceEEEEEeecCCceEeecccccceEEEEcc
Confidence 9997753332222 477899999999999999999999999999964
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=9.3e-34 Score=200.14 Aligned_cols=254 Identities=16% Similarity=0.305 Sum_probs=205.0
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc------------------cccceecccCcceEEEEeCC
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE------------------KLHKSFVGHGDSINEIRTQP 63 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------------------~~~~~~~~h~~~v~~~~~~~ 63 (294)
+|+..|+.+..+-+|+ |||. ++|+|+.|..|+|.|++.. -.++++..|.++|+++.|+|
T Consensus 106 ~ylt~HK~~cR~aafs--~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFS--PDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred EEEeecccceeeeeeC--CCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 5778999999999998 9999 9999999999999998621 24567788999999999999
Q ss_pred CCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeec
Q 022590 64 LKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 143 (294)
Q Consensus 64 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 143 (294)
....|++|+.|++|+++|+......+.++.+ ....+|.+|.|+| .|.+|++|..-.++++||+.+.+...
T Consensus 183 -re~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfv------- 252 (430)
T KOG0640|consen 183 -RETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFV------- 252 (430)
T ss_pred -hhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEee-------
Confidence 8899999999999999999765444433322 2567899999999 99999999999999999999843321
Q ss_pred CCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee-c-CCCCeeE
Q 022590 144 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP-V-PECDIWF 219 (294)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~ 219 (294)
+...-..|.+.|+++.++ +++.++++.||.|++||--+.+ ++..+. . ....|.+
T Consensus 253 -------------sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---------Cv~t~~~AH~gsevcS 310 (430)
T KOG0640|consen 253 -------------SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---------CVRTIGNAHGGSEVCS 310 (430)
T ss_pred -------------ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH---------HHHHHHhhcCCceeee
Confidence 111335689999999997 8899999999999999987655 333332 2 2357899
Q ss_pred EEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc------------------------------------------
Q 022590 220 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS------------------------------------------ 257 (294)
Q Consensus 220 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------------------------ 257 (294)
..|..++ .++++.+.|..+++|.+.++..+....-.
T Consensus 311 a~Ftkn~--kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 311 AVFTKNG--KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred EEEccCC--eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 9999999 58999999999999999876533221110
Q ss_pred ---ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 258 ---HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 258 ---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
..+|.+.++.+.-||.+.-+++++.|-.+++|--+
T Consensus 389 ~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 389 ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 12467889999999999999999999999999765
No 73
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-34 Score=193.29 Aligned_cols=255 Identities=17% Similarity=0.237 Sum_probs=200.8
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---cccceecccCcceEEEEeC-CCCCceEEEeeCCCcEEEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQ-PLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~dg~i~vw 81 (294)
+|++-|..+... --|+ .||+++.|++|+|+...+. +++.++.+|.+||..++|. |--+.+||+++.||.|.||
T Consensus 9 ~H~D~IHda~lD--yygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 9 QHEDMIHDAQLD--YYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhHhhhh--hhcc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 899999988887 4577 9999999999999999764 4678899999999999994 5458899999999999999
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
.-.+++-. .......|...|++++|.|.+ +..|++++.||.|.+.+.+.... ......
T Consensus 86 ke~~g~w~-k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~--------------------w~t~ki 144 (299)
T KOG1332|consen 86 KEENGRWT-KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG--------------------WTTSKI 144 (299)
T ss_pred ecCCCchh-hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC--------------------ccchhh
Confidence 98877432 222233699999999999944 57789999999999999987311 112234
Q ss_pred eecCCCceeeccee-----c-----------ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590 161 ASVHSNYVDCNRWL-----G-----------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 224 (294)
Q Consensus 161 ~~~~~~~i~~~~~~-----~-----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 224 (294)
...|+-.|++++|. | ..|++|+.|..|+||+....+ ...-+.+..|...++.++|+|
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhcc
Confidence 56688888888885 2 469999999999999998762 223344788999999999999
Q ss_pred cCC--cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 225 DFH--YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 225 ~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
.-. ...+++++.||.+.||-.+........++-. .....+..+.||+.|+.|+.++.|+.|.+|.-.
T Consensus 218 ~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCCceeeEEecCCCcEEEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 752 2579999999999999887442222222221 344679999999999999999999999999643
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=201.77 Aligned_cols=248 Identities=17% Similarity=0.233 Sum_probs=210.1
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 81 (294)
..+++|...|+.+.++ |+.. .+++++.|-.|+||.............|.++|+.+..+| .+.||++++.||+..+.
T Consensus 255 ~~~~Gh~kki~~v~~~--~~~~-~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fs 330 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFH--KDLD-TVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFS 330 (506)
T ss_pred hhccCcceEEEEEEec--cchh-heeecCCcceEEeeccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEE
Confidence 4567999999999997 7777 899999999999999988888888899999999999999 99999999999999999
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
|++++..+...... ...-.+++.+|+| ++.+|.+|..||.+++||+.. +..+..+
T Consensus 331 d~~~g~~lt~vs~~-~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks-----------------------~~~~a~F 385 (506)
T KOG0289|consen 331 DISSGSQLTVVSDE-TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS-----------------------QTNVAKF 385 (506)
T ss_pred EccCCcEEEEEeec-cccceeEEeeEcC-CceEEeccCCCceEEEEEcCC-----------------------ccccccC
Confidence 99999988877621 1224589999999 999999999999999999998 4567788
Q ss_pred ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC-CCeeEEEEcccCCcceEEEEcCCC
Q 022590 162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREG 238 (294)
Q Consensus 162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg 238 (294)
.+|.++|..++|+ |-+|++++.|+.|++||+|..+ .+..+...+ .++.++.|.+.| .+|+.++.+=
T Consensus 386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---------n~kt~~l~~~~~v~s~~fD~SG--t~L~~~g~~l 454 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---------NFKTIQLDEKKEVNSLSFDQSG--TYLGIAGSDL 454 (506)
T ss_pred CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---------ccceeeccccccceeEEEcCCC--CeEEeeccee
Confidence 8999999999997 7899999999999999999765 233444332 368899999998 5888888777
Q ss_pred eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
.|++++-.+.+......+. .|.+..+.+.|....++++++|.|..++++.+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEEecccccceeeehhh--hcccccceeeecccceEEeeccchhheEEeec
Confidence 7777776665544444444 67788999999999999999999999998865
No 75
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-33 Score=206.44 Aligned_cols=247 Identities=22% Similarity=0.314 Sum_probs=198.7
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
.|...|.+++.+ +||+ |||+|+.|..|.||+.++.+.++.+++|.+.|.+++|-. +...|++++.|++|++|+++.
T Consensus 200 ~h~keil~~avS--~Dgk-ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 200 GHVKEILTLAVS--SDGK-YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cccceeEEEEEc--CCCc-EEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhH
Confidence 688899999998 9999 999999999999999999999999999999999999998 888999999999999999998
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
...+.++. +|.+.|.+|.-.. .+..+-+|+.|+++++|++.. .....+.++.
T Consensus 276 ~s~vetly---GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e------------------------esqlifrg~~ 327 (479)
T KOG0299|consen 276 LSYVETLY---GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE------------------------ESQLIFRGGE 327 (479)
T ss_pred hHHHHHHh---CCccceeeechhc-ccceEEeccccceeEEEeccc------------------------cceeeeeCCC
Confidence 88777777 7999999999886 667667777999999999964 2345677889
Q ss_pred Cceeecce-ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee-e--cCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 166 NYVDCNRW-LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-P--VPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 166 ~~i~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
+.+.|++| +...|++|+.+|.|.+|++...+..........+... . .....|++++..|.. +++++|+.+|.|+
T Consensus 328 ~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s--dL~asGS~~G~vr 405 (479)
T KOG0299|consen 328 GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS--DLLASGSWSGCVR 405 (479)
T ss_pred CCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC--ceEEecCCCCceE
Confidence 99999999 4899999999999999999877643222111111111 0 111378899999988 6999999999999
Q ss_pred EEeccCCC--ceeeeeccccccCCCeEEEEEccCCCEEEEe-ccCCcEEEE
Q 022590 242 VWELQSSP--PVLIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRW 289 (294)
Q Consensus 242 i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vw 289 (294)
+|.+..+- ......++ -.+.|++++|+++|+++++| +..-.+--|
T Consensus 406 LW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 406 LWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEeccccccccee
Confidence 99998872 22223332 34779999999999976665 444444333
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=5.3e-33 Score=220.95 Aligned_cols=235 Identities=23% Similarity=0.426 Sum_probs=205.4
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce-ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
+...+.+..|. ++ ++++++.+++|++|+..++..+.. +.+|.+.|.++++.. .+.+|++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~---~~--~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DG--FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee---cC--eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC
Confidence 56677888885 44 799999999999999999998888 999999999999987 789999999999999999999
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
|++...+. +|.+.|.++...+ ..+++|+.|.+|++|++.+ ...+..+.+|.
T Consensus 281 g~C~~~l~---gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n-----------------------~~~l~l~~~h~ 331 (537)
T KOG0274|consen 281 GECTHSLQ---GHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTN-----------------------GACLNLLRGHT 331 (537)
T ss_pred CcEEEEec---CCCceEEEEEccC---ceEeeccCCceEEEEeccC-----------------------cceEEEecccc
Confidence 99999999 7999999999854 6788899999999999997 55566777799
Q ss_pred CceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590 166 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 245 (294)
Q Consensus 166 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 245 (294)
.+|.++..+++++++|+.|++|++||+.+++ ++..+.+|...|+++.+.+. ..+++|+.|+.|++||+
T Consensus 332 ~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~---------cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 332 GPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK---------CLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDL 399 (537)
T ss_pred ccEEEEEecCCEEEEEecCceEEEEEhhhce---------eeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecC
Confidence 9999999999999999999999999999665 78999999999999988775 37999999999999999
Q ss_pred cCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 246 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
++.. .....+. +|..-+..+.+ .+++|++++.||.|++||.++
T Consensus 400 ~~~~-~c~~tl~--~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 400 RTKR-KCIHTLQ--GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred Cchh-hhhhhhc--CCccccccccc--ccceeEeccccccEEEeeccc
Confidence 9983 1333443 66677755554 567999999999999999864
No 77
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.1e-34 Score=205.05 Aligned_cols=250 Identities=15% Similarity=0.263 Sum_probs=197.2
Q ss_pred CCcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 1 MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 1 ~~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
++.|+.|.+.|+|++=. |..-..+++|+.||.|+|||+.+..+..+++.|.+.|..|++.. ..+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcC--cchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceee
Confidence 35678999999999976 65533799999999999999999999999999999999999976 56889999999999
Q ss_pred EEcCC---------------------------CceEEEeec--------cCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590 81 WNVQT---------------------------GICILIFAG--------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVK 125 (294)
Q Consensus 81 wd~~~---------------------------~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~ 125 (294)
|.++- |+.+..+.. +.--...|.++.|+|....+|++|+.|+.|.
T Consensus 134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 97432 111111111 0012345788889998888999999999999
Q ss_pred EEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCC
Q 022590 126 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT 203 (294)
Q Consensus 126 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 203 (294)
+||+++.. |+.... -...-+.++|+ +-.|+++..|..++.||++..+.
T Consensus 214 LyD~R~~~-----------------------Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~------ 263 (433)
T KOG0268|consen 214 LYDLRQAS-----------------------PLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR------ 263 (433)
T ss_pred EEecccCC-----------------------ccceee-eeccccceecCccccceeeccccccceehhhhhhcc------
Confidence 99999832 222211 12234567777 55788999999999999998654
Q ss_pred ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590 204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 283 (294)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 283 (294)
++..+..|...+..+.|+|.| .-+++|+.|.+|+||..+.+.... ..+......|.++.||.|.+|+++||.|
T Consensus 264 --p~~v~~dhvsAV~dVdfsptG--~EfvsgsyDksIRIf~~~~~~SRd---iYhtkRMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 264 --PLNVHKDHVSAVMDVDFSPTG--QEFVSGSYDKSIRIFPVNHGHSRD---IYHTKRMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred --cchhhcccceeEEEeccCCCc--chhccccccceEEEeecCCCcchh---hhhHhhhheeeEEEEeccccEEEecCCC
Confidence 677788888999999999999 579999999999999999875332 2233445679999999999999999999
Q ss_pred CcEEEEecC
Q 022590 284 GAIWRWDAI 292 (294)
Q Consensus 284 g~i~vw~~~ 292 (294)
+.|++|...
T Consensus 337 ~nvRlWka~ 345 (433)
T KOG0268|consen 337 GNVRLWKAK 345 (433)
T ss_pred cceeeeecc
Confidence 999999754
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=204.69 Aligned_cols=239 Identities=21% Similarity=0.341 Sum_probs=197.6
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
|.+..++|++++|. +++. ++++++.|+.+++|+++..+...++.+|++.|+++.|.. ....+++|+.|.+|++||+
T Consensus 215 LaGs~g~it~~d~d--~~~~-~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 215 LAGSLGNITSIDFD--SDNK-HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhccCCCcceeeec--CCCc-eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhh
Confidence 44566789999997 8888 899999999999999999999999999999999999998 5555999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
....+...+- ....+.+|..+ ...+++|..|++|++||++. ..+......
T Consensus 291 ~k~~C~kt~l----~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs-----------------------~~~~~sv~~ 340 (459)
T KOG0288|consen 291 QKAYCSKTVL----PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS-----------------------ADKTRSVPL 340 (459)
T ss_pred hhhheecccc----ccccccceEec---ceeeeecccccceEEEeccC-----------------------CceeeEeec
Confidence 9988887765 55667777775 46699999999999999998 334445555
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC----CCCeeEEEEcccCCcceEEEEcCC
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNRE 237 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~~~~~d 237 (294)
+. .|+++..+ +..+.+++.|.++.+.|+++.+ ....+... ....+.+.|||++ .|+++|+.|
T Consensus 341 gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e---------I~~~~sA~g~k~asDwtrvvfSpd~--~YvaAGS~d 408 (459)
T KOG0288|consen 341 GG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE---------IRQTFSAEGFKCASDWTRVVFSPDG--SYVAAGSAD 408 (459)
T ss_pred Cc-ceeeEeeccCCeEEeeecCCCceeeeeccccc---------EEEEeeccccccccccceeEECCCC--ceeeeccCC
Confidence 54 78877665 8889999999999999999775 23333322 2458889999999 699999999
Q ss_pred CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
|.|+||++.+++........ .....|++++|+|.|..|++++.++.+.+|.
T Consensus 409 gsv~iW~v~tgKlE~~l~~s--~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 409 GSVYIWSVFTGKLEKVLSLS--TSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CcEEEEEccCceEEEEeccC--CCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999854444433 3334799999999999999999999999993
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.4e-32 Score=220.39 Aligned_cols=256 Identities=24% Similarity=0.400 Sum_probs=206.3
Q ss_pred ccccCceeEEEEEeecCCCceEEEEee--cCCeEEEEEcCC------------ccccceecccCcceEEEEeCCCCCceE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGG--INGIIRVIDVSN------------EKLHKSFVGHGDSINEIRTQPLKPSLV 69 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~l 69 (294)
+..++..|++++.+ |+|. .+|+|+ .||.++||+.+. .+.+.+...|.+.|+|+.|+| |+++|
T Consensus 9 v~H~~~~IfSIdv~--pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~l 84 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVH--PDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYL 84 (942)
T ss_pred cccCCeeEEEEEec--CCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeE
Confidence 34566789999987 9999 999999 999999998642 234556678999999999999 99999
Q ss_pred EEeeCCCcEEEEEcCC------------------CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 70 VSASKDESVRLWNVQT------------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 70 ~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
|+|+.|+.|.||.... .+....+. +|.+.|..++|+| ++.+|++++.|++|.+|+.++
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~---~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR---GHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe---cCCCccceeccCC-CccEEEEecccceEEEEcccc
Confidence 9999999999998862 12334444 7999999999999 999999999999999999998
Q ss_pred cccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCC----------
Q 022590 132 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP---------- 199 (294)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~---------- 199 (294)
+ .....+.+|...|..+.|+ |++|++-+.|++|++|++.+.....
T Consensus 161 F-----------------------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 161 F-----------------------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred c-----------------------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 3 4577889999999999998 9999999999999999966521100
Q ss_pred ---------------------------------CCCCceeeeeeecCCCCeeEEEEcccC-----------Cc----ceE
Q 022590 200 ---------------------------------GEGTADILQKYPVPECDIWFIKFSCDF-----------HY----NAA 231 (294)
Q Consensus 200 ---------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~----~~l 231 (294)
....+..-..+-+|..++.+++|+|.- ++ ..+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 001122234456788899999999831 11 278
Q ss_pred EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
|+|+.|+.|.||.....+|..+..- -....|.+++|+|||..|+.+|.||+|.+..+++
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~---lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHN---LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhh---hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 9999999999999977765444322 3346899999999999999999999999998864
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-33 Score=213.18 Aligned_cols=253 Identities=21% Similarity=0.328 Sum_probs=205.0
Q ss_pred ccCceeE---EEEEeecCCCceEEEEeecCCeEEEEEcCCcc------ccceecccCcceEEEEeCCCCCceEEEeeCCC
Q 022590 6 QKEESFY---TVSWACNVDGIPFLVAGGINGIIRVIDVSNEK------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE 76 (294)
Q Consensus 6 ~h~~~v~---~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 76 (294)
+|...|. ++..+. |.++ +|++|+.||.|++|+..... ...+++.|.+.|+.+.... +++.|++++.|-
T Consensus 19 qn~~~v~~~~~Lq~da-~~~r-yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDA-PNGR-YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDT 95 (735)
T ss_pred hccccccchhhccccC-CCCc-eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCc
Confidence 3444455 455552 5666 99999999999999986432 3678889999999999998 888999999999
Q ss_pred cEEEEEcCCCc--eEEEeeccCCCCCceeEEEE-ecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590 77 SVRLWNVQTGI--CILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 153 (294)
Q Consensus 77 ~i~vwd~~~~~--~~~~~~~~~~~~~~v~~l~~-~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (294)
+|++|+...+. +...+. .|...|.|+++ .+ +..++|+||.|+.|.+||++.+.......+.
T Consensus 96 TVK~W~~~~~~~~c~stir---~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n------------ 159 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIR---THKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFN------------ 159 (735)
T ss_pred eEEEeecccCcchhHhhhh---cccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhcc------------
Confidence 99999998773 455555 69999999999 55 8889999999999999999975331111111
Q ss_pred eeeceEEee-cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590 154 VQFPVFIAS-VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 230 (294)
Q Consensus 154 ~~~~~~~~~-~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 230 (294)
..+...+. ++..+|.+++.+ +..+++|+..+.+++||.++.+ .+..+.+|...|..+..+++| ..
T Consensus 160 -~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~---------kimkLrGHTdNVr~ll~~dDG--t~ 227 (735)
T KOG0308|consen 160 -NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK---------KIMKLRGHTDNVRVLLVNDDG--TR 227 (735)
T ss_pred -ccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc---------ceeeeeccccceEEEEEcCCC--Ce
Confidence 11222333 788899999987 5699999999999999999876 577788999999999999999 68
Q ss_pred EEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+++++.||+|++||+...++... +. .|...|.++..+|+-.++.+|+.||.|+.=|+++
T Consensus 228 ~ls~sSDgtIrlWdLgqQrCl~T--~~--vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 228 LLSASSDGTIRLWDLGQQRCLAT--YI--VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EeecCCCceEEeeeccccceeee--EE--eccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 99999999999999988764443 33 6777899999999999999999999999877764
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.8e-31 Score=177.52 Aligned_cols=253 Identities=17% Similarity=0.227 Sum_probs=196.6
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-----ccceecccCcceEEEEeCCC---CCceEEEeeC-C
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHGDSINEIRTQPL---KPSLVVSASK-D 75 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~-d 75 (294)
+.|++.|+|.+|+ |+|+ ++++|+.|.+|++.-..... .-..+..|.+.|..++|..+ .+.+|++++. |
T Consensus 86 khhkgsiyc~~ws--~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 86 KHHKGSIYCTAWS--PCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred cccCccEEEEEec--CccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 3789999999998 9999 99999999999997654332 22356779999999999652 3557777654 6
Q ss_pred CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590 76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 155 (294)
Q Consensus 76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (294)
..|.+-|-.+|+....+. +|.+.|.++--- ++-++++|+.|.+|++||++-..........+.
T Consensus 163 c~iy~tdc~~g~~~~a~s---ghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~------------ 225 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALS---GHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH------------ 225 (350)
T ss_pred ceEEEeecCCCCcceeec---CCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCccc------------
Confidence 778888888999888888 799999887532 678999999999999999997322111100000
Q ss_pred eceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590 156 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 233 (294)
Q Consensus 156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 233 (294)
.-.-....|.+++.+ |++|++|-.|....+||++.+. .++.+..|...|.++.|+|.. .++++
T Consensus 226 ----~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r---------~iq~f~phsadir~vrfsp~a--~yllt 290 (350)
T KOG0641|consen 226 ----DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR---------MIQRFHPHSADIRCVRFSPGA--HYLLT 290 (350)
T ss_pred ----CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc---------eeeeeCCCccceeEEEeCCCc--eEEEE
Confidence 000112445555554 9999999999999999999775 788899999999999999998 69999
Q ss_pred EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
++.|..|++-|++..-...........|+..+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 291 ~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 291 CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999986522222222233778889999999999889999999999999765
No 82
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=209.29 Aligned_cols=233 Identities=21% Similarity=0.312 Sum_probs=192.9
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC-----CceEEEeec
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-----GICILIFAG 94 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~ 94 (294)
|.++ ++++|...|.+.+||+.....+.+.++|.+.|.+++.+| ++..+++|+.|.+|++||..- +...+.+..
T Consensus 422 pgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 422 PGDR-YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred CCCc-eEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 6555 777777777777777777777777889999999999999 889999999999999999741 111111110
Q ss_pred ----cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceee
Q 022590 95 ----AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 170 (294)
Q Consensus 95 ----~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (294)
.-.-...|.|+.++| ++.+|+++-.|+++++|-+.+ ..-...+.+|.-||.|
T Consensus 500 ~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt-----------------------lKFflsLYGHkLPV~s 555 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT-----------------------LKFFLSLYGHKLPVLS 555 (888)
T ss_pred ccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc-----------------------eeeeeeecccccceeE
Confidence 002567899999999 999999999999999999998 4456788999999999
Q ss_pred ccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590 171 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248 (294)
Q Consensus 171 ~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 248 (294)
+..+ +..+++|+.|..|++|-+.=+. +-..+-.|...|.++.|.|.. ..+.+++.|+.|+-||-.+-
T Consensus 556 mDIS~DSklivTgSADKnVKiWGLdFGD---------CHKS~fAHdDSvm~V~F~P~~--~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSADKNVKIWGLDFGD---------CHKSFFAHDDSVMSVQFLPKT--HLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred EeccCCcCeEEeccCCCceEEeccccch---------hhhhhhcccCceeEEEEcccc--eeEEEecCcceEEeechhhh
Confidence 8775 8899999999999999998665 556677888999999999977 58899999999999998886
Q ss_pred CceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+ ....+. +|...|++++.+|+|.+++++|.|..|++|....
T Consensus 625 e--~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 625 E--EIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred h--hheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 5 344444 8889999999999999999999999999998653
No 83
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=193.69 Aligned_cols=254 Identities=17% Similarity=0.272 Sum_probs=201.0
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC----------------ccccceecccCcceEEEEeCCCCCceE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----------------EKLHKSFVGHGDSINEIRTQPLKPSLV 69 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------------~~~~~~~~~h~~~v~~~~~~~~~~~~l 69 (294)
.|.+.++.+.-+.-++.. +.++-+..|.|+||++.. .+++.++.+|...=..|+|||.....|
T Consensus 149 ~h~g~~NRvr~~~~~~~~-~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEV-LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccCCcc-eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 567777777776444444 777888899999999742 256778889999999999999666679
Q ss_pred EEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCC
Q 022590 70 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 149 (294)
Q Consensus 70 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 149 (294)
++|..-+.|++|...++.-..--..+.+|+..|-.|+|+|.....|++|+.||+|+|||+|...
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~---------------- 291 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP---------------- 291 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC----------------
Confidence 9999999999999988765444344447999999999999889999999999999999999842
Q ss_pred CCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC
Q 022590 150 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 227 (294)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (294)
..+......|...|+.++|+ ..+|++|+.||+++|||+|..+ ..+++..++.|..+|+++.|+|...
T Consensus 292 -----~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~------~~~pVA~fk~Hk~pItsieW~p~e~ 360 (440)
T KOG0302|consen 292 -----KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK------SGQPVATFKYHKAPITSIEWHPHED 360 (440)
T ss_pred -----ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc------CCCcceeEEeccCCeeEEEeccccC
Confidence 23444558899999999998 4489999999999999999876 3467889999999999999999876
Q ss_pred cceEEEEcCCCeEEEEeccCCCc--------------e-eeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEe
Q 022590 228 YNAAAIGNREGKIFVWELQSSPP--------------V-LIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWD 290 (294)
Q Consensus 228 ~~~l~~~~~dg~i~i~d~~~~~~--------------~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~ 290 (294)
..+++++.|.+|.+||+.-..- + +...+.| .....+..+.|+++- .+|++.+.|| +.||.
T Consensus 361 -s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVH-qGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 361 -SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVH-QGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred -ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEe-cchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 6888999999999999864321 0 0011111 123568889999863 4788888998 55664
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-32 Score=191.40 Aligned_cols=249 Identities=17% Similarity=0.280 Sum_probs=210.9
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEc------CC----------------------------------cc
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV------SN----------------------------------EK 44 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~------~~----------------------------------~~ 44 (294)
.+|.+.|++++|. +.+. ++++++.|++-.||.. .. ..
T Consensus 187 ~GH~GSVNsikfh--~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv 263 (481)
T KOG0300|consen 187 TGHTGSVNSIKFH--NSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV 263 (481)
T ss_pred cccccceeeEEec--cccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence 3899999999997 7787 9999999999999962 10 02
Q ss_pred ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcE
Q 022590 45 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 124 (294)
Q Consensus 45 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i 124 (294)
++..+.+|.+.|.+..|-. +++.+++++.|.+..+||+++++.+..+. +|....+.++-+| ...++++++.|.+.
T Consensus 264 Pl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt---GHd~ELtHcstHp-tQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILT---GHDSELTHCSTHP-TQRLVVTSSRDTTF 338 (481)
T ss_pred eeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceecccc---CcchhccccccCC-cceEEEEeccCcee
Confidence 3456788999999999998 99999999999999999999999999888 7999999999999 88999999999999
Q ss_pred EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCC
Q 022590 125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGT 203 (294)
Q Consensus 125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 203 (294)
++||++.. ...+..+.+|...|+++.|. ++.+++|+.|.+|++||+++...
T Consensus 339 RLWDFRea----------------------I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs------ 390 (481)
T KOG0300|consen 339 RLWDFREA----------------------IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS------ 390 (481)
T ss_pred Eeccchhh----------------------cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC------
Confidence 99999962 34577899999999999998 89999999999999999997543
Q ss_pred ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC--CEEEEec
Q 022590 204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG--STILSCC 281 (294)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~ 281 (294)
++..+.. ..+++.++.+... .+++.--.+..|++||++........+....+|...|+|++|..+. .-|++++
T Consensus 391 --plATIRt-dS~~NRvavs~g~--~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcG 465 (481)
T KOG0300|consen 391 --PLATIRT-DSPANRVAVSKGH--PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCG 465 (481)
T ss_pred --cceeeec-CCccceeEeecCC--ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccccccc
Confidence 3444433 4568888888877 5889899999999999998764444444456899999999998654 3588999
Q ss_pred cCCcEEEEecCCC
Q 022590 282 EDGAIWRWDAIPT 294 (294)
Q Consensus 282 ~dg~i~vw~~~~~ 294 (294)
.|..+.=|++..+
T Consensus 466 FDR~v~gW~in~p 478 (481)
T KOG0300|consen 466 FDRMVAGWKINTP 478 (481)
T ss_pred ccceeeeeEeccc
Confidence 9999999998753
No 85
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=181.73 Aligned_cols=204 Identities=21% Similarity=0.326 Sum_probs=177.9
Q ss_pred ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcE
Q 022590 45 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 124 (294)
Q Consensus 45 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i 124 (294)
..+.+..++++|..+.|+- ++++.++++.|.+|++|+...+.+++++. +|...|..++.+. ++..|++|+.|..+
T Consensus 9 r~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYs---ghG~EVlD~~~s~-Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYS---GHGHEVLDAALSS-DNSKFASCGGDKAV 83 (307)
T ss_pred hceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeec---CCCceeeeccccc-cccccccCCCCceE
Confidence 3456788999999999999 99999999999999999999999999998 7999999999998 88889999999999
Q ss_pred EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC
Q 022590 125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG 202 (294)
Q Consensus 125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 202 (294)
.+||+.+ ......+.+|.+.|+.+.|+ ...+++|+.|..+++||.++..
T Consensus 84 ~vwDV~T-----------------------Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s------ 134 (307)
T KOG0316|consen 84 QVWDVNT-----------------------GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS------ 134 (307)
T ss_pred EEEEccc-----------------------CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC------
Confidence 9999999 55678899999999999998 6789999999999999999874
Q ss_pred CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc
Q 022590 203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE 282 (294)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 282 (294)
..+++.+......|.++..+.. .+++|+.||+++.||++.++. ... --..||++++|+++++.++.++.
T Consensus 135 -~ePiQildea~D~V~Si~v~~h----eIvaGS~DGtvRtydiR~G~l--~sD----y~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 135 -FEPIQILDEAKDGVSSIDVAEH----EIVAGSVDGTVRTYDIRKGTL--SSD----YFGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred -CCccchhhhhcCceeEEEeccc----EEEeeccCCcEEEEEeeccee--ehh----hcCCcceeEEecCCCCEEEEeec
Confidence 3356666666777888887754 589999999999999999852 111 22368999999999999999999
Q ss_pred CCcEEEEecCC
Q 022590 283 DGAIWRWDAIP 293 (294)
Q Consensus 283 dg~i~vw~~~~ 293 (294)
|+++++.|-++
T Consensus 204 ~stlrLlDk~t 214 (307)
T KOG0316|consen 204 DSTLRLLDKET 214 (307)
T ss_pred cceeeecccch
Confidence 99999988654
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=5.7e-31 Score=193.56 Aligned_cols=239 Identities=16% Similarity=0.226 Sum_probs=200.2
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 88 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 88 (294)
..+.++... |... .+++|+.|..+.++|...++.+..++||...|+.+.++| +...+++++.|..|+||.......
T Consensus 220 pgi~ald~~--~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDII--PSSS-KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeec--CCCC-cceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccC
Confidence 346666665 5534 899999999999999999999999999999999999999 888999999999999999987776
Q ss_pred EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590 89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 168 (294)
Q Consensus 89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (294)
..... .|..+|+.+..+| .+.||++++.||+..+.|++++.... ........-.+
T Consensus 296 ~~~~~---~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt---------------------~vs~~~s~v~~ 350 (506)
T KOG0289|consen 296 PTSSR---PHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLT---------------------VVSDETSDVEY 350 (506)
T ss_pred ccccc---cccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEE---------------------EEeecccccee
Confidence 66666 6999999999999 99999999999999999999843211 11111122346
Q ss_pred eeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590 169 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 246 (294)
Q Consensus 169 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 246 (294)
++..|+ |.+|.+|..|+.+++||+.++. ....+++|..+|..++|+.+| .+|+++.+|+.|++||++
T Consensus 351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~---------~~a~Fpght~~vk~i~FsENG--Y~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---------NVAKFPGHTGPVKAISFSENG--YWLATAADDGSVKLWDLR 419 (506)
T ss_pred EEeeEcCCceEEeccCCCceEEEEEcCCcc---------ccccCCCCCCceeEEEeccCc--eEEEEEecCCeEEEEEeh
Confidence 777776 8899999999999999999765 578889999999999999999 799999999999999999
Q ss_pred CCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 247 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
..+......+. ...++.++.|.+.|.+|+.++.|=.|++++
T Consensus 420 Kl~n~kt~~l~---~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 420 KLKNFKTIQLD---EKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred hhcccceeecc---ccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 98754444443 224799999999999999998887777776
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=7.2e-32 Score=199.08 Aligned_cols=217 Identities=19% Similarity=0.361 Sum_probs=185.5
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-------ccceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-------LHKSFVGHGDSINEIRTQPLKPSLVVSASKD 75 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 75 (294)
.|..|++.-++++|++...| .|++++.|+.|++||+.... +...+.+|...|..++|++.+..++++++.|
T Consensus 172 ~L~gH~~eg~glsWn~~~~g--~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEG--TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred EEEeecccccccccccccce--eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC
Confidence 45688888899999965555 69999999999999996432 3456789999999999999999999999999
Q ss_pred CcEEEEEcCC--CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590 76 ESVRLWNVQT--GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 153 (294)
Q Consensus 76 g~i~vwd~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (294)
+.+.|||+++ .++..... +|.++|+|++|+|.++.+||+|+.|++|++||+|..
T Consensus 250 ~~L~iwD~R~~~~~~~~~~~---ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------------------- 305 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSVK---AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL--------------------- 305 (422)
T ss_pred CeEEEEEcCCCCCCCccccc---ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc---------------------
Confidence 9999999995 34444444 799999999999999999999999999999999984
Q ss_pred eeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCC-----CCCCCceeeeeeecCCCCeeEEEEccc
Q 022590 154 VQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCD 225 (294)
Q Consensus 154 ~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~ 225 (294)
..++..+.+|...|.++.|+ ...|++++.|+.+.+||+..-... ....+..++....+|...|..+.|+|.
T Consensus 306 -~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ 384 (422)
T KOG0264|consen 306 -NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN 384 (422)
T ss_pred -ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC
Confidence 45788999999999999998 678999999999999999765332 233456677888899999999999999
Q ss_pred CCcceEEEEcCCCeEEEEeccC
Q 022590 226 FHYNAAAIGNREGKIFVWELQS 247 (294)
Q Consensus 226 ~~~~~l~~~~~dg~i~i~d~~~ 247 (294)
.. -.+++.++|+.+.||+...
T Consensus 385 eP-W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 385 EP-WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CC-eEEEEecCCceEEEeeccc
Confidence 86 6788999999999999874
No 88
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=214.74 Aligned_cols=240 Identities=18% Similarity=0.349 Sum_probs=198.8
Q ss_pred eeEEEEEeecCCCceEEEEeecCCeEEEEEcCC---ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590 10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 86 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 86 (294)
....+.|. +-+.+ +||+++.+|.|.+||+.. .+.+..|..|+..++++.|++....+|++|+.||+|++||++..
T Consensus 89 S~~DVkW~-~~~~N-lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWG-QLYSN-LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhcccc-cchhh-hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence 34567787 44555 999999999999999987 66777899999999999999989999999999999999999999
Q ss_pred ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590 87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (294)
+....+. +....|..++|+|..++.|+++...|.+++||+|.. ..+...+.+|.+
T Consensus 167 ~S~~t~~---~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp----------------------~r~~~k~~AH~G 221 (839)
T KOG0269|consen 167 KSKSTFR---SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP----------------------DRCEKKLTAHNG 221 (839)
T ss_pred ccccccc---ccchhhhceeeccCCCceEEEecCCceEEEeeccCc----------------------hhHHHHhhcccC
Confidence 8888887 578899999999988999999999999999999984 345667889999
Q ss_pred ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc--CCCeEEE
Q 022590 167 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFV 242 (294)
Q Consensus 167 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg~i~i 242 (294)
+|.|+.|+ +.+||+|+.|+.|+|||+.+.+. .....+. ...++..++|-|... ..|++++ .|-.|+|
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-------~~~~tIn-Tiapv~rVkWRP~~~-~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-------KPKHTIN-TIAPVGRVKWRPARS-YHLATCSMVVDTSVHV 292 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCc-------cceeEEe-ecceeeeeeeccCcc-chhhhhhccccceEEE
Confidence 99999998 77999999999999999986542 1222222 246789999999987 5677665 4778999
Q ss_pred EeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEEeccCCcEEE
Q 022590 243 WELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWR 288 (294)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~v 288 (294)
||++..- ++...+ ..|...++.++|.. |...|.+++.||.|..
T Consensus 293 WDvrRPY-IP~~t~--~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 293 WDVRRPY-IPYATF--LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred Eeecccc-ccceee--eccCccccceeccCCCceeeEeecCccHHHH
Confidence 9998863 233333 37888999999976 4568889999998754
No 89
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-30 Score=182.07 Aligned_cols=264 Identities=16% Similarity=0.268 Sum_probs=196.6
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcceEEEEeCCC-CCceEEEeeCCCcEEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRL 80 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~v 80 (294)
+|++-|.++.|. +.|+ .+|+++.|++|+|||.... .+....+.|.+.|..+.|.+. =|+.+|+++.|+++.|
T Consensus 11 ~h~DlihdVs~D--~~GR-RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFD--FYGR-RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeec--ccCc-eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 899999999998 6788 9999999999999996443 355677899999999999653 4889999999999999
Q ss_pred EEcCC------C---ceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590 81 WNVQT------G---ICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 150 (294)
Q Consensus 81 wd~~~------~---~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
|.-.. + .....+. ...+.|++++|.|. -+-.+++++.||.+|||+.........-.+..+-
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~---DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei------ 158 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLV---DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI------ 158 (361)
T ss_pred eeecccccccccceeEEEEEee---cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh------
Confidence 97521 1 1122333 57789999999993 3678999999999999998763322111111000
Q ss_pred CceeeeceEEeecCCCceeeccee-----cceEEEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590 151 TKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 220 (294)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 220 (294)
+........+..+..|+.|+ ..+|++|+.+ +.+.||....... ....+.+++.+..+|+.+
T Consensus 159 ----~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-----Kw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 159 ----QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-----KWLKVAELPDHTDPIRDI 229 (361)
T ss_pred ----hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-----eeeeehhcCCCCCcceee
Confidence 00011223356677788886 5678888776 5788888765543 444667778899999999
Q ss_pred EEcccCC--cceEEEEcCCCeEEEEeccCCC---------------ceeeeecc-ccccCCCeEEEEEccCCCEEEEecc
Q 022590 221 KFSCDFH--YNAAAIGNREGKIFVWELQSSP---------------PVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCE 282 (294)
Q Consensus 221 ~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~ 282 (294)
+|.|+-. +.+||+++.|| |+||.++... ...+..+. +..|+++|..+.|+-.|..|++.|.
T Consensus 230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 9999743 46799999999 9999997411 11222222 5689999999999999999999999
Q ss_pred CCcEEEEec
Q 022590 283 DGAIWRWDA 291 (294)
Q Consensus 283 dg~i~vw~~ 291 (294)
||+|++|..
T Consensus 309 DG~VRLWka 317 (361)
T KOG2445|consen 309 DGCVRLWKA 317 (361)
T ss_pred Cceeeehhh
Confidence 999999975
No 90
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.9e-32 Score=203.68 Aligned_cols=212 Identities=24% Similarity=0.339 Sum_probs=173.8
Q ss_pred cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC-CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC
Q 022590 44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 122 (294)
Q Consensus 44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg 122 (294)
+.+.++.+|+..|+++.|.|..+.+|++++.|+.|+||++.. +++++.|. +|..+|.+++|++ .+..|++++.|+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~---gH~k~Vrd~~~s~-~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK---GHRKPVRDASFNN-CGTSFLSASFDR 280 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh---cchhhhhhhhccc-cCCeeeeeecce
Confidence 456788999999999999998889999999999999999987 78888888 7999999999998 889999999999
Q ss_pred cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCC
Q 022590 123 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSP 199 (294)
Q Consensus 123 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~ 199 (294)
.+++||++++.. ...+ .-...+.|+.|+ .+.|++|+.|+.|+.||+|+++
T Consensus 281 ~lKlwDtETG~~-----------------------~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--- 333 (503)
T KOG0282|consen 281 FLKLWDTETGQV-----------------------LSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--- 333 (503)
T ss_pred eeeeeccccceE-----------------------EEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---
Confidence 999999999532 1111 123455677775 4799999999999999999876
Q ss_pred CCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee-------------------------
Q 022590 200 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA------------------------- 254 (294)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------- 254 (294)
.++++..|-..+..+.|-+++ ..+++.++|+.+++|+.+..-+....
T Consensus 334 ------vvqeYd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 334 ------VVQEYDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM 405 (503)
T ss_pred ------HHHHHHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc
Confidence 688888888999999999999 58999999999999998754211000
Q ss_pred -------ec----------ccccc--CCCeEEEEEccCCCEEEEeccCCcEEEEecCCC
Q 022590 255 -------RL----------SHAQS--KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 294 (294)
Q Consensus 255 -------~~----------~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 294 (294)
.. ...+| .+.-..+.|||||++|++|+.||.+.+||.+++
T Consensus 406 dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 00 01112 144567899999999999999999999998763
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.1e-32 Score=192.83 Aligned_cols=240 Identities=18% Similarity=0.244 Sum_probs=197.7
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
-++++|.|++|+ .|.. +||+|+.||.|++|.+.+|.+++.|. +|+..|+|+.|+. ++..+.+++.|.++++.-+.
T Consensus 261 Mmd~aVlci~FS--RDsE-MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 261 MMDDAVLCISFS--RDSE-MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred ecccceEEEeec--ccHH-HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccc
Confidence 357899999998 8888 99999999999999999999999997 8999999999999 88899999999999999999
Q ss_pred CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
+|++++.+. +|.+.|+...|.+ +++.+++++.||+|++|+..+....... . ..+.
T Consensus 337 SGK~LKEfr---GHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tf----k-----------------~~~~ 391 (508)
T KOG0275|consen 337 SGKCLKEFR---GHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTF----K-----------------PLGT 391 (508)
T ss_pred cchhHHHhc---CccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhc----c-----------------CCCC
Confidence 999999998 7999999999999 9999999999999999999884322111 0 1112
Q ss_pred CCceeecce---ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec---CCCCeeEEEEcccCCcceEEEEcCCC
Q 022590 165 SNYVDCNRW---LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREG 238 (294)
Q Consensus 165 ~~~i~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~~~~~dg 238 (294)
..+|..+.. +...++++...+++.+.++... .++.+.. ..+...+...+|.| .++++.++|+
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ----------vVrsfsSGkREgGdFi~~~lSpkG--ewiYcigED~ 459 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ----------VVRSFSSGKREGGDFINAILSPKG--EWIYCIGEDG 459 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEeccce----------EEeeeccCCccCCceEEEEecCCC--cEEEEEccCc
Confidence 223333322 3678899999999999998643 3444332 34566678899998 6999999999
Q ss_pred eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
.++.|.+.+++. ...+. -|...+..++-+|..+.||+-++||.+++|.
T Consensus 460 vlYCF~~~sG~L--E~tl~--VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 460 VLYCFSVLSGKL--ERTLP--VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEEeecCce--eeeee--cccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999873 33443 5667788999999999999999999999995
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.1e-30 Score=196.18 Aligned_cols=262 Identities=17% Similarity=0.253 Sum_probs=189.9
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc----cccee-cccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESV 78 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i 78 (294)
+..|...|.++++. |.|. .|++|+.|..|++||+.... ..+.+ ......|++++|++ .+..|++.+.....
T Consensus 163 l~hgtk~Vsal~~D--p~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 163 LKHGTKIVSALAVD--PSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQA 238 (641)
T ss_pred ccCCceEEEEeeec--CCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcce
Confidence 56788899999997 8898 99999999999999986532 22222 23455899999999 55556666666789
Q ss_pred EEEEcCCCceEEEe---------eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCC
Q 022590 79 RLWNVQTGICILIF---------AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 149 (294)
Q Consensus 79 ~vwd~~~~~~~~~~---------~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 149 (294)
+|+|-...+..... ...++|...++|.+|+|.....|++++.||++++||+.......+-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV----------- 307 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV----------- 307 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE-----------
Confidence 99997543333222 2345899999999999988899999999999999999874321100
Q ss_pred CCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC
Q 022590 150 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 227 (294)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (294)
.......+..-+++.++|+ +.+||+|+.||.|.+|+....... ..-.+.........|+++.||++|
T Consensus 308 ------ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~----p~~~vk~AH~~g~~Itsi~FS~dg- 376 (641)
T KOG0772|consen 308 ------IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR----PVMKVKDAHLPGQDITSISFSYDG- 376 (641)
T ss_pred ------EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc----cceEeeeccCCCCceeEEEecccc-
Confidence 0011112344567888887 889999999999999998654321 112233333334489999999999
Q ss_pred cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc------CCcEEEEecCC
Q 022590 228 YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE------DGAIWRWDAIP 293 (294)
Q Consensus 228 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~vw~~~~ 293 (294)
++|++-+.|+.+++||++..+.. +.....-....+-+.++|||+.++|++|.. .|.+.+||..+
T Consensus 377 -~~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 377 -NYLLSRGFDDTLKVWDLRQFKKP-LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred -chhhhccCCCceeeeeccccccc-hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 69999999999999999987532 222222233456788999999999999853 46688888653
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=184.78 Aligned_cols=243 Identities=17% Similarity=0.313 Sum_probs=206.7
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+.+|++.|+.++-. .+++.+.+++.|.+.+||.+++++++.++.+|.+.|++++|++ .+.++++++.|++-.||..
T Consensus 144 ~~GHkDGiW~Vaa~---~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 144 LEGHKDGIWHVAAD---STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hcccccceeeehhh---cCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHH
Confidence 45899999999984 4556999999999999999999999999999999999999999 8999999999999999962
Q ss_pred ------CCC----------------------------------ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc
Q 022590 84 ------QTG----------------------------------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 123 (294)
Q Consensus 84 ------~~~----------------------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~ 123 (294)
... -++..+ .+|.+.|.+..|.. ++..+++++.|.+
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l---tgH~~vV~a~dWL~-gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL---TGHRAVVSACDWLA-GGQQMVTASWDRT 295 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee---eccccceEehhhhc-Ccceeeeeecccc
Confidence 110 011222 37999999999998 8999999999999
Q ss_pred EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC
Q 022590 124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 201 (294)
Q Consensus 124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~ 201 (294)
..+||+.+ ..++..+.+|...++-++-+ ..++++++.|.+.++||++.
T Consensus 296 AnlwDVEt-----------------------ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe------- 345 (481)
T KOG0300|consen 296 ANLWDVET-----------------------GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE------- 345 (481)
T ss_pred ceeeeecc-----------------------CceeccccCcchhccccccCCcceEEEEeccCceeEeccchh-------
Confidence 99999999 66788889999988887776 66888999999999999994
Q ss_pred CCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec
Q 022590 202 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC 281 (294)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 281 (294)
....+..+++|...+++..|..+. .+++|+.|.+|++||+++... ....+. ...+++.++.+..++.++.--
T Consensus 346 -aI~sV~VFQGHtdtVTS~vF~~dd---~vVSgSDDrTvKvWdLrNMRs-plATIR---tdS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 346 -AIQSVAVFQGHTDTVTSVVFNTDD---RVVSGSDDRTVKVWDLRNMRS-PLATIR---TDSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred -hcceeeeecccccceeEEEEecCC---ceeecCCCceEEEeeeccccC-cceeee---cCCccceeEeecCCceEEecc
Confidence 344678899999999999999886 599999999999999998753 223332 236799999999988999988
Q ss_pred cCCcEEEEecC
Q 022590 282 EDGAIWRWDAI 292 (294)
Q Consensus 282 ~dg~i~vw~~~ 292 (294)
.+..|++||++
T Consensus 418 DNRqvRlfDln 428 (481)
T KOG0300|consen 418 DNRQVRLFDLN 428 (481)
T ss_pred CCceEEEEecC
Confidence 88899999986
No 94
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.2e-30 Score=190.87 Aligned_cols=235 Identities=16% Similarity=0.224 Sum_probs=187.9
Q ss_pred CCceEEEEeecCCeEEEEEcCCcc---------------------ccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590 21 DGIPFLVAGGINGIIRVIDVSNEK---------------------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 79 (294)
Q Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~---------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 79 (294)
.|+ |+|.|+.|..|.|||++-.. .-..-.+|++.|.+|+|+..-.+.||+|+.|.+|+
T Consensus 191 ~gN-yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGN-YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred Ccc-eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 355 99999999999999985210 00112469999999999987788999999999999
Q ss_pred EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590 80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 159 (294)
Q Consensus 80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (294)
+||+.++++...+. .|...|.++.|+|..+.+|++|+.|+++.+.|.|.... ..
T Consensus 270 lWD~~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-----------------------s~ 323 (463)
T KOG0270|consen 270 LWDVDTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-----------------------SG 323 (463)
T ss_pred EEEcCCCCcceehh---hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-----------------------cC
Confidence 99999999999988 59999999999999999999999999999999996110 11
Q ss_pred EeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590 160 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 236 (294)
Q Consensus 160 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 236 (294)
..-...+.|-.+.|+ ...++++..||+++-+|+|... .++.....|..+|.++++++.-. .++++++.
T Consensus 324 ~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--------~~vwt~~AHd~~ISgl~~n~~~p-~~l~t~s~ 394 (463)
T KOG0270|consen 324 KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--------KPVWTLKAHDDEISGLSVNIQTP-GLLSTAST 394 (463)
T ss_pred ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--------CceeEEEeccCCcceEEecCCCC-cceeeccc
Confidence 111234556667775 7789999999999999999864 37888999999999999998876 68999999
Q ss_pred CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEeccCCcEEEEecCC
Q 022590 237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~~ 293 (294)
|+.|++|++...++..+.... -.-+...|+++.|+-. +|+.|+..+.++|||+.+
T Consensus 395 d~~Vklw~~~~~~~~~v~~~~--~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPKSVKEHS--FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred cceEEEEeecCCCCccccccc--ccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 999999999877654443333 2223467778888754 567788888999999864
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.5e-29 Score=168.22 Aligned_cols=247 Identities=18% Similarity=0.217 Sum_probs=188.5
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-----------cc----cceecccCcceEEEEeCCCCCceEEEe
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----------KL----HKSFVGHGDSINEIRTQPLKPSLVVSA 72 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------~~----~~~~~~h~~~v~~~~~~~~~~~~l~s~ 72 (294)
...|.+++|. |.|. +.++|+...+.+|-....- ++ -+.-+.|.+.|.|.+|+| .++++++|
T Consensus 32 sqairav~fh--p~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatg 107 (350)
T KOG0641|consen 32 SQAIRAVAFH--PAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATG 107 (350)
T ss_pred hhheeeEEec--CCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEec
Confidence 3467777775 9998 9999999999998754321 11 123356899999999999 99999999
Q ss_pred eCCCcEEEEEcCCCceE-----EEeeccCCCCCceeEEEEec---CCCceEEeee-cCCcEEEEeccccccccccceeec
Q 022590 73 SKDESVRLWNVQTGICI-----LIFAGAGGHRNEVLSVDFHP---SDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWT 143 (294)
Q Consensus 73 ~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~l~~~~---~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~ 143 (294)
+.|.+|++..++...+. ..+. .|.+.|..++|.. .++.+|++++ .|..|++-|...
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~n---mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~------------ 172 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFN---MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR------------ 172 (350)
T ss_pred CCCceEEEEecccccccccCcceeee---ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC------------
Confidence 99999999876543221 2233 5999999999964 1345677665 466677777766
Q ss_pred CCCCCCCCceeeeceEEeecCCCceeec-ceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEE
Q 022590 144 DLPSKFPTKYVQFPVFIASVHSNYVDCN-RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 222 (294)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 222 (294)
..+...+.+|.+.|.++ .|++-.+++|+.|.+|++||++-......... ....-......|.+++.
T Consensus 173 -----------g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~--~~~~~glessavaav~v 239 (350)
T KOG0641|consen 173 -----------GQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN--DFHDGGLESSAVAAVAV 239 (350)
T ss_pred -----------CCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccC--cccCCCcccceeEEEEE
Confidence 55678889999998876 67899999999999999999996642111000 00000112356888999
Q ss_pred cccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 223 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 223 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
.|.+ ++|++|-.|....+||++.+. .+.++. .|...|+++.|+|...||++++.|..|++=|+.
T Consensus 240 dpsg--rll~sg~~dssc~lydirg~r--~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 240 DPSG--RLLASGHADSSCMLYDIRGGR--MIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCCc--ceeeeccCCCceEEEEeeCCc--eeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 9998 799999999999999999987 344444 788999999999999999999999999998875
No 96
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8e-30 Score=189.02 Aligned_cols=232 Identities=19% Similarity=0.268 Sum_probs=187.0
Q ss_pred cCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590 31 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 110 (294)
Q Consensus 31 ~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 110 (294)
....|.+|.+..........--.++|.+++-+| .+.+|+.|+..|.|.+|.+.+|..+..+. +|-..|+|+.|+-
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~---aHYQ~ITcL~fs~- 133 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLS---AHYQSITCLKFSD- 133 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHH---hhccceeEEEEeC-
Confidence 345688888766554443444568899999999 99999999899999999999999998887 7999999999997
Q ss_pred CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee----cceEEEeeCCCe
Q 022590 111 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNE 186 (294)
Q Consensus 111 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~ 186 (294)
++.+|++|+.||.|.+|++...-... ......|...+..|.-+|+.+... ..++++++.|.+
T Consensus 134 dgs~iiTgskDg~V~vW~l~~lv~a~--------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t 199 (476)
T KOG0646|consen 134 DGSHIITGSKDGAVLVWLLTDLVSAD--------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT 199 (476)
T ss_pred CCcEEEecCCCccEEEEEEEeecccc--------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence 99999999999999999987632111 111356788999999999999885 468999999999
Q ss_pred EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce------------eee
Q 022590 187 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV------------LIA 254 (294)
Q Consensus 187 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------~~~ 254 (294)
+++||+..+. ++..+.. ...+.++++.|.. ..+++|+++|.|.+.++...... ...
T Consensus 200 ~k~wdlS~g~---------LLlti~f-p~si~av~lDpae--~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~ 267 (476)
T KOG0646|consen 200 IKLWDLSLGV---------LLLTITF-PSSIKAVALDPAE--RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ 267 (476)
T ss_pred EEEEEeccce---------eeEEEec-CCcceeEEEcccc--cEEEecCCcceEEeeehhcCCcccccccccccccccce
Confidence 9999999775 4555444 3568899999998 68999999999999988654311 111
Q ss_pred eccccccCC--CeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 255 RLSHAQSKS--PIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 255 ~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.....+|.+ +|+|++++-||.+|++|+.||.++|||+.+
T Consensus 268 ~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 268 INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 111336666 999999999999999999999999999864
No 97
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=3.6e-30 Score=197.86 Aligned_cols=273 Identities=20% Similarity=0.254 Sum_probs=195.0
Q ss_pred EEEEEeecCCCceEEEEeecCCeEEEEEcCCcc------ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
++..|+..|..+++|+.+..||.|.++|....+ ..+.+..|...|.++.|.| ...+|++++.|.++++||+.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 346777777778799999999999999976432 2355678999999999999 889999999999999999999
Q ss_pred CceEEE--eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce------eecCCCCCCCCceeeec
Q 022590 86 GICILI--FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF------TWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 86 ~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 157 (294)
.+.... +. +|...|.+++|.|.+...|++|+.||.|.|||++-........+ ...+.+ .+.......
T Consensus 132 s~l~G~~~~~---GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p--tpskp~~kr 206 (720)
T KOG0321|consen 132 SRLVGGRLNL---GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP--TPSKPLKKR 206 (720)
T ss_pred ceeecceeec---ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC--CCCchhhcc
Confidence 887766 44 79999999999999999999999999999999997442111111 111111 122222222
Q ss_pred eEEeecCCC----ceeeccee-cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeecC---CCCeeEEEEcccCCc
Q 022590 158 VFIASVHSN----YVDCNRWL-GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVP---ECDIWFIKFSCDFHY 228 (294)
Q Consensus 158 ~~~~~~~~~----~i~~~~~~-~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~ 228 (294)
......+.. .|+.+.|- ...|++++. |+.|++||++............ ...++.+ ...+.++.....|
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~~~~~t~skrs~G~~nL~lDssG-- 283 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-SDKYPTHSKRSVGQVNLILDSSG-- 283 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc-ccCccCcccceeeeEEEEecCCC--
Confidence 333333443 35556664 788998887 9999999999876544333222 2222333 2334445554444
Q ss_pred ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.+|++.+.|+.|++|++.+........+.+......-..-..+|++.+|++|+.|...++|.+..
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 67888888999999999987655555544333333344556789999999999999999999864
No 98
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=179.78 Aligned_cols=225 Identities=18% Similarity=0.301 Sum_probs=184.4
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
.+-+|++.|+++.|+ .+|. +||+|..+|.|+||+..++.....+...-+.+.-+.|+| ....|++|+.||.+-+|.
T Consensus 101 eltgHKDSVt~~~Fs--hdgt-lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFS--HDGT-LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred EecCCCCceEEEEEc--cCce-EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEE
Confidence 455899999999998 8898 999999999999999999988888876677889999999 899999999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccccee------ecC------------
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT------WTD------------ 144 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------~~~------------ 144 (294)
+.++...+.+. +|..++++=.|.| ++..++++..||+|++|++.+.......... ...
T Consensus 177 ip~~~~~kv~~---Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 177 IPSQALCKVMS---GHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred CCCcceeeEec---CCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 99887777777 7999999999999 8999999999999999999985443322100 000
Q ss_pred -------------------CC---CCCCC------------c--------------------eeeeceEEeecCCCceee
Q 022590 145 -------------------LP---SKFPT------------K--------------------YVQFPVFIASVHSNYVDC 170 (294)
Q Consensus 145 -------------------~~---~~~~~------------~--------------------~~~~~~~~~~~~~~~i~~ 170 (294)
.+ ..... . .....+.....|+..|..
T Consensus 253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK 332 (399)
T ss_pred CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence 00 00000 0 000112233458888999
Q ss_pred cceec-ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590 171 NRWLG-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 246 (294)
Q Consensus 171 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 246 (294)
+.|.+ .+|++++.+|.|+.||.|+++ ++..+.+|...|..++++|+. +++++++.|+..++|+..
T Consensus 333 l~w~~t~~l~t~c~~g~v~~wDaRtG~---------l~~~y~GH~~~Il~f~ls~~~--~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLNTDYLLTACANGKVRQWDARTGQ---------LKFTYTGHQMGILDFALSPQK--RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCcchheeeccCceEEeeeccccc---------eEEEEecCchheeEEEEcCCC--cEEEEecCCCeEEEEecC
Confidence 99985 899999999999999999887 789999999999999999998 699999999999999864
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.9e-29 Score=195.52 Aligned_cols=233 Identities=20% Similarity=0.316 Sum_probs=193.9
Q ss_pred cccCceeEE-EEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 5 DQKEESFYT-VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 5 ~~h~~~v~~-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
.+|.+-|.. +++..+..+ .+++|+.|+.|.+|......+...+++|+..|.+++... ++. +++|+.|.++++|..
T Consensus 54 ~~~~g~i~~~i~y~e~~~~--~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 54 EGPKGFIANSICYAESDKG--RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred ccCcceeeccceeccccCc--ceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc
Confidence 356677766 777642233 599999999999999999999999999999999999876 555 999999999999986
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
+++...++ +|+..|++++.-| ++ .++||+.|.+|++|.-.+ .+..+.+
T Consensus 130 --~~l~~~l~---gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~~~-------------------------~l~tf~g 177 (745)
T KOG0301|consen 130 --GELVYSLQ---GHTASVWAVASLP-EN-TYVTGSADKTIKLWKGGT-------------------------LLKTFSG 177 (745)
T ss_pred --hhhhcccC---CcchheeeeeecC-CC-cEEeccCcceeeeccCCc-------------------------hhhhhcc
Confidence 45555566 7999999999998 65 799999999999998765 3567888
Q ss_pred CCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 164 HSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 164 ~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
|.+.|+.+++- +..|++++.||.|++|++. ++ .+.++.+|..-++++...+++ ..++++++|+++++
T Consensus 178 HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge---------~l~~~~ghtn~vYsis~~~~~--~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GE---------VLLEMHGHTNFVYSISMALSD--GLIVSTGEDRTLRI 245 (745)
T ss_pred chhheeeeEEecCCCeEeecCCceEEEEecc-Cc---------eeeeeeccceEEEEEEecCCC--CeEEEecCCceEEE
Confidence 99999999996 6699999999999999994 33 688889999999999966666 58999999999999
Q ss_pred EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
|+.. +......++ ...|.++.+-++|. +++|+.||.||||..+
T Consensus 246 W~~~--e~~q~I~lP----ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 246 WKKD--ECVQVITLP----TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eecC--ceEEEEecC----ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 9987 333333333 23689999988886 7788899999999765
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-30 Score=198.69 Aligned_cols=248 Identities=19% Similarity=0.346 Sum_probs=205.1
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc--cccceecccCcceEEEEe-CCCCCceEEEeeCCCcEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRT-QPLKPSLVVSASKDESVR 79 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~dg~i~ 79 (294)
.++.|.+.|+.+... .+|+ .|++++.|-+|++|+...+ -+..++..|.+-|.|+++ .+ +..++|+|+-|+.|.
T Consensus 68 sme~HsDWVNDiiL~--~~~~-tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILC--GNGK-TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhHhHHhhHHhh--cCCC-ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEE
Confidence 467899999999998 6676 7999999999999999877 577888999999999999 55 888999999999999
Q ss_pred EEEcCCCc--eEEEeec------cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590 80 LWNVQTGI--CILIFAG------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 151 (294)
Q Consensus 80 vwd~~~~~--~~~~~~~------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
+||++++. .+..+.. ..++...|++++.++ .+..+++|+..+.+++||.++
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt-------------------- 202 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT-------------------- 202 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEecccc--------------------
Confidence 99999772 3332221 127889999999998 889999999999999999999
Q ss_pred ceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590 152 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 229 (294)
Q Consensus 152 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (294)
...+..+.+|...|.++..+ |..+++++.||+|++||+.... ++..+..|...++++..+|+- .
T Consensus 203 ---~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr---------Cl~T~~vH~e~VWaL~~~~sf--~ 268 (735)
T KOG0308|consen 203 ---CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR---------CLATYIVHKEGVWALQSSPSF--T 268 (735)
T ss_pred ---ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc---------eeeeEEeccCceEEEeeCCCc--c
Confidence 66688889999999999886 8999999999999999998554 788899999999999999887 6
Q ss_pred eEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 230 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.+++|+.||.|..=|+++... ..... ....+|..+..+...+-+-+++.|+.|+-|..++
T Consensus 269 ~vYsG~rd~~i~~Tdl~n~~~-~tlic---k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 269 HVYSGGRDGNIYRTDLRNPAK-STLIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred eEEecCCCCcEEecccCCchh-heEee---cCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 899999999999999998532 22222 1224577777765444446677888888887653
No 101
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-30 Score=203.16 Aligned_cols=242 Identities=16% Similarity=0.300 Sum_probs=190.5
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc----ccceecc---cCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVG---HGDSINEIRTQPLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 81 (294)
...++|+.. ++-. .++.++.. .++||...... +...++. -.-.+..+.|.....++||+++..|.|.+|
T Consensus 40 ~~~nAIs~n--r~~~-qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 40 AKANAISVN--RDIN-QIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred cccceEeec--CCcc-eeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 445566665 6665 55555543 67888765432 1111111 112456788987788999999999999999
Q ss_pred EcCC---CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 82 NVQT---GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 82 d~~~---~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
|+.. .+.+..|. .|+..++++.|++...++|++|+.||.|++||++. ....
T Consensus 116 dlnk~~rnk~l~~f~---EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-----------------------~~S~ 169 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFN---EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-----------------------KKSK 169 (839)
T ss_pred ecCccccchhhhHhh---hhccceeeeeeccCCccEEEecCCCceEEEEeeec-----------------------cccc
Confidence 9987 44445555 79999999999999999999999999999999998 4445
Q ss_pred EEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590 159 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 235 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 235 (294)
..+.+....|..+.|+ ++.|+++...|.+++||+|...+ ....+..|.+++.++.|+|++ .+||+|+
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r--------~~~k~~AH~GpV~c~nwhPnr--~~lATGG 239 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR--------CEKKLTAHNGPVLCLNWHPNR--EWLATGG 239 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh--------HHHHhhcccCceEEEeecCCC--ceeeecC
Confidence 5666678889999997 78999999999999999998654 677788999999999999977 7999999
Q ss_pred CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEec--cCCcEEEEecCC
Q 022590 236 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCC--EDGAIWRWDAIP 293 (294)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~--~dg~i~vw~~~~ 293 (294)
.|+.|+|||..+.+......+. ...+|..++|-|+.+ .||+++ .|-.|+|||++-
T Consensus 240 RDK~vkiWd~t~~~~~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred CCccEEEEeccCCCccceeEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 9999999999987665555553 347899999999875 466665 477899999974
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.8e-29 Score=197.26 Aligned_cols=249 Identities=16% Similarity=0.169 Sum_probs=203.5
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
.|....+.++|. |+|+ +|++++.||.|++|+.... +...++..+...|.+++... .+|++|+.+++|.+|.+.
T Consensus 11 aht~G~t~i~~d--~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 11 AHTGGLTLICYD--PDGE-FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hccCceEEEEEc--CCCC-EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCC
Confidence 688889999998 9999 9999999999999997665 44555555888899998754 589999999999999999
Q ss_pred CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
+++.-..+. ..+-++.+++|+. ++.+++.|+.|-.|++-++.. ......+.+|
T Consensus 85 s~~~~~iL~---Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D-----------------------~s~~~~lrgh 137 (933)
T KOG1274|consen 85 SGEEDTILA---RFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDD-----------------------SSQEKVLRGH 137 (933)
T ss_pred CCCccceee---eeeccceEEEEec-CCcEEEeecCceeEEEEeccc-----------------------cchheeeccc
Confidence 887655554 3677899999998 999999999999999999988 4557788999
Q ss_pred CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
.++|.++.|+ +++||+.+.||.+++||+.++................. ...+..++|+|++ ..++....|+.|++
T Consensus 138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~-s~i~~~~aW~Pk~--g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL-SRICTRLAWHPKG--GTLAVPPVDNTVKV 214 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc-cceeeeeeecCCC--CeEEeeccCCeEEE
Confidence 9999999998 88999999999999999998764332221111111111 3456778999997 46888888999999
Q ss_pred EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
|+....+.....+.. .+...+..++|+|+|+|||+++.||.|.|||.+
T Consensus 215 y~r~~we~~f~Lr~~--~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 215 YSRKGWELQFKLRDK--LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EccCCceeheeeccc--ccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 999998755544444 444559999999999999999999999999987
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=189.67 Aligned_cols=245 Identities=17% Similarity=0.247 Sum_probs=187.1
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc------------ceecccCcceEEEEeCCCCCceEEEeeC
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH------------KSFVGHGDSINEIRTQPLKPSLVVSASK 74 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 74 (294)
....|++++|+ +.|. .|++.+.....+|+|-+..+.. ...++|...++|.+|+|.+...+++++.
T Consensus 213 E~h~i~sl~ys--~Tg~-~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~ 289 (641)
T KOG0772|consen 213 ETHQINSLQYS--VTGD-QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY 289 (641)
T ss_pred cccccceeeec--CCCC-eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC
Confidence 34689999998 7888 6666667778999996543222 2346899999999999988889999999
Q ss_pred CCcEEEEEcCCCc-eEEEeec--cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590 75 DESVRLWNVQTGI-CILIFAG--AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 151 (294)
Q Consensus 75 dg~i~vwd~~~~~-~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
||++|+||+...+ .+..+.. ..+..-+++.++|+| ++..||+|+.||.|.+|+.+....
T Consensus 290 DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v----------------- 351 (641)
T KOG0772|consen 290 DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV----------------- 351 (641)
T ss_pred CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc-----------------
Confidence 9999999997654 3333332 234556789999999 889999999999999999865221
Q ss_pred ceeeeceEEeecCCC--ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec--CCCCeeEEEEccc
Q 022590 152 KYVQFPVFIASVHSN--YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCD 225 (294)
Q Consensus 152 ~~~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~ 225 (294)
......-..|.. .|+|+.|+ |++|++-+.|+++++||++..+.. +..... ..-+-+.++|||+
T Consensus 352 ---~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp--------L~~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 352 ---RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP--------LNVRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred ---ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc--------hhhhcCCCccCCCCccccCCC
Confidence 223445566776 89999997 999999999999999999987642 222111 1234556899999
Q ss_pred CCcceEEEEc------CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590 226 FHYNAAAIGN------REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 289 (294)
Q Consensus 226 ~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw 289 (294)
. .++++|. ..|.+.+||..+.+.+ .++. -....|..+.|+|.-+.|+.|+.||.++||
T Consensus 421 ~--kli~TGtS~~~~~~~g~L~f~d~~t~d~v--~ki~--i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 421 D--KLILTGTSAPNGMTAGTLFFFDRMTLDTV--YKID--ISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred c--eEEEecccccCCCCCceEEEEeccceeeE--EEec--CCCceEEEEeecchhhheeeecCCCceEEE
Confidence 8 5888875 3578999999887643 3333 224679999999998899999999999987
No 104
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.8e-29 Score=194.01 Aligned_cols=250 Identities=14% Similarity=0.239 Sum_probs=205.8
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
.|+..|.+++++ .+.. .+++| ..+.+++|+.++.++++++.. +-+.+..|.| +++++++|...|.+.++|+.+
T Consensus 371 GHR~dVRsl~vS--~d~~-~~~Sg-a~~SikiWn~~t~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 371 GHRSDVRSLCVS--SDSI-LLASG-AGESIKIWNRDTLKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred cchhheeEEEee--cCce-eeeec-CCCcEEEEEccCcceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeeh
Confidence 899999999998 5554 44554 567999999999999999974 4889999999 889999999999999999999
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
...+..++ +|.+.|+.++.+| ++..+++|+.|.+|++||+.-..... .. ..+...........-+
T Consensus 444 ~~l~Eti~---AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~----------gt-~~k~lsl~~~rtLel~ 508 (888)
T KOG0306|consen 444 ASLVETIR---AHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVP----------GT-QKKVLSLKHTRTLELE 508 (888)
T ss_pred hhhhhhhh---ccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccC----------cc-cceeeeeccceEEecc
Confidence 99888888 7999999999999 88899999999999999987632100 00 0000111111222345
Q ss_pred Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590 166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 243 (294)
Q Consensus 166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~ 243 (294)
+.|.|+.++ +.+|+++--|.++++|-+.+.+ ..-.+-+|.-||.++.++|++ .++++|+.|..|++|
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---------FflsLYGHkLPV~smDIS~DS--klivTgSADKnVKiW 577 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---------FFLSLYGHKLPVLSMDISPDS--KLIVTGSADKNVKIW 577 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccCeEEEEEeccee---------eeeeecccccceeEEeccCCc--CeEEeccCCCceEEe
Confidence 678888887 8899999999999999998654 567778899999999999999 599999999999999
Q ss_pred eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
-++-+.+ -..+- +|...|.++.|-|....++++|.|+.|+-||-+
T Consensus 578 GLdFGDC--HKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 578 GLDFGDC--HKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred ccccchh--hhhhh--cccCceeEEEEcccceeEEEecCcceEEeechh
Confidence 9988863 33333 788999999999999999999999999999853
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=4e-29 Score=175.63 Aligned_cols=214 Identities=20% Similarity=0.278 Sum_probs=174.8
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc----------c-----ceecccCcceEEEEeCCCCCceE
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL----------H-----KSFVGHGDSINEIRTQPLKPSLV 69 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----------~-----~~~~~h~~~v~~~~~~~~~~~~l 69 (294)
..|.+.|+++.... ..|+ |+++|+.||.|.+||+++... . ..-.+|.-.|.++.|-|.+...+
T Consensus 40 r~HgGsvNsL~id~-tegr-ymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDL-TEGR-YMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccCCCccceeeecc-ccce-EEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 47999999999984 4677 999999999999999975421 0 11235888999999999998999
Q ss_pred EEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC--CCceEEeeecCCcEEEEeccccccccccceeecCCCC
Q 022590 70 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 147 (294)
Q Consensus 70 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 147 (294)
.+++.|.+++|||..+-+....|. ..+.|++-+++|- ...++|+|..|-.|++.|+..
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S---------------- 177 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS---------------- 177 (397)
T ss_pred ecccccceEEEeecccceeeEEee----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC----------------
Confidence 999999999999999999988887 7888999999883 235788888999999999998
Q ss_pred CCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCC------CCCCCceeeeeeecCCCCee
Q 022590 148 KFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQS------PGEGTADILQKYPVPECDIW 218 (294)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~i~ 218 (294)
......+.+|.+.|.++.|+ .-.|++|+.||.|++||++..... ......+.++....|.+.+.
T Consensus 178 -------Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 178 -------GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred -------CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence 55677899999999999998 346889999999999999865210 00112223344566778899
Q ss_pred EEEEcccCCcceEEEEcCCCeEEEEeccCCC
Q 022590 219 FIKFSCDFHYNAAAIGNREGKIFVWELQSSP 249 (294)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 249 (294)
.++|+.++ .++++.+.|..+++|+..+++
T Consensus 251 gla~tSd~--~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 251 GLAWTSDA--RYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeeecccc--hhhhhccCccceEEeecccCc
Confidence 99999999 689999999999999998765
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=5.5e-30 Score=181.20 Aligned_cols=214 Identities=21% Similarity=0.285 Sum_probs=167.1
Q ss_pred ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC------------Cc---eEEEeeccCCCCCceeEEEEecCC
Q 022590 47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT------------GI---CILIFAGAGGHRNEVLSVDFHPSD 111 (294)
Q Consensus 47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~------------~~---~~~~~~~~~~~~~~v~~l~~~~~~ 111 (294)
..+..|..++.+.+|+| +|.++++|+.|..|+|.|++. +. .-..+..+..|..+|+++.|+| .
T Consensus 106 ~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred EEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 34567999999999999 999999999999999999872 11 0012223337999999999999 8
Q ss_pred CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEE
Q 022590 112 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL 189 (294)
Q Consensus 112 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~i 189 (294)
..+|++|+.|++|++||+..... +..........+|.+++|+ |+++++|..-..+++
T Consensus 184 e~ILiS~srD~tvKlFDfsK~sa---------------------KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSA---------------------KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred hheEEeccCCCeEEEEecccHHH---------------------HHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 89999999999999999987221 0111112233456667765 999999999999999
Q ss_pred ecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEE
Q 022590 190 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTA 269 (294)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 269 (294)
||+++-+.... ...-..|...|+++.+++.+ .+.++++.||.|++||--++++ +..+........|.+..
T Consensus 243 Ydv~T~Qcfvs------anPd~qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 243 YDVNTYQCFVS------ANPDDQHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAV 312 (430)
T ss_pred EeccceeEeee------cCcccccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEE
Confidence 99998654211 11234567889999999999 6899999999999999888764 34444334457899999
Q ss_pred EccCCCEEEEeccCCcEEEEecCC
Q 022590 270 MSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 270 ~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
|..+|+|+++.+.|..+++|++.+
T Consensus 313 Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 313 FTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred EccCCeEEeecCCcceeeeeeecC
Confidence 999999999999999999999865
No 107
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=4.9e-29 Score=191.70 Aligned_cols=257 Identities=18% Similarity=0.286 Sum_probs=183.2
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce--ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
.|...|..+.|. | |+..|++++.|.++++||+++.++... +.+|...|.+++|.|.+...|++|+.||.|.|||+
T Consensus 98 aH~nAifDl~wa--p-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 98 AHKNAIFDLKWA--P-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred cccceeEeeccC--C-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 799999999998 6 555999999999999999999988776 88999999999999999999999999999999998
Q ss_pred CCCce--E----------------------EEeeccCCCCCceeE---EEEecCCCceEEeeec-CCcEEEEeccccccc
Q 022590 84 QTGIC--I----------------------LIFAGAGGHRNEVLS---VDFHPSDIYRIASCGM-DNTVKIWSMKEFWTY 135 (294)
Q Consensus 84 ~~~~~--~----------------------~~~~~~~~~~~~v~~---l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~ 135 (294)
+-... . +.......+...|.+ +.+.. |+..||+++. |+.|+|||++.....
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccc
Confidence 63320 0 001111134444444 33444 7788998887 999999999985433
Q ss_pred cccceeecCCCCCCCCceeeeceEEeecC---CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee
Q 022590 136 VEKSFTWTDLPSKFPTKYVQFPVFIASVH---SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY 210 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 210 (294)
.... ......+..| .-.+.++..+ |.+|++.+.|+.|++|++......+ ...+
T Consensus 254 ~r~e---------------p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-------~~~~ 311 (720)
T KOG0321|consen 254 YRQE---------------PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-------VAEF 311 (720)
T ss_pred cccC---------------CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-------hhhc
Confidence 2221 0111111112 2234444444 7888888889999999998765422 2222
Q ss_pred ecCCC--CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEE
Q 022590 211 PVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIW 287 (294)
Q Consensus 211 ~~~~~--~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~ 287 (294)
.++.. --..-..+|++ .++++|+.|...++|.+.+.+......+ +|...|++++|.|.. .-++++++|..++
T Consensus 312 sg~~~~sf~vks~lSpd~--~~l~SgSsd~~ayiw~vs~~e~~~~~l~---Ght~eVt~V~w~pS~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 312 SGKLNSSFYVKSELSPDD--CSLLSGSSDEQAYIWVVSSPEAPPALLL---GHTREVTTVRWLPSATTPVATCSDDFRVK 386 (720)
T ss_pred cCcccceeeeeeecCCCC--ceEeccCCCcceeeeeecCccCChhhhh---CcceEEEEEeeccccCCCceeeccCcceE
Confidence 22111 11123467888 5899999999999999998764333333 777889999998843 3467779999999
Q ss_pred EEecCC
Q 022590 288 RWDAIP 293 (294)
Q Consensus 288 vw~~~~ 293 (294)
+|++.+
T Consensus 387 iW~l~~ 392 (720)
T KOG0321|consen 387 IWRLSN 392 (720)
T ss_pred EEeccC
Confidence 999853
No 108
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=199.22 Aligned_cols=210 Identities=16% Similarity=0.295 Sum_probs=167.1
Q ss_pred CCcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 1 MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 1 ~~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
+|-+.+|.+.|..|+|+ .++ +|++++.|.+|+||++...++++.|. |.+-|+|++|+|.|.+++++|+-||.|||
T Consensus 362 ~~ef~GHt~DILDlSWS--Kn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 362 FCEFKGHTADILDLSWS--KNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRL 436 (712)
T ss_pred hhhhhccchhheecccc--cCC--eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEE
Confidence 35567999999999997 443 89999999999999999999999888 99999999999999999999999999999
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
|++...+.+.-.. -..-|++++|.| +|+..+.|+.+|.+++|+....+......+.... ..
T Consensus 437 WsI~d~~Vv~W~D----l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~--------------~K 497 (712)
T KOG0283|consen 437 WSISDKKVVDWND----LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN--------------KK 497 (712)
T ss_pred eecCcCeeEeehh----hhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeecc--------------Cc
Confidence 9998777665554 558899999999 8999999999999999999985433322221110 01
Q ss_pred eecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC--CCeeEEEEcccCCcceEEEEc
Q 022590 161 ASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWFIKFSCDFHYNAAAIGN 235 (294)
Q Consensus 161 ~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~ 235 (294)
-..|. .|+.+.|. .+.+++.+.|..|||||.+... ++..+++.. ..-....|+.+| .+|++++
T Consensus 498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~---------lv~KfKG~~n~~SQ~~Asfs~Dg--k~IVs~s 565 (712)
T KOG0283|consen 498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD---------LVHKFKGFRNTSSQISASFSSDG--KHIVSAS 565 (712)
T ss_pred cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh---------hhhhhcccccCCcceeeeEccCC--CEEEEee
Confidence 11233 78888886 4468888999999999997554 344444322 223456788888 5899999
Q ss_pred CCCeEEEEecc
Q 022590 236 REGKIFVWELQ 246 (294)
Q Consensus 236 ~dg~i~i~d~~ 246 (294)
+|..|++|+..
T Consensus 566 eDs~VYiW~~~ 576 (712)
T KOG0283|consen 566 EDSWVYIWKND 576 (712)
T ss_pred cCceEEEEeCC
Confidence 99999999973
No 109
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=4.3e-28 Score=168.00 Aligned_cols=210 Identities=17% Similarity=0.258 Sum_probs=174.9
Q ss_pred eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEE
Q 022590 48 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 127 (294)
Q Consensus 48 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~w 127 (294)
.+++|+.+++.+.++. ++.+|++++.|.+..||--.+|+.+..+. +|.+.|+|+..+. +...+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~---GHtGavW~~Did~-~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYD---GHTGAVWCCDIDW-DSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeec---CCCceEEEEEecC-CcceeeeccccceeEEE
Confidence 4688999999999999 99999999999999999999999999999 8999999999997 88899999999999999
Q ss_pred eccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-----CCeEEEecCCCCCCCCC
Q 022590 128 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-----DNEIVLWEPKMKEQSPG 200 (294)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-----d~~i~iwd~~~~~~~~~ 200 (294)
|+.+++. +.. ...+.+|..+.|+ |++++.+.. .+.|.++|++.....
T Consensus 80 Dv~tGk~-----------------------la~-~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~-- 133 (327)
T KOG0643|consen 80 DVETGKQ-----------------------LAT-WKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD-- 133 (327)
T ss_pred EcCCCcE-----------------------EEE-eecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh--
Confidence 9998532 222 2346678888887 666666543 367999999865421
Q ss_pred CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590 201 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 280 (294)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 280 (294)
.....++..++.+...++.+.|.|.+ .+|++|.++|.|.+||+++++. .+.... .|...|+.|+++||..+++++
T Consensus 134 ~~s~ep~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~-~v~s~~--~h~~~Ind~q~s~d~T~FiT~ 208 (327)
T KOG0643|consen 134 IDSEEPYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKE-LVDSDE--EHSSKINDLQFSRDRTYFITG 208 (327)
T ss_pred hcccCceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCce-eeechh--hhccccccccccCCcceEEec
Confidence 11233577788888999999999999 5999999999999999999853 222323 677799999999999999999
Q ss_pred ccCCcEEEEecCC
Q 022590 281 CEDGAIWRWDAIP 293 (294)
Q Consensus 281 ~~dg~i~vw~~~~ 293 (294)
+.|.+-++||+.+
T Consensus 209 s~Dttakl~D~~t 221 (327)
T KOG0643|consen 209 SKDTTAKLVDVRT 221 (327)
T ss_pred ccCccceeeeccc
Confidence 9999999999864
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=7.7e-29 Score=192.24 Aligned_cols=238 Identities=18% Similarity=0.304 Sum_probs=200.8
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc--ceecccCcceEE-EEeCCCCCceEEEeeCCCcE
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH--KSFVGHGDSINE-IRTQPLKPSLVVSASKDESV 78 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg~i 78 (294)
|.+..|+..|..++.. ++. .+++++.||++++|+-..++.. ..+.+|.+-|.. +++.+.++..+++|+.|.+|
T Consensus 8 ~~l~gH~~DVr~v~~~---~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVT---DGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred EEeccCccchheeEec---CCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 4567999999999874 344 7999999999999997655543 346677787777 88876456679999999999
Q ss_pred EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
.+|...+..++..+. +|.+.|.++.... ++. +++|+.|.++++|...+. .
T Consensus 84 ~v~~~~~~~P~~~Lk---gH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l-------------------------~ 133 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLK---GHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGEL-------------------------V 133 (745)
T ss_pred EEEecCCCCchhhhh---ccccceeeeecCC-cCc-eEecccccceEEecchhh-------------------------h
Confidence 999999999999988 7999999999775 555 999999999999998872 3
Q ss_pred EEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590 159 FIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 237 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 237 (294)
..+.+|+..|.++..- .+.+++|+.|.+|++|.-.+ .++.+.+|...|..+++-++. .+++++.|
T Consensus 134 ~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~-----------~l~tf~gHtD~VRgL~vl~~~---~flScsND 199 (745)
T KOG0301|consen 134 YSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGT-----------LLKTFSGHTDCVRGLAVLDDS---HFLSCSND 199 (745)
T ss_pred cccCCcchheeeeeecCCCcEEeccCcceeeeccCCc-----------hhhhhccchhheeeeEEecCC---CeEeecCC
Confidence 4588999999988774 67999999999999998643 678889999999999999986 58999999
Q ss_pred CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
|.|++|++... ...+.. +|...|.++...+++..++++++|++++||+..
T Consensus 200 g~Ir~w~~~ge---~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 200 GSIRLWDLDGE---VLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ceEEEEeccCc---eeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99999999443 333333 888999999988889999999999999999864
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4e-28 Score=172.35 Aligned_cols=255 Identities=18% Similarity=0.189 Sum_probs=185.2
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc------------------------------------c
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL------------------------------------H 46 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------~ 46 (294)
.|+.|.+.|++++|+ .||+ +||+.+.|++|++|++++-.. +
T Consensus 81 ~LKgH~~~vt~~~Fs--SdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFS--SDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhccCCceeeeEEc--CCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 578999999999998 8999 999999999999999864210 0
Q ss_pred cee-----------------------cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590 47 KSF-----------------------VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 103 (294)
Q Consensus 47 ~~~-----------------------~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 103 (294)
..+ +.|.-.|-.+-... ++.+|++++.|..|.+|++. |+.+..+.. ....-+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idt---nq~~n~ 232 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDT---NQSSNY 232 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecc---cccccc
Confidence 000 01223344444444 67789999999999999997 888888773 555667
Q ss_pred EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEe
Q 022590 104 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 181 (294)
Q Consensus 104 ~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~ 181 (294)
..+.+| +++++++++..--+++|.+--.+... ......+..+.+|...|..++|+ ...+++.
T Consensus 233 ~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~---------------fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 233 DAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGT---------------FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ceeeCC-CCcEEEEecCCCCceEEEEEeccCcc---------------hhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 889999 99999999999999999875421110 01134577899999999999997 7799999
Q ss_pred eCCCeEEEecCCCCCCCCCCCCceeeeee----ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590 182 SVDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 257 (294)
Q Consensus 182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 257 (294)
+.||++++||..-....... ...+... .........+.++|+++ .|+.+ ....+++|..++++......
T Consensus 297 SkDG~wriwdtdVrY~~~qD--pk~Lk~g~~pl~aag~~p~RL~lsP~g~--~lA~s-~gs~l~~~~se~g~~~~~~e-- 369 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQD--PKILKEGSAPLHAAGSEPVRLELSPSGD--SLAVS-FGSDLKVFASEDGKDYPELE-- 369 (420)
T ss_pred ecCCcEEEeeccceEecCCC--chHhhcCCcchhhcCCCceEEEeCCCCc--EEEee-cCCceEEEEcccCccchhHH--
Confidence 99999999998754321111 1112222 11223344799999994 55544 45679999999876433332
Q ss_pred ccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 258 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 258 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
..|...|.+++|+++|+++++++ |..+++..
T Consensus 370 -~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 370 -DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 26778999999999999999996 66777765
No 112
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2.3e-30 Score=201.57 Aligned_cols=233 Identities=20% Similarity=0.337 Sum_probs=204.2
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
.|...|.++..- ..++ .+++|+.|..+-+|.......+..+.+|..+|.++.|++ ...+|++|+.+|+|++||++.
T Consensus 26 ~hsaav~~lk~~--~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 26 AHSAAVGCLKIR--KSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhceeeee--ccce-eeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhh
Confidence 567788888874 5666 899999999999999988777888999999999999999 888999999999999999999
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
++.++.+. +|...+..+.|+| -+.+++.|+.|+.+++||++. ..+...+.+|.
T Consensus 102 Ak~vrtLt---gh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk-----------------------~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 102 AKIVRTLT---GHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK-----------------------KGCSHTYKSHT 154 (825)
T ss_pred hhhhhhhh---ccccCcceeeecc-ceEEeccccccccceehhhhc-----------------------cCceeeecCCc
Confidence 99888887 7999999999999 888899999999999999997 55677788899
Q ss_pred Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590 166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 243 (294)
Q Consensus 166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~ 243 (294)
..+.++.|+ |.+++.++.|..+++||...++ ....++.|++.+..+.|+|.. .+++.|+.|+.+++|
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---------~~~ef~~~e~~v~sle~hp~e--~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---------LSKEFKSHEGKVQSLEFHPLE--VLLAPGSSDRTVRFW 223 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccccc---------cccccccccccccccccCchh--hhhccCCCCceeeee
Confidence 999999997 8899999999999999998776 678888899999999999988 688999999999999
Q ss_pred eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590 244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284 (294)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 284 (294)
|+++-+ .+.... .....|.+.+|+|+++.+++|..+.
T Consensus 224 dletfe--~I~s~~--~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 224 DLETFE--VISSGK--PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccceeE--EeeccC--CccCCceeeeecCCceeeecCchhh
Confidence 999764 222222 3356799999999999999886654
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-28 Score=186.71 Aligned_cols=232 Identities=16% Similarity=0.200 Sum_probs=190.7
Q ss_pred EEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEe
Q 022590 13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 92 (294)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 92 (294)
-++|+ ..+ .||+|.. ..|++|+..+++.......+...|+++.|++ ++.+|+.|..+|.|.|||..+.+.+..+
T Consensus 182 lldWs--s~n--~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 182 LLDWS--SAN--VLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred Hhhcc--cCC--eEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccc
Confidence 35676 333 5777654 4899999999987666666689999999999 9999999999999999999998888888
Q ss_pred eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecc
Q 022590 93 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 172 (294)
Q Consensus 93 ~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 172 (294)
.. .|...|-+++|. ...+.+|+.|+.|..+|++..... ...+.+|...|..+.
T Consensus 256 ~~--~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~----------------------~~~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 256 RG--SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV----------------------VSTLQGHRQEVCGLK 308 (484)
T ss_pred cC--CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh----------------------hhhhhcccceeeeeE
Confidence 72 299999999996 577999999999999999983211 113788999999999
Q ss_pred ee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE--cCCCeEEEEeccCC
Q 022590 173 WL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG--NREGKIFVWELQSS 248 (294)
Q Consensus 173 ~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~ 248 (294)
|+ +.++++|+.|+.+.|||....+ +...+..|...|.+++|+|-.. .+||+| +.|++|++||..++
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~~~---------p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLSPE---------PKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCCcc---------ccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCC
Confidence 97 8999999999999999995443 6778888999999999999887 588885 47999999999988
Q ss_pred CceeeeeccccccCCCeEEEEEccCCCEEEE--eccCCcEEEEecC
Q 022590 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILS--CCEDGAIWRWDAI 292 (294)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~vw~~~ 292 (294)
+. +..+ .....|.+|.|++..+-|++ |..++.|.||++.
T Consensus 379 ~~--i~~v---dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 379 AR--IDSV---DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred cE--eccc---ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 63 2222 34478999999998866665 4567789999974
No 114
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.4e-28 Score=171.02 Aligned_cols=243 Identities=15% Similarity=0.221 Sum_probs=185.0
Q ss_pred eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590 11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL 90 (294)
Q Consensus 11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 90 (294)
-.|+.|+ +.|. +||+|+.||.|.|||+.|...-+.+.+|..+|++++|++ ++++|++++.|..|.+||+..|.+++
T Consensus 26 a~~~~Fs--~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFS--RWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEec--cCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCcee
Confidence 3455555 9998 999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC-cee
Q 022590 91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVD 169 (294)
Q Consensus 91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~ 169 (294)
.+. ..++|+...|+|.+.+..++.-.+..-.+-++.......... . -.+..+ .-.
T Consensus 102 rir----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~-------------------d-~d~dln~sas 157 (405)
T KOG1273|consen 102 RIR----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK-------------------D-DDGDLNSSAS 157 (405)
T ss_pred EEE----ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC-------------------C-Cccccccccc
Confidence 998 889999999999777777777666666666666421110000 0 000000 111
Q ss_pred eccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC-CCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590 170 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 246 (294)
Q Consensus 170 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 246 (294)
+..|+ |+++++|...|.+.++|..+.+ ++..+.... ..|..+.++..+ .+|+.-+.|..||.|+++
T Consensus 158 ~~~fdr~g~yIitGtsKGkllv~~a~t~e---------~vas~rits~~~IK~I~~s~~g--~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 158 HGVFDRRGKYIITGTSKGKLLVYDAETLE---------CVASFRITSVQAIKQIIVSRKG--RFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cccccCCCCEEEEecCcceEEEEecchhe---------eeeeeeechheeeeEEEEeccC--cEEEEecCCceEEEEehh
Confidence 12343 9999999999999999999765 444554444 678889999988 689999999999999987
Q ss_pred C-------CCceeeeeccccccCCCeEEEEEccCCCEEEEecc-CCcEEEEecC
Q 022590 247 S-------SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAI 292 (294)
Q Consensus 247 ~-------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~ 292 (294)
. +++....++...-.+.+-.+++|+.+|.|+..++. ...++||.-.
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 3 12222233332234456788999999999988764 3469999864
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.2e-28 Score=179.99 Aligned_cols=230 Identities=18% Similarity=0.238 Sum_probs=184.4
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC---
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ--- 84 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~--- 84 (294)
.++|.+++-+ |+|. +|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+. |+.+|++|+.||.|.+|.+.
T Consensus 81 Pg~v~al~s~--n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 81 PGPVHALASS--NLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccceeeeecC--CCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeec
Confidence 4778899887 8997 888888999999999999999999999999999999999 99999999999999999864
Q ss_pred ------CCceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 85 ------TGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 85 ------~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
+-++.+.|. .|.-+|+++...+. -..+++|++.|.++++||+..+.
T Consensus 157 ~a~~~~~~~p~~~f~---~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~------------------------ 209 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFS---DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV------------------------ 209 (476)
T ss_pred ccccCCCccceeeec---cCcceeEEEEecCCCccceEEEecCCceEEEEEeccce------------------------
Confidence 224455555 79999999998872 24679999999999999999842
Q ss_pred eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCC-------CCCCCCceeeeeeecCCC--CeeEEEEcccC
Q 022590 158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ-------SPGEGTADILQKYPVPEC--DIWFIKFSCDF 226 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~ 226 (294)
+......+..+.++..+ +..+++|+.+|.|.+.++..... .........+..+.+|.. .|++++++-|+
T Consensus 210 LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg 289 (476)
T KOG0646|consen 210 LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG 289 (476)
T ss_pred eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence 22233356677777776 78999999999999988765431 111223445666777777 99999999999
Q ss_pred CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590 227 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 274 (294)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (294)
..|++|+.||.+++||+.+.+. ++.+. ...++|+.+.+.|-.
T Consensus 290 --tlLlSGd~dg~VcvWdi~S~Q~--iRtl~--~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 290 --TLLLSGDEDGKVCVWDIYSKQC--IRTLQ--TSKGPVTNLQINPLE 331 (476)
T ss_pred --cEEEeeCCCCCEEEEecchHHH--HHHHh--hhccccceeEeeccc
Confidence 6999999999999999998863 33333 245789999986643
No 116
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.2e-28 Score=199.96 Aligned_cols=230 Identities=20% Similarity=0.290 Sum_probs=182.3
Q ss_pred CCcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC------------------ccccceecccCcceEEEEeC
Q 022590 1 MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------------------EKLHKSFVGHGDSINEIRTQ 62 (294)
Q Consensus 1 ~~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------~~~~~~~~~h~~~v~~~~~~ 62 (294)
+|.++.|.+.|+|+.|+ |||+ +||+|+.|+.|.||+... .+.+..+.+|...|..++|+
T Consensus 62 l~~m~~h~~sv~CVR~S--~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFS--PDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred heeeccccCceeEEEEC--CCCC-eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 57889999999999998 9999 999999999999999873 13556788999999999999
Q ss_pred CCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccc--c-
Q 022590 63 PLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK--S- 139 (294)
Q Consensus 63 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~- 139 (294)
| ++.+|++++.|++|.+||..+.+.+..+. +|.+.|..+.|.| -+++|++-+.|++|++|++.+....... .
T Consensus 139 p-~~~~lvS~s~DnsViiwn~~tF~~~~vl~---~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 139 P-DDSLLVSVSLDNSVIIWNAKTFELLKVLR---GHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred C-CccEEEEecccceEEEEccccceeeeeee---cccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 9 99999999999999999999998888888 7999999999999 9999999999999999997763221111 1
Q ss_pred -----------eeecCCCCCCC---------------CceeeeceEEeecCCCceeeccee-------cc----------
Q 022590 140 -----------FTWTDLPSKFP---------------TKYVQFPVFIASVHSNYVDCNRWL-------GD---------- 176 (294)
Q Consensus 140 -----------~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~~~~-------~~---------- 176 (294)
..|.+...... .+........+.+|..++.++.|+ ..
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 11111110000 011112244678899999999996 11
Q ss_pred --eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590 177 --FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248 (294)
Q Consensus 177 --~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 248 (294)
.+|+|+.|+.|.||.....+. .+--.......|..++|+|+| ..|++++.||.|.++.++..
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RP--------l~vi~~lf~~SI~DmsWspdG--~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRP--------LFVIHNLFNKSIVDMSWSPDG--FSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCc--------hhhhhhhhcCceeeeeEcCCC--CeEEEEecCCeEEEEEcchH
Confidence 688999999999999865442 233334456789999999999 57889999999999998764
No 117
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.9e-27 Score=166.02 Aligned_cols=239 Identities=18% Similarity=0.262 Sum_probs=183.3
Q ss_pred ccCceeEEEEEeecCCCceEEEEeec--CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
-++-.+..++|. +++. .++.++. |.+|+..++.+.+.++-+.||...|++|+.+| .++.+++++.|++|++||+
T Consensus 54 skkyG~~~~~Ft-h~~~--~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDl 129 (311)
T KOG1446|consen 54 SKKYGVDLACFT-HHSN--TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDL 129 (311)
T ss_pred cccccccEEEEe-cCCc--eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEe
Confidence 344566777887 3333 3555554 88999999999999999999999999999999 7799999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee-
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS- 162 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 162 (294)
+..++...+. ...-...+|.| .|.++|++.....|++||+|.... .|...+.
T Consensus 130 R~~~cqg~l~-----~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dk---------------------gPF~tf~i 182 (311)
T KOG1446|consen 130 RVKKCQGLLN-----LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDK---------------------GPFTTFSI 182 (311)
T ss_pred cCCCCceEEe-----cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCC---------------------CCceeEcc
Confidence 9888877664 33345688999 999999998888999999998532 1222222
Q ss_pred --cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC---CCCeeEEEEcccCCcceEEEEc
Q 022590 163 --VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP---ECDIWFIKFSCDFHYNAAAIGN 235 (294)
Q Consensus 163 --~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~~~~ 235 (294)
......+.+.|+ |.+++.+...+.+++.|.-.+. .+..+..+ ..-.-...|+|++ .++++|+
T Consensus 183 ~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---------~~~tfs~~~~~~~~~~~a~ftPds--~Fvl~gs 251 (311)
T KOG1446|consen 183 TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---------VKSTFSGYPNAGNLPLSATFTPDS--KFVLSGS 251 (311)
T ss_pred CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---------EeeeEeeccCCCCcceeEEECCCC--cEEEEec
Confidence 335667788886 8999999999999999998776 33333333 2223567899999 5999999
Q ss_pred CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 236 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
.||+|.+|+++++..+....- .+.+++.++.|+|.-..++++ +..+-+|=.
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~---~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRG---PNGGPVSCVRFNPRYAMFVSA--SSNLVFWLP 302 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecC---CCCCCccccccCCceeeeeec--CceEEEEec
Confidence 999999999999874433332 267889999999987777766 445667743
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.6e-29 Score=182.31 Aligned_cols=209 Identities=18% Similarity=0.299 Sum_probs=174.8
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
.|.+.|.+++|+ ..-++.||+|+.|.+|++||+.++++..++..|.+.|.+++|+|..+..|++|+.|++|.+.|.+.
T Consensus 241 gHTdavl~Ls~n--~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 241 GHTDAVLALSWN--RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cchHHHHHHHhc--cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 688899999998 445559999999999999999999999999999999999999998899999999999999999984
Q ss_pred C-ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 86 G-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 86 ~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
. ..-..++ ..+.|-.++|.|.....++++..||+++-+|+|.. ..++..+..|
T Consensus 319 ~~~s~~~wk----~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~----------------------~~~vwt~~AH 372 (463)
T KOG0270|consen 319 PSNSGKEWK----FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP----------------------GKPVWTLKAH 372 (463)
T ss_pred ccccCceEE----eccceEEEEecCCCceeEEEecCCceEEeeecCCC----------------------CCceeEEEec
Confidence 3 2233344 66789999999988999999999999999999983 4688999999
Q ss_pred CCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 165 SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 165 ~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
.+.|.+++++ .+++++++.|+.+++|++...... ........-+...+.++.|+-. ..++.|+..+.++
T Consensus 373 d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-------~v~~~~~~~~rl~c~~~~~~~a-~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 373 DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-------SVKEHSFKLGRLHCFALDPDVA-FTLAFGGEKAVLR 444 (463)
T ss_pred cCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-------ccccccccccceeecccCCCcc-eEEEecCccceEE
Confidence 9999999997 789999999999999999765421 1111111223356677777765 4788899999999
Q ss_pred EEeccCCCc
Q 022590 242 VWELQSSPP 250 (294)
Q Consensus 242 i~d~~~~~~ 250 (294)
+||+.+..+
T Consensus 445 vwd~~~~~~ 453 (463)
T KOG0270|consen 445 VWDIFTNSP 453 (463)
T ss_pred EeecccChh
Confidence 999988753
No 119
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.4e-28 Score=166.54 Aligned_cols=200 Identities=20% Similarity=0.338 Sum_probs=164.7
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
+|+.-|.+++|+ .|.+ +|++|+.+..+||||++.. .+...+.+|.+.|..+-|.. ..+.+++.+.|++||+||.+
T Consensus 98 ~hkhivk~~af~--~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 98 EHKHIVKAVAFS--QDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred hhhheeeeEEec--ccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEec
Confidence 688889999997 7777 9999999999999999765 45678899999999999998 77888888999999999999
Q ss_pred CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
++..++.+. ...+|+++..++ ++.+|. -...+.|.+||...+...... .-
T Consensus 174 Tgt~v~sL~----~~s~VtSlEvs~-dG~ilT-ia~gssV~Fwdaksf~~lKs~------------------------k~ 223 (334)
T KOG0278|consen 174 TGTEVQSLE----FNSPVTSLEVSQ-DGRILT-IAYGSSVKFWDAKSFGLLKSY------------------------KM 223 (334)
T ss_pred cCcEEEEEe----cCCCCcceeecc-CCCEEE-EecCceeEEeccccccceeec------------------------cC
Confidence 999999997 788999999998 888554 455789999999984322111 11
Q ss_pred CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeee-eecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
+..|.+.+.+ ...+++|+.|..++.||..+++. +.. ..+|.++|.++.|+|+| ...++|++||+|+
T Consensus 224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE---------i~~~nkgh~gpVhcVrFSPdG--E~yAsGSEDGTir 292 (334)
T KOG0278|consen 224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE---------IGSYNKGHFGPVHCVRFSPDG--ELYASGSEDGTIR 292 (334)
T ss_pred ccccccccccCCCceEEecCcceEEEEEeccCCce---------eeecccCCCCceEEEEECCCC--ceeeccCCCceEE
Confidence 2223333332 67899999999999999999874 333 47888999999999999 6899999999999
Q ss_pred EEeccCCCc
Q 022590 242 VWELQSSPP 250 (294)
Q Consensus 242 i~d~~~~~~ 250 (294)
+|.....+.
T Consensus 293 lWQt~~~~~ 301 (334)
T KOG0278|consen 293 LWQTTPGKT 301 (334)
T ss_pred EEEecCCCc
Confidence 999987653
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.1e-28 Score=164.56 Aligned_cols=217 Identities=21% Similarity=0.268 Sum_probs=167.6
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCC-CceEEEeeCCCcE
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESV 78 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~i 78 (294)
..|+.|++||..++|.-..-|. +||+++.||.|.||.-++++ ....+..|...|++++|.|.+ +-.|++++.||.|
T Consensus 50 ~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v 128 (299)
T KOG1332|consen 50 AELTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV 128 (299)
T ss_pred eEecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence 3577999999999999433677 99999999999999988874 344567899999999999954 4578899999999
Q ss_pred EEEEcCCCceEEEeeccCCCCCceeEEEEecCC--C-----------ceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590 79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD--I-----------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 145 (294)
Q Consensus 79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~-----------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 145 (294)
.|.+.+....-..-+....|.-.|++++|.|.. + ..|++|+.|..|++|+.....
T Consensus 129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~------------ 196 (299)
T KOG1332|consen 129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS------------ 196 (299)
T ss_pred EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc------------
Confidence 999987652211112223799999999999931 2 569999999999999998731
Q ss_pred CCCCCCceeeeceEEeecCCCceeeccee------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590 146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 219 (294)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (294)
-.....+.+|.+.|+.++|. ..++++++.||++.||..+...... ...++. .....++.
T Consensus 197 ---------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w---k~tll~---~f~~~~w~ 261 (299)
T KOG1332|consen 197 ---------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW---KKTLLE---EFPDVVWR 261 (299)
T ss_pred ---------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc---cccccc---cCCcceEE
Confidence 11233478899999999996 3479999999999999887332211 111222 23567999
Q ss_pred EEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590 220 IKFSCDFHYNAAAIGNREGKIFVWELQSS 248 (294)
Q Consensus 220 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 248 (294)
+.||+.| ++|++++.|+.+.+|.-+..
T Consensus 262 vSWS~sG--n~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 262 VSWSLSG--NILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEeccc--cEEEEecCCcEEEEEEeCCC
Confidence 9999999 69999999999999986543
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.6e-28 Score=188.05 Aligned_cols=250 Identities=17% Similarity=0.236 Sum_probs=194.8
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC--CCceEEEeeCCCcEEEEEcC
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL--KPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~ 84 (294)
.+-.|.+++.+ |+|+ +||+|..-|+++||++.+.+....+.+|..+|.|+.|+.. ..++||+++.|..|.|+|+.
T Consensus 458 ~r~G~R~~~vS--p~gq-hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 458 SRFGFRALAVS--PDGQ-HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cccceEEEEEC--CCcc-eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 34567888887 9999 9999999999999999999999999999999999999863 35689999999999999997
Q ss_pred CCc-eEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 85 TGI-CILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 85 ~~~-~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
..- .+..+. +|...|+++.|.-.+ +..+++++.|..|.+--.+.... ....+.....
T Consensus 535 rny~l~qtld---~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~------------------g~~f~r~t~t 593 (1080)
T KOG1408|consen 535 RNYDLVQTLD---GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS------------------GRLFPRHTQT 593 (1080)
T ss_pred cccchhhhhc---ccccceeEEEEeecCCceEEEeccCchhhheehhccccC------------------ceeccccccc
Confidence 553 444555 799999999998733 26788999998776433222000 0011111122
Q ss_pred cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590 163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 240 (294)
Q Consensus 163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i 240 (294)
.....+..++.+ ..++++++.|+.|+|||+.++++ .+.+..-..+++....+...|.+ .|+++.+.|.++
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq------~k~FKgs~~~eG~lIKv~lDPSg--iY~atScsdktl 665 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ------VKSFKGSRDHEGDLIKVILDPSG--IYLATSCSDKTL 665 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccce------eeeecccccCCCceEEEEECCCc--cEEEEeecCCce
Confidence 223445555554 67999999999999999998873 22333334556677778888888 799999999999
Q ss_pred EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
.++|.-+++ ++.... +|...|+.+.|.+|-+.|++.+.||+|.||.+.
T Consensus 666 ~~~Df~sgE--cvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 666 CFVDFVSGE--CVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EEEEeccch--hhhhhc--CcchheeeeeecccchhheeecCCceEEEEECc
Confidence 999999997 444544 899999999999999999999999999999875
No 122
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.5e-28 Score=166.24 Aligned_cols=215 Identities=18% Similarity=0.241 Sum_probs=157.5
Q ss_pred ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590 47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126 (294)
Q Consensus 47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~ 126 (294)
+.+++|...|.+++|+. ++..|++|+.|+++++|+++..+...... ..+|.+.|-.++|+|..+.+|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~-~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELV-YRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhc-ccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 56678999999999999 99999999999999999998775444332 34799999999999988999999999999999
Q ss_pred EeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec-ceecceEEEeeCCCeEEEecCCCCCCCCC-----
Q 022590 127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN-RWLGDFILSKSVDNEIVLWEPKMKEQSPG----- 200 (294)
Q Consensus 127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----- 200 (294)
||++..+... ........+.-. ..+|+++++++.|..|.+.|.++.+....
T Consensus 92 wd~r~~k~~~-----------------------~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~ 148 (313)
T KOG1407|consen 92 WDIRSGKCTA-----------------------RIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF 148 (313)
T ss_pred EEeccCcEEE-----------------------EeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence 9999844322 222222222111 11244555555554444444443221100
Q ss_pred ---------------------------CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceee
Q 022590 201 ---------------------------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 253 (294)
Q Consensus 201 ---------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 253 (294)
....++++.++.|.....++.|+|+| +++|+|+.|..+.+||++..- +.
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G--ryfA~GsADAlvSLWD~~ELi--C~ 224 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG--RYFATGSADALVSLWDVDELI--CE 224 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC--ceEeeccccceeeccChhHhh--hh
Confidence 01233567777888888899999999 699999999999999998753 44
Q ss_pred eeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 254 ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 254 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
..+. .+.-||+.+.||.+|++||+||+|-.|-|=+++
T Consensus 225 R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 225 RCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred eeec--cccCceEEEEeccCcceeeccCccceEEeEecc
Confidence 4444 556789999999999999999999988665544
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.8e-27 Score=167.31 Aligned_cols=210 Identities=19% Similarity=0.290 Sum_probs=165.9
Q ss_pred ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc------------eEEEeeccCCCCCceeEEEEecCCCceEE
Q 022590 49 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI------------CILIFAGAGGHRNEVLSVDFHPSDIYRIA 116 (294)
Q Consensus 49 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 116 (294)
...|.+.|+++...+..++++++|+.||.|.+||+++.. ++...+...+|.-.|.++.|-|.+..+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 346889999999999999999999999999999997543 11111223478889999999999999999
Q ss_pred eeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce-----ecceEEEeeCCCeEEEec
Q 022590 117 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-----LGDFILSKSVDNEIVLWE 191 (294)
Q Consensus 117 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~l~~~~~d~~i~iwd 191 (294)
+++.|.+++|||.++.+... . ..-++.|.+-++ +.-++++|..+-.|++-|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~-----------------------~-F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAV-----------------------D-FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred cccccceEEEeecccceeeE-----------------------E-eecCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 99999999999999843211 1 112233333333 255788888999999999
Q ss_pred CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC------------ceeeeecccc
Q 022590 192 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP------------PVLIARLSHA 259 (294)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~ 259 (294)
+.++. ....+.+|...|.++.|+|... -.|++|+.||.|++||++... ..+..+ ...
T Consensus 175 i~SGs---------~sH~LsGHr~~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ 243 (397)
T KOG4283|consen 175 IASGS---------FSHTLSGHRDGVLAVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNT 243 (397)
T ss_pred ccCCc---------ceeeeccccCceEEEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-ccc
Confidence 99876 5788899999999999999987 588999999999999998641 111111 234
Q ss_pred ccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 260 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 260 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.|.+.|..++|+.++.++++++.|..+++|+...
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 6788999999999999999999999999999753
No 124
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=8.4e-28 Score=174.08 Aligned_cols=215 Identities=19% Similarity=0.356 Sum_probs=166.9
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc---cceecccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESV 78 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i 78 (294)
+.++.|...-++|+||+...|. |++|.--+.|++|...++.- ...+.+|+..|-.|+|+|.....|++|+.||+|
T Consensus 205 ~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 205 FTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred EEecccCccceeeecccccccc--cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceE
Confidence 4567899999999999766775 99999889999999988642 245677999999999999888999999999999
Q ss_pred EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
+|||++.+.....+.. +.|.+.|+.|.|+. ...+||+|+.||+++|||+|+.+. ..|+
T Consensus 283 rIWDiRs~~~~~~~~~-kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~--------------------~~pV 340 (440)
T KOG0302|consen 283 RIWDIRSGPKKAAVST-KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS--------------------GQPV 340 (440)
T ss_pred EEEEecCCCccceeEe-eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC--------------------CCcc
Confidence 9999998832222211 26999999999998 656999999999999999998432 4678
Q ss_pred EEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCC------C----CCCceeeeeeecCCCCeeEEEEccc
Q 022590 159 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSP------G----EGTADILQKYPVPECDIWFIKFSCD 225 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~------~----~~~~~~~~~~~~~~~~i~~~~~~~~ 225 (294)
..+..|..+|+++.|+ ...|++++.|.+|.+||+....... . .-+.+++.. ..-...+..+.|++.
T Consensus 341 A~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV-HqGQke~KevhWH~Q 419 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV-HQGQKEVKEVHWHRQ 419 (440)
T ss_pred eeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE-ecchhHhhhheeccC
Confidence 8999999999999998 6789999999999999997543210 0 011112222 222345677888887
Q ss_pred CCcceEEEEcCCCeEEEE
Q 022590 226 FHYNAAAIGNREGKIFVW 243 (294)
Q Consensus 226 ~~~~~l~~~~~dg~i~i~ 243 (294)
-. .++++.+.|| +.||
T Consensus 420 iP-G~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 420 IP-GLLVSTAIDG-FNVF 435 (440)
T ss_pred CC-CeEEEecccc-eeEE
Confidence 66 4778877787 4444
No 125
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.5e-28 Score=177.08 Aligned_cols=228 Identities=16% Similarity=0.225 Sum_probs=167.0
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 81 (294)
.+..|..+|.-+.|+ ||.+ +|++++.|..+.+||+.+|.....+. +|...+.+++|.| |+..+++|+.|+++..|
T Consensus 264 tlvgh~~~V~yi~wS--PDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWS--PDDR-YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMW 339 (519)
T ss_pred eeecccCceEEEEEC--CCCC-eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEe
Confidence 355899999999998 9998 88888888899999999999887775 3568899999999 99999999999999999
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccc----cc---ceeecCCCCCCC----
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV----EK---SFTWTDLPSKFP---- 150 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~---~~~~~~~~~~~~---- 150 (294)
|++ |..+...+. .....|.+++..+ ++..+++.+.|..|++++........ +. .+.........-
T Consensus 340 dlD-gn~~~~W~g--vr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 340 DLD-GNILGNWEG--VRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred cCC-cchhhcccc--cccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc
Confidence 995 444444442 1234688888888 77777777888888888876632220 00 011110000000
Q ss_pred C-------ceeeeceEEeecCCC--ceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCee
Q 022590 151 T-------KYVQFPVFIASVHSN--YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 218 (294)
Q Consensus 151 ~-------~~~~~~~~~~~~~~~--~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (294)
. ......+..+.+|.. .+-.-+|- ..++++|+.|+.|+||+..+++ ++..+.+|...++
T Consensus 416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---------ll~~LsGHs~~vN 486 (519)
T KOG0293|consen 416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---------LLAVLSGHSKTVN 486 (519)
T ss_pred cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---------eeEeecCCcceee
Confidence 0 000112223344443 23333443 4689999999999999999776 7899999999999
Q ss_pred EEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590 219 FIKFSCDFHYNAAAIGNREGKIFVWELQSS 248 (294)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 248 (294)
+++|+|... .++|+++.||+|+||-....
T Consensus 487 cVswNP~~p-~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 487 CVSWNPADP-EMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCCH-HHhhccCCCCeEEEecCCcc
Confidence 999999886 69999999999999987643
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=9.7e-27 Score=164.32 Aligned_cols=232 Identities=17% Similarity=0.289 Sum_probs=171.5
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
.|+.++.+++|. ++. .+++|+.||.|+.+|+.++... .+..|..+|.||.+++ ....+++|+.|++|++||.+.
T Consensus 52 ~~~~plL~c~F~--d~~--~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 52 KHGAPLLDCAFA--DES--TIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred ecCCceeeeecc--CCc--eEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccc
Confidence 789999999996 443 6999999999999999887764 4566999999999999 778999999999999999988
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
......+. ....|.++.. .++.|++|+.|..+.+||++......+. .-..-.
T Consensus 126 ~~~~~~~d----~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~---------------------reS~lk 177 (323)
T KOG1036|consen 126 KVVVGTFD----QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQR---------------------RESSLK 177 (323)
T ss_pred cccccccc----cCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhh---------------------ccccce
Confidence 66666655 4558999887 4567999999999999999985332211 001112
Q ss_pred Cceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC---------CCCeeEEEEcccCCcceEEEE
Q 022590 166 NYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP---------ECDIWFIKFSCDFHYNAAAIG 234 (294)
Q Consensus 166 ~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~l~~~ 234 (294)
-.+.|++. ++.-+++++-||+|.+=.+...+.... ....+..| --+|++++|+|-- ..|++|
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s-----kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~--~tfaTg 250 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS-----KKYAFKCHRLSEKDTEIIYPVNAIAFHPIH--GTFATG 250 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh-----hceeEEeeecccCCceEEEEeceeEecccc--ceEEec
Confidence 23444444 356788889999988765554421100 11111111 1378899999985 589999
Q ss_pred cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc
Q 022590 235 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE 282 (294)
Q Consensus 235 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 282 (294)
+.||.|.+||+.+.+. ...+. .-...|.+++|+.+|..||.++.
T Consensus 251 GsDG~V~~Wd~~~rKr--l~q~~--~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 251 GSDGIVNIWDLFNRKR--LKQLA--KYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCCceEEEccCcchhh--hhhcc--CCCCceEEEEeccCCCeEEEEec
Confidence 9999999999988753 22222 33467999999999999999863
No 127
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=2.2e-26 Score=182.29 Aligned_cols=274 Identities=19% Similarity=0.226 Sum_probs=195.4
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 86 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 86 (294)
.++|+.++|. .||.+++|+|+..|.+.+||++..+.+..+. .|.+.|....|.| +...+++++.|..+++|=.+++
T Consensus 244 ~g~VtslSFr--tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WGRVTSLSFR--TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred ccceeEEEec--cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCC
Confidence 5999999998 8999999999999999999999888777665 7989999999999 8889999999999999966644
Q ss_pred ce-EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc----------------------------------
Q 022590 87 IC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE---------------------------------- 131 (294)
Q Consensus 87 ~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~---------------------------------- 131 (294)
.- .+.+....||..|..+|.|.-..+..+.+++.|++++.+++..
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 32 1222223377777777777654566666666666555544322
Q ss_pred -------------------------------ccc--ccccce--------------------eecCCCCCC------CCc
Q 022590 132 -------------------------------FWT--YVEKSF--------------------TWTDLPSKF------PTK 152 (294)
Q Consensus 132 -------------------------------~~~--~~~~~~--------------------~~~~~~~~~------~~~ 152 (294)
... ...... .+.+..... ...
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 000 001000 000000000 000
Q ss_pred eeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCC------------------------------
Q 022590 153 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG------------------------------ 200 (294)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~------------------------------ 200 (294)
...........|..+|+.++.+ ++.+++++.+|-+++||+........
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV 560 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence 0011111235799999999998 77899999999999999987652110
Q ss_pred --CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEE
Q 022590 201 --EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278 (294)
Q Consensus 201 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 278 (294)
.......+.+.+|...|+.++|||+| ++|++++.|++|++||+.++..+-...+. .+.+++.|+|+|.+||
T Consensus 561 vD~~t~kvvR~f~gh~nritd~~FS~Dg--rWlisasmD~tIr~wDlpt~~lID~~~vd-----~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGHGNRITDMTFSPDG--RWLISASMDSTIRTWDLPTGTLIDGLLVD-----SPCTSLSFSPNGDFLA 633 (910)
T ss_pred EEchhhhhhHHhhccccceeeeEeCCCC--cEEEEeecCCcEEEEeccCcceeeeEecC-----CcceeeEECCCCCEEE
Confidence 00112345566789999999999999 69999999999999999999754444433 6789999999999999
Q ss_pred EeccC-CcEEEEec
Q 022590 279 SCCED-GAIWRWDA 291 (294)
Q Consensus 279 s~~~d-g~i~vw~~ 291 (294)
|...| .-|++|--
T Consensus 634 T~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 634 TVHVDQNGIYLWSN 647 (910)
T ss_pred EEEecCceEEEEEc
Confidence 99988 55999953
No 128
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.3e-26 Score=160.70 Aligned_cols=236 Identities=12% Similarity=0.192 Sum_probs=175.4
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCc--eEEEeeCCCcEEEEE
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKDESVRLWN 82 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i~vwd 82 (294)
..|+++|.+++|+ .||. .+++|+.|+.+++||+.+++ ...+..|.++|.++.|-+ ... .|++|+.|.+|+.||
T Consensus 69 ~~~~~PvL~v~Ws--ddgs-kVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 69 QSHDGPVLDVCWS--DDGS-KVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred hccCCCeEEEEEc--cCCc-eEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecc
Confidence 3689999999998 8897 99999999999999999995 467788999999999988 544 899999999999999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
++...++..+. -.+.++++..- ..+++++..++.|.+|+++......... ..|
T Consensus 144 ~R~~~pv~t~~----LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~---------------~Sp----- 196 (347)
T KOG0647|consen 144 TRSSNPVATLQ----LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRI---------------ESP----- 196 (347)
T ss_pred cCCCCeeeeee----ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhh---------------cCc-----
Confidence 99999998887 67788888773 4678899999999999998732111000 000
Q ss_pred cCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee---cCCCCeeEEEEcccCCcceEEEEcCC
Q 022590 163 VHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAIGNRE 237 (294)
Q Consensus 163 ~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~d 237 (294)
-.-.++|++. +.+..+.|+-+|++.+..+..+.. ......++-+... ..--.|++++|+|.- ..|++.+.|
T Consensus 197 -Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h--gtlvTaGsD 272 (347)
T KOG0647|consen 197 -LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH--GTLVTAGSD 272 (347)
T ss_pred -ccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeeccc--ceEEEecCC
Confidence 1122344433 256669999999999998887533 1111111111101 012357789999965 689999999
Q ss_pred CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590 238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 280 (294)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 280 (294)
|...+||-.....+. . ...|..+|++.+|+.+|.++|-+
T Consensus 273 Gtf~FWDkdar~kLk--~--s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 273 GTFSFWDKDARTKLK--T--SETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceEEEecchhhhhhh--c--cCcCCCccceeEecCCCCEEEEE
Confidence 999999987754222 2 23677899999999999988754
No 129
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-26 Score=163.65 Aligned_cols=227 Identities=17% Similarity=0.262 Sum_probs=175.3
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+-.|.+.|+++.|....... .|++|+.||.|.+|+....+++.++++|.+.|+.++.+| .+++-++.+.|+.++.||+
T Consensus 79 ll~HagsitaL~F~~~~S~s-hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 79 LLSHAGSITALKFYPPLSKS-HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred eeccccceEEEEecCCcchh-heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehh
Confidence 34789999999998433333 799999999999999999999999999999999999999 8899999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
-+|+.-.... -....+.+.|+| .+.+++.++.+ .|-+|.+..-. +.....
T Consensus 157 V~Gr~a~v~~----L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~------------------------v~~~i~ 206 (362)
T KOG0294|consen 157 VRGRVAFVLN----LKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNAS------------------------VFREIE 206 (362)
T ss_pred hcCccceeec----cCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHh------------------------Hhhhhh
Confidence 9988766655 333445599999 77778887765 68899888621 111111
Q ss_pred CCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 164 HSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 164 ~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
.+..+.++.|. +..+++|+.++.|++||..+.. +...+..|..+|..+.+-.+....+|++.+.||.|++
T Consensus 207 ~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~---------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 207 NPKRILCATFLDGSELLVGGDNEWISLKDTDSDT---------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred ccccceeeeecCCceEEEecCCceEEEeccCCCc---------cceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 23556677775 8899999999999999998644 6788889999999998766655579999999999999
Q ss_pred EeccCCCceeeeeccccccCCCeEEEEEc
Q 022590 243 WELQSSPPVLIARLSHAQSKSPIRQTAMS 271 (294)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 271 (294)
||++.........+........++|+...
T Consensus 278 Wd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 278 WDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred EEccccccCCcceeEEeecCCccceeeeh
Confidence 99987632222111111224566666654
No 130
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=8.8e-27 Score=172.71 Aligned_cols=254 Identities=12% Similarity=0.112 Sum_probs=191.7
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
+.+.++|++++|.+..+-+ ++|+|..-|+|-+||+.+. .-+..+..|..+|.+|.|+|.+...+++.+.||+|+.
T Consensus 183 kv~~~Rit~l~fHPt~~~~-lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRK-LVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred EecccceEEEEecccCcce-EEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 3678999999998654444 9999999999999999533 2345667899999999999998999999999999999
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
-|++.+..-..+.. ......+..+.|+. +...++.+..=|...+||++... .....
T Consensus 262 ~D~~~~i~e~v~s~-~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~----------------------s~~~~ 317 (498)
T KOG4328|consen 262 QDFEGNISEEVLSL-DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDG----------------------SEYEN 317 (498)
T ss_pred eeecchhhHHHhhc-CccceeeeeccccC-CCccEEEeecccceEEEEeecCC----------------------ccchh
Confidence 99987643322221 12445677888887 55556667666799999999842 22445
Q ss_pred eecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590 161 ASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 237 (294)
Q Consensus 161 ~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 237 (294)
+..|...|..++++ ..+|++++.|++.+|||+|....... ++-..-.|...|.+..|||.+. .|++.+.|
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~g--tl~TT~~D 390 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSGG--TLLTTCQD 390 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCCC--ceEeeccC
Confidence 66688899999997 77999999999999999997654221 2334445778899999999994 59999999
Q ss_pred CeEEEEecc----CCCceeeeeccccccC---CCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 238 GKIFVWELQ----SSPPVLIARLSHAQSK---SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 238 g~i~i~d~~----~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
..|+|||.. ...+. ..+.|.... -..-..+|.|+..++++|-.-..|-|+|-+
T Consensus 391 ~~IRv~dss~~sa~~~p~--~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 391 NEIRVFDSSCISAKDEPL--GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred CceEEeecccccccCCcc--ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 999999984 33322 223221111 234457899999999999888888888753
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=6.6e-27 Score=175.77 Aligned_cols=236 Identities=15% Similarity=0.290 Sum_probs=192.6
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc--cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
.+.-|.++... |||+ .|++|+.-.++.|||+....+ ...+....-...+++.+| |.++.+++..||.|.|||+.
T Consensus 464 rdnyiRSckL~--pdgr-tLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 464 RDNYIRSCKLL--PDGR-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred cccceeeeEec--CCCc-eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcc
Confidence 34556667776 9999 899999999999999976543 334444445678899999 89999999999999999999
Q ss_pred CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
+...++.|+ +|.+.+.||..++ ++..|-+|+.|+++|.||+++.....+.. .
T Consensus 540 nq~~Vrqfq---GhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd------------------------F 591 (705)
T KOG0639|consen 540 NQTLVRQFQ---GHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD------------------------F 591 (705)
T ss_pred cceeeeccc---CCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh------------------------h
Confidence 999999998 8999999999999 99999999999999999999955433222 2
Q ss_pred CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
...|.++.++ ++++++|-.++.+-+-.....+ ...+..|+..|.++.|++.| .++++.+.|+.+..
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~----------kyqlhlheScVLSlKFa~cG--kwfvStGkDnlLna 659 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE----------KYQLHLHESCVLSLKFAYCG--KWFVSTGKDNLLNA 659 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCCcc----------ceeecccccEEEEEEecccC--ceeeecCchhhhhh
Confidence 3445555554 8999999999999888776543 34556678889999999999 59999999999999
Q ss_pred EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
|...-+..++ .. ....+|.++.+|.|.+|++||+.|....||.+
T Consensus 660 wrtPyGasiF--qs---kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 660 WRTPYGASIF--QS---KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCcccccee--ec---cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9988775332 22 23378999999999999999999999999876
No 132
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-27 Score=195.67 Aligned_cols=248 Identities=14% Similarity=0.244 Sum_probs=197.6
Q ss_pred cCceeEEEEEeecCCCce---EEEEeecCCeEEEEEcCCc------cccceecccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590 7 KEESFYTVSWACNVDGIP---FLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES 77 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 77 (294)
-..+.+.++|. +.|.. +||.|..||.|.+||...- ..+.+...|++.|..+.|++..+++||+|+.||.
T Consensus 63 s~~rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 63 SSNRFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred ccccceeeeec--ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc
Confidence 34678899998 44442 5999999999999998652 3456778899999999999977889999999999
Q ss_pred EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
|.|||+...+....... ....+.|.+++|+....++|++++.+|.+.|||++. ..+
T Consensus 141 I~iWDlnn~~tP~~~~~-~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-----------------------~~p 196 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGS-QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-----------------------KKP 196 (1049)
T ss_pred EEEeccCCcCCCCCCCC-CCCcccceEeccchhhhHHhhccCCCCCceeccccC-----------------------CCc
Confidence 99999987655444421 125678999999987789999999999999999998 334
Q ss_pred eEEeecCCC--ceeeccee---cceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590 158 VFIASVHSN--YVDCNRWL---GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 229 (294)
Q Consensus 158 ~~~~~~~~~--~i~~~~~~---~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (294)
+..+..+.. .+..+.|+ ...+++++.|. .|.+||+|.... .++.+..|...|.++.|++.+. .
T Consensus 197 ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass--------P~k~~~~H~~GilslsWc~~D~-~ 267 (1049)
T KOG0307|consen 197 IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS--------PLKILEGHQRGILSLSWCPQDP-R 267 (1049)
T ss_pred ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC--------chhhhcccccceeeeccCCCCc-h
Confidence 444444443 46678887 34566666554 599999997543 6777789999999999999886 6
Q ss_pred eEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEeccCCcEEEEecCC
Q 022590 230 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~~ 293 (294)
++++++.|+.|.+|+.++++ .+..+. .....+..+.|+|... .++.++-||.|.|+.+..
T Consensus 268 lllSsgkD~~ii~wN~~tgE--vl~~~p--~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 268 LLLSSGKDNRIICWNPNTGE--VLGELP--AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hhhcccCCCCeeEecCCCce--EeeecC--CCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 89999999999999999986 445554 4557899999999766 788899999999998864
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=2.8e-25 Score=166.97 Aligned_cols=235 Identities=16% Similarity=0.308 Sum_probs=184.9
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
+.-|.|++|. ++|+ +++|.++|.|.||+..+.+..+....|.+.|.+++... ++. |++|+.|..|..||-. -+
T Consensus 246 kk~Vl~v~F~--engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~-y~ 318 (626)
T KOG2106|consen 246 KKFVLCVTFL--ENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR-DGT-LLSGGKDRKIILWDDN-YR 318 (626)
T ss_pred ceEEEEEEEc--CCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec-Ccc-EeecCccceEEecccc-cc
Confidence 3678888887 8897 99999999999999988887777779999999999988 665 5569999999999832 11
Q ss_pred eEEEeec--------------------------------------cCCCCCceeEEEEecCCCceEEeeecCCcEEEEec
Q 022590 88 CILIFAG--------------------------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 129 (294)
Q Consensus 88 ~~~~~~~--------------------------------------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~ 129 (294)
.++..+. ..+|......++.+| +.+++++++.|+.+++|+-
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~~ 397 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWND 397 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEccC
Confidence 1110000 016888999999999 7788999999999999992
Q ss_pred cccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeee
Q 022590 130 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ 208 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 208 (294)
.. +. -...-..+..|+.|+ ...++.|...|...+.|.++.. .+.
T Consensus 398 ~k-------------------------~~-wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~---------lv~ 442 (626)
T KOG2106|consen 398 HK-------------------------LE-WTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD---------LVT 442 (626)
T ss_pred Cc-------------------------ee-EEEEecCceeEeeccCcceEEEeeccceEEEEecccce---------eEE
Confidence 22 11 112234566777776 3399999999999999998643 333
Q ss_pred eeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEE
Q 022590 209 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 288 (294)
Q Consensus 209 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 288 (294)
.... ..++..++|+|+| .+||.|+.|+.|++|.+..+.......-. .+..+|+.+.||+|+++|.+-+.|-.|..
T Consensus 443 ~~~d-~~~ls~v~ysp~G--~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~eiLy 517 (626)
T KOG2106|consen 443 IHTD-NEQLSVVRYSPDG--AFLAVGSHDNHIYIYRVSANGRKYSRVGK--CSGSPITHLDWSSDSQFLVSNSGDYEILY 517 (626)
T ss_pred EEec-CCceEEEEEcCCC--CEEEEecCCCeEEEEEECCCCcEEEEeee--ecCceeEEeeecCCCceEEeccCceEEEE
Confidence 3333 7899999999999 69999999999999999887655544444 33489999999999999999999999999
Q ss_pred Ee
Q 022590 289 WD 290 (294)
Q Consensus 289 w~ 290 (294)
|.
T Consensus 518 W~ 519 (626)
T KOG2106|consen 518 WK 519 (626)
T ss_pred Ec
Confidence 94
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=172.21 Aligned_cols=226 Identities=20% Similarity=0.244 Sum_probs=170.4
Q ss_pred cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590 46 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK 125 (294)
Q Consensus 46 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~ 125 (294)
+..+.+|.+.|.+++=+|..-..+++|+.||.|++||+.+..+...+. .|.+.|..|++.. ..+++++.|.+|+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~---AH~G~V~Gi~v~~---~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK---AHEGLVRGICVTQ---TSFFTVGDDKTVK 132 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee---cccCceeeEEecc---cceEEecCCccee
Confidence 345689999999999999544789999999999999999999999998 7999999999974 5688999999999
Q ss_pred EEeccccccc-cc--------------cceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeE
Q 022590 126 IWSMKEFWTY-VE--------------KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEI 187 (294)
Q Consensus 126 ~wd~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i 187 (294)
.|.+...... .. ..+...+.....-......|+..+..-.+.|.++.|+ ...|++++.|+.|
T Consensus 133 ~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 133 QWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred eeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 9986652000 00 0000000000011112234566666677778888887 5688899999999
Q ss_pred EEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEE
Q 022590 188 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ 267 (294)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 267 (294)
.+||++.... +..... ...-+.++|+|.. ..++++++|..++.||++..+. ....+.+|.+.|.+
T Consensus 213 vLyD~R~~~P---------l~KVi~-~mRTN~IswnPea--fnF~~a~ED~nlY~~DmR~l~~---p~~v~~dhvsAV~d 277 (433)
T KOG0268|consen 213 VLYDLRQASP---------LKKVIL-TMRTNTICWNPEA--FNFVAANEDHNLYTYDMRNLSR---PLNVHKDHVSAVMD 277 (433)
T ss_pred EEEecccCCc---------cceeee-eccccceecCccc--cceeeccccccceehhhhhhcc---cchhhcccceeEEE
Confidence 9999998763 332222 2345679999965 5788999999999999988642 22224588899999
Q ss_pred EEEccCCCEEEEeccCCcEEEEecC
Q 022590 268 TAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 268 ~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
+.|||.|+-+++||.|.+|+||.++
T Consensus 278 VdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 278 VDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred eccCCCcchhccccccceEEEeecC
Confidence 9999999999999999999999875
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=172.36 Aligned_cols=251 Identities=18% Similarity=0.199 Sum_probs=193.1
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-ccceeccc-CcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 81 (294)
.+=...+|.++|++ .+.+ .||.+-.||.|.+|++..+= +...+.++ ...|.+++|++ +..|++.+.+|.|.-|
T Consensus 21 ~d~~Ps~I~slA~s--~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYS--HKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEW 95 (691)
T ss_pred EeeeccceEEEEEe--ccCC-ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEE
Confidence 34456789999998 5565 79999999999999998753 23344544 45799999996 4578899999999999
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
|+.+++....+. ...+.|++++.+| .+..++.|+.||.+..++....... ....+
T Consensus 96 Dl~~lk~~~~~d---~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~---------------------~~r~l 150 (691)
T KOG2048|consen 96 DLHTLKQKYNID---SNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKIT---------------------YKRSL 150 (691)
T ss_pred ecccCceeEEec---CCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEE---------------------EEeec
Confidence 999999999888 5788999999999 8888999999997777777653211 12233
Q ss_pred ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEcccCCcceEEEEcCCC
Q 022590 162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREG 238 (294)
Q Consensus 162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg 238 (294)
....+.|.+++|+ +..++.|+.||.|++||..++...... .. .+..+.. ...-|+++.|-.++ .+++|+.-|
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~-~~-~~d~l~k~~~~iVWSv~~Lrd~---tI~sgDS~G 225 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII-TM-QLDRLSKREPTIVWSVLFLRDS---TIASGDSAG 225 (691)
T ss_pred ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe-ee-cccccccCCceEEEEEEEeecC---cEEEecCCc
Confidence 4446889999998 567899999999999999987642200 00 0111111 33457788887665 799999999
Q ss_pred eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.|.+||...+.. .... ..|...|.+++..+++.++++++.|+.|.-+...+
T Consensus 226 ~V~FWd~~~gTL--iqS~--~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 226 TVTFWDSIFGTL--IQSH--SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred eEEEEcccCcch--hhhh--hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence 999999998863 2333 37778899999999999999999999988876543
No 136
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=4.4e-25 Score=174.96 Aligned_cols=278 Identities=13% Similarity=0.171 Sum_probs=201.7
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 81 (294)
+.+..+...|+++.=+ |-=. .+|.|..+|+|.++|+..++.+.+++...++|+.++|..++..++++|+..|.+.+|
T Consensus 196 ~~f~~~~s~IT~ieqs--PaLD-VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 196 YTFQEFFSRITAIEQS--PALD-VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW 272 (910)
T ss_pred EEecccccceeEeccC--Ccce-EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence 4456777899999877 6555 899999999999999999999999995569999999998666788899999999999
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccc------------ceeecC-----
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK------------SFTWTD----- 144 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~------------~~~~~~----- 144 (294)
|++..+.+..... .|.+.|....|.| +...+++++.|+.+++|=..++...... .+.+-+
T Consensus 273 DLe~kkl~~v~~n--ah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 273 DLEKKKLINVTRN--AHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred EcCCCeeeeeeec--cccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 9998888777765 6889999999999 9999999999999998866632110000 000000
Q ss_pred -------------------------C---------CCCC-CCceeeece-------------------------------
Q 022590 145 -------------------------L---------PSKF-PTKYVQFPV------------------------------- 158 (294)
Q Consensus 145 -------------------------~---------~~~~-~~~~~~~~~------------------------------- 158 (294)
. .... .......++
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 0 0000 000000000
Q ss_pred -------EEee-----cCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590 159 -------FIAS-----VHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 224 (294)
Q Consensus 159 -------~~~~-----~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 224 (294)
..+. .....+++++. +|++.+.|+..|.|-+|+++++-.. .....-+.|..+|+.++...
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r------~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR------KSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee------cccccCccccCceeEEEecC
Confidence 0000 01134444444 4999999999999999999987521 12223357888999998877
Q ss_pred cCCcceEEEEcCCCeEEEEeccCCCceeee-------------------------------------eccccccCCCeEE
Q 022590 225 DFHYNAAAIGNREGKIFVWELQSSPPVLIA-------------------------------------RLSHAQSKSPIRQ 267 (294)
Q Consensus 225 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------~~~~~~~~~~v~~ 267 (294)
-+ ..+++++.+|.+++||.++....... .-...+|...|++
T Consensus 504 ~n--~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 504 TN--RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred CC--ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 66 68999999999999998765411000 0012368899999
Q ss_pred EEEccCCCEEEEeccCCcEEEEecCC
Q 022590 268 TAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 268 ~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
++|||||++|++++.|++|++||+-+
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccC
Confidence 99999999999999999999999854
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.4e-28 Score=188.52 Aligned_cols=220 Identities=20% Similarity=0.355 Sum_probs=189.3
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 104 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 104 (294)
+++.+...-.+++|+.. .+-.|...|.++..-. ..+.+++|+.|..+-+|.+.....+..+. +|..+|.+
T Consensus 6 ~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~---~hespIeS 75 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLT---GHESPIES 75 (825)
T ss_pred ccceeeeeeccccccch------hhhhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhheee---ccCCccee
Confidence 45555566677788753 3445888888888855 77899999999999999998777777666 79999999
Q ss_pred EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee
Q 022590 105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 182 (294)
Q Consensus 105 l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 182 (294)
+.|++ ...+|++|+.+|+|++||+.. ...+..+.+|...+..+.|+ +.+++.++
T Consensus 76 l~f~~-~E~LlaagsasgtiK~wDlee-----------------------Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gS 131 (825)
T KOG0267|consen 76 LTFDT-SERLLAAGSASGTIKVWDLEE-----------------------AKIVRTLTGHLLNITSVDFHPYGEFFASGS 131 (825)
T ss_pred eecCc-chhhhcccccCCceeeeehhh-----------------------hhhhhhhhccccCcceeeeccceEEecccc
Confidence 99999 889999999999999999998 45567889999999999998 88999999
Q ss_pred CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccC
Q 022590 183 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK 262 (294)
Q Consensus 183 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 262 (294)
.|+.+++||.+... +...+..|...+..+.|+|+| .+++.|++|..+++||+..++ ....+. .|.
T Consensus 132 tdtd~~iwD~Rk~G---------c~~~~~s~~~vv~~l~lsP~G--r~v~~g~ed~tvki~d~~agk--~~~ef~--~~e 196 (825)
T KOG0267|consen 132 TDTDLKIWDIRKKG---------CSHTYKSHTRVVDVLRLSPDG--RWVASGGEDNTVKIWDLTAGK--LSKEFK--SHE 196 (825)
T ss_pred ccccceehhhhccC---------ceeeecCCcceeEEEeecCCC--ceeeccCCcceeeeecccccc--cccccc--ccc
Confidence 99999999999443 677778888889999999999 699999999999999999886 444444 788
Q ss_pred CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 263 SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 263 ~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+.+.++.|+|..-++++|+.|+++++||+++
T Consensus 197 ~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 197 GKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred ccccccccCchhhhhccCCCCceeeeeccce
Confidence 8999999999999999999999999999973
No 138
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.9e-25 Score=174.79 Aligned_cols=244 Identities=14% Similarity=0.202 Sum_probs=183.9
Q ss_pred EEEEeecCCCceEEEEeecCCeEEEEEcCCcccc---ceecccCcceEEEEeCCC----------CCceEEEeeCCCcEE
Q 022590 13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH---KSFVGHGDSINEIRTQPL----------KPSLVVSASKDESVR 79 (294)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~h~~~v~~~~~~~~----------~~~~l~s~~~dg~i~ 79 (294)
+++..|++... .|.+.-.|..++|||+.+-+.+ ..+--|...|+.+.--|- -...+++++.|++||
T Consensus 327 ~IA~~Fdet~~-klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDETTD-KLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCCCc-eEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 56667778887 8999999999999999875433 233348888877765551 124689999999999
Q ss_pred EEEcCCCceEEEee----------c------------------------cCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590 80 LWNVQTGICILIFA----------G------------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVK 125 (294)
Q Consensus 80 vwd~~~~~~~~~~~----------~------------------------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~ 125 (294)
+||+..+..-..+. . ..+....+.+++.+| ++++|++|..-|+++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLR 484 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceE
Confidence 99997521111100 0 003445689999999 999999999999999
Q ss_pred EEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-----cceEEEeeCCCeEEEecCCCCCCCCC
Q 022590 126 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPG 200 (294)
Q Consensus 126 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~ 200 (294)
+|++.. .........|+..|.|+.|+ ..+|++++.|+-|++||....-.
T Consensus 485 Vy~Lq~-----------------------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~--- 538 (1080)
T KOG1408|consen 485 VYDLQE-----------------------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD--- 538 (1080)
T ss_pred EEEehh-----------------------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc---
Confidence 999998 34456778899999999997 46899999999999999976432
Q ss_pred CCCceeeeeeecCCCC-------------------------------------------------eeEEEEcccCCcceE
Q 022590 201 EGTADILQKYPVPECD-------------------------------------------------IWFIKFSCDFHYNAA 231 (294)
Q Consensus 201 ~~~~~~~~~~~~~~~~-------------------------------------------------i~~~~~~~~~~~~~l 231 (294)
+++.+..|... ++.++..|.. .++
T Consensus 539 -----l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~--k~v 611 (1080)
T KOG1408|consen 539 -----LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS--KLV 611 (1080)
T ss_pred -----hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc--ceE
Confidence 23333333333 4444555554 589
Q ss_pred EEEcCCCeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 232 AIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
++++.|..|+||++++++. ...++ ...|.+....+...|.|-|||+.+.|.++.++|+.+
T Consensus 612 ~t~cQDrnirif~i~sgKq--~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDIESGKQ--VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred EEEecccceEEEeccccce--eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence 9999999999999999974 44444 336667888899999999999999999999999854
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=170.95 Aligned_cols=221 Identities=16% Similarity=0.231 Sum_probs=169.8
Q ss_pred EcCCccccceecccCcceEEEEeCCCCC-ceEEEeeCCCcEEEEEcCCC----ceEEEeeccCCCCCceeEEEEecCCCc
Q 022590 39 DVSNEKLHKSFVGHGDSINEIRTQPLKP-SLVVSASKDESVRLWNVQTG----ICILIFAGAGGHRNEVLSVDFHPSDIY 113 (294)
Q Consensus 39 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~ 113 (294)
|+.+-......+-+.++|++++|+|... +++++|..-|+|-+||+.+. ..+..+. .|..+|.+|.|+|.+..
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~---~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT---PHSGPVSGLKFSPANTS 248 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec---cCCccccceEecCCChh
Confidence 3333344455667889999999999766 68899999999999999532 2334444 69999999999998889
Q ss_pred eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEec
Q 022590 114 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE 191 (294)
Q Consensus 114 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd 191 (294)
.+++.+.||+|++-|+...... .+.........+..+.|+ ...++.+..=|...+||
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e---------------------~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD 307 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISE---------------------EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID 307 (498)
T ss_pred heeeeccCceeeeeeecchhhH---------------------HHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence 9999999999999999873211 122222334455666665 45566666667999999
Q ss_pred CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEc
Q 022590 192 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 271 (294)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 271 (294)
+++... ....+..|...|..+++.|-.. .+|++++.|++.+|||++.........+....|...|.+..||
T Consensus 308 ~R~~~s--------~~~~~~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 308 LRTDGS--------EYENLRLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred eecCCc--------cchhhhhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 998763 3555666777899999999886 6899999999999999987654332123334788999999999
Q ss_pred cCCCEEEEeccCCcEEEEecC
Q 022590 272 YDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 272 ~~~~~l~s~~~dg~i~vw~~~ 292 (294)
|.+-.|+|.+.|..|+|||..
T Consensus 379 Ps~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 379 PSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCCceEeeccCCceEEeecc
Confidence 998889999999999999973
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=4.6e-24 Score=163.59 Aligned_cols=236 Identities=13% Similarity=0.113 Sum_probs=163.0
Q ss_pred eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCcEEEEEcCCCce
Q 022590 10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGIC 88 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~ 88 (294)
.+.+++|+ |+|+.++++++.++.|++||..+++....+..+.. +..++|+| +++.+ ++++.|+.|++||+.+++.
T Consensus 32 ~~~~l~~~--~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 32 RPRGITLS--KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHP-NGKILYIANEDDNLVTVIDIETRKV 107 (300)
T ss_pred CCCceEEC--CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeE
Confidence 35677886 88883346778899999999999888777765543 57789999 66655 4556789999999998887
Q ss_pred EEEeeccCCCCCceeEEEEecCCCceEEeeecCC-cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590 89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 167 (294)
Q Consensus 89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (294)
+..+. +...+.+++|+| ++.+++++..++ .+.+||.++... ..... ....
T Consensus 108 ~~~~~----~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~-----------------------~~~~~-~~~~ 158 (300)
T TIGR03866 108 LAEIP----VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEI-----------------------VDNVL-VDQR 158 (300)
T ss_pred EeEee----CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeE-----------------------EEEEE-cCCC
Confidence 77665 344578899999 888888887765 467778876321 11111 1122
Q ss_pred eeeccee--cceEE-EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC-------CCCeeEEEEcccCCcceEEEEcCC
Q 022590 168 VDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-------ECDIWFIKFSCDFHYNAAAIGNRE 237 (294)
Q Consensus 168 i~~~~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~l~~~~~d 237 (294)
...+.|+ +.+++ ++..++.|++||+++++. +..+..+ ......++|+|+++ ..+++...+
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~s~dg~-~~~~~~~~~ 228 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------IKKITFEIPGVHPEAVQPVGIKLTKDGK-TAFVALGPA 228 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------eeeeeecccccccccCCccceEECCCCC-EEEEEcCCC
Confidence 3455564 66665 445699999999987652 2221111 11234688999995 223444556
Q ss_pred CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe-ccCCcEEEEecCC
Q 022590 238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRWDAIP 293 (294)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vw~~~~ 293 (294)
+.+.+||+++.+... ... +...+.+++|+|+|++|+++ +.+|.|++||+++
T Consensus 229 ~~i~v~d~~~~~~~~--~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 229 NRVAVVDAKTYEVLD--YLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CeEEEEECCCCcEEE--EEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 789999998775332 221 22468899999999999886 5689999999875
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-24 Score=169.05 Aligned_cols=249 Identities=16% Similarity=0.242 Sum_probs=198.3
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
..++.|.+++|+ +.+ .|++.+.+|.|.-||+.++++...+....++|++++.+| .+..++.|+.||.+...+...
T Consensus 67 ~~drsIE~L~W~--e~~--RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p 141 (691)
T KOG2048|consen 67 PEDRSIESLAWA--EGG--RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGP 141 (691)
T ss_pred CCCCceeeEEEc--cCC--eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCC
Confidence 456799999998 555 599999999999999999999999999999999999999 888999999999777777766
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec-C
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-H 164 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 164 (294)
++...... +...++.|.+++|+| ++..+++|+.||.|++||...+....... ..+..+.. .
T Consensus 142 ~~I~~~r~-l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~----------------~~~d~l~k~~ 203 (691)
T KOG2048|consen 142 DKITYKRS-LMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIIT----------------MQLDRLSKRE 203 (691)
T ss_pred ceEEEEee-cccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEee----------------ecccccccCC
Confidence 66544332 224568999999999 88889999999999999999843322100 00111111 2
Q ss_pred CCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590 165 SNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 243 (294)
Q Consensus 165 ~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~ 243 (294)
+.-|.++.|- ...+++|...|+|.+||...+. +++.+..|...|.+++..+++ +++++++.|+.|..|
T Consensus 204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT---------LiqS~~~h~adVl~Lav~~~~--d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT---------LIQSHSCHDADVLALAVADNE--DRVFSAGVDPKIIQY 272 (691)
T ss_pred ceEEEEEEEeecCcEEEecCCceEEEEcccCcc---------hhhhhhhhhcceeEEEEcCCC--CeEEEccCCCceEEE
Confidence 2334455553 7899999999999999998665 677788889999999999998 589999999999999
Q ss_pred eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
...+.+...+.......|...|.+++..++ .|++|+.|..+.+-.
T Consensus 273 ~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 273 SLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred EecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 988876545555555678889999999887 899999999887643
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=8e-26 Score=170.03 Aligned_cols=239 Identities=16% Similarity=0.267 Sum_probs=191.8
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---cccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
.|.+-|.++..+ ...+ ++++|+. |.|+|||+... .++..+. ....-|.++.+.| +++.|++|+.-.++.|
T Consensus 417 ~HGEvVcAvtIS--~~tr-hVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTIS--NPTR-HVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEec--CCcc-eeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeee
Confidence 688888888887 5555 7888875 68999998643 2333332 2356789999999 8999999999999999
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
||+........... ....-..++++.+| +.++.+++..||.|.|||+.. +..+..
T Consensus 492 WDLAapTprikael-tssapaCyALa~sp-DakvcFsccsdGnI~vwDLhn-----------------------q~~Vrq 546 (705)
T KOG0639|consen 492 WDLAAPTPRIKAEL-TSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHN-----------------------QTLVRQ 546 (705)
T ss_pred eeccCCCcchhhhc-CCcchhhhhhhcCC-ccceeeeeccCCcEEEEEccc-----------------------ceeeec
Confidence 99976554322221 02334678899999 889999999999999999998 677889
Q ss_pred eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590 161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 238 (294)
Q Consensus 161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 238 (294)
+.+|.+.+.|+..+ |..|-+|+-|.++|-||++.+.+ +..... ...|.++..+|.+ .++++|-+++
T Consensus 547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq---------lqqhdF-~SQIfSLg~cP~~--dWlavGMens 614 (705)
T KOG0639|consen 547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ---------LQQHDF-SSQIFSLGYCPTG--DWLAVGMENS 614 (705)
T ss_pred ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh---------hhhhhh-hhhheecccCCCc--cceeeecccC
Confidence 99999999999997 99999999999999999998763 222221 3568889999998 6999999999
Q ss_pred eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
.+.+......+. ..+. .|...|.++.|.+.|+++++.+.|+.+..|..
T Consensus 615 ~vevlh~skp~k---yqlh--lheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 615 NVEVLHTSKPEK---YQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred cEEEEecCCccc---eeec--ccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 999988877642 2222 67789999999999999999999999999975
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.7e-25 Score=170.27 Aligned_cols=265 Identities=16% Similarity=0.191 Sum_probs=183.1
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
..|++.|.+|+.. |.|. +|++|+.||+|+||.+.++.+++++. ..+.|.|++|+|.....++++..+..+.|-+..
T Consensus 397 rGHtg~Vr~iSvd--p~G~-wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 397 RGHTGLVRSISVD--PSGE-WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eccCCeEEEEEec--CCcc-eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 5899999999987 7898 99999999999999999999999887 467999999999544444444444445554432
Q ss_pred CCce-------------------------------------EEEeeccCCCCCceeEEEEecCCCceEEeeecC---CcE
Q 022590 85 TGIC-------------------------------------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTV 124 (294)
Q Consensus 85 ~~~~-------------------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d---g~i 124 (294)
-|.. +.... .|...|..+.|+. .|.+|++...+ ..|
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I---~~~k~i~~vtWHr-kGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI---KHPKSIRQVTWHR-KGDYLATVMPDSGNKSV 548 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE---ecCCccceeeeec-CCceEEEeccCCCcceE
Confidence 2200 01111 3788899999998 89999988654 468
Q ss_pred EEEecccccccccc--------ceeecCCCCCC-CCcee---------eeceEEeecCCCceeeccee--cceEEEeeCC
Q 022590 125 KIWSMKEFWTYVEK--------SFTWTDLPSKF-PTKYV---------QFPVFIASVHSNYVDCNRWL--GDFILSKSVD 184 (294)
Q Consensus 125 ~~wd~~~~~~~~~~--------~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d 184 (294)
.|.++.......-. ...+.+....+ ..... +..+..+......|..++.+ |+.|+.++.|
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 88888763321110 01111100000 00000 00001111223445555555 7999999999
Q ss_pred CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc-------CCCceeeeecc
Q 022590 185 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-------SSPPVLIARLS 257 (294)
Q Consensus 185 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~ 257 (294)
+.+..||+..... +.+.+..|...++.++|++.- .++++|+.||.+.||.-. +.-.+.+..+.
T Consensus 629 ~k~~WfDldlssk--------Pyk~lr~H~~avr~Va~H~ry--PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 629 KKMCWFDLDLSSK--------PYKTLRLHEKAVRSVAFHKRY--PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred CeeEEEEcccCcc--------hhHHhhhhhhhhhhhhhcccc--ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 9999999986543 667778889999999999887 699999999999998532 22223344444
Q ss_pred ccccCC----CeEEEEEccCCCEEEEeccCCcEEEE
Q 022590 258 HAQSKS----PIRQTAMSYDGSTILSCCEDGAIWRW 289 (294)
Q Consensus 258 ~~~~~~----~v~~~~~s~~~~~l~s~~~dg~i~vw 289 (294)
+|.. .|..+.|+|...+|++++.||.|++|
T Consensus 699 --gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 699 --GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred --CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 5544 48999999999999999999999998
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.2e-23 Score=158.22 Aligned_cols=257 Identities=15% Similarity=0.177 Sum_probs=189.3
Q ss_pred ccCceeEEEEEeecCCCceEEEEe--ecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAG--GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
.-+..|.|++|+....|. +++.- +.+..+.+||...+......+.-++.|....|+|.+.+++++++. |.+.+|+.
T Consensus 152 ~f~~GV~~vaFsk~~~G~-~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~ 229 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGS-LLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTL 229 (626)
T ss_pred cccccceeeeecccCCCc-eEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEc
Confidence 345789999999877777 55554 455678999999888888888888899999999988888888887 89999999
Q ss_pred CCCceEEEeeccCCCC-CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 84 QTGICILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
+.+...+....++.+. ..|.|++|.+ ++. +++|..+|.|.+|+.... .......
T Consensus 230 ~~~~l~k~~~~fek~ekk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~-----------------------~~~k~~~ 284 (626)
T KOG2106|consen 230 RGGSLVKRQGIFEKREKKFVLCVTFLE-NGD-VITGDSGGNILIWSKGTN-----------------------RISKQVH 284 (626)
T ss_pred cCCceEEEeeccccccceEEEEEEEcC-CCC-EEeecCCceEEEEeCCCc-----------------------eEEeEee
Confidence 9887766554433333 6799999998 766 889999999999999772 2233334
Q ss_pred cCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCC-----CCc--------------------------eeeeee
Q 022590 163 VHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGE-----GTA--------------------------DILQKY 210 (294)
Q Consensus 163 ~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~--------------------------~~~~~~ 210 (294)
.|++.|.+++.- ...|++|+.|+.|..||-.-.+....+ +.. ......
T Consensus 285 aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v 364 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV 364 (626)
T ss_pred ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence 899999999886 556777999999999994332221110 000 001223
Q ss_pred ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc---------------------------------
Q 022590 211 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS--------------------------------- 257 (294)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------------------------- 257 (294)
..|......++.+|+. +.+++++.|+.+++|+ ..+++....+.
T Consensus 365 ~gh~delwgla~hps~--~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSK--NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred EecccceeeEEcCCCh--hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEeccccee
Confidence 3455677788888887 5788888999999998 22211111111
Q ss_pred --ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 258 --HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 258 --~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
......++++++|+|+|.+||.|+.|+.|++|.+..
T Consensus 441 v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 441 VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 001257899999999999999999999999998753
No 145
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.4e-25 Score=155.37 Aligned_cols=221 Identities=18% Similarity=0.208 Sum_probs=154.1
Q ss_pred ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE--EEeeccCCCCCceeEEEEecCCCceEEeeecCCcE
Q 022590 47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 124 (294)
Q Consensus 47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i 124 (294)
..+++|.+.|++++|+. +++.|++++.|++|++|+++.-... +.+.. .-.-+..+.+.|.|+-..+++++-...++
T Consensus 80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEE
Confidence 45689999999999999 9999999999999999999753211 11110 00123468899999555666666677789
Q ss_pred EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCC
Q 022590 125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEG 202 (294)
Q Consensus 125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 202 (294)
++|.+...... ...+.+... .....-..|.-.+..+-. .+.++++++.|..|.+|+++ ++
T Consensus 158 ~vyk~~K~~dG-~~~~~~v~~----------D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq------ 219 (420)
T KOG2096|consen 158 CVYKLVKKTDG-SGSHHFVHI----------DNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ------ 219 (420)
T ss_pred EEEEeeecccC-CCCcccccc----------cccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc------
Confidence 99988763220 000000000 000111223333333322 37799999999999999998 43
Q ss_pred CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC---CCc-eeeeeccccccCCCeEEEEEccCCCEEE
Q 022590 203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS---SPP-VLIARLSHAQSKSPIRQTAMSYDGSTIL 278 (294)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 278 (294)
.+..+......-+..+.||+| +++++++-.-.|++|.+-- ++. .....+...+|...|..++|+++...++
T Consensus 220 ---~L~~idtnq~~n~~aavSP~G--RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 220 ---LLQSIDTNQSSNYDAAVSPDG--RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV 294 (420)
T ss_pred ---eeeeeccccccccceeeCCCC--cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence 466666666667778999999 6899998888999999732 211 1222333559999999999999999999
Q ss_pred EeccCCcEEEEecC
Q 022590 279 SCCEDGAIWRWDAI 292 (294)
Q Consensus 279 s~~~dg~i~vw~~~ 292 (294)
+.+.||+++|||+.
T Consensus 295 tvSkDG~wriwdtd 308 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTD 308 (420)
T ss_pred EEecCCcEEEeecc
Confidence 99999999999985
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=2.1e-24 Score=157.99 Aligned_cols=255 Identities=23% Similarity=0.336 Sum_probs=166.6
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc---------ccceecccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV 78 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i 78 (294)
.++|+.+.|. ++..+.+++|+.|..|++|.+..+. ....+..|..+|+++.|+| ++++|++|+.+|.|
T Consensus 13 ~~pv~s~dfq--~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQ--KNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEec--cCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceE
Confidence 4689999997 4444479999999999999886432 2345678999999999999 99999999999999
Q ss_pred EEEEcC--------C-----CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590 79 RLWNVQ--------T-----GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 145 (294)
Q Consensus 79 ~vwd~~--------~-----~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 145 (294)
.+|-.. + .+.-.......+|...|..++|+| ++.++++++.|..+++||+..+.
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~------------ 156 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQ------------ 156 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccce------------
Confidence 999765 2 111222223347999999999999 99999999999999999999843
Q ss_pred CCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCC-------------------------
Q 022590 146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS------------------------- 198 (294)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~------------------------- 198 (294)
....+..|...+..++|+ ++++++-+.|...+.+.+......
T Consensus 157 -----------l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfh 225 (434)
T KOG1009|consen 157 -----------LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFH 225 (434)
T ss_pred -----------eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeee
Confidence 233334444444444443 333333333332222221111000
Q ss_pred -----------------------------------------CCCCCceeeeeeecCCCCeeEEEEccc------------
Q 022590 199 -----------------------------------------PGEGTADILQKYPVPECDIWFIKFSCD------------ 225 (294)
Q Consensus 199 -----------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~------------ 225 (294)
.......+...++....+...+.|+|-
T Consensus 226 DeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~ 305 (434)
T KOG1009|consen 226 DETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF 305 (434)
T ss_pred cCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence 000011123333334444444555441
Q ss_pred ---CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 226 ---FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 226 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
-.++++++-...+.|++||.++..+.....- .|-..|+.++|++||.+|+..|.||...+--++
T Consensus 306 ~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n---ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 306 LFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN---IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred ccccccceEEEEeecceEEEeccccccceEEEee---eeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence 0112333333456799999998775444332 566789999999999999999999987765554
No 147
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.94 E-value=2.2e-24 Score=151.59 Aligned_cols=254 Identities=18% Similarity=0.277 Sum_probs=191.7
Q ss_pred CceeEEEEEeecCCCceEEEEeec----CCeEEEEEcC--Ccccccee-cccCcceEEEEeCCCC----CceEEEeeCCC
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGI----NGIIRVIDVS--NEKLHKSF-VGHGDSINEIRTQPLK----PSLVVSASKDE 76 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~----dg~i~iw~~~--~~~~~~~~-~~h~~~v~~~~~~~~~----~~~l~s~~~dg 76 (294)
.-+++++.|+..|+.+.+||.|+. .+.|.|..++ +++.+..- ..|.-+++.+.|.|+. .++||+.+ -
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--D 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--C
Confidence 357899999988888878999984 4667776654 33332211 3588999999999942 24666654 4
Q ss_pred cEEEEEcCCCceEEE----e--eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590 77 SVRLWNVQTGICILI----F--AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 150 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~----~--~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
.+|+|.+...+.... + .....+..+++++.|+..+.+++.+++-|-+..+||+..+..
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~---------------- 185 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS---------------- 185 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc----------------
Confidence 799999874221111 1 112246789999999998999999999999999999998310
Q ss_pred CceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC
Q 022590 151 TKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 227 (294)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (294)
......+..|...|..++|. -+.|++.+.||.+|+||+|..+ +...+.+-+.+..+...++|++...
T Consensus 186 ----~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le------HSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 186 ----GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE------HSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred ----cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc------cceEEecCCCCCCcceeeccCcCCc
Confidence 11245678899999999997 4789999999999999999876 5556666666667888899988775
Q ss_pred cceEEEEc-CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC-CCEEEEeccCCcEEEEecCC
Q 022590 228 YNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 228 ~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~~~~ 293 (294)
+++|+-. ....|.+.|++... ....++. .|++.|+.++|.|. ...|.|++.|..+.+||+..
T Consensus 256 -nymATf~~dS~~V~iLDiR~P~-tpva~L~--~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 256 -NYMATFAMDSNKVVILDIRVPC-TPVARLR--NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred -hHHhhhhcCCceEEEEEecCCC-cceehhh--cCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 5676644 45679999999874 3444555 89999999999996 46899999999999999864
No 148
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.94 E-value=1.3e-24 Score=158.58 Aligned_cols=231 Identities=20% Similarity=0.322 Sum_probs=170.9
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-------cccceecccCcceEEEEeCCCCCceEEEeeCCC
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE 76 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 76 (294)
+.+|.++|..++|++..| +.+|+|+.|.+|.||.+..+ +++..+.+|...|--++|+|.-.+.|++++.|.
T Consensus 77 v~GHt~~vLDi~w~PfnD--~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFND--CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred ccCccccccccccCccCC--ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 458999999999995544 37999999999999998765 346678899999999999998889999999999
Q ss_pred cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590 77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 156 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
+|.+||+.+|+.+..+. |...|+++.|+. ++.+|++.+.|..|+|||.+.+ .
T Consensus 155 ~v~iWnv~tgeali~l~----hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~-----------------------~ 206 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG-----------------------T 206 (472)
T ss_pred eEEEEeccCCceeeecC----CCCeEEEEEecc-CCceeeeecccceeEEEcCCCC-----------------------c
Confidence 99999999999988876 999999999998 9999999999999999999983 3
Q ss_pred ceEEeecCCCce-eecce--ecceEEEee---CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590 157 PVFIASVHSNYV-DCNRW--LGDFILSKS---VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 230 (294)
Q Consensus 157 ~~~~~~~~~~~i-~~~~~--~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 230 (294)
.+....+|.+.= ..+.| ++..+-+|. .+..+-+||....+.. ..+.++... ..|.---+.++.+ -+
T Consensus 207 ~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP------~~~~elDtS-nGvl~PFyD~dt~-iv 278 (472)
T KOG0303|consen 207 VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP------IALQELDTS-NGVLLPFYDPDTS-IV 278 (472)
T ss_pred EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc------ceeEEeccC-CceEEeeecCCCC-EE
Confidence 344444555421 22233 255333332 3678999999877642 233444433 3344444566664 45
Q ss_pred EEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590 231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 273 (294)
Q Consensus 231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 273 (294)
.++|-.|+.|+.|.+....+. +..+..-....+=+.+.|-|.
T Consensus 279 Yl~GKGD~~IRYyEit~d~P~-~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 279 YLCGKGDSSIRYFEITNEPPF-VHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEEecCCcceEEEEecCCCce-eEEecccccCCcccccccccc
Confidence 567888999999999887642 333332233345566666664
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=5.4e-25 Score=165.32 Aligned_cols=209 Identities=14% Similarity=0.275 Sum_probs=174.5
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 104 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 104 (294)
|+++|+..+.|+|||+....+.+.+++|+..|+++.++. ...+||+++..|.|.|..+.++.....|.. +....|.-
T Consensus 93 y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--~sgqsvRl 169 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI--DSGQSVRL 169 (673)
T ss_pred eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec--CCCCeEEE
Confidence 999999999999999997778888999999999999998 778999999999999999999988877773 23456779
Q ss_pred EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece-EEeecCCCceeeccee---cceEEE
Q 022590 105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV-FIASVHSNYVDCNRWL---GDFILS 180 (294)
Q Consensus 105 l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~---~~~l~~ 180 (294)
+.|+|....+|.+++.+|.|.+||+.. ..|. .....|..+...++|+ ..+|++
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g-----------------------~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQG-----------------------MSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccC-----------------------CCcccchhhhccCCcCcceecCCccceEEE
Confidence 999998888899999999999999998 3333 3456799999999997 678999
Q ss_pred eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccc
Q 022590 181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 260 (294)
Q Consensus 181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 260 (294)
.+.|..|.+||.+.... ...+. -..+...++|.++| .+|++|...|.|..||++..+. ++..+. .
T Consensus 227 VG~Dkki~~yD~~s~~s---------~~~l~-y~~Plstvaf~~~G--~~L~aG~s~G~~i~YD~R~~k~-Pv~v~s--a 291 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQAS---------TDRLT-YSHPLSTVAFSECG--TYLCAGNSKGELIAYDMRSTKA-PVAVRS--A 291 (673)
T ss_pred ecccceEEEeecccccc---------cceee-ecCCcceeeecCCc--eEEEeecCCceEEEEecccCCC-CceEee--e
Confidence 99999999999986542 22222 24568899999999 6999999999999999998753 333333 6
Q ss_pred cCCCeEEEEEccCC
Q 022590 261 SKSPIRQTAMSYDG 274 (294)
Q Consensus 261 ~~~~v~~~~~s~~~ 274 (294)
|...|++++|-|..
T Consensus 292 h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 HDASVTRVAFQPSP 305 (673)
T ss_pred cccceeEEEeeecc
Confidence 77889999998764
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=6.8e-25 Score=170.61 Aligned_cols=272 Identities=16% Similarity=0.187 Sum_probs=201.7
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-----------------------------------------
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------------------------------------- 43 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------------------------------------- 43 (294)
-+|++-|+++.|. |.+. .|++++.|.++.+|..++.
T Consensus 264 ~GHeDWV~sv~W~--p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 264 MGHEDWVYSVWWH--PEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred cCcccceEEEEEc--cchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 3899999999997 8886 7999999999999976432
Q ss_pred -----------cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC-CCceEEEeeccCCCCCceeEEEEecCC
Q 022590 44 -----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSD 111 (294)
Q Consensus 44 -----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~ 111 (294)
.+...+.+|.+.|++++|.| .+.+|++.+.|.+-|++-.- ....-..+..++-|.-.++|++|-+ +
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~ 418 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-E 418 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-C
Confidence 01122357999999999999 89999999999999998654 2222344444456888999999997 6
Q ss_pred CceEEeeecCCcEEEEeccccc----------ccccc----------ceeecC-------------------CCCCC-C-
Q 022590 112 IYRIASCGMDNTVKIWSMKEFW----------TYVEK----------SFTWTD-------------------LPSKF-P- 150 (294)
Q Consensus 112 ~~~l~~~~~dg~i~~wd~~~~~----------~~~~~----------~~~~~~-------------------~~~~~-~- 150 (294)
...|++|.....+|+|+....- ..... .+.... .+... +
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 8889999999999999986510 00000 000000 00000 0
Q ss_pred ------------CceeeeceEEeecCCCceeeccee--cceEEEeeCCC-----eEEEecCCCCCCCCCCCCceeeeeee
Q 022590 151 ------------TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN-----EIVLWEPKMKEQSPGEGTADILQKYP 211 (294)
Q Consensus 151 ------------~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~ 211 (294)
....-..+..+.+|...|.+++.+ ++++++++... .|++|+..+.. ..+.+.
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~---------~~~~L~ 569 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL---------QVQELE 569 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh---------hhheec
Confidence 000111234567899999999997 89999987643 59999998665 456788
Q ss_pred cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 212 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
.|.-.|+.++|+|++ .+|++.+.|.++.+|........ ...+. ...|..-|.++.|+|++.+++|+|.|.+|+||.
T Consensus 570 ~HsLTVT~l~FSpdg--~~LLsvsRDRt~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDG--RYLLSVSRDRTVSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ccceEEEEEEECCCC--cEEEEeecCceEEeeeeecccch-hhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 899999999999999 69999999999999998655321 22211 447888999999999999999999999999998
Q ss_pred cCC
Q 022590 291 AIP 293 (294)
Q Consensus 291 ~~~ 293 (294)
...
T Consensus 647 ~~~ 649 (764)
T KOG1063|consen 647 EPD 649 (764)
T ss_pred ccC
Confidence 753
No 151
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.9e-25 Score=159.07 Aligned_cols=247 Identities=19% Similarity=0.262 Sum_probs=174.0
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC-CCceEEEeeCCCcEEEEEcCCCceEEEeec---------
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAG--------- 94 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------- 94 (294)
.+|++.++|.|++||..+++.+..++++...++.++|... ....+.+|+.||+|++||++.......+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6999999999999999999999999999999999999764 467899999999999999985432211110
Q ss_pred ---------------------------------------cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccc
Q 022590 95 ---------------------------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY 135 (294)
Q Consensus 95 ---------------------------------------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 135 (294)
...|...|++++|+|.++++|++|+.||.+.+||+.....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E- 200 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE- 200 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc-
Confidence 0168899999999999999999999999999999987311
Q ss_pred cccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc---eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec
Q 022590 136 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD---FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV 212 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 212 (294)
..++.....|...|.++.|.++ .+.+-+...+..+|+++.+.................
T Consensus 201 -------------------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r 261 (376)
T KOG1188|consen 201 -------------------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR 261 (376)
T ss_pred -------------------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence 2344555668888999999732 688889999999999998764222111100000000
Q ss_pred CCCC-eeEE-EEcccCCcceEEEEcCCCeEEEEeccC---CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590 213 PECD-IWFI-KFSCDFHYNAAAIGNREGKIFVWELQS---SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 287 (294)
Q Consensus 213 ~~~~-i~~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 287 (294)
.... -+-+ ..+|.......+.|+.-|...++-+.. +...........+|...|+++.|...+.++.||++||.+.
T Consensus 262 ~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~ 341 (376)
T KOG1188|consen 262 KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQ 341 (376)
T ss_pred hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEE
Confidence 0000 0111 233444433444444466666665543 2211122222445778899999999999999999999999
Q ss_pred EEec
Q 022590 288 RWDA 291 (294)
Q Consensus 288 vw~~ 291 (294)
+|..
T Consensus 342 ~Wk~ 345 (376)
T KOG1188|consen 342 AWKV 345 (376)
T ss_pred EEec
Confidence 9984
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3e-24 Score=159.65 Aligned_cols=246 Identities=14% Similarity=0.195 Sum_probs=187.5
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccc--eecccC-cceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK--SFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
+-+|.+.+|+ |+|...+++++....++.||+.+.+..+ ...++. ..+.....++ ++++|+..+..|.|.+....
T Consensus 257 ~fPi~~a~f~--p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhak 333 (514)
T KOG2055|consen 257 KFPIQKAEFA--PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAK 333 (514)
T ss_pred cCccceeeec--CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhh
Confidence 4678888887 8898789999999999999998876433 334443 4577788899 88999999999999999999
Q ss_pred CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
+++.+..++ -.+.|..++|+. ++..|++++.+|.|.+||+++. ..+..+. .
T Consensus 334 T~eli~s~K----ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~-----------------------~~~~rf~-D 384 (514)
T KOG2055|consen 334 TKELITSFK----IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQN-----------------------SCLHRFV-D 384 (514)
T ss_pred hhhhhheee----eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCc-----------------------ceEEEEe-e
Confidence 999999998 788999999997 7788888888999999999983 1222222 1
Q ss_pred CCce----eecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc--CCC
Q 022590 165 SNYV----DCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REG 238 (294)
Q Consensus 165 ~~~i----~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg 238 (294)
.+.| .|++.++.+||+|+..|.|.|||.++..... ...++..+..-...|+++.|+|+.. +|+.++ .+.
T Consensus 385 ~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---~PkPik~~dNLtt~Itsl~Fn~d~q--iLAiaS~~~kn 459 (514)
T KOG2055|consen 385 DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---NPKPIKTVDNLTTAITSLQFNHDAQ--ILAIASRVKKN 459 (514)
T ss_pred cCccceeeeeecCCCceEEeccCcceEEEeccchhhccC---CCCchhhhhhhheeeeeeeeCcchh--hhhhhhhcccc
Confidence 2222 2344458999999999999999976543221 2234455555566799999999995 555544 577
Q ss_pred eEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 239 KIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
.+++-.+.+.. ....++ ....-+.|+||+|||.+.+||.|.++|.+.+|.+.
T Consensus 460 alrLVHvPS~T--VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 460 ALRLVHVPSCT--VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEEecccee--eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 89999887754 222222 12334679999999999999999999999999874
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=1.2e-24 Score=155.23 Aligned_cols=259 Identities=15% Similarity=0.204 Sum_probs=181.9
Q ss_pred cccCceeEEEEEe-ecCCCce-EEEEeecCCeEEEEEcCCccc---cceec--ccCcceEEEEeCCC---CCceEEEeeC
Q 022590 5 DQKEESFYTVSWA-CNVDGIP-FLVAGGINGIIRVIDVSNEKL---HKSFV--GHGDSINEIRTQPL---KPSLVVSASK 74 (294)
Q Consensus 5 ~~h~~~v~~~~~~-~~~~~~~-~l~~~~~dg~i~iw~~~~~~~---~~~~~--~h~~~v~~~~~~~~---~~~~l~s~~~ 74 (294)
++|..+|+.++|+ +.-.+.+ .+|+.+. ..+.+|+.....- ++.+. .|......++|+-+ ...++|+|+.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 4888999999998 3322322 4555554 5899998765432 23332 36777888888763 2458999999
Q ss_pred CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590 75 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 154 (294)
Q Consensus 75 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (294)
-|.|+|.|+.+++....+. +|...|+.|.++|.+.+++++++.|..|++|++++...
T Consensus 114 ~GvIrVid~~~~~~~~~~~---ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C-------------------- 170 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYR---GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC-------------------- 170 (385)
T ss_pred eeEEEEEecchhhhcccee---ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--------------------
Confidence 9999999999999999888 79999999999998889999999999999999998321
Q ss_pred eeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC-------------------CCceeeeeeecC
Q 022590 155 QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE-------------------GTADILQKYPVP 213 (294)
Q Consensus 155 ~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------------~~~~~~~~~~~~ 213 (294)
-.......+|.+.|.++.|+ ++++++++.|..|++|++...+..... .+......-..|
T Consensus 171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 11233567899999999998 889999999999999999844221000 000011122233
Q ss_pred CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC-Cc-----------eeeeeccccccCCCeEE--EEEccCCCEEEE
Q 022590 214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-PP-----------VLIARLSHAQSKSPIRQ--TAMSYDGSTILS 279 (294)
Q Consensus 214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~-----------~~~~~~~~~~~~~~v~~--~~~s~~~~~l~s 279 (294)
...|.++.|-- +++++-+-++.|..|..... +. ....++. -....|.- .+|.|-++.||.
T Consensus 251 rnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~--~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 251 RNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD--YPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec--cCccceEEEEEeecHHHHHHhh
Confidence 34444444432 47888888999999987221 11 1111122 12233444 455677899999
Q ss_pred eccCCcEEEEecCC
Q 022590 280 CCEDGAIWRWDAIP 293 (294)
Q Consensus 280 ~~~dg~i~vw~~~~ 293 (294)
|.+.|.|++||++.
T Consensus 325 gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDN 338 (385)
T ss_pred ccCCCcEEEEECCC
Confidence 99999999999975
No 154
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=168.35 Aligned_cols=241 Identities=15% Similarity=0.203 Sum_probs=184.3
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 86 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 86 (294)
+.+.|.+++.. +. +|++|+.+++|.+|...+++.-..+...+-++++++|+. ++.++|.|+.|-.|++-++...
T Consensus 55 ~g~~v~~ia~~----s~-~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 55 SGELVSSIACY----SN-HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred cCceeEEEeec----cc-ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEecccc
Confidence 66777777763 44 899999999999999999888777777888999999999 9999999999999999999999
Q ss_pred ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590 87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (294)
.....+. +|.++|.++.|+| .+++||+.+.||.|++||+.++....... ....... .....
T Consensus 129 s~~~~lr---gh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~----~v~k~n~-----------~~~s~ 189 (933)
T KOG1274|consen 129 SQEKVLR---GHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLT----GVDKDNE-----------FILSR 189 (933)
T ss_pred chheeec---ccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcc----cCCcccc-----------ccccc
Confidence 8888888 7999999999999 99999999999999999999743322111 1000000 00134
Q ss_pred ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590 167 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 244 (294)
Q Consensus 167 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d 244 (294)
.+..++|+ +..++..+.|+.|++|+....+... .++ ...+...+..+.|+|.| .|||+++.+|.|.|||
T Consensus 190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f------~Lr-~~~~ss~~~~~~wsPnG--~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF------KLR-DKLSSSKFSDLQWSPNG--KYIAASTLDGQILVWN 260 (933)
T ss_pred eeeeeeecCCCCeEEeeccCCeEEEEccCCceehe------eec-ccccccceEEEEEcCCC--cEEeeeccCCcEEEEe
Confidence 45566676 6788888999999999998876311 111 12233448899999998 6999999999999999
Q ss_pred ccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590 245 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 289 (294)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw 289 (294)
.++.+. . .....|.+++|.|+.+.+-.-...|...+|
T Consensus 261 v~t~~~---~-----~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 261 VDTHER---H-----EFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cccchh---c-----cccceeEEEecCCCCCeeEEEeeccccccC
Confidence 998321 1 233579999999998766555555544433
No 155
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.93 E-value=7.1e-24 Score=149.00 Aligned_cols=247 Identities=15% Similarity=0.281 Sum_probs=180.7
Q ss_pred ccCceeEEEEEeecCCCce--EEEEeecCCeEEEEEcCCcc----cccee-----cccCcceEEEEeCCCCCceEEEeeC
Q 022590 6 QKEESFYTVSWACNVDGIP--FLVAGGINGIIRVIDVSNEK----LHKSF-----VGHGDSINEIRTQPLKPSLVVSASK 74 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~----~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~ 74 (294)
+|.-+++.+.|.+++.|.. +||+. .| .+|+|.+.... +...+ ..+.+++++..|+..+.+++.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs-~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS-SD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc-cC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 6888999999997665431 34444 34 79999987421 11111 2366799999999989999999999
Q ss_pred CCcEEEEEcCCCce---EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590 75 DESVRLWNVQTGIC---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 151 (294)
Q Consensus 75 dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
|-+..|||++++.. ...+. .|..+|..++|...+...||+.+.||.+|+||+|.....
T Consensus 172 DTTCTiWdie~~~~~~vkTQLI---AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS---------------- 232 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLI---AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS---------------- 232 (364)
T ss_pred cCeEEEEEEeeccccceeeEEE---ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc----------------
Confidence 99999999998733 23333 699999999999866789999999999999999983211
Q ss_pred ceeeeceEEeecCCCceeeccee---cceEEEeeCC-CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC
Q 022590 152 KYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 227 (294)
Q Consensus 152 ~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (294)
..++.-.....+...++|+ .+++++-..| ..|.+.|+|... ..+..+..|...|+.++|.|...
T Consensus 233 ----TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------tpva~L~~H~a~VNgIaWaPhS~ 300 (364)
T KOG0290|consen 233 ----TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------TPVARLRNHQASVNGIAWAPHSS 300 (364)
T ss_pred ----eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------cceehhhcCcccccceEecCCCC
Confidence 1111222224667778886 6788876655 569999999854 37888999999999999999987
Q ss_pred cceEEEEcCCCeEEEEeccCCCc--eeeeeccccccCCCeEEEEEcc-CCCEEEEeccCCcEEE
Q 022590 228 YNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWR 288 (294)
Q Consensus 228 ~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~v 288 (294)
..+++++.|..+.+||+...-. .....+.. ...+.|+.+.|++ .+.+++.+.. +++.+
T Consensus 301 -~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 301 -SHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred -ceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 7999999999999999986422 11111111 2346799999996 4567777754 34444
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=1.1e-24 Score=168.60 Aligned_cols=122 Identities=15% Similarity=0.246 Sum_probs=101.5
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc------ceecccCcceEEEEeCCCCCceEEEeeCCC
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH------KSFVGHGDSINEIRTQPLKPSLVVSASKDE 76 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 76 (294)
.+-.|.+.|+.+.|++-.|+ +||+++.|..|+||.+..+-.. ..+.+..-.|.++.|+|....+|+++. .|
T Consensus 74 ~l~~H~d~VtDl~FspF~D~--LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-~g 150 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADE--LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-HG 150 (1012)
T ss_pred eeecccceeeccCccccchh--hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-Cc
Confidence 45689999999999965555 7999999999999999744211 122334457899999997666777665 49
Q ss_pred cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
++.|||+.+++.+..+. +|...|.+..|+. ++.+|++++.|..|+|||.+.
T Consensus 151 ~v~i~D~stqk~~~el~---~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELS---GHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred eEEEEEcccCceeeccc---CCchhhhcccccc-CCceEeeecCCcceEEeCCcc
Confidence 99999999999988887 7999999999998 999999999999999999886
No 157
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.93 E-value=2.1e-24 Score=149.55 Aligned_cols=259 Identities=14% Similarity=0.162 Sum_probs=191.7
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 81 (294)
.|..|...|+++.|. .++ +|.+|..-|.|++|++.+.+....+. .|...|+.+.-.| + ..|.+-+.|+.+.+|
T Consensus 9 vLRp~~~~v~s~~fq--a~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQ--ANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILW 82 (323)
T ss_pred Eeccccchheehhhc--cch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEE
Confidence 456899999999995 444 69999999999999999999888888 6788999999999 4 568889999999999
Q ss_pred EcCCCceEEEeec---------------------------c-----------------------CCCCCceeEEEEecCC
Q 022590 82 NVQTGICILIFAG---------------------------A-----------------------GGHRNEVLSVDFHPSD 111 (294)
Q Consensus 82 d~~~~~~~~~~~~---------------------------~-----------------------~~~~~~v~~l~~~~~~ 111 (294)
++.-+..+..-.. . .+..+.+.+..+....
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 9865322111000 0 0122335555543222
Q ss_pred --CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeE
Q 022590 112 --IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI 187 (294)
Q Consensus 112 --~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i 187 (294)
.-++++|.++|.+.+||+............ ..-......|..+|.++.|. -+.=++|+.+..+
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~-------------~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS-------------SKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccc-------------cccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 245778889999999999985322221111 22344566789999999986 3344667777788
Q ss_pred EEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEE
Q 022590 188 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ 267 (294)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 267 (294)
..|.++.... ..+.-.+.......+..+.+-||+ .++|+++.|+.||+|+.++.++..+.+ -|...|++
T Consensus 230 ~~~Sl~~s~g-----slq~~~e~~lknpGv~gvrIRpD~--KIlATAGWD~RiRVyswrtl~pLAVLk----yHsagvn~ 298 (323)
T KOG0322|consen 230 VMYSLNHSTG-----SLQIRKEITLKNPGVSGVRIRPDG--KILATAGWDHRIRVYSWRTLNPLAVLK----YHSAGVNA 298 (323)
T ss_pred eeeeeccccC-----cccccceEEecCCCccceEEccCC--cEEeecccCCcEEEEEeccCCchhhhh----hhhcceeE
Confidence 8898875432 222334445556778899999999 599999999999999999998654443 56689999
Q ss_pred EEEccCCCEEEEeccCCcEEEEec
Q 022590 268 TAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 268 ~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
++|+|+...+|+++.|+.|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999986
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.8e-24 Score=161.49 Aligned_cols=240 Identities=15% Similarity=0.211 Sum_probs=176.6
Q ss_pred eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc--cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
.+++++|. ....-.+++.+.|..+++|.-... +....-+...+.-.|++... -..++++|+..+.|+|||++...
T Consensus 36 g~~s~~w~--~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQ--RRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS-QSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeecc--ccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh-cceeeeccCcCceeeehhhHHHH
Confidence 48899997 444223445567788999974322 11111111122334554444 34799999999999999998666
Q ss_pred eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC-CC
Q 022590 88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SN 166 (294)
Q Consensus 88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 166 (294)
+.+.++ +|...|+++.++. ...+||+++..|.|.+..+.+... ...+... ..
T Consensus 113 ~hr~lk---dh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~-----------------------tt~f~~~sgq 165 (673)
T KOG4378|consen 113 IHRFLK---DHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQK-----------------------TTTFTIDSGQ 165 (673)
T ss_pred Hhhhcc---CCcceeEEEEecC-CcceeEEeccCCcEEEEecccCcc-----------------------ccceecCCCC
Confidence 666666 7999999999998 778899999999999999988321 2222222 23
Q ss_pred ceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590 167 YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 243 (294)
Q Consensus 167 ~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~ 243 (294)
.|.-+.|+ ..+|.+++.+|.|.+||+..... .......|..+...++|+|... .+|++-+.|..|.+|
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--------~~~~~~~HsAP~~gicfspsne-~l~vsVG~Dkki~~y 236 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--------IFHASEAHSAPCRGICFSPSNE-ALLVSVGYDKKINIY 236 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCc--------ccchhhhccCCcCcceecCCcc-ceEEEecccceEEEe
Confidence 44566665 45788899999999999986542 4455567888889999999986 688999999999999
Q ss_pred eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
|....+. ...+.. ..|...++|+++|.+|+.|+..|.|..||++.
T Consensus 237 D~~s~~s--~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 237 DIRSQAS--TDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ecccccc--cceeee---cCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 9997653 333322 25799999999999999999999999999975
No 159
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.93 E-value=3e-23 Score=164.50 Aligned_cols=257 Identities=13% Similarity=0.097 Sum_probs=188.9
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc--ccee----cccCcceEEEEeCCCCCc--eEEEeeCCCcE
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSF----VGHGDSINEIRTQPLKPS--LVVSASKDESV 78 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~----~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i 78 (294)
-..+|.|++|+ |....++|.|+.+|.|.+||+..+.. ...+ ..|..+|+.+.|.. +.. -+++++.||.|
T Consensus 241 ~~s~v~~~~f~--p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 241 SPSEVTCLKFC--PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSI 317 (555)
T ss_pred cCCceeEEEec--cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcE
Confidence 35678888988 65555999999999999999987654 2222 35889999999977 433 48999999999
Q ss_pred EEEEcCCCceEEE---eecc------CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCC
Q 022590 79 RLWNVQTGICILI---FAGA------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 149 (294)
Q Consensus 79 ~vwd~~~~~~~~~---~~~~------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 149 (294)
..|+++.-..... .... ..-...+++++|.+.+.+.|+.|+.+|.|..-.-........
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------ 385 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------ 385 (555)
T ss_pred eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc------------
Confidence 9998864322111 0000 012346899999998899999999999988744333211110
Q ss_pred CCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccC
Q 022590 150 PTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 226 (294)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 226 (294)
....+......|.++|.++.++ ...|++++ |.+++||....... ++..+..+...+++++|||..
T Consensus 386 ---~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~--------Pl~~~~~~~~~v~~vaWSptr 453 (555)
T KOG1587|consen 386 ---VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS--------PLLSLDSSPDYVTDVAWSPTR 453 (555)
T ss_pred ---ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC--------cchhhhhccceeeeeEEcCcC
Confidence 1123345677799999999987 44555555 99999999873221 445555555669999999987
Q ss_pred CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 227 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
. ..++++..+|.+.+||+............ .+....+.+.|+++|+.|+.|...|.+++|++.+
T Consensus 454 p-avF~~~d~~G~l~iWDLl~~~~~Pv~s~~--~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 454 P-AVFATVDGDGNLDIWDLLQDDEEPVLSQK--VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred c-eEEEEEcCCCceehhhhhccccCCccccc--ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 6 68999999999999999887655555554 3356778889999999999999999999999853
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.92 E-value=6.3e-23 Score=144.22 Aligned_cols=251 Identities=14% Similarity=0.197 Sum_probs=185.4
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecC-------CeEEEEEcCCc---------cccceec-ccCcceEEEEeCCCCCc
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGIN-------GIIRVIDVSNE---------KLHKSFV-GHGDSINEIRTQPLKPS 67 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~---------~~~~~~~-~h~~~v~~~~~~~~~~~ 67 (294)
..|.+.|..++-+ |..+.+|++...+ ..+.||.+... +++..+. .+-+.|.|+.|.| ++.
T Consensus 60 ~h~agEvw~las~--P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P-ns~ 136 (370)
T KOG1007|consen 60 FHHAGEVWDLASS--PFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP-NSD 136 (370)
T ss_pred hcCCcceehhhcC--CCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC-CCC
Confidence 3567888888877 6555477776553 24779988643 2334443 4556899999999 777
Q ss_pred eEEEeeCCCcEEEEEcCCCce-EEEeec--cCCCCCceeEEEEec-CCCceEEeeecCCcEEEEeccccccccccceeec
Q 022590 68 LVVSASKDESVRLWNVQTGIC-ILIFAG--AGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 143 (294)
Q Consensus 68 ~l~s~~~dg~i~vwd~~~~~~-~~~~~~--~~~~~~~v~~l~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 143 (294)
.+++-. |..|.+|++..+.. ...+.. ..++....++-+|+| .+++.+++.+ |++++.||+|+..
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~---------- 204 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK---------- 204 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchh----------
Confidence 777766 78999999987765 333321 124566788899999 5777777665 8999999999842
Q ss_pred CCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590 144 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 220 (294)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 220 (294)
.....-..|...|..+.|+ ..+|++|+.||.|++||.|..+. ++++++.|...++++
T Consensus 205 ------------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--------pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 205 ------------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--------PVQELPGHSHWVWAV 264 (370)
T ss_pred ------------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--------cccccCCCceEEEEE
Confidence 2233446688889999998 44899999999999999998654 788899999999999
Q ss_pred EEcccCCcceEEEEcCCCeEEEEeccCCC------------------------ceeeeec-cccccCCCeEEEEEccCCC
Q 022590 221 KFSCDFHYNAAAIGNREGKIFVWELQSSP------------------------PVLIARL-SHAQSKSPIRQTAMSYDGS 275 (294)
Q Consensus 221 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------~~~~~~~-~~~~~~~~v~~~~~s~~~~ 275 (294)
.|.|.-. .++++|+.|..|.+|...+-. +++--.+ ....|...|.+++||.-..
T Consensus 265 Rfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 265 RFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 9999876 689999999999999764321 0010011 1346788999999998655
Q ss_pred -EEEEeccCCcEEEEec
Q 022590 276 -TILSCCEDGAIWRWDA 291 (294)
Q Consensus 276 -~l~s~~~dg~i~vw~~ 291 (294)
.+|+-+.||.+.|=++
T Consensus 344 WiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSV 360 (370)
T ss_pred eeEEEeccCceEEeecC
Confidence 5567899999887554
No 161
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=4.6e-23 Score=160.58 Aligned_cols=281 Identities=17% Similarity=0.229 Sum_probs=188.4
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 79 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 79 (294)
.+++.|..+|+|+.|-+..+-..++++|+.||.|.+|.+.... .+..+++|...+.|+.-.+ ........|+++.
T Consensus 48 t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~---~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 48 TTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS---SVMTCKAADGTVS 124 (764)
T ss_pred EeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee---eEEEeeccCceEE
Confidence 3678999999999998544433479999999999999998443 4455666666665554322 2333336889999
Q ss_pred EEEcCCCce--E---------------------------------------------EEeeccCCCCCceeEEEEecCC-
Q 022590 80 LWNVQTGIC--I---------------------------------------------LIFAGAGGHRNEVLSVDFHPSD- 111 (294)
Q Consensus 80 vwd~~~~~~--~---------------------------------------------~~~~~~~~~~~~v~~l~~~~~~- 111 (294)
+||.+..+. . .......||.+.|.+|+|....
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 998843330 0 0011123899999999998633
Q ss_pred -CceEEeeecCCcEEEEecccccccc--ccceeecCCCCC---CCCceeee---ceEEeecCCCceeeccee--cceEEE
Q 022590 112 -IYRIASCGMDNTVKIWSMKEFWTYV--EKSFTWTDLPSK---FPTKYVQF---PVFIASVHSNYVDCNRWL--GDFILS 180 (294)
Q Consensus 112 -~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~i~~~~~~--~~~l~~ 180 (294)
..+|++++.|..||+|.+.-..... +.+......+.. ........ ....+.+|.+.|.++.|+ +..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 3588999999999999997644221 111111111110 00001110 012345899999999998 557999
Q ss_pred eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccc
Q 022590 181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 260 (294)
Q Consensus 181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 260 (294)
++.|.++.+|...+..-... ....+....+........-|+|++ +.+++-+..|..++|..... ..........+
T Consensus 285 ASaDksmiiW~pd~~tGiWv--~~vRlGe~gg~a~GF~g~lw~~n~--~~ii~~g~~Gg~hlWkt~d~-~~w~~~~~iSG 359 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWV--DVVRLGEVGGSAGGFWGGLWSPNS--NVIIAHGRTGGFHLWKTKDK-TFWTQEPVISG 359 (764)
T ss_pred cccCcceEEEecCCccceEE--EEEEeecccccccceeeEEEcCCC--CEEEEecccCcEEEEeccCc-cceeecccccc
Confidence 99999999999875421100 001122222334567888999999 68889999999999993332 22344444559
Q ss_pred cCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 261 SKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 261 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
|...|++++|+|.|.+|++.|.|.+-|++-
T Consensus 360 H~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 360 HVDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred ccccceeeeecCCCCEEEEeccccceeeec
Confidence 999999999999999999999999988874
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-24 Score=178.18 Aligned_cols=210 Identities=16% Similarity=0.271 Sum_probs=177.0
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
..+.|.++|..+.|+ +...++||+|+.||.|.|||+.+.+....+. ...+.|.+++|+......|++++.+|.+.|
T Consensus 111 ~~~~h~G~V~gLDfN--~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i 188 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFN--PFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI 188 (1049)
T ss_pred hhcccCCceeeeecc--ccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCcee
Confidence 456899999999998 6555599999999999999998865554442 256789999999867789999999999999
Q ss_pred EEcCCCceEEEeeccCCCC--CceeEEEEecCCCceEEeeecCC---cEEEEeccccccccccceeecCCCCCCCCceee
Q 022590 81 WNVQTGICILIFAGAGGHR--NEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 155 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (294)
||++..+.+..+.. +. ..+..++|+|+....+++++.|. .|.+||+|.- .
T Consensus 189 WDlr~~~pii~ls~---~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----------------------s 243 (1049)
T KOG0307|consen 189 WDLRKKKPIIKLSD---TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----------------------S 243 (1049)
T ss_pred ccccCCCccccccc---CCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----------------------C
Confidence 99998888777763 33 35789999997778888887654 5899999973 4
Q ss_pred eceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590 156 FPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 232 (294)
Q Consensus 156 ~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 232 (294)
.|+..+.+|...|.++.|+ ..++++++.|++|.+|+.++++ .+..++.....+..+.|+|... ..++
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE---------vl~~~p~~~nW~fdv~w~pr~P-~~~A 313 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE---------VLGELPAQGNWCFDVQWCPRNP-SVMA 313 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce---------EeeecCCCCcceeeeeecCCCc-chhh
Confidence 5677778999999999997 5799999999999999999876 6778888788899999999886 5889
Q ss_pred EEcCCCeEEEEeccCCC
Q 022590 233 IGNREGKIFVWELQSSP 249 (294)
Q Consensus 233 ~~~~dg~i~i~d~~~~~ 249 (294)
+.+-||.|.||.+....
T Consensus 314 ~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 314 AASFDGKISIYSLQGTD 330 (1049)
T ss_pred hheeccceeeeeeecCC
Confidence 99999999999997754
No 163
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=5.8e-22 Score=152.00 Aligned_cols=226 Identities=15% Similarity=0.133 Sum_probs=155.9
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 103 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 103 (294)
++++++.|+.|++||+.+++.+..+..+. .+.+++|+| ++..+ ++++.++.|++||..+++....+. .+. .+.
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~-~~~ 76 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGP-DPE 76 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEecc---CCC-Ccc
Confidence 78899999999999999999888887654 467899999 66655 677789999999999988877665 233 356
Q ss_pred EEEEecCCCceE-EeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEE
Q 022590 104 SVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 180 (294)
Q Consensus 104 ~l~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 180 (294)
.++|+| +++.+ ++++.|+.+++||+++.. .+..+. +...+.++.|+ ++++++
T Consensus 77 ~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~-----------------------~~~~~~-~~~~~~~~~~~~dg~~l~~ 131 (300)
T TIGR03866 77 LFALHP-NGKILYIANEDDNLVTVIDIETRK-----------------------VLAEIP-VGVEPEGMAVSPDGKIVVN 131 (300)
T ss_pred EEEECC-CCCEEEEEcCCCCeEEEEECCCCe-----------------------EEeEee-CCCCcceEEECCCCCEEEE
Confidence 789999 65555 555678999999998721 122221 12234556665 778888
Q ss_pred eeCCC-eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE-EEEcCCCeEEEEeccCCCceeeeeccc
Q 022590 181 KSVDN-EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA-AIGNREGKIFVWELQSSPPVLIARLSH 258 (294)
Q Consensus 181 ~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (294)
+..++ .+.+||.++.+ ....... ...+..++|+|++. .+ +++..++.|++||+++.+.........
T Consensus 132 ~~~~~~~~~~~d~~~~~---------~~~~~~~-~~~~~~~~~s~dg~--~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 132 TSETTNMAHFIDTKTYE---------IVDNVLV-DQRPRFAEFTADGK--ELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred EecCCCeEEEEeCCCCe---------EEEEEEc-CCCccEEEECCCCC--EEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 77765 56778987653 2222222 23456789999984 55 455579999999999876433222211
Q ss_pred c-cc--CCCeEEEEEccCCCEEEE-eccCCcEEEEecCC
Q 022590 259 A-QS--KSPIRQTAMSYDGSTILS-CCEDGAIWRWDAIP 293 (294)
Q Consensus 259 ~-~~--~~~v~~~~~s~~~~~l~s-~~~dg~i~vw~~~~ 293 (294)
. .+ ......++|+|++++++. .+.++.+.+||+++
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 0 01 122356889999998654 45567899999864
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.92 E-value=1.9e-23 Score=152.64 Aligned_cols=207 Identities=19% Similarity=0.294 Sum_probs=161.7
Q ss_pred ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc-------eEEEeeccCCCCCceeEEEEecCCCceEEeee
Q 022590 47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 119 (294)
Q Consensus 47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~ 119 (294)
-.+.+|+++|..++|+|.+...+|+|+.|.+|.||.+..+. .+..+. +|...|--++|+|.-.+.|++++
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~---gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY---GHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe---ecceeEEEEeecccchhhHhhcc
Confidence 45678999999999999999999999999999999987553 344455 79999999999998889999999
Q ss_pred cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCC
Q 022590 120 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ 197 (294)
Q Consensus 120 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~ 197 (294)
.|.+|.+|++.++ .....+. |++.|.+++|+ |.+|++.+.|..||+||.++++
T Consensus 152 ~Dn~v~iWnv~tg-----------------------eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~- 206 (472)
T KOG0303|consen 152 SDNTVSIWNVGTG-----------------------EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT- 206 (472)
T ss_pred CCceEEEEeccCC-----------------------ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-
Confidence 9999999999983 3444445 99999999997 9999999999999999999876
Q ss_pred CCCCCCceeeeeeecCC-CCeeEEEEcccCCcceEEEEc---CCCeEEEEeccCCCc-eeeeeccccccCCCeEEEEEcc
Q 022590 198 SPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGN---REGKIFVWELQSSPP-VLIARLSHAQSKSPIRQTAMSY 272 (294)
Q Consensus 198 ~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~s~ 272 (294)
.+.+-..|. .....+.|-.++ .++.+|. .+..+-+||..+.+. .....+ ...+.|.---|.|
T Consensus 207 --------~v~e~~~heG~k~~Raifl~~g--~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el---DtSnGvl~PFyD~ 273 (472)
T KOG0303|consen 207 --------VVSEGVAHEGAKPARAIFLASG--KIFTTGFSRMSERQIALWDPNNLEEPIALQEL---DTSNGVLLPFYDP 273 (472)
T ss_pred --------EeeecccccCCCcceeEEeccC--ceeeeccccccccceeccCcccccCcceeEEe---ccCCceEEeeecC
Confidence 444444444 234455677777 4555553 577899999887543 233333 3335576667788
Q ss_pred CCCEEEE-eccCCcEEEEecCCC
Q 022590 273 DGSTILS-CCEDGAIWRWDAIPT 294 (294)
Q Consensus 273 ~~~~l~s-~~~dg~i~vw~~~~~ 294 (294)
|.+.+.. |-.|+.|+-|.+..+
T Consensus 274 dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 274 DTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CCCEEEEEecCCcceEEEEecCC
Confidence 8887765 558999999998753
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.92 E-value=2.2e-23 Score=146.50 Aligned_cols=216 Identities=19% Similarity=0.266 Sum_probs=171.6
Q ss_pred Cccc-ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc-cceec-----ccCcceEEEEeCC-CCCceEEEee
Q 022590 2 CYVD-QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFV-----GHGDSINEIRTQP-LKPSLVVSAS 73 (294)
Q Consensus 2 ~~~~-~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-----~h~~~v~~~~~~~-~~~~~l~s~~ 73 (294)
+.|+ ++-+.|.|+.|. |++. .+++-. |..|.+|+++++.. +..+. .|....++-+|+| .+++.+++ .
T Consensus 116 ~~Ldteavg~i~cvew~--Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t 190 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWE--PNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-T 190 (370)
T ss_pred hcCCHHHhCceeeEEEc--CCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-e
Confidence 4566 666799999998 7887 666655 78999999988765 33332 3567788999999 45666665 4
Q ss_pred CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590 74 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 153 (294)
Q Consensus 74 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (294)
.|+++..||+++.++...+.. .|...|..+.|+|+...+|++|+.||.|++||.|..
T Consensus 191 ~d~tl~~~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------------------- 247 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------------------- 247 (370)
T ss_pred CCCcEEEEEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC---------------------
Confidence 579999999999888777765 788999999999988899999999999999999983
Q ss_pred eeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCC--------------------CCCceeeeee
Q 022590 154 VQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPG--------------------EGTADILQKY 210 (294)
Q Consensus 154 ~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~--------------------~~~~~~~~~~ 210 (294)
..|+..+..|...|.++.|+ .+++++++.|..|.+|...+-..... .-....+..+
T Consensus 248 -k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 248 -KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred -CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 67888999999999999997 78999999999999997654321000 0122345678
Q ss_pred ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590 211 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 247 (294)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 247 (294)
..|+..|++++|+.... -.+|+-+.||.+.|=.+..
T Consensus 327 dehEDSVY~~aWSsadP-WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADP-WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccceEEEeeccCCC-eeEEEeccCceEEeecCCh
Confidence 88999999999998775 5778889999998866643
No 166
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-22 Score=143.52 Aligned_cols=222 Identities=15% Similarity=0.207 Sum_probs=163.1
Q ss_pred cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC----ceEEEeeccCCCCCceeEEEEec-CCCceEEeeecCCcE
Q 022590 50 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG----ICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTV 124 (294)
Q Consensus 50 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~~~~~dg~i 124 (294)
.+|.+-|+++.|.+ .|+.+|+|+.|++|+|||.+.. .+....+ .|.+.|..+.|.+ .-|+.+|+++.|+++
T Consensus 10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr---ah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR---AHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEE---ecCCcEEEEEecCccccceEEEEecCCce
Confidence 46889999999999 9999999999999999996543 3444555 6999999999964 457899999999999
Q ss_pred EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCCC
Q 022590 125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPG 200 (294)
Q Consensus 125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~ 200 (294)
.||.-...... .....-.....+......|+.+.|. |-.+++++.||.+|||+.-..-...
T Consensus 86 ~iWEE~~~~~~--------------~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs- 150 (361)
T KOG2445|consen 86 SIWEEQEKSEE--------------AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS- 150 (361)
T ss_pred eeeeecccccc--------------cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc-
Confidence 99986421100 0001123455677788899999996 7789999999999999876543221
Q ss_pred CCCceeeeeee-------cCCCCeeEEEEcccCC-cceEEEEcCC-----CeEEEEeccCCCceeeeeccccccCCCeEE
Q 022590 201 EGTADILQKYP-------VPECDIWFIKFSCDFH-YNAAAIGNRE-----GKIFVWELQSSPPVLIARLSHAQSKSPIRQ 267 (294)
Q Consensus 201 ~~~~~~~~~~~-------~~~~~i~~~~~~~~~~-~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 267 (294)
...+..++. .+..+..++.|+|..- ..+|++|+.+ +.++||................+|..+|++
T Consensus 151 --~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~d 228 (361)
T KOG2445|consen 151 --QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRD 228 (361)
T ss_pred --cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCccee
Confidence 111222222 3445677888887542 2577888766 579999887765444444444489999999
Q ss_pred EEEccCC----CEEEEeccCCcEEEEecCC
Q 022590 268 TAMSYDG----STILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 268 ~~~s~~~----~~l~s~~~dg~i~vw~~~~ 293 (294)
++|.|+- ..||+++.|| |+||+++.
T Consensus 229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred eeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 9999963 4799999999 99999873
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-23 Score=151.89 Aligned_cols=256 Identities=16% Similarity=0.211 Sum_probs=184.9
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC------ccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------EKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESV 78 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i 78 (294)
+|.+.|+++.|+ .+++ +|++|+.|..+++|+++. .+++.... .|...|.|++|.. ...++++|+.+++|
T Consensus 54 ~H~GCiNAlqFS--~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 54 EHTGCINALQFS--HNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhccccceeeec--cCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 899999999998 6787 999999999999999864 34444433 3568999999998 88999999999999
Q ss_pred EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
...|+++.+.+..+... ...+.|+.+..+| -.+.|++.+.++.|.+||.+...... ..
T Consensus 130 I~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~--------------------~~ 187 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANEN-NNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPI--------------------SL 187 (609)
T ss_pred Eeeecccceeeeeeccc-CcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCC--------------------ce
Confidence 99999999998887621 1234899999999 57889999999999999999832111 12
Q ss_pred EEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCC----------CC---------------------CCc
Q 022590 159 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSP----------GE---------------------GTA 204 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~----------~~---------------------~~~ 204 (294)
............+.|+ +.+|++.+..+.+.+||.+...... .. ...
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~ 267 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC 267 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC
Confidence 2223344445556665 6789999999999999998754320 00 000
Q ss_pred eeeee--------eec---C-----CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc------------------
Q 022590 205 DILQK--------YPV---P-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP------------------ 250 (294)
Q Consensus 205 ~~~~~--------~~~---~-----~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------ 250 (294)
.++.. ++. + .+.+.+++|.-+. -+++|+.+-.|++|.+.....
T Consensus 268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~---~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY---TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce---eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 00100 110 0 1234455555553 489999999999999854210
Q ss_pred eeeee-ccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 251 VLIAR-LSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 251 ~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
..... ....+|..-++.+.|+|...+|++.+-.+.+++|.
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 00001 11348889999999999999999999999999995
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=8.5e-23 Score=145.72 Aligned_cols=248 Identities=15% Similarity=0.232 Sum_probs=175.6
Q ss_pred EEEEEeecCCCceEEEEeecCCeEEEEEcCCcc------------ccceec-ccCcceEEEEeC-------CCCCceEEE
Q 022590 12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK------------LHKSFV-GHGDSINEIRTQ-------PLKPSLVVS 71 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~-~h~~~v~~~~~~-------~~~~~~l~s 71 (294)
..+.|+ |||. .|++-+.|..+.+|++...- ....++ .....|...+|- | +..++++
T Consensus 53 kgckWS--PDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~ 128 (406)
T KOG2919|consen 53 KGCKWS--PDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAV 128 (406)
T ss_pred ccceeC--CCCc-eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeee
Confidence 456787 9999 99999999999999985311 011111 123567777775 4 6678999
Q ss_pred eeCCCcEEEEEcCCCceEEEeeccCCCCC---ceeEEEEecCCCceEEeeecCCcEEEEecc-ccccccccceeecCCCC
Q 022590 72 ASKDESVRLWNVQTGICILIFAGAGGHRN---EVLSVDFHPSDIYRIASCGMDNTVKIWSMK-EFWTYVEKSFTWTDLPS 147 (294)
Q Consensus 72 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~ 147 (294)
.+.+.-|++||.-+|+....+... .|.. ...+++|+| ++.+|++|. ...|++||+. .+........
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t------- 198 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT------- 198 (406)
T ss_pred ccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhh-------
Confidence 999999999999999988777643 2433 356899999 888787665 6799999994 3321110000
Q ss_pred CCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590 148 KFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 224 (294)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 224 (294)
......+..+.|.+++|+ ...+++++....+-||.-.... ++..+..|.+.|+.+.|.+
T Consensus 199 ---------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 199 ---------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------PLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred ---------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC---------ceeeecccCCCeeeEEecc
Confidence 000122346677888887 5689999999888888766443 5677778999999999999
Q ss_pred cCCcceEEEEc-CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 225 DFHYNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 225 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+|+ .|++|. .+-.|..||++...........+......-.-....|++++|++|+.||.|++||++.
T Consensus 261 dGn--~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 261 DGN--KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CcC--eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 994 666665 4778999999987533322222333233333456679999999999999999999875
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3e-24 Score=163.34 Aligned_cols=250 Identities=13% Similarity=0.163 Sum_probs=171.6
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC--------ccccceecccCcceEEEEeCCCCCceEEEeeCCC
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE 76 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 76 (294)
.-|.+.|.+++|. |... .|++++.||.|.+|++.. -+++.+|.+|.++|.|++..+ ++..+++|+.||
T Consensus 291 ~s~~d~ir~l~~~--~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 291 RSHDDCIRALAFH--PSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDG 366 (577)
T ss_pred ecchhhhhhhhcC--CCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCc
Confidence 3577788888885 4343 899999999999999932 256778999999999999999 999999999999
Q ss_pred cEEEEEcCCCc----------eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCC
Q 022590 77 SVRLWNVQTGI----------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP 146 (294)
Q Consensus 77 ~i~vwd~~~~~----------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 146 (294)
+|+.|++.... ....+. ||.+.|+.+++++ ....|++++.||+++.|+.......
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~---Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~----------- 431 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLL---GHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPC----------- 431 (577)
T ss_pred eeeeeccCCCCCcccccCcchhcccee---ccccceeeeeecc-cccceeeecCCceEEeeccCCcCcc-----------
Confidence 99999664211 122333 8999999999998 7778999999999999998873210
Q ss_pred CCCCCceeeeceEEeecCCCceeecceec---ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc
Q 022590 147 SKFPTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 223 (294)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 223 (294)
......-.+.-..+.+-. ...++...-+.-.++++............ ..........+..+...
T Consensus 432 -----------~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~--~~~~~~~~~~in~vVs~ 498 (577)
T KOG0642|consen 432 -----------TFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS--ASPGPRRYPQINKVVSH 498 (577)
T ss_pred -----------ccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecccc--CCCcccccCccceEEec
Confidence 000001111122222221 22222222233333333332211000000 00001112456677888
Q ss_pred ccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 224 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 224 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
|.. .+.+++.+|+.|+++|..+++...... .|...++++++.|+|.+|++++.||.+++|.+.
T Consensus 499 ~~~--~~~~~~hed~~Ir~~dn~~~~~l~s~~----a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 499 PTA--DITFTAHEDRSIRFFDNKTGKILHSMV----AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred CCC--CeeEecccCCceecccccccccchhee----eccceecceeecCCCceEEeecCCceeehhhcc
Confidence 887 589999999999999999987433332 677889999999999999999999999999874
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=7.3e-23 Score=146.05 Aligned_cols=241 Identities=17% Similarity=0.289 Sum_probs=181.8
Q ss_pred ccCceeEEEEEee-----cCCCceEEEEeecCCeEEEEEcCCccccceecc--cCcc---eEEEEeCCCCCceEEEeeCC
Q 022590 6 QKEESFYTVSWAC-----NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDS---INEIRTQPLKPSLVVSASKD 75 (294)
Q Consensus 6 ~h~~~v~~~~~~~-----~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--h~~~---v~~~~~~~~~~~~l~s~~~d 75 (294)
+..+.|+..+|-. .|+.. ++|+.+.+.-|++||..+|+....+.+ |.+. -.+++|+| ++..|++|..
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t~-l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGyk- 178 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPSTN-LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGYK- 178 (406)
T ss_pred ccCCEEEEEEeeeccccCCCccc-eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeeccc-
Confidence 4456788888863 46666 999999999999999999998887764 4443 46899999 8888887655
Q ss_pred CcEEEEEc-CCCceEEEe----eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590 76 ESVRLWNV-QTGICILIF----AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 150 (294)
Q Consensus 76 g~i~vwd~-~~~~~~~~~----~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
..|+++|+ +.|.--... ....+..+-|.+++|+|.+...++.|+....+-++.-..
T Consensus 179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~------------------- 239 (406)
T KOG2919|consen 179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG------------------- 239 (406)
T ss_pred ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-------------------
Confidence 78999999 444322111 112245778999999998888999999998888887776
Q ss_pred CceeeeceEEeecCCCceeeccee--cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeecCCC-CeeEEEEcccC
Q 022590 151 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSCDF 226 (294)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 226 (294)
+.|+..+.+|.+.|+.+.|. |+.|++|.. +..|..||+|.... ++..+..|.. .-..+-|.-+.
T Consensus 240 ----~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~--------pv~~L~rhv~~TNQRI~FDld~ 307 (406)
T KOG2919|consen 240 ----RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD--------PVYALERHVGDTNQRILFDLDP 307 (406)
T ss_pred ----CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--------hhhhhhhhccCccceEEEecCC
Confidence 66888899999999999997 889998875 77899999997643 3333333322 33345666666
Q ss_pred CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590 227 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 283 (294)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 283 (294)
++++|++|+.+|.|++||++..-. ....+. .+...++.++++|--.++|+++..
T Consensus 308 ~~~~LasG~tdG~V~vwdlk~~gn-~~sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 308 KGEILASGDTDGSVRVWDLKDLGN-EVSVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCceeeccCCCccEEEEecCCCCC-cccccc--cccccccceecCcccceeeeccCc
Confidence 668999999999999999998322 122222 566789999999998888888654
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=3.8e-22 Score=155.63 Aligned_cols=237 Identities=17% Similarity=0.267 Sum_probs=172.0
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
...|+.++|. |||..++++++ ..+.+||..+|..++++++|.+.|.+++|+. +|..+++|+.|..|.+|+..-..
T Consensus 12 ~hci~d~afk--PDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 12 EHCINDIAFK--PDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred ccchheeEEC--CCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccc
Confidence 3489999998 99984444443 4799999999999999999999999999999 99999999999999999875332
Q ss_pred eEEEeeccCCCCCceeEEEEec--------------------------------------CCCceEEeeecCCcEEEEec
Q 022590 88 CILIFAGAGGHRNEVLSVDFHP--------------------------------------SDIYRIASCGMDNTVKIWSM 129 (294)
Q Consensus 88 ~~~~~~~~~~~~~~v~~l~~~~--------------------------------------~~~~~l~~~~~dg~i~~wd~ 129 (294)
+..+. |.+.|.|+.|+| +++.+|+.|-.||+|.+-+-
T Consensus 87 -~LkYS----H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 87 -ILKYS----HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred -eeeec----cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 22333 666666666666 14555555555555555432
Q ss_pred cccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-------cceEEEeeCCCeEEEecCCCCCCCCCCC
Q 022590 130 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------GDFILSKSVDNEIVLWEPKMKEQSPGEG 202 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 202 (294)
... ....+..-.+...+|.+++|+ .+.+++.....++.+|.+...
T Consensus 162 ~gE---------------------ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~------- 213 (1081)
T KOG1538|consen 162 NGE---------------------EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK------- 213 (1081)
T ss_pred CCC---------------------cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-------
Confidence 210 012233344577889999996 347888888888888887543
Q ss_pred CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc
Q 022590 203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE 282 (294)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 282 (294)
.+.+-..-.-...++.+.++| .+++.|+.|+.+.+|--+.- ..-++. .....|..++..|++++++.|+.
T Consensus 214 ---~Igk~r~L~FdP~CisYf~NG--Ey~LiGGsdk~L~~fTR~Gv---rLGTvg--~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 214 ---QIGKDRALNFDPCCISYFTNG--EYILLGGSDKQLSLFTRDGV---RLGTVG--EQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred ---eecccccCCCCchhheeccCC--cEEEEccCCCceEEEeecCe---EEeecc--ccceeEEEEEEccCCceEEEEEc
Confidence 222222223345578888888 68999999999999865442 333333 34568999999999999999999
Q ss_pred CCcEEEEecC
Q 022590 283 DGAIWRWDAI 292 (294)
Q Consensus 283 dg~i~vw~~~ 292 (294)
||+|-.|++.
T Consensus 284 DGTiACyNl~ 293 (1081)
T KOG1538|consen 284 DGTIACYNLI 293 (1081)
T ss_pred cCeeehhhhH
Confidence 9999988863
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.91 E-value=3.4e-24 Score=170.34 Aligned_cols=255 Identities=17% Similarity=0.369 Sum_probs=191.2
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
|-.|...|+|..|. ..|. ++++|+.|..++||..++..+.....||.+.|+.++.+. +..++++++.|..|++|.+
T Consensus 186 LlgH~naVyca~fD--rtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFD--RTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHhhhhheeeeeec--cccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEec
Confidence 34799999999997 8898 999999999999999999999999999999999999998 7789999999999999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc-cccccccceeecCCCCCCCCceeeece----
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPV---- 158 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 158 (294)
..+.++..+. +|++.|++|+|+| ..+.+.||++++||.+- ..... +.|...........+
T Consensus 262 ~~~~pvsvLr---ghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~-------prp~~~~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 262 PDGAPVSVLR---GHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYV-------PRPLKFTEKDLVDSILFEN 326 (1113)
T ss_pred CCCchHHHHh---ccccceeeeccCc-----cccCCCCCceEeccccccccccC-------CCCCCcccccceeeeeccc
Confidence 9999998888 7999999999999 44888999999999992 11111 111111100000000
Q ss_pred ---------EEeecCCCceeeccee-------------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590 159 ---------FIASVHSNYVDCNRWL-------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 216 (294)
Q Consensus 159 ---------~~~~~~~~~i~~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (294)
.......-.+.+++|. ..+.+++-.+-.+.+|++.++. .......+...
T Consensus 327 ~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---------l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 327 NGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---------LLHNLMGHSDE 397 (1113)
T ss_pred cccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch---------hhhhhcccccc
Confidence 0000001112222222 1234444456678888888765 45566677888
Q ss_pred eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
+..+.++|-.. ....+++.||...|||+-.+.+...... + ...+...+||++|..++....-|.++|...
T Consensus 398 ~yvLd~Hpfn~-ri~msag~dgst~iwdi~eg~pik~y~~---g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 398 VYVLDVHPFNP-RIAMSAGYDGSTIIWDIWEGIPIKHYFI---G-HGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred eeeeeecCCCc-HhhhhccCCCceEeeecccCCcceeeec---c-cceeeccccCCCCceEecCCCCCceEEecc
Confidence 99999999876 6778889999999999999876655553 3 356788999999999998888888888754
No 173
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=7.2e-23 Score=158.68 Aligned_cols=165 Identities=19% Similarity=0.221 Sum_probs=130.5
Q ss_pred CCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---c
Q 022590 99 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---G 175 (294)
Q Consensus 99 ~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 175 (294)
...|+.+.|.|.+...|++++.||.|++|.+..+... .....|...+..|...|+++.|+ .
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~----------------e~~~tPe~~lt~h~eKI~slRfHPLAa 690 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP----------------ENEMTPEKILTIHGEKITSLRFHPLAA 690 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCC----------------cccCCcceeeecccceEEEEEecchhh
Confidence 3458999999999999999999999999999874321 11144667788999999999998 7
Q ss_pred ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeee
Q 022590 176 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 255 (294)
Q Consensus 176 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 255 (294)
+.|++++.|-+|++||+++.. ....+.+|...|..++|+|+| +.+++.+.||.|++|+.++.+... ..
T Consensus 691 dvLa~asyd~Ti~lWDl~~~~---------~~~~l~gHtdqIf~~AWSpdG--r~~AtVcKDg~~rVy~Prs~e~pv-~E 758 (1012)
T KOG1445|consen 691 DVLAVASYDSTIELWDLANAK---------LYSRLVGHTDQIFGIAWSPDG--RRIATVCKDGTLRVYEPRSREQPV-YE 758 (1012)
T ss_pred hHhhhhhccceeeeeehhhhh---------hhheeccCcCceeEEEECCCC--cceeeeecCceEEEeCCCCCCCcc-cc
Confidence 899999999999999999765 567788999999999999999 689999999999999998875322 22
Q ss_pred ccccccCCCeEEEEEccCCCEEEEeccCC----cEEEEecC
Q 022590 256 LSHAQSKSPIRQTAMSYDGSTILSCCEDG----AIWRWDAI 292 (294)
Q Consensus 256 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~vw~~~ 292 (294)
-.. .-...--.+.|.-+|+++++.+.|. .|.+||..
T Consensus 759 g~g-pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 759 GKG-PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CCC-CccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 111 1112334577888999999887765 36666653
No 174
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.2e-22 Score=149.86 Aligned_cols=240 Identities=13% Similarity=0.173 Sum_probs=180.2
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC--ccccceecccCcceEEEEeCCCCCc-eEEEeeCCCcEEEEEcC
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQ 84 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~vwd~~ 84 (294)
.+.|+++.|. |... +|++++.||+++||.++. ...++.+.-...+|.+.+|.| ++. .+++++....+..||+.
T Consensus 213 ~~~I~sv~FH--p~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFH--PTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEec--CCCc-eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeecc
Confidence 4689999996 7776 999999999999998854 345566666678999999999 555 99999999999999998
Q ss_pred CCceEEEeeccCCCC-CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 85 TGICILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
+.+... +..+.++. ..+.....+| ++++|+..+..|.|.+....++. .+..+.
T Consensus 289 ~ak~~k-~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~e-----------------------li~s~K- 342 (514)
T KOG2055|consen 289 TAKVTK-LKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKE-----------------------LITSFK- 342 (514)
T ss_pred cccccc-ccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhh-----------------------hhheee-
Confidence 877544 33333454 3567788899 88899999999999999888732 222222
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC-CeeEEEEcccCCcceEEEEcCCCeE
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSCDFHYNAAAIGNREGKI 240 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~~~dg~i 240 (294)
-++.|..+.|+ +..|++++.+|.|.+||++... ++..+....+ .-++++.++++ .+||+|+..|.|
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~---------~~~rf~D~G~v~gts~~~S~ng--~ylA~GS~~GiV 411 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS---------CLHRFVDDGSVHGTSLCISLNG--SYLATGSDSGIV 411 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc---------eEEEEeecCccceeeeeecCCC--ceEEeccCcceE
Confidence 35677888886 7888888999999999999764 4555544322 23445666666 699999999999
Q ss_pred EEEeccC----CCceeeeeccccccCCCeEEEEEccCCCEEEEecc--CCcEEEEe
Q 022590 241 FVWELQS----SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE--DGAIWRWD 290 (294)
Q Consensus 241 ~i~d~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~vw~ 290 (294)
.|||.++ ..+.++..+. .-...|++|+|+|+++.||.+|. +..+++-.
T Consensus 412 NIYd~~s~~~s~~PkPik~~d--NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH 465 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVD--NLTTAITSLQFNHDAQILAIASRVKKNALRLVH 465 (514)
T ss_pred EEeccchhhccCCCCchhhhh--hhheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence 9999764 3344444444 44467999999999999998874 44566543
No 175
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.2e-22 Score=141.77 Aligned_cols=255 Identities=15% Similarity=0.173 Sum_probs=179.1
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+..|-.+|.+++|+ ++|+ .|++++.|..|.+||+..|.+++.+. ..++|+...|+|.+.+..++.-.+..-.+-++
T Consensus 61 lsaH~~pi~sl~WS--~dgr-~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~ 136 (405)
T KOG1273|consen 61 LSAHVRPITSLCWS--RDGR-KLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDF 136 (405)
T ss_pred hhccccceeEEEec--CCCC-EeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEe
Confidence 45899999999998 9999 99999999999999999999988887 67999999999977777776666666666676
Q ss_pred CCCceEEEeec-cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 84 QTGICILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
..+.....-.. ...-.....+..|.+ .++++++|...|.+.++|..+. ..+..+.
T Consensus 137 s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~-----------------------e~vas~r 192 (405)
T KOG1273|consen 137 SDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETL-----------------------ECVASFR 192 (405)
T ss_pred cCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchh-----------------------eeeeeee
Confidence 54332211111 001112233446787 8999999999999999999983 2233333
Q ss_pred cCC-Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee--cCCCCeeEEEEcccCCcceEEEEc-C
Q 022590 163 VHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGN-R 236 (294)
Q Consensus 163 ~~~-~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~-~ 236 (294)
... ..|..+.++ |+.|+.-+.|+.||.|+++.-..........+.++++ .......+++|+.+| .|+++|+ .
T Consensus 193 its~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg--eYv~a~s~~ 270 (405)
T KOG1273|consen 193 ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG--EYVCAGSAR 270 (405)
T ss_pred echheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc--cEEEecccc
Confidence 333 566666665 9999999999999999987432211111111111111 123345678899988 4665554 4
Q ss_pred CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
...++||.-..+. .+..+. .........+.|+|-...+++- ..|.+++|...
T Consensus 271 aHaLYIWE~~~Gs--LVKILh-G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 271 AHALYIWEKSIGS--LVKILH-GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ceeEEEEecCCcc--eeeeec-CCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 5679999998886 333333 1223567889999999888888 78899999864
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=133.88 Aligned_cols=239 Identities=15% Similarity=0.127 Sum_probs=166.7
Q ss_pred eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----------cccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590 10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 79 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 79 (294)
.|.+-+|+ |.++ +|++|..+|.|.+..+.+. .++-..++|.++|+.++|.. .+|++|+. |.|+
T Consensus 12 tvf~qa~s--p~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~ 84 (325)
T KOG0649|consen 12 TVFAQAIS--PSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVY 84 (325)
T ss_pred HHHHHhhC--Ccce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEE
Confidence 45666777 8888 9999999999999987531 23445589999999999984 57777775 9999
Q ss_pred EEEcCCCce------EEEeeccCCCC-----CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590 80 LWNVQTGIC------ILIFAGAGGHR-----NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 148 (294)
Q Consensus 80 vwd~~~~~~------~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 148 (294)
-|..+.... +.....+ .|. ..|+++...|..+. ++.++.|+.++-||+++
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P-~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~----------------- 145 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIP-MQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLED----------------- 145 (325)
T ss_pred EeeehhhhhhccchhhhhhcCc-cccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecC-----------------
Confidence 997754322 1111111 122 35899999995555 55555799999999999
Q ss_pred CCCceeeeceEEeecCCCceeecce-e-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC-CCCeeEEEEccc
Q 022590 149 FPTKYVQFPVFIASVHSNYVDCNRW-L-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCD 225 (294)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 225 (294)
......+.+|.+.|.++.- + ...+++|+.||++|+||.++.+........+....+..+ ...|.+++.+
T Consensus 146 ------G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-- 217 (325)
T KOG0649|consen 146 ------GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-- 217 (325)
T ss_pred ------CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--
Confidence 4556788999999999987 3 678999999999999999988743222111111111111 2234444443
Q ss_pred CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 226 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 226 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
. .++++|+ ...+.+|.+++.++..+..++ .++..+.|..+ .++++++.+.|.-|.+.
T Consensus 218 e--dWlvCGg-Gp~lslwhLrsse~t~vfpip-----a~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 218 E--DWLVCGG-GPKLSLWHLRSSESTCVFPIP-----ARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred C--ceEEecC-CCceeEEeccCCCceEEEecc-----cceeEeeeecc--eEEEeccccceeeeeec
Confidence 3 4777776 456999999999877777665 45777888654 67777777777777653
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.89 E-value=2e-19 Score=130.72 Aligned_cols=240 Identities=15% Similarity=0.165 Sum_probs=176.7
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC--cEEEEEc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNV 83 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~ 83 (294)
+....++.+.|+ .+.. .|..|+.|| .++|+.+..............|--+-|+. .++|..+.+. .+++.++
T Consensus 3 ~~~~ti~~~~~N--qd~~-~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~ 75 (391)
T KOG2110|consen 3 GKKPTINFIGFN--QDST-LLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHF 75 (391)
T ss_pred CCCcceeeeeec--ccee-EEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEc
Confidence 345567777775 7777 888899887 68888765444322232334566677765 5666655543 4999999
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
+.+..+..+. ...+|.++.++. +.|+++-.+ .|+|||++..+.. ..+.....
T Consensus 76 Kk~~~ICe~~----fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklL--------------------hTI~t~~~ 127 (391)
T KOG2110|consen 76 KKKTTICEIF----FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLL--------------------HTIETTPP 127 (391)
T ss_pred ccCceEEEEe----cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceee--------------------hhhhccCC
Confidence 9988888877 778899999964 446665544 4999999984321 11223334
Q ss_pred CCCceeeccee--cceEEEe--eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590 164 HSNYVDCNRWL--GDFILSK--SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 239 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 239 (294)
+...+.+++++ +.+++-- ...|.|.+||..+.+ ....+..|++.+.+++|+++| .+||++++.|+
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~---------~v~~I~aH~~~lAalafs~~G--~llATASeKGT 196 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ---------PVNTINAHKGPLAALAFSPDG--TLLATASEKGT 196 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcccce---------eeeEEEecCCceeEEEECCCC--CEEEEeccCce
Confidence 55667777776 4466653 346899999998654 678888999999999999999 69999999997
Q ss_pred -EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 240 -IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 240 -i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
||+|.+.+++.....+.. -....|.+++|+|++++|++.|..++|+||.++.
T Consensus 197 VIRVf~v~~G~kl~eFRRG--~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 197 VIRVFSVPEGQKLYEFRRG--TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEEEcCCccEeeeeeCC--ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 789999998855444433 2246799999999999999999999999999864
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=2.4e-19 Score=144.34 Aligned_cols=244 Identities=30% Similarity=0.517 Sum_probs=189.8
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-ccceecccCc-ceEEEEe-CCCCCc-eEEEeeC-CCcE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGD-SINEIRT-QPLKPS-LVVSASK-DESV 78 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~h~~-~v~~~~~-~~~~~~-~l~s~~~-dg~i 78 (294)
+..|...+.++.+. +.+. .++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .+ +.. .++..+. |+.+
T Consensus 61 ~~~~~~~i~~~~~~--~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFS--PDGE-LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP-DGNSILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEEC--CCCc-EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC-CcceEEeccCCCCccE
Confidence 34788899999997 7787 88888899999999998876 6666666443 7777777 77 554 5555444 9999
Q ss_pred EEEEcCC-CceEEEeeccCCCCCceeEEEEecCCCceEEeeec-CCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590 79 RLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 156 (294)
Q Consensus 79 ~vwd~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
.+|+... ......+. .|...|..++|+| ++..+++++. |+.+++|++.. ..
T Consensus 137 ~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------------~~ 189 (466)
T COG2319 137 KLWDLSTPGKLIRTLE---GHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRT-----------------------GK 189 (466)
T ss_pred EEEEecCCCeEEEEEe---cCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCC-----------------------Cc
Confidence 9999987 66667676 6999999999999 7777888875 99999999997 33
Q ss_pred ceEEeecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeee-eeecCCCCeeEEEEcccCCcceEE
Q 022590 157 PVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQ-KYPVPECDIWFIKFSCDFHYNAAA 232 (294)
Q Consensus 157 ~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~ 232 (294)
....+..|...+.++.|. +. .+++++.|+.|++||.+.+. .+. .+..+.... ...|+|++ .+++
T Consensus 190 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~-~~~~~~~~--~~~~ 257 (466)
T COG2319 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK---------LLRSTLSGHSDSV-VSSFSPDG--SLLA 257 (466)
T ss_pred eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc---------EEeeecCCCCcce-eEeECCCC--CEEE
Confidence 455666699999999997 44 45555899999999877443 333 455555543 33899998 5788
Q ss_pred EEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 233 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+++.++.+++|++..... ..... ..|...+.++.|+|++..+++++.|+.+.+|++..
T Consensus 258 ~~~~d~~~~~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSS-LLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315 (466)
T ss_pred EecCCCcEEEeeecCCCc-EEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence 999999999999998764 12222 36678999999999989999899998899998764
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=147.68 Aligned_cols=231 Identities=15% Similarity=0.158 Sum_probs=166.8
Q ss_pred ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCc
Q 022590 45 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNT 123 (294)
Q Consensus 45 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~ 123 (294)
+.+.+.+|++.|+++.|+. +|.+|++|+.|-.+.|||.-..+.+..+.. +|...|.+++|-|. +..++++|..|..
T Consensus 42 lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--gHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIST--GHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeec--ccccceeEEeeeccCCCeEEEeccCcce
Confidence 4467889999999999999 999999999999999999998888888887 89999999999994 4577899999999
Q ss_pred EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCC
Q 022590 124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPG 200 (294)
Q Consensus 124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~ 200 (294)
|+++|+...+.... ......+......|...|..++.. ++.+.+++.||+|+-||++....-..
T Consensus 119 i~lfdl~~~~~~~~-------------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGM-------------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred EEEEeccccccccc-------------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 99999986321110 111134455667788888877764 57999999999999999998653222
Q ss_pred CC-CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce----------------eeeeccccccC-
Q 022590 201 EG-TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV----------------LIARLSHAQSK- 262 (294)
Q Consensus 201 ~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------~~~~~~~~~~~- 262 (294)
.. ....+..+...--...++.++|... .+|++|+.|-..++||.+...+. .+..+. .+|.
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-p~hlk 263 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-PGHLK 263 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec-Ccccc
Confidence 21 1112222222234567889999886 69999999999999995321100 111111 0111
Q ss_pred ----------CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 263 ----------SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 263 ----------~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
..++-+.|+|+|.-|+..-....|+++|+..
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 1256788999997666654555799999853
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.4e-20 Score=152.30 Aligned_cols=255 Identities=15% Similarity=0.153 Sum_probs=178.0
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-----cccceec-------ccCcceEEEEeCCCCCceEEEeeCC
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----KLHKSFV-------GHGDSINEIRTQPLKPSLVVSASKD 75 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~~~-------~h~~~v~~~~~~~~~~~~l~s~~~d 75 (294)
...|+.+.+--..|.. ++++++.||.|+||+--.. +.+..+. +..+.=.-+.|....+.++++| .-
T Consensus 1109 ~t~Vs~l~liNe~D~a-LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~ 1186 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDA-LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DV 1186 (1387)
T ss_pred CCccceeeeecccchh-heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-Ce
Confidence 4578888887555555 9999999999999974322 2222221 1111124467877455555554 46
Q ss_pred CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590 76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 155 (294)
Q Consensus 76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (294)
..|+|||.........+.. +....|+++.-+-..++++++|..||.+++||.|.... .
T Consensus 1187 r~IRIWDa~~E~~~~diP~--~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~--------------------d 1244 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPY--GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP--------------------D 1244 (1387)
T ss_pred eEEEEEecccceeEeeccc--CCCccceeecccccCCceEEEeecCCceEEeecccCCc--------------------c
Confidence 8999999988877776654 46667888877665689999999999999999997321 2
Q ss_pred eceEEeecCCCc--eeeccee--c-ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590 156 FPVFIASVHSNY--VDCNRWL--G-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 230 (294)
Q Consensus 156 ~~~~~~~~~~~~--i~~~~~~--~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 230 (294)
..+.....|... |..+.+. | ..|++|+.+|.|++||+|...... ......... -....+++..++.. ..
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---~~~iv~~~~-yGs~lTal~VH~ha--pi 1318 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---FLTIVAHWE-YGSALTALTVHEHA--PI 1318 (1387)
T ss_pred ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc---cceeeeccc-cCccceeeeeccCC--Ce
Confidence 345666777776 8877775 2 269999999999999999852110 111111111 12248889999888 68
Q ss_pred EEEEcCCCeEEEEeccCCCceeeeecc--ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 231 AAIGNREGKIFVWELQSSPPVLIARLS--HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 231 l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+|+|+. +.|+||++...+........ .....+.+.+++|+|...+||+|+.|..|.||....
T Consensus 1319 iAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred eeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 999988 99999999876532222221 223446789999999999999999999999997654
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=135.21 Aligned_cols=194 Identities=19% Similarity=0.216 Sum_probs=147.7
Q ss_pred ceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590 67 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 145 (294)
Q Consensus 67 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 145 (294)
..+|++-..|.|++||..+++.+..|+ ++...++.+.|... .++.+.+|+.||+|++||+|....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk---~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e----------- 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK---GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE----------- 106 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec---CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-----------
Confidence 468888889999999999999999998 68888899999763 568899999999999999998542
Q ss_pred CCCCCCceeeeceEEeecCC-Cceeeccee--cceEEEeeC----CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCee
Q 022590 146 PSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 218 (294)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (294)
.+......++ .+..+++-+ ++.+++|.. +-.+.+||+|..++. .-.-...|...|+
T Consensus 107 ----------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-------l~~~~eSH~DDVT 169 (376)
T KOG1188|consen 107 ----------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-------LRQLNESHNDDVT 169 (376)
T ss_pred ----------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch-------hhhhhhhccCcce
Confidence 2233334444 455555553 566666653 567999999987641 2233456889999
Q ss_pred EEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecCC
Q 022590 219 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~ 293 (294)
.+.|+|... ++|++|+.||.|.+||++.... .-..+.-..+...|..+.|..++ +.|.+-+..+...+|+++.
T Consensus 170 ~lrFHP~~p-nlLlSGSvDGLvnlfD~~~d~E-eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 170 QLRFHPSDP-NLLLSGSVDGLVNLFDTKKDNE-EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred eEEecCCCC-CeEEeecccceEEeeecCCCcc-hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 999999986 8999999999999999987632 11122222555779999999877 4588888999999999864
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=2.4e-18 Score=138.58 Aligned_cols=244 Identities=27% Similarity=0.461 Sum_probs=182.2
Q ss_pred ceeEEEEEeecCCCceEEEE-eecCCeEEEEEcCC-ccccceecccCcceEEEEeCCCCCceEEEeeC-CCcEEEEEcCC
Q 022590 9 ESFYTVSWACNVDGIPFLVA-GGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWNVQT 85 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~ 85 (294)
..+..+.+. .+++..+++. +..|+.+.+|+... ......+..|...|..++|+| ++..+++++. |+.+++|+...
T Consensus 110 ~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 110 SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCC
Confidence 367778876 6777634444 34499999999988 778888899999999999999 7778888885 99999999998
Q ss_pred CceEEEeeccCCCCCceeEEEEecCCCc-eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE-Eeec
Q 022590 86 GICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASV 163 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 163 (294)
+..+..+. +|...|.+++|+| ++. .+++++.|+.+++||.... .... .+..
T Consensus 188 ~~~~~~~~---~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~-----------------------~~~~~~~~~ 240 (466)
T COG2319 188 GKPLSTLA---GHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTG-----------------------KLLRSTLSG 240 (466)
T ss_pred CceEEeec---cCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCC-----------------------cEEeeecCC
Confidence 88888877 5999999999998 665 5666699999999977741 1222 4555
Q ss_pred CCCce-eecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 164 HSNYV-DCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 164 ~~~~i-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
|.... ......+..+++++.|+.+++|+.+.... .+.....|...+..+.|.|++ ..+++++.|+.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~d~~~~~ 310 (466)
T COG2319 241 HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG--KLLASGSSDGTVRL 310 (466)
T ss_pred CCcceeEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC--CEEEEeeCCCcEEE
Confidence 66553 32222366888999999999999987652 222235567889999999966 46666888899999
Q ss_pred EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe-ccCCcEEEEecCC
Q 022590 243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRWDAIP 293 (294)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vw~~~~ 293 (294)
|+........... ...|...+..+.|.+++..++.+ ..|+.+.+|++..
T Consensus 311 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 311 WDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred EEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence 9888775433333 22455579999994333556655 6889999998764
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=9.3e-20 Score=144.90 Aligned_cols=241 Identities=13% Similarity=0.146 Sum_probs=163.6
Q ss_pred CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce--EEEee-ccCCCCCceeEEEEec
Q 022590 33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC--ILIFA-GAGGHRNEVLSVDFHP 109 (294)
Q Consensus 33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~-~~~~~~~~v~~l~~~~ 109 (294)
+.+.||++.........-.-..+|+++.|+|.+..+++.|..+|.|.+||++.+.. ...+. ....|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999999876333333335689999999999999999999999999999987655 22111 1226899999999976
Q ss_pred CCCc--eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCC
Q 022590 110 SDIY--RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVD 184 (294)
Q Consensus 110 ~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d 184 (294)
+.. -|++++.||.|..|+++......+...... .............++++.|. .+.|++|+.+
T Consensus 302 -~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~-----------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~ 369 (555)
T KOG1587|consen 302 -NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES-----------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE 369 (555)
T ss_pred -cCCCCceEEEecCCcEeeeeccccccchhhccccc-----------ccccccccccccceeeEeeccCCCceEEEEcCC
Confidence 443 489999999999999887433221111000 00000111223456677774 7789999999
Q ss_pred CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc-CCCceeeeeccccccCC
Q 022590 185 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLSHAQSKS 263 (294)
Q Consensus 185 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~ 263 (294)
|.|.-=+-....... .........+..|.++++.+.++|-.. ..+++++ |..++||... ...+. ..+. .+..
T Consensus 370 G~v~~~~r~g~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl--~~~~--~~~~ 442 (555)
T KOG1587|consen 370 GKVYKGCRKGYTPAP-EVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPL--LSLD--SSPD 442 (555)
T ss_pred cEEEEEeccCCcccc-cccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcc--hhhh--hccc
Confidence 998773332222111 012233456677889999999999986 3444444 9999999988 44322 2222 4446
Q ss_pred CeEEEEEccCC-CEEEEeccCCcEEEEecC
Q 022590 264 PIRQTAMSYDG-STILSCCEDGAIWRWDAI 292 (294)
Q Consensus 264 ~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~ 292 (294)
.|++++|||.. ..++++..||.|.+||+.
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 69999999976 467788899999999985
No 184
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.5e-21 Score=144.53 Aligned_cols=232 Identities=13% Similarity=0.181 Sum_probs=159.7
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee-cccCcceEEEEeCCC-CCceEEEeeCCCcEEEE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPL-KPSLVVSASKDESVRLW 81 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vw 81 (294)
|.+|++.|+|++|+ .+|. +|++|+.|-.+.|||....+++..+ .+|...|.++.|-|. +..++++|..|..|+++
T Consensus 46 L~GH~GCVN~LeWn--~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWN--ADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hccccceecceeec--CCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 56899999999998 8999 9999999999999999888877766 589999999999985 35688999999999999
Q ss_pred EcCCC----------ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590 82 NVQTG----------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 151 (294)
Q Consensus 82 d~~~~----------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
|+... +....+. .|...|..|+..|.+++.+.+++.||+|+-+|++.........
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~---cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~------------ 187 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWS---CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE------------ 187 (758)
T ss_pred ecccccccccccCccchhhhhh---hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc------------
Confidence 99742 2233333 6999999999999667999999999999999999832111000
Q ss_pred ceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCC-CC--------CCCceeeeeee-cC-----
Q 022590 152 KYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQS-PG--------EGTADILQKYP-VP----- 213 (294)
Q Consensus 152 ~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~-~~--------~~~~~~~~~~~-~~----- 213 (294)
............--...++..+ ..+|++|+.|-..++||.+..... .. .....+++.+. .|
T Consensus 188 -~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 188 -DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ 266 (758)
T ss_pred -cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence 0000000111111233444444 679999999999999995533211 10 00011111111 11
Q ss_pred ------CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeec
Q 022590 214 ------ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 256 (294)
Q Consensus 214 ------~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (294)
...++.+.|+|+|. -|++.-..-.|+++|+...+......+
T Consensus 267 gn~~~~~~~~t~vtfnpNGt--ElLvs~~gEhVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFNPNGT--ELLVSWGGEHVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred cccccceeeeEEEEECCCCc--EEEEeeCCeEEEEEeecCCCCceeecC
Confidence 11256789999995 444444455799999988775444433
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.9e-19 Score=142.48 Aligned_cols=273 Identities=16% Similarity=0.195 Sum_probs=173.0
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC----ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 81 (294)
.|...+++.+++ |+++ ++|+|..||.|.+|.--. ......+.-|..+|++++|++ +|.+|++|+.+|.+.+|
T Consensus 203 ~Htf~~t~~~~s--pn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 203 HHTFNITCVALS--PNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhcccceeEEec--cccc-eEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-CCceEeecccceEEEEE
Confidence 566677888886 9999 999999999999997432 233456778999999999999 99999999999999999
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc-eeec-----CCCCCCCCceee
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-FTWT-----DLPSKFPTKYVQ 155 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~ 155 (294)
.+.+++ .+.+. .-.++|..+.++| ++.+.+....|+.|.+....+........ +... ..+........-
T Consensus 279 q~~T~~-kqfLP---RLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 279 QLETGK-KQFLP---RLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred eecCCC-ccccc---ccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 999998 33344 3778999999999 88888888899999998876532211110 0000 000000000000
Q ss_pred ---eceEEeecCCC--------------------------------ceeeccee--cceEEEeeC--------CC--eEE
Q 022590 156 ---FPVFIASVHSN--------------------------------YVDCNRWL--GDFILSKSV--------DN--EIV 188 (294)
Q Consensus 156 ---~~~~~~~~~~~--------------------------------~i~~~~~~--~~~l~~~~~--------d~--~i~ 188 (294)
.....+.+|++ .++.+..+ |+++++.-. || .++
T Consensus 354 dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 354 DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence 00011111111 12222222 445554421 22 356
Q ss_pred EecCCCCCCCCCCCCceeeeee-ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC------ceeeeecccccc
Q 022590 189 LWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP------PVLIARLSHAQS 261 (294)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~ 261 (294)
+|-...... ...+.... ..|+......++.+..+....++++.||.+++|-+...+ ..........-|
T Consensus 434 FW~~n~~~k-----t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 434 FWQYNPNSK-----TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred EEEEcCCcc-----eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 665544332 22222222 234444555555555443588999999999999994432 122222222246
Q ss_pred CCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
..++++++|+.||..|+ .+.|+.|.+||..+
T Consensus 509 k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 509 KTPITALCFSQDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred cCcccchhhcCCCcEEE-EecCCEEEEecCCC
Confidence 78999999999996555 45788999999875
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=2.6e-19 Score=146.45 Aligned_cols=247 Identities=16% Similarity=0.189 Sum_probs=171.4
Q ss_pred EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc---CcceEEEEeCC-CCCceEEEeeCCCcEEEEEcCC--
Q 022590 12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH---GDSINEIRTQP-LKPSLVVSASKDESVRLWNVQT-- 85 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h---~~~v~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~-- 85 (294)
..+.|. |-.. .++++...-.|+|||.+.++....|..+ ...|+.+.+-. ++..++++|+.||.|+||+-..
T Consensus 1068 k~~~~h--pf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1068 KTLKFH--PFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred ceeeec--CCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 344554 6555 7888887779999999999887777543 35688888754 3566899999999999997432
Q ss_pred ---CceEEEeeccCCC----CCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 86 ---GICILIFAGAGGH----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 86 ---~~~~~~~~~~~~~----~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
.+.+..+..+.++ .+.=.-+.|....|. |+++|.-..|+|||....... .
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~----------------------~ 1201 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVV----------------------A 1201 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeE----------------------e
Confidence 2333333322111 111144567764555 555555789999999873211 1
Q ss_pred EEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC--eeEEEEcccCCcceEEE
Q 022590 159 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD--IWFIKFSCDFHYNAAAI 233 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~~ 233 (294)
....+....+++++-+ |+.+++|..||.+++||.|.... ...+.....|... |..+.+.+.|- ..|++
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~-~elvS 1274 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGL-GELVS 1274 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCC-cceee
Confidence 1112234456666554 89999999999999999997653 2355666666655 99999999886 37999
Q ss_pred EcCCCeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 234 GNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
|+.+|.|++||++........... +..-.+..+++..+++...+|+|+. +.|+||++.
T Consensus 1275 gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 999999999999985322222222 1112235999999999999999998 999999985
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=2e-20 Score=142.41 Aligned_cols=204 Identities=15% Similarity=0.232 Sum_probs=161.9
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 104 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 104 (294)
.++.++.||.+.+.+ ..++..+.+.+|.+++.+-.|+| +|.-|++++.||.|++|.- +|-....+. ....+|+|
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~---Q~~~~v~c 150 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVV---QNEESIRC 150 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHh---hcCceeEE
Confidence 688889999999988 56788888999999999999999 9999999999999999985 555444444 36778999
Q ss_pred EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee
Q 022590 105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 182 (294)
Q Consensus 105 l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 182 (294)
++|.|+.++.+++.+ +.+.+=.+.. ...+.....|.+-|.++.|+ .+++++|+
T Consensus 151 ~~W~p~S~~vl~c~g--~h~~IKpL~~-----------------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQG--GHISIKPLAA-----------------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred EEECCCCCceEEecC--CeEEEeeccc-----------------------ccceeEEeccCcEEEEeecCccccceeecC
Confidence 999997777666655 4566555554 44567889999999999998 88999999
Q ss_pred CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccC
Q 022590 183 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK 262 (294)
Q Consensus 183 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 262 (294)
.|-..++||-... .+..-..|+.+|++++|.|+. .++.++. +.++ +. ....
T Consensus 206 ED~kfKvWD~~G~----------~Lf~S~~~ey~ITSva~npd~---~~~v~S~-nt~R--------------~~-~p~~ 256 (737)
T KOG1524|consen 206 EDFRFKIWDAQGA----------NLFTSAAEEYAITSVAFNPEK---DYLLWSY-NTAR--------------FS-SPRV 256 (737)
T ss_pred CceeEEeecccCc----------ccccCChhccceeeeeecccc---ceeeeee-eeee--------------ec-CCCc
Confidence 9999999998643 455566788899999999994 3444442 2333 11 1334
Q ss_pred CCeEEEEEccCCCEEEEeccCCcEEE
Q 022590 263 SPIRQTAMSYDGSTILSCCEDGAIWR 288 (294)
Q Consensus 263 ~~v~~~~~s~~~~~l~s~~~dg~i~v 288 (294)
+.|..++||+||..++.|...|.+.+
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEE
Confidence 67999999999999999999997654
No 188
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.2e-20 Score=140.97 Aligned_cols=225 Identities=16% Similarity=0.243 Sum_probs=160.7
Q ss_pred ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590 47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126 (294)
Q Consensus 47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~ 126 (294)
..+.+|++.|.+|...| .+..|++|+.||+|+||.+.+|.++..+. ..+.|.|++|+|....-++++..+..+.+
T Consensus 394 lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 45689999999999999 99999999999999999999999999998 77899999999955444555555555666
Q ss_pred Eeccccccccc----cceeecCCCCC----------CCCceeeeceEEeecCCCceeeccee--cceEEEeeCC---CeE
Q 022590 127 WSMKEFWTYVE----KSFTWTDLPSK----------FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEI 187 (294)
Q Consensus 127 wd~~~~~~~~~----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i 187 (294)
.+..-+..... ..+........ .........+.....|...|..+.|+ |+||++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 55543311111 00000000000 00111222355667799999999998 9999987664 468
Q ss_pred EEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEE
Q 022590 188 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ 267 (294)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 267 (294)
.|+++..... ...+....+.+..+.|+|... +|++++ ...|++||+...+ .+.++. .....|..
T Consensus 549 liHQLSK~~s---------Q~PF~kskG~vq~v~FHPs~p--~lfVaT-q~~vRiYdL~kqe--lvKkL~--tg~kwiS~ 612 (733)
T KOG0650|consen 549 LIHQLSKRKS---------QSPFRKSKGLVQRVKFHPSKP--YLFVAT-QRSVRIYDLSKQE--LVKKLL--TGSKWISS 612 (733)
T ss_pred EEEecccccc---------cCchhhcCCceeEEEecCCCc--eEEEEe-ccceEEEehhHHH--HHHHHh--cCCeeeee
Confidence 9999876542 223334456788999999984 565554 4679999998854 333333 33467999
Q ss_pred EEEccCCCEEEEeccCCcEEEEecC
Q 022590 268 TAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 268 ~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
++.+|.|.-|+.|+.|+.+..+|+.
T Consensus 613 msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcc
Confidence 9999999999999999999999985
No 189
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.6e-21 Score=143.11 Aligned_cols=260 Identities=14% Similarity=0.170 Sum_probs=187.1
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee-cccCcceEEEEeCCCC-CceEEEeeCCCcEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLK-PSLVVSASKDESVRL 80 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~l~s~~~dg~i~v 80 (294)
.|+.|.+.|+.+.|. ..|. .|++|+.|..|.+||...++....+ .+|...|..-.|.|+. ..-+++++.||.+++
T Consensus 137 kL~~H~GcVntV~FN--~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFN--QRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred cccCCCCccceeeec--ccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 467999999999998 8898 9999999999999999988877666 4799999999998863 457899999999999
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
=.+.........+....|.++|..++.-|....-|.+++.|+.+.-+|++........ ..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~--------------------~c 273 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF--------------------VC 273 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee--------------------ee
Confidence 8776544444333344699999999999988899999999999999999984321111 11
Q ss_pred eecCCC---ceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCC------c------------------------
Q 022590 161 ASVHSN---YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGT------A------------------------ 204 (294)
Q Consensus 161 ~~~~~~---~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~------------------------ 204 (294)
...+.. ....++.+ .+.+++++.|..+++||.+.-........ .
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 112222 23333333 56899999999999999886533211000 0
Q ss_pred ---------------------------eeeee-eecCC--CCeeEEEE-cccCCcceEEEEcCCCeEEEEeccCCCceee
Q 022590 205 ---------------------------DILQK-YPVPE--CDIWFIKF-SCDFHYNAAAIGNREGKIFVWELQSSPPVLI 253 (294)
Q Consensus 205 ---------------------------~~~~~-~~~~~--~~i~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 253 (294)
..... +++|. ..|..+.| -|.. .|+++|+.-|.|.||+-.+++.+.
T Consensus 354 SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs--EyVvSGSDCGhIFiW~K~t~eii~- 430 (559)
T KOG1334|consen 354 SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS--EYVVSGSDCGHIFIWDKKTGEIIR- 430 (559)
T ss_pred eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc--ceEEecCccceEEEEecchhHHHH-
Confidence 00000 12221 11222222 2333 689999999999999998886433
Q ss_pred eeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 254 ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 254 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
.+. +...-|+|+.=+|--..||+++-|..|+||--
T Consensus 431 -~Me--gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 431 -FME--GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred -Hhh--cccceEeccCCCCCCchhhccCCccceeeecC
Confidence 333 33448999999999999999999999999965
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.1e-20 Score=134.84 Aligned_cols=207 Identities=19% Similarity=0.201 Sum_probs=144.1
Q ss_pred EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590 12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 91 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 91 (294)
.+++|+ ++|. .+++|+.||.+|||+......+.....|.+.|.+|.|+| ++++|++-+.| ..+||+.+++..+..
T Consensus 148 k~vaf~--~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFN--GDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEc--CCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhh
Confidence 456665 8888 999999999999999988888888889999999999999 99999999999 899999999966655
Q ss_pred eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec
Q 022590 92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 171 (294)
Q Consensus 92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 171 (294)
... ..-......+.|+. ++ .. -.+++......
T Consensus 223 ~t~-~~k~~~~~~cRF~~-d~------~~-~~l~laa~~~~--------------------------------------- 254 (398)
T KOG0771|consen 223 KTP-FSKDEMFSSCRFSV-DN------AQ-ETLRLAASQFP--------------------------------------- 254 (398)
T ss_pred cCC-cccchhhhhceecc-cC------CC-ceEEEEEecCC---------------------------------------
Confidence 442 12233345555554 32 00 12333322220
Q ss_pred ceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce
Q 022590 172 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 251 (294)
Q Consensus 172 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 251 (294)
+..+.. ..+.+|+-..-- ...+.......|.+++.+++| .+++.|+.||.|.+++..+.+..
T Consensus 255 ---~~~v~~----~~~~~w~~~~~l---------~~~~~~~~~~siSsl~VS~dG--kf~AlGT~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 255 ---GGGVRL----CDISLWSGSNFL---------RLRKKIKRFKSISSLAVSDDG--KFLALGTMDGSVAIYDAKSLQRL 316 (398)
T ss_pred ---CCceeE----EEeeeecccccc---------chhhhhhccCcceeEEEcCCC--cEEEEeccCCcEEEEEeceeeee
Confidence 000000 112233321000 011111223468899999999 69999999999999999887533
Q ss_pred eeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 252 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
.. ....|...|+.+.|+|+.+++++.+.|..+.|..+.
T Consensus 317 ~~---vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 317 QY---VKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred Ee---ehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 32 233777899999999999999999999888877653
No 191
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=6.1e-19 Score=129.14 Aligned_cols=253 Identities=14% Similarity=0.183 Sum_probs=184.9
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce------ecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS------FVGHGDSINEIRTQPLKPSLVVSASKDESVR 79 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 79 (294)
+....|..++|...+..+ .+...+.+..+......+...... .....++|..++... ..|++|-.+|.+.
T Consensus 53 ~~~~ris~l~~~~d~~te-vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~ 128 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETE-VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQ 128 (412)
T ss_pred chhhhhhhheeecCCcee-EeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEE
Confidence 456788999998555555 444444777777777766554433 344567788887764 4688889999999
Q ss_pred EEEcCCCc----eEEEeeccCCCCCceeEEEEecCCCceEEeeecC--CcEEEEeccccccccccceeecCCCCCCCCce
Q 022590 80 LWNVQTGI----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD--NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 153 (294)
Q Consensus 80 vwd~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (294)
+|....+. .+..+. ....+..+.-++....++++|+.. ..+.+||+.+..+..+ -...+. ....
T Consensus 129 ~~~~k~~d~hss~l~~la----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~----aKNvpn--D~L~ 198 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLA----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS----AKNVPN--DRLG 198 (412)
T ss_pred EEeccCCccccccceeee----cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeee----ccCCCC--cccc
Confidence 99987443 233333 335678888888778888889999 8999999998422111 111110 0000
Q ss_pred eeeceEEeecCCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590 154 VQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 229 (294)
Q Consensus 154 ~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (294)
.. -+-+++.+.|- ...|++++.-+.+++||.+.+.. ++..+...+.++.++...|++ +
T Consensus 199 Lr--------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--------PV~~fd~~E~~is~~~l~p~g--n 260 (412)
T KOG3881|consen 199 LR--------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR--------PVAQFDFLENPISSTGLTPSG--N 260 (412)
T ss_pred ce--------eeeeeccceecCCCCCceEEEEecceeEEEecCcccCc--------ceeEeccccCcceeeeecCCC--c
Confidence 01 12345566663 46899999999999999997654 677778888999999999999 6
Q ss_pred eEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 230 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
++++|...|.+..||++.++. ....+. +..+.|+++..+|.+++||++|-|..|||+|+++
T Consensus 261 ~Iy~gn~~g~l~~FD~r~~kl-~g~~~k--g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 261 FIYTGNTKGQLAKFDLRGGKL-LGCGLK--GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EEEEecccchhheecccCcee-eccccC--CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 899999999999999999852 222233 6678999999999999999999999999999986
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=9.6e-19 Score=124.98 Aligned_cols=236 Identities=11% Similarity=0.159 Sum_probs=172.6
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc---ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
-.++|+|.+|+ +|+. .+|.+..+..|.||.....+ ..++++.|...|+.+.|+| ..+.|++|+.|..-.+|..
T Consensus 9 ~~~pitchAwn--~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHAWN--SDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeeeec--CCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCcccccc
Confidence 35799999998 8888 89999999999999986654 6778899999999999999 8889999999999999998
Q ss_pred CCC-c--eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 84 QTG-I--CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 84 ~~~-~--~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
..+ + +...+. .++..++++.|+| .++.|++|+.-..|.||-++....- -.....
T Consensus 85 ~~~~~WkptlvLl---RiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdW-------------------WVsKhi 141 (361)
T KOG1523|consen 85 PSGGTWKPTLVLL---RINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDW-------------------WVSKHI 141 (361)
T ss_pred CCCCeeccceeEE---EeccceeeEeecC-cCceEEeccCccEEEEEEEecccce-------------------ehhhhh
Confidence 443 2 222233 4889999999999 8889999999999999988862211 111223
Q ss_pred eecCCCceeeccee--cceEEEeeCCCeEEEecCCCC-----CCCCC----CCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590 161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK-----EQSPG----EGTADILQKYPVPECDIWFIKFSCDFHYN 229 (294)
Q Consensus 161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~-----~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (294)
...+...|.+++|+ +-++++|+.|+..++|..--. ..... .....++.++....+.+..+.|+|+| .
T Consensus 142 kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG--~ 219 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG--N 219 (361)
T ss_pred CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC--C
Confidence 34467788899997 557888999999999864221 11100 01112333444556789999999999 6
Q ss_pred eEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590 230 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 274 (294)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (294)
.|+-.+.|+.+.+-|.....+. ..... ...-|..++.|-.+.
T Consensus 220 ~lawv~Hds~v~~~da~~p~~~-v~~~~--~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPSER-VQSVA--TAQLPLLSVSWISEN 261 (361)
T ss_pred EeeEecCCCceEEeecCCCchh-ccchh--hccCCceeeEeecCC
Confidence 8998999999999998776421 11221 112567777776443
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=2.5e-17 Score=127.62 Aligned_cols=252 Identities=12% Similarity=0.084 Sum_probs=150.5
Q ss_pred ceeEEEEEeecCCCceEEEEe-ecCCeEEEEEcCC-ccc--cceecccCcceEEEEeCCCCCceEEEee-CCCcEEEEEc
Q 022590 9 ESFYTVSWACNVDGIPFLVAG-GINGIIRVIDVSN-EKL--HKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNV 83 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~ 83 (294)
+....++++ |+++ +|+++ ..++.|.+|+++. ++. ..... .......++++| ++++|++++ .++.|.+|++
T Consensus 35 ~~~~~l~~s--pd~~-~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~ 109 (330)
T PRK11028 35 GQVQPMVIS--PDKR-HLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPL 109 (330)
T ss_pred CCCccEEEC--CCCC-EEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEE
Confidence 445566665 8998 66555 4588999999863 332 22222 234567899999 777777665 4899999999
Q ss_pred CCCc-eEEEeeccCCCCCceeEEEEecCCCceE-EeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 84 QTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 84 ~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
.+.. ........ .+.....+++++| +++++ ++...++.|.+||+.......... .. ....
T Consensus 110 ~~~g~~~~~~~~~-~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~---------------~~-~~~~ 171 (330)
T PRK11028 110 DKDGIPVAPIQII-EGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQE---------------PA-EVTT 171 (330)
T ss_pred CCCCCCCCceeec-cCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccC---------------CC-ceec
Confidence 6432 21111111 1334567889999 66555 555667999999997622110000 00 0000
Q ss_pred ecCCCceeeccee--cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeecC------CCCeeEEEEcccCCcceEE
Q 022590 162 SVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVP------ECDIWFIKFSCDFHYNAAA 232 (294)
Q Consensus 162 ~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~ 232 (294)
. .......+.|+ +++++++.. ++.|.+||+..... ....+..+... ......+.++|++ ++++
T Consensus 172 ~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg--~~ly 243 (330)
T PRK11028 172 V-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-----EIECVQTLDMMPADFSDTRWAADIHITPDG--RHLY 243 (330)
T ss_pred C-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-----CEEEEEEEecCCCcCCCCccceeEEECCCC--CEEE
Confidence 0 01223345554 678877765 89999999974311 11122222211 1123358899998 4666
Q ss_pred EEc-CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc-CCcEEEEecC
Q 022590 233 IGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAI 292 (294)
Q Consensus 233 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~ 292 (294)
++. .++.|.+|++......... .....-......++++|+|++|++++. ++.|.+|+++
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~-~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSF-EGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEE-eEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 664 5789999999764321111 111011134567999999999998765 8899999875
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.9e-18 Score=135.81 Aligned_cols=256 Identities=18% Similarity=0.260 Sum_probs=170.3
Q ss_pred ecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCC--ceEEEeeCCCcEEEEEcCCCceEEEeecc
Q 022590 18 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP--SLVVSASKDESVRLWNVQTGICILIFAGA 95 (294)
Q Consensus 18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 95 (294)
+++|++ +++... +..|.||...++.++..+.+|..+++.+.+.|... .++++++.||.|++||...+..++.+.
T Consensus 24 fSnD~k-~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~-- 99 (792)
T KOG1963|consen 24 FSNDAK-FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD-- 99 (792)
T ss_pred cccCCc-EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe--
Confidence 458998 444444 45899999999999999999999999999988544 477899999999999999999888876
Q ss_pred CCCCCceeEEEEecC-------------CCceEEeeec--CCcEEEEecccccccccc---------ceeecCCCCCC--
Q 022590 96 GGHRNEVLSVDFHPS-------------DIYRIASCGM--DNTVKIWSMKEFWTYVEK---------SFTWTDLPSKF-- 149 (294)
Q Consensus 96 ~~~~~~v~~l~~~~~-------------~~~~l~~~~~--dg~i~~wd~~~~~~~~~~---------~~~~~~~~~~~-- 149 (294)
-..++..+.+.|. +...+.+.+. -++++-+.+.+....... .+.........
T Consensus 100 --~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 100 --NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI 177 (792)
T ss_pred --cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence 3333444333220 1111111111 122222222221111000 00000000000
Q ss_pred -----------CCc-eeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC
Q 022590 150 -----------PTK-YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC 215 (294)
Q Consensus 150 -----------~~~-~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 215 (294)
... ...........|.-.+++.+++ +++++++..||+|.+|.--..+. .......+..|..
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----DSETCTLLHWHHD 252 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----ccccceEEEeccc
Confidence 000 0001111122355556666665 89999999999999996543111 2234567788889
Q ss_pred CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
.|.+++|+++| .+|++|+.+|.+.+|.+.++++....++. ++|..+.+|||+.+.+...+|+.|.+-..
T Consensus 253 ~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg-----s~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 253 EVNSLSFSSDG--AYLLSGGREGVLVLWQLETGKKQFLPRLG-----SPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred ccceeEEecCC--ceEeecccceEEEEEeecCCCcccccccC-----CeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 99999999999 69999999999999999999866655554 78999999999999999999999988765
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1e-17 Score=115.50 Aligned_cols=242 Identities=17% Similarity=0.246 Sum_probs=160.2
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc------ccee--cccC-----cceEEEEeCCCCCceEE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL------HKSF--VGHG-----DSINEIRTQPLKPSLVV 70 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~--~~h~-----~~v~~~~~~~~~~~~l~ 70 (294)
...|+++|+.++|. |. +|++++ ||.|+=|...+... .... .-|. -.|++|...|.. +-++
T Consensus 58 eqahdgpiy~~~f~---d~--~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~ 130 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH---DD--FLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSIL 130 (325)
T ss_pred ccccCCCeeeeeee---hh--heeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEE
Confidence 35899999999995 33 566665 59999998754322 1111 1122 368999999944 4455
Q ss_pred EeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590 71 SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 150 (294)
Q Consensus 71 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
.++.|+.+.-||+++|+..+.++ +|++.|.++.--. ....+++|+.||++|+||.++.+........
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y--------- 197 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY--------- 197 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEc---CCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccc---------
Confidence 55589999999999999999999 7999999999855 5556999999999999999984332111100
Q ss_pred CceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590 151 TKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 230 (294)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 230 (294)
..+......-...|-+++-+.+++++|+ ...+.+|.++..+ ....++.+ .++..+.|..+ .
T Consensus 198 ----k~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse---------~t~vfpip-a~v~~v~F~~d----~ 258 (325)
T KOG0649|consen 198 ----KNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSE---------STCVFPIP-ARVHLVDFVDD----C 258 (325)
T ss_pred ----cChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCC---------ceEEEecc-cceeEeeeecc----e
Confidence 0011111122356778888888988865 4679999999765 34444443 44666777765 4
Q ss_pred EEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEE
Q 022590 231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRW 289 (294)
Q Consensus 231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw 289 (294)
+++++..+.+.-|.+... .....+ .......+..|+... ++|-.++....+.|+
T Consensus 259 vl~~G~g~~v~~~~l~Gv---l~a~ip--~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 259 VLIGGEGNHVQSYTLNGV---LQANIP--VESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEeccccceeeeeeccE---EEEecc--CCccceeeecccCCceEEEEecccceeeeee
Confidence 777888889999988653 222222 111234444444332 455556677777765
No 196
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=5.9e-17 Score=115.90 Aligned_cols=238 Identities=13% Similarity=0.145 Sum_probs=162.6
Q ss_pred eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCc--ceEEEEeCCCCCceEE-EeeCC------CcEEE
Q 022590 10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD--SINEIRTQPLKPSLVV-SASKD------ESVRL 80 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~-s~~~d------g~i~v 80 (294)
....++|+ .|.. .+++|..+| .+||+.+--+....-+.+.+ .+.-+-|-. ++|+ .|+.+ ..|.|
T Consensus 7 ~~lsvs~N--QD~S-cFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFN--QDHS-CFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEc--cCCc-eEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEE
Confidence 44557776 7776 788887765 89999876443333222222 223333322 3333 33332 46999
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
||=...+++..+. ...+|.++.+.+ + .+++.- .+.|.||........ .....
T Consensus 80 WDD~k~~~i~el~----f~~~I~~V~l~r-~--riVvvl-~~~I~VytF~~n~k~--------------------l~~~e 131 (346)
T KOG2111|consen 80 WDDLKERCIIELS----FNSEIKAVKLRR-D--RIVVVL-ENKIYVYTFPDNPKL--------------------LHVIE 131 (346)
T ss_pred EecccCcEEEEEE----eccceeeEEEcC-C--eEEEEe-cCeEEEEEcCCChhh--------------------eeeee
Confidence 9977788888887 888999999976 3 355444 679999998852111 01111
Q ss_pred eecCCCceeeccee--cceEEE-eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590 161 ASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 237 (294)
Q Consensus 161 ~~~~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 237 (294)
....+..+.+++.. ..+|+. |-.-|.|++-|+...+.. ....++.|...|.+++++.+| ..+|+++..
T Consensus 132 t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-------~p~~I~AH~s~Iacv~Ln~~G--t~vATaStk 202 (346)
T KOG2111|consen 132 TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-------APSIINAHDSDIACVALNLQG--TLVATASTK 202 (346)
T ss_pred cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC-------CceEEEcccCceeEEEEcCCc--cEEEEeccC
Confidence 12223334444443 334443 334689999999876421 245678899999999999999 699999999
Q ss_pred Ce-EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 238 GK-IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 238 g~-i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
|+ |||||..+++.+...+- ......|.+++|||++.+||++|+.|+++|+.++.
T Consensus 203 GTLIRIFdt~~g~~l~E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 203 GTLIRIFDTEDGTLLQELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEEEEcCCCcEeeeeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 97 89999999985554443 35557899999999999999999999999999875
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-17 Score=138.49 Aligned_cols=258 Identities=10% Similarity=0.159 Sum_probs=170.6
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-------cccceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKD 75 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 75 (294)
.|.+|+..|..++.+ ++++. ++++|+.||+|++|+.... +...++..-..++.++...+ +++.+|.++.|
T Consensus 1043 hL~Ehs~~v~k~a~s-~~~~s-~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVS-SEHTS-LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKD 1119 (1431)
T ss_pred hhhhccccccceeec-CCCCc-eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCC
Confidence 466899999988887 34556 9999999999999998542 12233333567889999998 88899999999
Q ss_pred CcEEEEEcCCC--ceEEE--eeccCCC-CCc-eeEEEEecCCCc-eEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590 76 ESVRLWNVQTG--ICILI--FAGAGGH-RNE-VLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 148 (294)
Q Consensus 76 g~i~vwd~~~~--~~~~~--~~~~~~~-~~~-v~~l~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 148 (294)
|.|++.+++.. +.... ......+ .+. |..-+|...... .++.+...+.|..||++.......
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~----------- 1188 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR----------- 1188 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh-----------
Confidence 99999998762 11110 1111112 223 333444443444 788888999999999998332111
Q ss_pred CCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEccc
Q 022590 149 FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCD 225 (294)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~ 225 (294)
.......+.|++++.+ +++++.|+..|.+.+||+|=+. ++..+.. +..++..+..+|-
T Consensus 1189 ----------lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~---------~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1189 ----------LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV---------PILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred ----------hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc---------eeecccCcccCCcceEEeecc
Confidence 1122234677877776 8899999999999999999554 3333322 3366777777765
Q ss_pred CC--cceEEEEc-CCCeEEEEeccCCCceeeeecc-----------cc----ccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590 226 FH--YNAAAIGN-REGKIFVWELQSSPPVLIARLS-----------HA----QSKSPIRQTAMSYDGSTILSCCEDGAIW 287 (294)
Q Consensus 226 ~~--~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-----------~~----~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 287 (294)
.. ...+.++. ..+.|.+|++.++......... .. .+.-.....++..-+.++.+|+.|..|+
T Consensus 1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcccee
Confidence 43 23444555 6889999999887543332221 00 1112233344445567899999999999
Q ss_pred EEecCC
Q 022590 288 RWDAIP 293 (294)
Q Consensus 288 vw~~~~ 293 (294)
.||...
T Consensus 1330 ~wD~~~ 1335 (1431)
T KOG1240|consen 1330 KWDPTR 1335 (1431)
T ss_pred eccCCC
Confidence 999864
No 198
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1.9e-18 Score=127.13 Aligned_cols=228 Identities=21% Similarity=0.252 Sum_probs=160.8
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC--------C--------ccccceecccCcceEEEEeCCCCC
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--------N--------EKLHKSFVGHGDSINEIRTQPLKP 66 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~ 66 (294)
.|-.|...|+++.|+ |+|+ +||+|+.+|.|.+|... + ....+.+.+|.+.|..++|+| ++
T Consensus 60 ~Ls~H~~aVN~vRf~--p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~ 135 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFS--PDGE-LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DS 135 (434)
T ss_pred cccCCcceeEEEEEc--CCcC-eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CC
Confidence 356899999999998 9999 99999999999999865 2 123356678999999999999 99
Q ss_pred ceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc-------
Q 022590 67 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS------- 139 (294)
Q Consensus 67 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------- 139 (294)
.++++++.|.++++||+..|+....+. +|...+..++|.| -++++++-+.|...+.+.+..........
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeecc---ccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 999999999999999999999988887 7999999999999 88889988888877776665421111000
Q ss_pred ------------------------eeecCC------CC---------------CCCCceeeeceEEeecCCCceeeccee
Q 022590 140 ------------------------FTWTDL------PS---------------KFPTKYVQFPVFIASVHSNYVDCNRWL 174 (294)
Q Consensus 140 ------------------------~~~~~~------~~---------------~~~~~~~~~~~~~~~~~~~~i~~~~~~ 174 (294)
..+.+. |. .+.......|...+.....+...+.|+
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~ 291 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS 291 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence 000000 00 000111122333333333333333332
Q ss_pred --------------------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590 175 --------------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 234 (294)
Q Consensus 175 --------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 234 (294)
+-.++.+ ....+.+||.++... ....-..|-..++.++|+++| .+++..
T Consensus 292 pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P--------~~~v~nihy~~iTDiaws~dg--~~l~vS 360 (434)
T KOG1009|consen 292 PVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEP--------LAVVDNIHYSAITDIAWSDDG--SVLLVS 360 (434)
T ss_pred eeEEEeccccccccccccccceEEEEe-ecceEEEeccccccc--------eEEEeeeeeeeecceeecCCC--cEEEEe
Confidence 1133443 456799999887542 333445566789999999999 689999
Q ss_pred cCCCeEEEEeccCCC
Q 022590 235 NREGKIFVWELQSSP 249 (294)
Q Consensus 235 ~~dg~i~i~d~~~~~ 249 (294)
+.||...+.-++..+
T Consensus 361 S~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 361 STDGFCSLVTFEPWE 375 (434)
T ss_pred ccCCceEEEEEcchh
Confidence 999998888777654
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=2.5e-16 Score=114.92 Aligned_cols=228 Identities=12% Similarity=0.172 Sum_probs=166.3
Q ss_pred EEEEeecC--CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCce
Q 022590 25 FLVAGGIN--GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 102 (294)
Q Consensus 25 ~l~~~~~d--g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 102 (294)
++|..+.+ ..+++++.+.+..+..+. ...+|.++.++. +.|+++-.+. |.|||+++.+.+..+.....+...+
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccce
Confidence 56555544 348888888877777766 567899999975 5666666644 9999999999999887654566677
Q ss_pred eEEEEecCCCceEEee--ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceE
Q 022590 103 LSVDFHPSDIYRIASC--GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 178 (294)
Q Consensus 103 ~~l~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 178 (294)
.++.+++ ++.+++-= ...|.|.+||+.+ ..++..+..|.+.+.+++|+ |.+|
T Consensus 133 ~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n-----------------------l~~v~~I~aH~~~lAalafs~~G~ll 188 (391)
T KOG2110|consen 133 CALSPNN-ANCYLAYPGSTTSGDVVLFDTIN-----------------------LQPVNTINAHKGPLAALAFSPDGTLL 188 (391)
T ss_pred EeeccCC-CCceEEecCCCCCceEEEEEccc-----------------------ceeeeEEEecCCceeEEEECCCCCEE
Confidence 7887777 55566543 2468999999998 66788899999999999997 9999
Q ss_pred EEeeCCCe-EEEecCCCCCCCCCCCCceeeeeeec--CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceee--
Q 022590 179 LSKSVDNE-IVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-- 253 (294)
Q Consensus 179 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-- 253 (294)
|+++..|+ ||++.+.+++. +.++.- ....|.+++|+|++ .+|++.+..++|++|.+........
T Consensus 189 ATASeKGTVIRVf~v~~G~k---------l~eFRRG~~~~~IySL~Fs~ds--~~L~~sS~TeTVHiFKL~~~~~~~~~~ 257 (391)
T KOG2110|consen 189 ATASEKGTVIRVFSVPEGQK---------LYEFRRGTYPVSIYSLSFSPDS--QFLAASSNTETVHIFKLEKVSNNPPES 257 (391)
T ss_pred EEeccCceEEEEEEcCCccE---------eeeeeCCceeeEEEEEEECCCC--CeEEEecCCCeEEEEEecccccCCCCC
Confidence 99999997 79999988763 332221 13568999999999 5899999999999999865320000
Q ss_pred -----------------------------------eeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 254 -----------------------------------ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 254 -----------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.++...+ ...+..+.=.+..+++..++.||.++.|.+.+
T Consensus 258 p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~-~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 258 PTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESG-RKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred CCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCC-ccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 0000000 01122222224678899999999999998865
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=5.3e-18 Score=121.27 Aligned_cols=215 Identities=14% Similarity=0.118 Sum_probs=163.7
Q ss_pred ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEe
Q 022590 49 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 128 (294)
Q Consensus 49 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd 128 (294)
+....++|+|.+|++ +...+|.+.....|.||.....+.-.....+..|...|+.++|+| ..+.|++|+.|..-++|.
T Consensus 6 ~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred eeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 333467999999999 889999999999999999987764444444557999999999999 778899999999999999
Q ss_pred ccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCcee
Q 022590 129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI 206 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 206 (294)
...... -.|...+..++...+++.|+ ++.|++|+....|.+|=++..+.-...
T Consensus 84 ~~~~~~--------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs----- 138 (361)
T KOG1523|consen 84 QPSGGT--------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS----- 138 (361)
T ss_pred cCCCCe--------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh-----
Confidence 854211 45667778899999999997 889999999999999988765421110
Q ss_pred eeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC----Cc---eeeee-------ccccccCCCeEEEEEcc
Q 022590 207 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS----PP---VLIAR-------LSHAQSKSPIRQTAMSY 272 (294)
Q Consensus 207 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~---~~~~~-------~~~~~~~~~v~~~~~s~ 272 (294)
...-......|.++.|+|++ -+|++|+.|+..++|..-=. ++ ..-.+ .+.....+.+..+.|+|
T Consensus 139 KhikkPirStv~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred hhhCCccccceeeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 01112235678999999998 68999999999999975210 00 00000 11113457899999999
Q ss_pred CCCEEEEeccCCcEEEEecC
Q 022590 273 DGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 273 ~~~~l~s~~~dg~i~vw~~~ 292 (294)
+|..|+-.+.|..+.+=|..
T Consensus 217 sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCCEeeEecCCCceEEeecC
Confidence 99999999999999887653
No 201
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.8e-18 Score=132.31 Aligned_cols=216 Identities=19% Similarity=0.206 Sum_probs=147.9
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----------cccceecccCcceEEEEeCCCCCceEEE
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVS 71 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s 71 (294)
..++.|+++|.|++.. +++. .+++|+.||+|+.|++... .....+.||.+.|+.+++++ ....|++
T Consensus 338 ~tfraH~gPVl~v~v~--~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Lls 413 (577)
T KOG0642|consen 338 LTFRAHEGPVLCVVVP--SNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLS 413 (577)
T ss_pred EEEecccCceEEEEec--CCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceee
Confidence 4678999999999997 7787 9999999999999976421 23456789999999999999 7788999
Q ss_pred eeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590 72 ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 151 (294)
Q Consensus 72 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
++.||+++.|+...... ..|.....| +....+.+-.......++...-+.-.+++............ ...+
T Consensus 414 cs~DgTvr~w~~~~~~~-~~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s--~~~~----- 484 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESP-CTFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFES--SASP----- 484 (577)
T ss_pred ecCCceEEeeccCCcCc-cccCCcccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccc--cCCC-----
Confidence 99999999999866655 444432223 34466666542323333333233333333332111000000 0000
Q ss_pred ceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590 152 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 229 (294)
Q Consensus 152 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (294)
.......+..+.++ ..+.+++..|+.|+++|..+++ ++.....|...++++++.|++ .
T Consensus 485 ---------~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~---------~l~s~~a~~~svtslai~~ng--~ 544 (577)
T KOG0642|consen 485 ---------GPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK---------ILHSMVAHKDSVTSLAIDPNG--P 544 (577)
T ss_pred ---------cccccCccceEEecCCCCeeEecccCCceecccccccc---------cchheeeccceecceeecCCC--c
Confidence 00001112222222 6788999999999999999776 567777788889999999999 6
Q ss_pred eEEEEcCCCeEEEEeccCCCc
Q 022590 230 AAAIGNREGKIFVWELQSSPP 250 (294)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~ 250 (294)
+|++|+.|+.+++|.+.....
T Consensus 545 ~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 545 YLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eEEeecCCceeehhhccchhe
Confidence 999999999999999977653
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=2e-17 Score=129.72 Aligned_cols=206 Identities=16% Similarity=0.218 Sum_probs=149.4
Q ss_pred CCcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc--------c-------------------------
Q 022590 1 MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH--------K------------------------- 47 (294)
Q Consensus 1 ~~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--------~------------------------- 47 (294)
|..++.|++.|+|++|+ .||+ .+|+|+.|..|.+|+..-...+ +
T Consensus 46 lqtLKgHKDtVycVAys--~dGk-rFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~ 122 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYA--KDGK-RFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE 122 (1081)
T ss_pred ccccccccceEEEEEEc--cCCc-eeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence 35688999999999998 8999 9999999999999985421110 0
Q ss_pred --eeccc--CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCC----ceEEeee
Q 022590 48 --SFVGH--GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI----YRIASCG 119 (294)
Q Consensus 48 --~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~----~~l~~~~ 119 (294)
....| ...|.+++|.. +|++|+.|-.+|+|.+-+- +++....+..+.+..++|.+++|+|..+ ..+++..
T Consensus 123 qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D 200 (1081)
T KOG1538|consen 123 QKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD 200 (1081)
T ss_pred hhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence 00011 23567777777 8999999999999999865 6666666776778899999999999543 4566666
Q ss_pred cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce--ecceEEEeeCCCeEEEecCCCCCC
Q 022590 120 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQ 197 (294)
Q Consensus 120 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~ 197 (294)
...++.++.+.......+. .-.-.-.|+++ +|.+++.|+.|+.+++|.-..-
T Consensus 201 W~qTLSFy~LsG~~Igk~r------------------------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv-- 254 (1081)
T KOG1538|consen 201 WGQTLSFYQLSGKQIGKDR------------------------ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV-- 254 (1081)
T ss_pred ccceeEEEEecceeecccc------------------------cCCCCchhheeccCCcEEEEccCCCceEEEeecCe--
Confidence 6666776666642111111 11112234554 4999999999999999975422
Q ss_pred CCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590 198 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 247 (294)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 247 (294)
.+.+.......|+.+...|++ .+++.|+.||+|..|++-.
T Consensus 255 --------rLGTvg~~D~WIWtV~~~PNs--Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 255 --------RLGTVGEQDSWIWTVQAKPNS--QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred --------EEeeccccceeEEEEEEccCC--ceEEEEEccCeeehhhhHH
Confidence 344444556789999999999 5899999999999998743
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=7e-20 Score=146.23 Aligned_cols=214 Identities=17% Similarity=0.325 Sum_probs=155.1
Q ss_pred cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc
Q 022590 44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 123 (294)
Q Consensus 44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~ 123 (294)
+.++.+.+|..+|.|..|.. .+.++++|+.|..++||.++++.++.... ||.+.|+.++.+. ++.++++++.|..
T Consensus 181 k~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~r---Ghs~ditdlavs~-~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCR---GHSGDITDLAVSS-NNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCC---CCccccchhccch-hhhhhhhcccCce
Confidence 44566778999999999998 89999999999999999999999998888 8999999999997 8888999999999
Q ss_pred EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCC-
Q 022590 124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG- 202 (294)
Q Consensus 124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~- 202 (294)
|++|.+.. ..++..+.+|.+.|++++|++.. +.+.||++++||.+-.-......
T Consensus 256 IrvWrl~~-----------------------~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp 310 (1113)
T KOG0644|consen 256 IRVWRLPD-----------------------GAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRP 310 (1113)
T ss_pred EEEEecCC-----------------------CchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCC
Confidence 99999999 77888999999999999998544 77899999999998211100000
Q ss_pred ----Cceeeeeee--------------------------cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCcee
Q 022590 203 ----TADILQKYP--------------------------VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 252 (294)
Q Consensus 203 ----~~~~~~~~~--------------------------~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 252 (294)
......... .+...+..+.++.+.+ .+.++.-.+-.+++|++.++..
T Consensus 311 ~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l-- 387 (1113)
T KOG0644|consen 311 LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQL-- 387 (1113)
T ss_pred CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccc-ccceeeeeeeEeeeeecccchh--
Confidence 000000000 0000111111111111 2334444556677788777652
Q ss_pred eeeccccccCCCeEEEEEccCCCE-EEEeccCCcEEEEecC
Q 022590 253 IARLSHAQSKSPIRQTAMSYDGST-ILSCCEDGAIWRWDAI 292 (294)
Q Consensus 253 ~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~vw~~~ 292 (294)
...+. +|...+..+.++|-... ..+++.||...|||+-
T Consensus 388 ~H~l~--ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 388 LHNLM--GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred hhhhc--ccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 22222 67788999999996554 4578999999999984
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=2.5e-18 Score=131.21 Aligned_cols=184 Identities=21% Similarity=0.295 Sum_probs=145.1
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
++.|.+.|.+-.|+ |||. -|++++.||.|++|. .+|.+..++-....+|.|++|.|+..+.+++.+ +.+.|=.+
T Consensus 100 v~AH~~A~~~gRW~--~dGt-gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL 173 (737)
T KOG1524|consen 100 ISAHAAAISSGRWS--PDGA-GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPL 173 (737)
T ss_pred hhhhhhhhhhcccC--CCCc-eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeec
Confidence 45899999999998 9998 899999999999998 567776677777889999999996666666544 45666666
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
.-...+...+ .|.+-|.++.|+| ..+++++|+.|-..++||-.. .+++....
T Consensus 174 ~~n~k~i~Wk---AHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G------------------------~~Lf~S~~ 225 (737)
T KOG1524|consen 174 AANSKIIRWR---AHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG------------------------ANLFTSAA 225 (737)
T ss_pred ccccceeEEe---ccCcEEEEeecCc-cccceeecCCceeEEeecccC------------------------cccccCCh
Confidence 6555566666 6999999999999 888999999999999999874 45667788
Q ss_pred CCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590 164 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 243 (294)
Q Consensus 164 ~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~ 243 (294)
|+-+|++++|+.+.++..+.-.++|+=.++ .+.|..++||+|| ..+++|+..|.+.+=
T Consensus 226 ~ey~ITSva~npd~~~~v~S~nt~R~~~p~--------------------~GSifnlsWS~DG--TQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 226 EEYAITSVAFNPEKDYLLWSYNTARFSSPR--------------------VGSIFNLSWSADG--TQATCGTSTGQLIVA 283 (737)
T ss_pred hccceeeeeeccccceeeeeeeeeeecCCC--------------------ccceEEEEEcCCC--ceeeccccCceEEEe
Confidence 999999999995544444444555532222 3568889999999 578888888877653
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=1.4e-15 Score=117.92 Aligned_cols=239 Identities=11% Similarity=0.068 Sum_probs=143.1
Q ss_pred EEEEeecCCeEEEEEcCC-cc--ccceecccCcceEEEEeCCCCCceEEEe-eCCCcEEEEEcCC-CceEEEeeccCCCC
Q 022590 25 FLVAGGINGIIRVIDVSN-EK--LHKSFVGHGDSINEIRTQPLKPSLVVSA-SKDESVRLWNVQT-GICILIFAGAGGHR 99 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~-~~~~~~~~~~~~~~ 99 (294)
+.++...++.|++|++.+ ++ .++.+. +.+....++++| ++++|+++ ..++.|.+|++.. ++. ...... ...
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~-~~~ 79 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES-PLP 79 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCce-EEeeee-cCC
Confidence 344556789999999964 33 344444 345678899999 77777655 4588999999963 332 211110 133
Q ss_pred CceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cc
Q 022590 100 NEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 176 (294)
Q Consensus 100 ~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 176 (294)
.....++|+| +++++++++ .++.|.+|++........ ...... +......+.++ ++
T Consensus 80 ~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~-------------------~~~~~~-~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 80 GSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVA-------------------PIQIIE-GLEGCHSANIDPDNR 138 (330)
T ss_pred CCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCC-------------------ceeecc-CCCcccEeEeCCCCC
Confidence 4567899999 666666655 588999999974211000 011111 11223334444 66
Q ss_pred eEE-EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-CCeEEEEeccCC--Ccee
Q 022590 177 FIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-EGKIFVWELQSS--PPVL 252 (294)
Q Consensus 177 ~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~~ 252 (294)
+++ +...++.|.+||+.+....... . ....... .......+.|+|+++ ++++... ++.|.+|+++.. +...
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~-~-~~~~~~~-~g~~p~~~~~~pdg~--~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQ-E-PAEVTTV-EGAGPRHMVFHPNQQ--YAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCccccc-C-CCceecC-CCCCCceEEECCCCC--EEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 665 4556799999999763211100 0 0001111 133466799999994 6666554 899999999742 3222
Q ss_pred eeeccc-c---ccCCCeEEEEEccCCCEEEEecc-CCcEEEEecCC
Q 022590 253 IARLSH-A---QSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAIP 293 (294)
Q Consensus 253 ~~~~~~-~---~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~~ 293 (294)
...+.. . .+......+.++|++++|+++.. ++.|.+|++++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 222221 0 11122346899999999998854 78899999853
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=1.2e-18 Score=130.42 Aligned_cols=226 Identities=17% Similarity=0.229 Sum_probs=175.2
Q ss_pred EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590 12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 91 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 91 (294)
+.+.++ .+|+ +++.|+..|.|..+|..++++...+. -...|.++.|-. +.+++|++-. ..+.|||- .|..+..
T Consensus 133 Y~~~yt--rnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVAQK-~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 133 YHLDYT--RNGR-HLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAVAQK-KYVYVYDN-NGTELHC 205 (545)
T ss_pred eeeeec--CCcc-EEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHhhhh-ceEEEecC-CCcEEee
Confidence 455555 8899 99999999999999999999888877 357899999988 7777777655 77999996 6777888
Q ss_pred eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec
Q 022590 92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 171 (294)
Q Consensus 92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 171 (294)
+. -...|..+.|.| ...+|++++..|.++.-|+..+.. +..+..-.+.+..+
T Consensus 206 lk----~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gkl-----------------------Va~~~t~~G~~~vm 257 (545)
T KOG1272|consen 206 LK----RHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKL-----------------------VASIRTGAGRTDVM 257 (545)
T ss_pred hh----hcCchhhhcccc-hhheeeecccCCceEEEeechhhh-----------------------hHHHHccCCccchh
Confidence 77 456799999999 888999999999999999998543 22333333444444
Q ss_pred cee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC
Q 022590 172 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 249 (294)
Q Consensus 172 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 249 (294)
.-+ ...+-+|...|+|.+|...+.+ ++..+..|.++|.++++.+.| .|+++.+.|..++|||++...
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~ske---------PLvKiLcH~g~V~siAv~~~G--~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSKE---------PLVKILCHRGPVSSIAVDRGG--RYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCcc---------hHHHHHhcCCCcceEEECCCC--cEEeecccccceeEeeecccc
Confidence 444 5577788999999999998765 566777889999999999999 699999999999999999876
Q ss_pred ceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 250 PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
....... ..+...+++|..| +||. +....|.||.
T Consensus 327 ql~t~~t-----p~~a~~ls~Sqkg-lLA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 327 QLHTYRT-----PHPASNLSLSQKG-LLAL-SYGDHVQIWK 360 (545)
T ss_pred ccceeec-----CCCcccccccccc-ceee-ecCCeeeeeh
Confidence 3333222 2457788888765 3444 4455688884
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.1e-16 Score=115.09 Aligned_cols=232 Identities=14% Similarity=0.198 Sum_probs=152.6
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG- 86 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~- 86 (294)
-.+..++|.. .-. .+|++..|-.|++||-.. +....++ .....|+|++|-|.....|+.|+..| |.+|.....
T Consensus 99 ~dlr~~aWhq--H~~-~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQ--HII-AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred cceeeEeech--hhh-hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence 3566788873 232 688899999999999766 4444444 34568999999998888888888855 889976521
Q ss_pred ---c--------eEEEeeccCCCCCceeEEEEecCCCceEEeeec-CCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590 87 ---I--------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 154 (294)
Q Consensus 87 ---~--------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (294)
. ....++. .+| .+|++|.|++ ++..+++++. |..|.+||..++...
T Consensus 174 n~~r~~~~~s~~~~qvl~~-pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~------------------- 231 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQD-PGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKI------------------- 231 (445)
T ss_pred ccccccccccccchhheeC-CCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcc-------------------
Confidence 1 1111221 144 6899999999 7888888764 678999999984321
Q ss_pred eeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590 155 QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 232 (294)
Q Consensus 155 ~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 232 (294)
|+ .....+.+.-+.|+ +++|+++.-|+..++|+..... .........+.+...+|+|+|. .+|+
T Consensus 232 --pL--~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w---------t~erw~lgsgrvqtacWspcGs-fLLf 297 (445)
T KOG2139|consen 232 --PL--IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW---------TKERWILGSGRVQTACWSPCGS-FLLF 297 (445)
T ss_pred --cc--cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc---------eecceeccCCceeeeeecCCCC-EEEE
Confidence 11 12344567777886 8899999999999999654321 1122223345788999999996 3555
Q ss_pred EEcCCCeEEEEeccCCCc--ee-----------eeecc-------ccccCCCeEEEEEccCCCEEEEeccC
Q 022590 233 IGNREGKIFVWELQSSPP--VL-----------IARLS-------HAQSKSPIRQTAMSYDGSTILSCCED 283 (294)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~--~~-----------~~~~~-------~~~~~~~v~~~~~s~~~~~l~s~~~d 283 (294)
+.+.. -++|.+...+. .. ...+. ..-..+++.+++|.|.|.+||+.-..
T Consensus 298 ~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 298 ACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred EEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 55543 34454432211 00 01111 01124678999999999999986443
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=1.1e-16 Score=127.76 Aligned_cols=211 Identities=15% Similarity=0.098 Sum_probs=136.9
Q ss_pred CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---CcEEEEEcCCCceEEEeeccCCCCCceeEEEEe
Q 022590 32 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 108 (294)
Q Consensus 32 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~ 108 (294)
+..|.+||.+... .+.+..|...+.+.+|+| +++.|+.++.+ ..|.+||+.+++.... .. ..+....++|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~---~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVV-AS---FRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEE-ec---CCCccCceeEC
Confidence 4689999986554 456777888999999999 88888877653 3699999988764332 21 22234468999
Q ss_pred cCCCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee-CC
Q 022590 109 PSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VD 184 (294)
Q Consensus 109 ~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d 184 (294)
| ++..|+.+ +.+|.+.+|.+.... .....+..+...+....|+ |+.|+..+ .+
T Consensus 257 P-DG~~La~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~ 313 (429)
T PRK01742 257 P-DGSRLAFASSKDGVLNIYVMGANG----------------------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS 313 (429)
T ss_pred C-CCCEEEEEEecCCcEEEEEEECCC----------------------CCeEeeccCCCCcCCEEECCCCCEEEEEECCC
Confidence 9 77767665 468877666443210 0122333455556677776 66665444 57
Q ss_pred CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCC
Q 022590 185 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 264 (294)
Q Consensus 185 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 264 (294)
+..++|++..... . .... .+.. ....|+|+++ .++..+.++ +.+||+.+++..... . . ..
T Consensus 314 g~~~I~~~~~~~~-----~---~~~l-~~~~--~~~~~SpDG~--~ia~~~~~~-i~~~Dl~~g~~~~lt--~--~--~~ 373 (429)
T PRK01742 314 GSPQVYRMSASGG-----G---ASLV-GGRG--YSAQISADGK--TLVMINGDN-VVKQDLTSGSTEVLS--S--T--FL 373 (429)
T ss_pred CCceEEEEECCCC-----C---eEEe-cCCC--CCccCCCCCC--EEEEEcCCC-EEEEECCCCCeEEec--C--C--CC
Confidence 8888888754321 1 1111 1222 3467999994 676666655 666999887633221 1 1 12
Q ss_pred eEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 265 IRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 265 v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
...+.|+|+|++|+.++.+|.+.+|++
T Consensus 374 ~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 374 DESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEEE
Confidence 346789999999999999998888875
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=1.4e-16 Score=127.13 Aligned_cols=216 Identities=17% Similarity=0.118 Sum_probs=137.7
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecC---CeEEEEEcCCccc--cceecccCcceEEEEeCCCCCceEEEe-eCCCcE
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSA-SKDESV 78 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i 78 (294)
..|...+...+|+ |||+ .|+..+.+ ..|++||+.+++. +..+.+ ....++|+| +++.|+.+ +.+|.+
T Consensus 200 t~~~~~v~~p~wS--PDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP-DG~~La~~~~~~g~~ 272 (429)
T PRK01742 200 NRSSQPLMSPAWS--PDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP-DGSRLAFASSKDGVL 272 (429)
T ss_pred ccCCCccccceEc--CCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC-CCCEEEEEEecCCcE
Confidence 3566788899998 9998 77776543 4799999988753 333333 345689999 77777665 468876
Q ss_pred EEE--EcCCCceEEEeeccCCCCCceeEEEEecCCCceEE-eeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590 79 RLW--NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 155 (294)
Q Consensus 79 ~vw--d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (294)
.|| |+.+++. ..+. .+...+....|+| ++..|+ ++..+|..++|++......
T Consensus 273 ~Iy~~d~~~~~~-~~lt---~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~-------------------- 327 (429)
T PRK01742 273 NIYVMGANGGTP-SQLT---SGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGG-------------------- 327 (429)
T ss_pred EEEEEECCCCCe-Eeec---cCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC--------------------
Confidence 666 5555554 3344 3666788999999 666555 4456788999987642110
Q ss_pred eceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590 156 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 233 (294)
Q Consensus 156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 233 (294)
...+ .+.. ....|+ ++.++..+.++ +.+||+.+++.. .+ ... .......|+|++ .+++.
T Consensus 328 --~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-------~l---t~~-~~~~~~~~sPdG--~~i~~ 388 (429)
T PRK01742 328 --ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-------VL---SST-FLDESPSISPNG--IMIIY 388 (429)
T ss_pred --eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-------Ee---cCC-CCCCCceECCCC--CEEEE
Confidence 0011 1222 223443 78888777655 556998876421 11 111 112457799999 58888
Q ss_pred EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590 234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 273 (294)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 273 (294)
++.+|...+|++..........+. .|.+.+...+|+|-
T Consensus 389 ~s~~g~~~~l~~~~~~G~~~~~l~--~~~g~~~~p~wsp~ 426 (429)
T PRK01742 389 SSTQGLGKVLQLVSADGRFKARLP--GSDGQVKFPAWSPY 426 (429)
T ss_pred EEcCCCceEEEEEECCCCceEEcc--CCCCCCCCcccCCC
Confidence 888898888886432222444444 55567888999984
No 210
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=5.4e-19 Score=132.25 Aligned_cols=228 Identities=16% Similarity=0.195 Sum_probs=172.0
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
.+.|.++.|- .+.+ ++|++- ...++||| ..|..++.++.| ..|..+.|-| ..-+|++++..|.++.-|+.+|+
T Consensus 170 ~Etv~Dv~~L--Hneq-~~AVAQ-K~y~yvYD-~~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gk 242 (545)
T KOG1272|consen 170 METVRDVTFL--HNEQ-FFAVAQ-KKYVYVYD-NNGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGK 242 (545)
T ss_pred hhhhhhhhhh--cchH-HHHhhh-hceEEEec-CCCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhh
Confidence 3566677775 4444 666654 55899999 467777778765 6789999999 77889999999999999999999
Q ss_pred eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590 88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (294)
.+..+.. -.+.+..++-+| -+..+-+|...|+|.+|.... ..|+..+..|.++
T Consensus 243 lVa~~~t---~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s-----------------------kePLvKiLcH~g~ 295 (545)
T KOG1272|consen 243 LVASIRT---GAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS-----------------------KEPLVKILCHRGP 295 (545)
T ss_pred hhHHHHc---cCCccchhhcCC-ccceEEEcCCCceEEecCCCC-----------------------cchHHHHHhcCCC
Confidence 9998873 667889999999 778899999999999999998 7788889999999
Q ss_pred eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590 168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 245 (294)
Q Consensus 168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 245 (294)
|.+++++ |.++++.+.|..++|||++...+ +..+.. ..+...+++|..+ +||.+ ....+.+|.-
T Consensus 296 V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q---------l~t~~t-p~~a~~ls~Sqkg---lLA~~-~G~~v~iw~d 361 (545)
T KOG1272|consen 296 VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ---------LHTYRT-PHPASNLSLSQKG---LLALS-YGDHVQIWKD 361 (545)
T ss_pred cceEEECCCCcEEeecccccceeEeeeccccc---------cceeec-CCCcccccccccc---ceeee-cCCeeeeehh
Confidence 9999997 99999999999999999997652 222222 3456678888877 45544 4557999953
Q ss_pred c-CCC-ceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590 246 Q-SSP-PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284 (294)
Q Consensus 246 ~-~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 284 (294)
. .+. ......+.+ ...++|..+.|.|-...|-.|...|
T Consensus 362 ~~~~s~~~~~pYm~H-~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 362 ALKGSGHGETPYMNH-RCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhcCCCCCCcchhhh-ccCcccccceeccHHHeeeccccCC
Confidence 2 211 111112222 2335899999999766665554444
No 211
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.2e-16 Score=121.63 Aligned_cols=246 Identities=14% Similarity=0.162 Sum_probs=173.0
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc----------------------------ceecccC----
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH----------------------------KSFVGHG---- 53 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----------------------------~~~~~h~---- 53 (294)
++.+.-+.|..+ |||+.++|+|...-.|++||+.+..+. +.+.-|.
T Consensus 49 e~p~ast~ik~s--~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVS--PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEec--CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 445555666665 999988899999999999998654211 1111111
Q ss_pred -------cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590 54 -------DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126 (294)
Q Consensus 54 -------~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~ 126 (294)
..-.+++++..+..+++.|+ ...|.=++++.|..+..+. -..+.++++..++ ...+|++|+.+|.+-.
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~-~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFE---TDSGELNVVSINE-EHGLLACGTEDGVVEF 201 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeec-CcceEEEEccccccccccc---cccccceeeeecC-ccceEEecccCceEEE
Confidence 12244555543444554444 4567778999999888887 3668999999999 8888999999999999
Q ss_pred EeccccccccccceeecCCCCCCCCceeeeceEEeecCCC-----ceeeccee--cceEEEeeCCCeEEEecCCCCCCCC
Q 022590 127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-----YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP 199 (294)
Q Consensus 127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~ 199 (294)
||.+.......... ......|+. .|+++.|+ |-.+++|+.+|.+.|||++..+.
T Consensus 202 wDpR~ksrv~~l~~-----------------~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-- 262 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDA-----------------ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-- 262 (703)
T ss_pred ecchhhhhheeeec-----------------ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--
Confidence 99998332111110 111222333 48999996 66899999999999999998764
Q ss_pred CCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590 200 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS 279 (294)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 279 (294)
.+..-.....+|..+.|.+.+..+.+++. ....++|||-.++++...... ...++.+|+-|++.++++
T Consensus 263 ------l~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-----t~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 263 ------LLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-----TSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred ------eeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-----cCCcCceeeecCCceEEE
Confidence 44444555678889999887554556554 467899999999975433322 245999999999999999
Q ss_pred eccCCcEEEE
Q 022590 280 CCEDGAIWRW 289 (294)
Q Consensus 280 ~~~dg~i~vw 289 (294)
+-+++.+..|
T Consensus 331 Ane~~~m~~y 340 (703)
T KOG2321|consen 331 ANESSKMHTY 340 (703)
T ss_pred ecCCCcceeE
Confidence 9888877655
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.6e-17 Score=119.50 Aligned_cols=211 Identities=14% Similarity=0.152 Sum_probs=148.3
Q ss_pred ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC------CceEEEeeccCCCCCceeEEEEecCCCceEEeeec
Q 022590 47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 120 (294)
Q Consensus 47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~ 120 (294)
+-+.+|.+.|++|.|+. ++++|++|+.|..+++|+++. .+++..... .|...|.|++|.. .+..+++|+.
T Consensus 50 KD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~--~H~SNIF~L~F~~-~N~~~~SG~~ 125 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH--PHRSNIFSLEFDL-ENRFLYSGER 125 (609)
T ss_pred hhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccC--ccccceEEEEEcc-CCeeEecCCC
Confidence 34567999999999999 799999999999999999863 344444332 4778999999998 8899999999
Q ss_pred CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe--ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCC
Q 022590 121 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA--SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 196 (294)
Q Consensus 121 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~ 196 (294)
+++|...|+.+.. .+..+ ....+.|..+..+ .+.|++.+.++.|.+||.+...
T Consensus 126 ~~~VI~HDiEt~q-----------------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 126 WGTVIKHDIETKQ-----------------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred cceeEeeecccce-----------------------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 9999999999832 22221 1222366666655 7899999999999999998765
Q ss_pred CCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc---ccccCCCeEEEEEccC
Q 022590 197 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS---HAQSKSPIRQTAMSYD 273 (294)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~ 273 (294)
. +..++. ..........+.|.|... .+|++.+..+-+-+||.+..+......-. .........++.|+|.
T Consensus 183 ~-----~~~~~~-~AN~~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~ 255 (609)
T KOG4227|consen 183 N-----PISLVL-PANSGKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS 255 (609)
T ss_pred C-----CCceee-ecCCCccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC
Confidence 3 222222 222234567788999876 68899999999999999876532221111 1111223467889999
Q ss_pred CCEEEEeccCCcEEEEec
Q 022590 274 GSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 274 ~~~l~s~~~dg~i~vw~~ 291 (294)
|..|.+--....-.+||+
T Consensus 256 G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 256 GNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred CCeehhhhccCCCEEeee
Confidence 887766543333334443
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=2.3e-17 Score=125.90 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=113.7
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----------------------------cccceecccCcceEEE
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------------------------KLHKSFVGHGDSINEI 59 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------------------------~~~~~~~~h~~~v~~~ 59 (294)
+..|+|+.|- |.+...++++-.+|.+++||..-. .++..+.--++.|+..
T Consensus 219 ktsvT~ikWv--pg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f 296 (636)
T KOG2394|consen 219 KSSVTCIKWV--PGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF 296 (636)
T ss_pred ccceEEEEEE--eCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce
Confidence 4789999999 444447888889999999975311 1112222234578999
Q ss_pred EeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc
Q 022590 60 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS 139 (294)
Q Consensus 60 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 139 (294)
+|+| |+++||+.+.||.+||+|..+.+.+..++ ..-+...|++|+| |+.+|++|++|-.|.||.+..
T Consensus 297 ~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---SYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~e-------- 363 (636)
T KOG2394|consen 297 AFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMK---SYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEE-------- 363 (636)
T ss_pred eEcC-CCceEEEEecCceEEEeeccHHHHHHHHH---hhccceEEEEEcC-CccEEEecCCcceEEEEEecc--------
Confidence 9999 99999999999999999999988877766 3557899999999 999999999999999999998
Q ss_pred eeecCCCCCCCCceeeeceEEeecCCCceeecceec
Q 022590 140 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG 175 (294)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 175 (294)
...+..-.+|..+|..++|+.
T Consensus 364 ---------------rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 ---------------RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ---------------ceEEEeccccccceeeEeecc
Confidence 666778899999999999985
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=1.7e-16 Score=132.01 Aligned_cols=225 Identities=17% Similarity=0.254 Sum_probs=156.8
Q ss_pred EEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-------ceEEEeeccCCCCCceeEEEEecC
Q 022590 38 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-------ICILIFAGAGGHRNEVLSVDFHPS 110 (294)
Q Consensus 38 w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~v~~l~~~~~ 110 (294)
|+. .|..+..+..|...|..++.++.++.++++|+.||+|++||...- +...++. .....+.++.+.+
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys---~~~sr~~~vt~~~- 1108 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS---PEGSRVEKVTMCG- 1108 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe---ccCCceEEEEecc-
Confidence 553 577888889999999999999856699999999999999998632 1222222 2567899999998
Q ss_pred CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cc-eEEEeeCCCe
Q 022590 111 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GD-FILSKSVDNE 186 (294)
Q Consensus 111 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~-~l~~~~~d~~ 186 (294)
.++.+|+++.||.|++.++.......... ..............+.+-+|. +. .++.+..-+.
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~--------------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVA--------------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEcccccccccee--------------eeeecccccCCCceEEeecccccccceeEEEEEeccc
Confidence 88889999999999999998731100000 000011111122233333442 33 7788888999
Q ss_pred EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeE
Q 022590 187 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR 266 (294)
Q Consensus 187 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 266 (294)
|..||+++..... ..+.+...+.|++++.+|.+ .+++.|+..|.+.+||++-..+. ..+.+ ++..+|+
T Consensus 1175 iv~~D~r~~~~~w-------~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i--~sw~~-P~~~~i~ 1242 (1431)
T KOG1240|consen 1175 IVSWDTRMRHDAW-------RLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPI--LSWEH-PARAPIR 1242 (1431)
T ss_pred eEEecchhhhhHH-------hhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCcee--ecccC-cccCCcc
Confidence 9999999765321 12233345779999999999 69999999999999999988644 34443 3347888
Q ss_pred EEEEccCC---CEEEEec--cCCcEEEEecCC
Q 022590 267 QTAMSYDG---STILSCC--EDGAIWRWDAIP 293 (294)
Q Consensus 267 ~~~~s~~~---~~l~s~~--~dg~i~vw~~~~ 293 (294)
.+..+|-. ...++++ ..+.|.+|++..
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 88887743 4555544 567899999864
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=1.8e-16 Score=121.02 Aligned_cols=192 Identities=14% Similarity=0.127 Sum_probs=133.5
Q ss_pred CCceEEEeeCCCcEEEEEcCCCceEEEeecc-CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeec
Q 022590 65 KPSLVVSASKDESVRLWNVQTGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 143 (294)
Q Consensus 65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 143 (294)
.+--|..|-.-|.|.+.|....+..+.+... .-.+..|+|+.|-|.+...++++-.+|.+.+||..-............
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 4445677778899999887663322222110 013468999999998888899999999999998854322222222221
Q ss_pred CCCCCCCC-----ceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590 144 DLPSKFPT-----KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 216 (294)
Q Consensus 144 ~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (294)
..+..+.. .....|+..+..-...|...+|+ |.+||+.+.||.+||||..+.+ ++...+.--+.
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e---------Llg~mkSYFGG 334 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE---------LLGVMKSYFGG 334 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH---------HHHHHHhhccc
Confidence 21111111 11124555555566788888886 8999999999999999998655 33333333467
Q ss_pred eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEc
Q 022590 217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 271 (294)
Q Consensus 217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 271 (294)
..+++|+||+ .++++|++|-.|.||.+...+ .+.+-. +|+..|+.++|.
T Consensus 335 LLCvcWSPDG--KyIvtGGEDDLVtVwSf~erR--VVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 335 LLCVCWSPDG--KYIVTGGEDDLVTVWSFEERR--VVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred eEEEEEcCCc--cEEEecCCcceEEEEEeccce--EEEecc--ccccceeeEeec
Confidence 8899999999 599999999999999998875 444444 899999999998
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=119.32 Aligned_cols=222 Identities=15% Similarity=0.132 Sum_probs=156.6
Q ss_pred eecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC
Q 022590 17 ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 96 (294)
Q Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 96 (294)
+|+|+|+ ++|+.+.. .+.|-|.++.+..+.+.- -+.|.-+.|..+....|.....|+.|.+|++...+-...+.
T Consensus 15 ~fSp~g~-yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId--- 88 (447)
T KOG4497|consen 15 SFSPCGN-YIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID--- 88 (447)
T ss_pred eECCCCC-eeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec---
Confidence 3459999 99998876 888999888887766653 45678899998455566677889999999999998888887
Q ss_pred CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--
Q 022590 97 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 174 (294)
Q Consensus 97 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 174 (294)
.-..++.+++|+|++.++|.+...|-.|.+|.+.+.. ...+......+..++|+
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~------------------------~~~~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK------------------------GYLLPHPKTNVKGYAFHPD 144 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce------------------------eEEecccccCceeEEECCC
Confidence 5778899999999555888888999999999999721 22222233445666665
Q ss_pred cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590 175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 254 (294)
Q Consensus 175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (294)
|++.+.++.......+.+... .....+.++....-..+.+.|+|+| +.++ +||---.-.+...
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c------~~W~ll~~f~~dT~DltgieWsPdg--~~la---------Vwd~~Leykv~aY 207 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSC------KAWILLKEFKLDTIDLTGIEWSPDG--NWLA---------VWDNVLEYKVYAY 207 (447)
T ss_pred CceeeeeecccHHHHHHHHhh------HHHHHHHhcCCCcccccCceECCCC--cEEE---------Eecchhhheeeee
Confidence 777766665422222222211 1344566677777778899999999 4555 5553222111111
Q ss_pred eccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 255 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 255 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
...-.+..++|+|.+++|+.|+.|+.++|.+
T Consensus 208 -----e~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 208 -----ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred -----eeccceeEEEeccccceEEeeccchhhhhhc
Confidence 1224588999999999999999999998754
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1.7e-14 Score=103.56 Aligned_cols=219 Identities=14% Similarity=0.217 Sum_probs=150.1
Q ss_pred CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC-CCceEEEeeccCCCCCceeEEEEecCC
Q 022590 33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSD 111 (294)
Q Consensus 33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~ 111 (294)
..|.|||-...+++.++. ...+|.++.+.+ ..+++.- .+.|.||... +.+.+..+..... ...+.+++-+. +
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~N-PkGlC~~~~~~-~ 147 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-PKGLCSLCPTS-N 147 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccC-CCceEeecCCC-C
Confidence 579999966667777776 678999999987 4555554 4789999997 5566666654221 22344444333 3
Q ss_pred CceEEe-eecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCe-E
Q 022590 112 IYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE-I 187 (294)
Q Consensus 112 ~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~-i 187 (294)
..+||. |-.-|.|++-|+..... .+.....+|...|.|++.+ |..+|+++..|+ |
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~---------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKP---------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLI 206 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCc---------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence 334443 44669999999987321 1346788999999999997 999999999998 8
Q ss_pred EEecCCCCCCCCCCCCceeeeeee--cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceee-------e--ec
Q 022590 188 VLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-------A--RL 256 (294)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~--~~ 256 (294)
||||..+++. +.++. .....+++++|+|+. .+|++++..|++.+|.++....... . .+
T Consensus 207 RIFdt~~g~~---------l~E~RRG~d~A~iy~iaFSp~~--s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~l 275 (346)
T KOG2111|consen 207 RIFDTEDGTL---------LQELRRGVDRADIYCIAFSPNS--SWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVL 275 (346)
T ss_pred EEEEcCCCcE---------eeeeecCCchheEEEEEeCCCc--cEEEEEcCCCeEEEEEeecCCCCcccccccccccccc
Confidence 9999998873 33333 234679999999999 6999999999999999876431111 0 00
Q ss_pred c-----------ccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 257 S-----------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 257 ~-----------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
+ ..-..++..-++|-.+.+.++..+.||.-+-+.
T Consensus 276 pky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 276 PKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred chhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 0 001123455567776656666666788655443
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=4.3e-16 Score=114.45 Aligned_cols=221 Identities=12% Similarity=0.164 Sum_probs=163.4
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc----ccceecccCcceEEEEeCCCCCceEEEeeCC--CcEEEEE
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKD--ESVRLWN 82 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~i~vwd 82 (294)
.+|-.++. .+| .|+++-.+|.+.+|..+.+. ....+..+ ..+..|.-++....++++|+.. ..+.+||
T Consensus 106 ~~I~gl~~---~dg--~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 106 KSIKGLKL---ADG--TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccchhh---cCC--EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 34445554 356 58888999999999987443 22233323 5677777788677788889999 8899999
Q ss_pred cCCCceEEEeeccCC------CCCceeEEEEecCC--CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590 83 VQTGICILIFAGAGG------HRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 154 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~------~~~~v~~l~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (294)
+++.+.+..-+.... -.-.++++.|-+ + .+.|++++.-+.+++||.+..
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q---------------------- 236 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ---------------------- 236 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc----------------------
Confidence 998866554432110 122467889988 6 788999999999999999974
Q ss_pred eeceEEeecCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590 155 QFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 232 (294)
Q Consensus 155 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 232 (294)
+.|+..+..-+.+++++.. +++.+++|..-+.+..||++.+.. ....+..-.+.+.++..+|.. .+++
T Consensus 237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--------~g~~~kg~tGsirsih~hp~~--~~la 306 (412)
T KOG3881|consen 237 RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--------LGCGLKGITGSIRSIHCHPTH--PVLA 306 (412)
T ss_pred CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--------eccccCCccCCcceEEEcCCC--ceEE
Confidence 5677777777788887766 499999999999999999998763 333466677889999999988 5999
Q ss_pred EEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590 233 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 273 (294)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 273 (294)
+++-|..+||+|+++.+.+....+. ..++++-+.++
T Consensus 307 s~GLDRyvRIhD~ktrkll~kvYvK-----s~lt~il~~~~ 342 (412)
T KOG3881|consen 307 SCGLDRYVRIHDIKTRKLLHKVYVK-----SRLTFILLRDD 342 (412)
T ss_pred eeccceeEEEeecccchhhhhhhhh-----ccccEEEecCC
Confidence 9999999999999996533332222 34666666543
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.2e-14 Score=106.11 Aligned_cols=249 Identities=15% Similarity=0.184 Sum_probs=155.1
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cc----------cceecccCcceEEEEeCCCCCceEEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KL----------HKSFVGHGDSINEIRTQPLKPSLVVS 71 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~----------~~~~~~h~~~v~~~~~~~~~~~~l~s 71 (294)
..+..|.|++|- |.+..-|+.|+..| |.+|..+.. .. +...++| .+|++|+|.+ ++..+++
T Consensus 138 ~sQrnvtclawR--PlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~t 212 (445)
T KOG2139|consen 138 VSQRNVTCLAWR--PLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVT 212 (445)
T ss_pred hhhcceeEEEec--cCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEee
Confidence 456789999998 65555788888765 999986421 11 1122345 6899999999 7888888
Q ss_pred eeC-CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590 72 ASK-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 150 (294)
Q Consensus 72 ~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
++. |..|.|||+.++..+.... .-.+.++-+.|+| ++.+|+++.-|+..++|.....
T Consensus 213 AS~gsssi~iWdpdtg~~~pL~~---~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~------------------ 270 (445)
T KOG2139|consen 213 ASFGSSSIMIWDPDTGQKIPLIP---KGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQS------------------ 270 (445)
T ss_pred cccCcceEEEEcCCCCCcccccc---cCCCceeeEEEcC-CCCEEEEecccceeeeehhccc------------------
Confidence 875 6789999999998776553 2456789999999 9999999999999999976652
Q ss_pred CceeeeceEEeecCCCceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCC------CCceeeeeee---------c
Q 022590 151 TKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGE------GTADILQKYP---------V 212 (294)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~---------~ 212 (294)
........-.+.|....|+ |..| ++.+..- ++|.+.-..+.... ....++..++ .
T Consensus 271 -----wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l 343 (445)
T KOG2139|consen 271 -----WTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL 343 (445)
T ss_pred -----ceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccc
Confidence 1122222334477777776 4443 3333333 33433322111100 0111111111 1
Q ss_pred CCCCeeEEEEcccCCcceEEEEcCC--------CeEEEEeccCCCceeeeeccccccCCCeEEEEEcc---CCCEEEEec
Q 022590 213 PECDIWFIKFSCDFHYNAAAIGNRE--------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY---DGSTILSCC 281 (294)
Q Consensus 213 ~~~~i~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~ 281 (294)
-.+++.+++|.|.| .+|++.... +.|.+||.+..-+.......... ...-..++|+| ++.+|..+=
T Consensus 344 ~cgeaq~lawDpsG--eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~-ge~P~~IsF~pl~n~g~lLsiaW 420 (445)
T KOG2139|consen 344 CCGEAQCLAWDPSG--EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIG-GEYPAYISFGPLKNEGRLLSIAW 420 (445)
T ss_pred ccCccceeeECCCC--CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccccc-CCCCceEEeeecccCCcEEEEEe
Confidence 13578899999999 577776543 34777888776433332111111 12244566665 566777776
Q ss_pred cCCcEEEEec
Q 022590 282 EDGAIWRWDA 291 (294)
Q Consensus 282 ~dg~i~vw~~ 291 (294)
..|.+.-|++
T Consensus 421 sTGriq~ypl 430 (445)
T KOG2139|consen 421 STGRIQRYPL 430 (445)
T ss_pred ccCceEeeee
Confidence 7777776654
No 220
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=5.9e-17 Score=113.04 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=126.0
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----------cccceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKD 75 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 75 (294)
.+.+.+.|..|.+.-....++++|-.+|.+.+||+.++ +.......|..+|.++.|.+ ....=++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcc
Confidence 34567888887654444556788889999999999987 33344557999999999988 55556788888
Q ss_pred CcEEEEEcCCC--ceE-EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCc
Q 022590 76 ESVRLWNVQTG--ICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 152 (294)
Q Consensus 76 g~i~vwd~~~~--~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (294)
..+..|++... .+. ..... -..-.|..+..-| ++..+|+++.|+.||||..++
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~--lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrt--------------------- 282 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEIT--LKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRT--------------------- 282 (323)
T ss_pred ccceeeeeccccCcccccceEE--ecCCCccceEEcc-CCcEEeecccCCcEEEEEecc---------------------
Confidence 89999988643 211 11111 1223588899999 999999999999999999999
Q ss_pred eeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecC
Q 022590 153 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP 192 (294)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~ 192 (294)
..|+..+..|.+.|.+++|+ .+.+++++.|++|.+|++
T Consensus 283 --l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 283 --LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 66788899999999999998 479999999999999986
No 221
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.70 E-value=7.4e-15 Score=104.25 Aligned_cols=249 Identities=14% Similarity=0.097 Sum_probs=168.5
Q ss_pred ceeEEEEEeecCCCc-eEEEEeecCCeEEEEEcCCccccceecccC------cceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590 9 ESFYTVSWACNVDGI-PFLVAGGINGIIRVIDVSNEKLHKSFVGHG------DSINEIRTQPLKPSLVVSASKDESVRLW 81 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~l~s~~~dg~i~vw 81 (294)
..++.+.|+.-+.+. ..++-+..+|.|.++..........+.+-. ....++.|++ .+..++++-.+|.+.+-
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~-~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST-SGTKIFVSDSRGSISGV 148 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec-cCceEEEEcCCCcEEEE
Confidence 457778888655443 256777788999999876554443333211 1245778888 77789999999999866
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
+...... ...+..++|..+++..+|+-.+++++.+|+.|+.+..||+|... .......
T Consensus 149 ~~t~~~l-e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---------------------~~i~~n~ 206 (339)
T KOG0280|consen 149 YETEMVL-EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---------------------TFIWHNS 206 (339)
T ss_pred ecceeee-eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---------------------ceeeecc
Confidence 6544333 22223337999999999998788999999999999999999421 1122234
Q ss_pred ecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590 162 SVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 238 (294)
Q Consensus 162 ~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 238 (294)
..|...|.++.-+ +.++++|+.|-.|++||.|+-.+ ++..-+. .+.|+.+..+|.-...+++++-.+
T Consensus 207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k--------Pl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~- 276 (339)
T KOG0280|consen 207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK--------PLFKAKV-GGGVWRIKHHPEIFHRLLAACMHN- 276 (339)
T ss_pred eeeecceEEEecCCCCCceEEEeccccceeeeehhcccC--------ccccCcc-ccceEEEEecchhhhHHHHHHHhc-
Confidence 5678888888776 56999999999999999996443 2222222 377999999998754445544444
Q ss_pred eEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEec-cCCcEE-EEe
Q 022590 239 KIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCC-EDGAIW-RWD 290 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~-vw~ 290 (294)
-.+|-+.+.........+. +..|.+-...-.|.....+|||++ .|+.++ +|-
T Consensus 277 G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 277 GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 4788888766433222222 345656666666755456788865 677755 774
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.2e-13 Score=110.94 Aligned_cols=211 Identities=12% Similarity=0.060 Sum_probs=134.2
Q ss_pred CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC---CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590 33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 109 (294)
Q Consensus 33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~ 109 (294)
..|.++|.+ +...+.+..|...+.+.+|+| +++.|+..+. +..|.+||+.+++... +. .+.+.+....|+|
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~---~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-VG---NFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-ee---cCCCcccCcEECC
Confidence 378888875 444466777888999999999 7787777653 4689999998887543 33 3566778899999
Q ss_pred CCCceE-EeeecCCc--EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-
Q 022590 110 SDIYRI-ASCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV- 183 (294)
Q Consensus 110 ~~~~~l-~~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~- 183 (294)
++..| ++.+.++. |.+||+.... ...+..+........|+ |+.++..+.
T Consensus 256 -DG~~la~~~~~~g~~~Iy~~d~~~~~------------------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 256 -DGRKVVMSLSQGGNTDIYTMDLRSGT------------------------TTRLTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred -CCCEEEEEEecCCCceEEEEECCCCc------------------------eEEccCCCCccCceeEcCCCCEEEEEECC
Confidence 66554 56666665 6666776521 12223333444455665 677766553
Q ss_pred CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-C--CeEEEEeccCCCceeeeeccc
Q 022590 184 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-E--GKIFVWELQSSPPVLIARLSH 258 (294)
Q Consensus 184 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~ 258 (294)
+| .|.++|+..++ ...+......+....|+|+++ .++.... . ..|.+||+..+.. ..+..
T Consensus 311 ~g~~~Iy~~d~~g~~----------~~~lt~~~~~~~~~~~SpdG~--~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~ 375 (435)
T PRK05137 311 SGSPQLYVMNADGSN----------PRRISFGGGRYSTPVWSPRGD--LIAFTKQGGGQFSIGVMKPDGSGE---RILTS 375 (435)
T ss_pred CCCCeEEEEECCCCC----------eEEeecCCCcccCeEECCCCC--EEEEEEcCCCceEEEEEECCCCce---EeccC
Confidence 33 68888876543 222222234456678999995 5554433 2 3688888765532 22221
Q ss_pred cccCCCeEEEEEccCCCEEEEeccC------CcEEEEecC
Q 022590 259 AQSKSPIRQTAMSYDGSTILSCCED------GAIWRWDAI 292 (294)
Q Consensus 259 ~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~vw~~~ 292 (294)
. ..+....|+|||+.|+..+.+ ..++++|+.
T Consensus 376 -~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 376 -G--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred -C--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 1 246778999999988765443 246777764
No 223
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4e-14 Score=105.23 Aligned_cols=158 Identities=20% Similarity=0.235 Sum_probs=112.6
Q ss_pred eEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEE
Q 022590 103 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 180 (294)
Q Consensus 103 ~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 180 (294)
..++|++ ++..+++++.||++|+|+... ...+.....|...|.++.|+ +..|++
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps-----------------------~~t~l~e~~~~~eV~DL~FS~dgk~las 203 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPS-----------------------MLTILEEIAHHAEVKDLDFSPDGKFLAS 203 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCc-----------------------chhhhhhHhhcCccccceeCCCCcEEEE
Confidence 6789998 889999999999999999776 34455667799999999997 789999
Q ss_pred eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccC---CcceEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590 181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF---HYNAAAIGNREGKIFVWELQSSPPVLIARLS 257 (294)
Q Consensus 181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 257 (294)
.+.| ..+||+.+++.......+ .........+.|+.++ ....++.-...+.|+.|++.....-...+..
T Consensus 204 ig~d-~~~VW~~~~g~~~a~~t~-------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~ 275 (398)
T KOG0771|consen 204 IGAD-SARVWSVNTGAALARKTP-------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR 275 (398)
T ss_pred ecCC-ceEEEEeccCchhhhcCC-------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh
Confidence 9999 999999998843211111 1112334556777766 2223334455667888777554321111111
Q ss_pred -ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 258 -HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 258 -~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
.......|++++.+++|+++|.|+.||.|-|++..
T Consensus 276 ~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~ 311 (398)
T KOG0771|consen 276 KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK 311 (398)
T ss_pred hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec
Confidence 11223579999999999999999999999999875
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=3.1e-14 Score=102.87 Aligned_cols=269 Identities=16% Similarity=0.262 Sum_probs=166.8
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 88 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 88 (294)
+.|.-+.|+ .|....|.....++.|.+|++...+-...+....+++.+++|+|++..+|.+...|-.|.+|.+.+.+.
T Consensus 49 dki~yieW~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 49 DKIVYIEWK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHhhheeee--ccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 356667887 667656777889999999999988888888888899999999994446777888899999999987766
Q ss_pred EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc---------cccc--cccceeecCCCCCCC--Cceee
Q 022590 89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE---------FWTY--VEKSFTWTDLPSKFP--TKYVQ 155 (294)
Q Consensus 89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~---------~~~~--~~~~~~~~~~~~~~~--~~~~~ 155 (294)
...-. .+..+..++|+| ++++.+.++.-.......+.. .... ....+.+.+...... .....
T Consensus 127 ~~~~~----pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 127 YLLPH----PKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred EEecc----cccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh
Confidence 54322 344578899999 888777665421111111110 0000 000111111110000 00000
Q ss_pred eceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCC---------------------------------
Q 022590 156 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG--------------------------------- 200 (294)
Q Consensus 156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~--------------------------------- 200 (294)
..+. .....-.+..+.|+ ++++++|+.|+.+|+.+--+.+....
T Consensus 202 ykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~ 280 (447)
T KOG4497|consen 202 YKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFT 280 (447)
T ss_pred heee-eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccC
Confidence 1111 11122457777786 78999999999988854332211000
Q ss_pred ----------C--------------CCceeeeeeecCCCCeeEEEEcccCCcceEEEEc--CCCeEEEEeccCCCceeee
Q 022590 201 ----------E--------------GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQSSPPVLIA 254 (294)
Q Consensus 201 ----------~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~ 254 (294)
. ...++....+.+...+.-++|++|. .++++-. .-+.+.+||++..+...+.
T Consensus 281 p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds--~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 281 PTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS--TYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred CCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc--eEEeeecCCCCceEEEEechhhhhhhhh
Confidence 0 0001112223445667789999998 4666643 3467999999887532222
Q ss_pred eccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 255 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 255 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
....+|+...|+|....|+.+.....+++|...
T Consensus 359 -----iQk~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 359 -----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -----hhccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 233679999999999999988878889999753
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=5.2e-13 Score=103.69 Aligned_cols=245 Identities=15% Similarity=0.179 Sum_probs=137.8
Q ss_pred ecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee-CCCcEEEEEcCCCceEEEeeccC
Q 022590 18 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAG 96 (294)
Q Consensus 18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~ 96 (294)
++|||+ ++++.+.||.|.++|+.+++.+++++.- .....+++++ ++++++++. .++.+.++|.++.+.++.+....
T Consensus 44 ~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 44 FSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp -TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred ecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 359999 8888899999999999999999999854 4568899999 778777664 68999999999999988876421
Q ss_pred ----CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecc
Q 022590 97 ----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 172 (294)
Q Consensus 97 ----~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 172 (294)
.....+.++..+|....++++.-..+.|.+.|........... ...........
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~----------------------i~~g~~~~D~~ 178 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT----------------------IKVGRFPHDGG 178 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE----------------------EE--TTEEEEE
T ss_pred ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee----------------------ecccccccccc
Confidence 1335678888888333344444555888888876632111110 00111122222
Q ss_pred ee--cceEEE-eeCCCeEEEecCCCCCCC----------------------------------------------CCCCC
Q 022590 173 WL--GDFILS-KSVDNEIVLWEPKMKEQS----------------------------------------------PGEGT 203 (294)
Q Consensus 173 ~~--~~~l~~-~~~d~~i~iwd~~~~~~~----------------------------------------------~~~~~ 203 (294)
|+ ++++++ ...+..|-++|..+.+.. .....
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 22 233222 122233333333322110 00113
Q ss_pred ceeeeeeecCCCCeeEEEEcccCCcceEEEE----cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590 204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS 279 (294)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 279 (294)
.+.+++++....+ ..+..+|+++ ++.+. ...+.|.++|.++.+ ....+.. .....+..+.|+++|+.+..
T Consensus 259 wkvv~~I~~~G~g-lFi~thP~s~--~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~-~~~~~~~h~ef~~dG~~v~v 332 (369)
T PF02239_consen 259 WKVVKTIPTQGGG-LFIKTHPDSR--YVWVDTFLNPDADTVQVIDKKTLK--VVKTITP-GPGKRVVHMEFNPDGKEVWV 332 (369)
T ss_dssp TSEEEEEE-SSSS---EE--TT-S--EEEEE-TT-SSHT-EEEEECCGTE--EEE-HHH-HHT--EEEEEE-TTSSEEEE
T ss_pred CeEEEEEECCCCc-ceeecCCCCc--cEEeeccCCCCCceEEEEECcCcc--eeEEEec-cCCCcEeccEECCCCCEEEE
Confidence 3356666665555 6778899984 66665 556899999999874 3333331 12234899999999997765
Q ss_pred ecc--CCcEEEEecCC
Q 022590 280 CCE--DGAIWRWDAIP 293 (294)
Q Consensus 280 ~~~--dg~i~vw~~~~ 293 (294)
+.. +|.|.|||.++
T Consensus 333 S~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 333 SVWDGNGAIVVYDAKT 348 (369)
T ss_dssp EEE--TTEEEEEETTT
T ss_pred EEecCCCEEEEEECCC
Confidence 543 34699999865
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.2e-13 Score=110.69 Aligned_cols=211 Identities=16% Similarity=0.123 Sum_probs=131.5
Q ss_pred CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---CcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590 33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 109 (294)
Q Consensus 33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~ 109 (294)
..|.+||.+. ...+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.+++.... . ...+...+..|+|
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~---~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELV-A---SFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEe-c---cCCCCccCceECC
Confidence 4688999854 44455666778899999999 88888877643 4699999988775433 2 2444556889999
Q ss_pred CCCceE-EeeecCC--cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-
Q 022590 110 SDIYRI-ASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV- 183 (294)
Q Consensus 110 ~~~~~l-~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~- 183 (294)
++..+ ++.+.+| .|++||+.++. ...+..+........|+ ++.++..+.
T Consensus 258 -DG~~l~~~~s~~g~~~Iy~~d~~~g~------------------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 258 -DGRRLALTLSRDGNPEIYVMDLGSRQ------------------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred -CCCEEEEEEeCCCCceEEEEECCCCC------------------------eEECccCCCCccceEECCCCCEEEEEECC
Confidence 66545 4556665 58888887632 11222333333455665 677776553
Q ss_pred CCe--EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-CC--eEEEEeccCCCceeeeeccc
Q 022590 184 DNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-EG--KIFVWELQSSPPVLIARLSH 258 (294)
Q Consensus 184 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~ 258 (294)
+|. |.++|+.+++. ..+..........+|+|+++ .++..+. ++ .|.+||+.+++.. .+..
T Consensus 313 ~g~~~iy~~dl~~g~~----------~~lt~~g~~~~~~~~SpDG~--~Ia~~~~~~~~~~I~v~d~~~g~~~---~Lt~ 377 (433)
T PRK04922 313 GGRPQIYRVAASGGSA----------ERLTFQGNYNARASVSPDGK--KIAMVHGSGGQYRIAVMDLSTGSVR---TLTP 377 (433)
T ss_pred CCCceEEEEECCCCCe----------EEeecCCCCccCEEECCCCC--EEEEEECCCCceeEEEEECCCCCeE---ECCC
Confidence 444 66666655431 11222223344689999995 5554432 22 6999999887533 2221
Q ss_pred cccCCCeEEEEEccCCCEEEEeccC---CcEEEEecC
Q 022590 259 AQSKSPIRQTAMSYDGSTILSCCED---GAIWRWDAI 292 (294)
Q Consensus 259 ~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vw~~~ 292 (294)
. .......|+|||++|+..+.+ +.|+++++.
T Consensus 378 ~---~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 378 G---SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred C---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 1 124457899999988776653 347777664
No 227
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.66 E-value=3e-14 Score=103.40 Aligned_cols=227 Identities=10% Similarity=0.122 Sum_probs=157.7
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC-Cccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
++++|.+.|++...- |... -+++.+.|.+++||--. .++.-..+. .-..+++++.+.+ +...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~--~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILI--PKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheec--cCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEE
Confidence 456888899988876 4444 59999999999999643 344333332 2357899999999 8889999999999988
Q ss_pred EEcCC----CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc-------------eeec
Q 022590 81 WNVQT----GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-------------FTWT 143 (294)
Q Consensus 81 wd~~~----~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------~~~~ 143 (294)
+.+.. ...++... .|...+..+-|+. ....+++.+.|..+.---.+.+....... ..+.
T Consensus 95 fs~sedfnkm~~~r~~~---~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv 170 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYL---AHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV 170 (404)
T ss_pred EEhhhhhhhcchhhhhh---hhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence 86643 22333333 6999999999997 77888888888766543333321111111 1111
Q ss_pred CCCCC-C----CCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590 144 DLPSK-F----PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 216 (294)
Q Consensus 144 ~~~~~-~----~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (294)
+.-.. . .......++..+.+|.+.+.+++|+ ...+++|..|..+.+||+-.... ...+...+...
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g--------~~~el~gh~~k 242 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG--------TAYELQGHNDK 242 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc--------eeeeeccchhh
Confidence 10000 0 0111234567888999999999998 67899999999999999976542 44556667777
Q ss_pred eeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590 217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQS 247 (294)
Q Consensus 217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 247 (294)
+..+...+.- ..+.+++.||.|.+|+++.
T Consensus 243 V~~l~~~~~t--~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 243 VQALSYAQHT--RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhhh--eeeeeccCCCeEEEEeccc
Confidence 7777666665 5789999999999999864
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=4.2e-13 Score=107.18 Aligned_cols=210 Identities=10% Similarity=0.021 Sum_probs=130.1
Q ss_pred eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee---CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590 34 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 110 (294)
Q Consensus 34 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 110 (294)
.|.++|.+.... +.+..+...+...+|+| +++.|+..+ .+..|.+|++.+++...... ..+.+....|+|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~----~~~~~~~~~~SP- 252 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVAS----FPRHNGAPAFSP- 252 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccC----CCCCcCCeEECC-
Confidence 788998865544 44555677899999999 777777553 24579999998876543322 333455789999
Q ss_pred CCceEEe-eecCC--cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCC-
Q 022590 111 DIYRIAS-CGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD- 184 (294)
Q Consensus 111 ~~~~l~~-~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d- 184 (294)
++..|+. .+.+| .|++||+.+.. ...+..+...+....|+ |+.|+..+.+
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~------------------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~ 308 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQ------------------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQA 308 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCC------------------------EEEccCCCCCcCceEECCCCCEEEEEeCCC
Confidence 7666654 34455 48888887631 11222233345566675 6777665543
Q ss_pred Ce--EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc-CC--CeEEEEeccCCCceeeeecccc
Q 022590 185 NE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-RE--GKIFVWELQSSPPVLIARLSHA 259 (294)
Q Consensus 185 ~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~ 259 (294)
+. |.++|+..++ ...+...........|+|+++ .++... .+ ..|.+||+.+++... +...
T Consensus 309 g~~~Iy~~d~~~g~----------~~~lt~~~~~~~~~~~SpDG~--~Ia~~~~~~g~~~I~~~dl~~g~~~~---Lt~~ 373 (429)
T PRK03629 309 GRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDGK--FMVMVSSNGGQQHIAKQDLATGGVQV---LTDT 373 (429)
T ss_pred CCceEEEEECCCCC----------eEEeecCCCCccCEEECCCCC--EEEEEEccCCCceEEEEECCCCCeEE---eCCC
Confidence 44 4444655442 122222333455688999995 554433 33 458889998875332 2211
Q ss_pred ccCCCeEEEEEccCCCEEEEeccCCc---EEEEecC
Q 022590 260 QSKSPIRQTAMSYDGSTILSCCEDGA---IWRWDAI 292 (294)
Q Consensus 260 ~~~~~v~~~~~s~~~~~l~s~~~dg~---i~vw~~~ 292 (294)
.......|+|||++|+.++.++. +.++++.
T Consensus 374 ---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 374 ---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred ---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 12346789999999999887765 6666653
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.3e-13 Score=110.23 Aligned_cols=207 Identities=15% Similarity=0.119 Sum_probs=126.2
Q ss_pred CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---CcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590 33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 109 (294)
Q Consensus 33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~ 109 (294)
..|.++|. ++...+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.+++.... . ...+.+....|+|
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~---~~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVV-A---NFKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEe-e---cCCCCccceEECC
Confidence 46777776 3444455666788999999999 77877766543 3599999988876443 3 2445567899999
Q ss_pred CCCceEE-eeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-CC
Q 022590 110 SDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DN 185 (294)
Q Consensus 110 ~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~ 185 (294)
++..|+ +.+.+|...+|.+.... .....+..+........|+ |+.++..+. ++
T Consensus 250 -DG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g 306 (427)
T PRK02889 250 -DGRTLAVALSRDGNSQIYTVNADG----------------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG 306 (427)
T ss_pred -CCCEEEEEEccCCCceEEEEECCC----------------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC
Confidence 665554 66788887777664311 0112222233334455665 777665553 45
Q ss_pred eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC---eEEEEeccCCCceeeeeccccccC
Q 022590 186 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARLSHAQSK 262 (294)
Q Consensus 186 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~ 262 (294)
...+|.+..... . ...+...........|+|+++ +++..+.++ .|.+||+.+++... +...
T Consensus 307 ~~~Iy~~~~~~g-----~---~~~lt~~g~~~~~~~~SpDG~--~Ia~~s~~~g~~~I~v~d~~~g~~~~---lt~~--- 370 (427)
T PRK02889 307 APQIYRMPASGG-----A---AQRVTFTGSYNTSPRISPDGK--LLAYISRVGGAFKLYVQDLATGQVTA---LTDT--- 370 (427)
T ss_pred CcEEEEEECCCC-----c---eEEEecCCCCcCceEECCCCC--EEEEEEccCCcEEEEEEECCCCCeEE---ccCC---
Confidence 666665532110 1 111112222234578999995 666554443 69999998875332 2211
Q ss_pred CCeEEEEEccCCCEEEEeccCC
Q 022590 263 SPIRQTAMSYDGSTILSCCEDG 284 (294)
Q Consensus 263 ~~v~~~~~s~~~~~l~s~~~dg 284 (294)
.......|+|||++|+.++.++
T Consensus 371 ~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 371 TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCccCceECCCCCEEEEEEecC
Confidence 2235679999999988776544
No 230
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.65 E-value=1.1e-14 Score=105.65 Aligned_cols=257 Identities=14% Similarity=0.171 Sum_probs=163.2
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-----ccceeccc------------CcceEEEEeCCCC-CceE
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGH------------GDSINEIRTQPLK-PSLV 69 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~h------------~~~v~~~~~~~~~-~~~l 69 (294)
.+-|.++.|. ..|. +||+|..+|.|.++.-+... ....++.| ...|..+.|.++. ...+
T Consensus 25 adiis~vef~--~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFD--HYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEee--cccc-eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 4567888887 8899 99999999999999754322 22233334 3468899998742 3467
Q ss_pred EEeeCCCcEEEEEcCCCceEE---------------Eeec------------------cCCCCCceeEEEEecCCCceEE
Q 022590 70 VSASKDESVRLWNVQTGICIL---------------IFAG------------------AGGHRNEVLSVDFHPSDIYRIA 116 (294)
Q Consensus 70 ~s~~~dg~i~vwd~~~~~~~~---------------~~~~------------------~~~~~~~v~~l~~~~~~~~~l~ 116 (294)
+..+.|.+|++|.+....... .++. ..+|.--|++|.++. +...++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~l 180 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFL 180 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEe
Confidence 777889999999875322111 0000 126788899999997 777777
Q ss_pred eeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC-----CCceeeccee---cceEEEeeCCCeEE
Q 022590 117 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-----SNYVDCNRWL---GDFILSKSVDNEIV 188 (294)
Q Consensus 117 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~---~~~l~~~~~d~~i~ 188 (294)
++ .|-.|.+|++.-.... ..+.....+ ..-|++..|+ .+.|+-.+..|+|+
T Consensus 181 SA-DdLRINLWnlei~d~s--------------------FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 181 SA-DDLRINLWNLEIIDQS--------------------FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ec-cceeeeeccccccCCc--------------------eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 65 4789999998862211 111122222 2346666675 67888889999999
Q ss_pred EecCCCCCCCC-----CCCCce--eeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC-Cceeeeeccc--
Q 022590 189 LWEPKMKEQSP-----GEGTAD--ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-PPVLIARLSH-- 258 (294)
Q Consensus 189 iwd~~~~~~~~-----~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~-- 258 (294)
+-|+|....-. ...+.. ....+..--..|..+.|+++| +++++-+. -+|++||++-. ++........
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--ryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--RYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--cEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence 99999542210 000000 011111122467789999999 57776543 67999999543 3322222110
Q ss_pred ---------cccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 259 ---------AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 259 ---------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
...--.--.++|+-++.+++||+.....++++..
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 0000112457899999999999999999999854
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=2.3e-14 Score=101.26 Aligned_cols=113 Identities=28% Similarity=0.468 Sum_probs=88.8
Q ss_pred cCceeEEEEEeecCCCceEE-EEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC---CCcEEEEE
Q 022590 7 KEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWN 82 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd 82 (294)
.+++|.+++|+ |+|+.++ +.|..++.|.+||++ ++.+..+. ...++.+.|+| ++++|++|+. .|.|.+||
T Consensus 58 ~~~~I~~~~Ws--P~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWS--PNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEEC--cCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEE
Confidence 44679999998 8888332 334567899999996 55555554 56788999999 8899998875 36799999
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec------CCcEEEEeccc
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM------DNTVKIWSMKE 131 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~------dg~i~~wd~~~ 131 (294)
+++.+.+.... |. .++.++|+| ++++|+++.. |+.++||+...
T Consensus 132 ~~~~~~i~~~~----~~-~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 132 VRKKKKISTFE----HS-DATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCCEEeeccc----cC-cEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 99888887765 44 478999999 8888888863 78899999875
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=4.4e-12 Score=98.56 Aligned_cols=194 Identities=14% Similarity=0.059 Sum_probs=122.4
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 104 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 104 (294)
++++-..+|.|.+.|..+.+.+.++......-..+.|+| +++++++++.||.|.++|+.+++.+..+. -.....+
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~----~G~~~~~ 82 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIK----VGGNPRG 82 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEe----cCCCcce
Confidence 445666789999999999999999986555445578999 88999999999999999999999999988 4556789
Q ss_pred EEEecCCCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cc-eEEE
Q 022590 105 VDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILS 180 (294)
Q Consensus 105 l~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~ 180 (294)
+++++ ++++++++ ..++.+.++|.++.+......... .........+.++..+ .. ++++
T Consensus 83 i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~----------------~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 83 IAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG----------------MPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp EEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--E----------------E-TTTS---EEEEEE-SSSSEEEEE
T ss_pred EEEcC-CCCEEEEEecCCCceeEeccccccceeeccccc----------------ccccccCCCceeEEecCCCCEEEEE
Confidence 99999 77766655 578999999998843221110000 0000022334444332 33 4555
Q ss_pred eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC
Q 022590 181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 249 (294)
Q Consensus 181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 249 (294)
.-..+.|-+.|....+. ................|+|+++ .++++...++.|-++|..+.+
T Consensus 146 lkd~~~I~vVdy~d~~~--------~~~~~i~~g~~~~D~~~dpdgr-y~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDPKN--------LKVTTIKVGRFPHDGGFDPDGR-YFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp ETTTTEEEEEETTTSSC--------EEEEEEE--TTEEEEEE-TTSS-EEEEEEGGGTEEEEEETTTTE
T ss_pred EccCCeEEEEEeccccc--------cceeeecccccccccccCcccc-eeeecccccceeEEEeeccce
Confidence 55568888888776531 2222222345567789999985 244555667788888887754
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.7e-13 Score=107.46 Aligned_cols=214 Identities=12% Similarity=0.063 Sum_probs=129.1
Q ss_pred cCceeEEEEEeecCCCceEEEEee---cCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEE-eeCCC--cEEE
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGG---INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVS-ASKDE--SVRL 80 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~dg--~i~v 80 (294)
+.+.+...+|+ |||+ .|+..+ .+..|.+|++.+++... +....+.+...+|+| +++.|+. .+.+| .|.+
T Consensus 197 ~~~~~~~p~wS--PDG~-~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 197 SPQPLMSPAWS--PDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred CCCceeeeEEc--CCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEEE
Confidence 44567788887 9998 666543 24579999998875432 222334456789999 7776664 34455 4888
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec-CCcEEEE--eccccccccccceeecCCCCCCCCceeeec
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIW--SMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
||+.+++...... +...+....|+| +++.|+..+. ++...+| |+....
T Consensus 272 ~d~~tg~~~~lt~----~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~------------------------ 322 (429)
T PRK03629 272 MDLASGQIRQVTD----GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA------------------------ 322 (429)
T ss_pred EECCCCCEEEccC----CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC------------------------
Confidence 9998877654433 445678899999 7776665554 4555555 444311
Q ss_pred eEEeecCCCceeeccee--cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590 158 VFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 232 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 232 (294)
...+...........|+ |++++..+.+ ..|.+||+.+++. ..+... .......|+|++. +++
T Consensus 323 ~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----------~~Lt~~-~~~~~p~~SpDG~--~i~ 389 (429)
T PRK03629 323 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----------QVLTDT-FLDETPSIAPNGT--MVI 389 (429)
T ss_pred eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe----------EEeCCC-CCCCCceECCCCC--EEE
Confidence 11111222233344454 7777665543 3588899876642 111111 1223568999994 666
Q ss_pred EEcCCCe---EEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590 233 IGNREGK---IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 272 (294)
Q Consensus 233 ~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 272 (294)
..+.++. +.++++.... ...+. .+.+.+...+|+|
T Consensus 390 ~~s~~~~~~~l~~~~~~G~~---~~~l~--~~~~~~~~p~Wsp 427 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTDGRF---KARLP--ATDGQVKFPAWSP 427 (429)
T ss_pred EEEcCCCceEEEEEECCCCC---eEECc--cCCCCcCCcccCC
Confidence 6665554 6677775543 23333 4556788888987
No 234
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1.5e-14 Score=115.07 Aligned_cols=247 Identities=13% Similarity=0.185 Sum_probs=179.0
Q ss_pred eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590 10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 86 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 86 (294)
.|-.+.|+++|.-. +-++......-.+|++... .....+.+|..+|+.+-|+|+....+++++.|..+..||+++.
T Consensus 69 ~vad~qws~h~a~~-~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKP-YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCc-eeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 46678999988877 6666666777889998542 3445667899999999999999999999999999999999876
Q ss_pred c-eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 87 I-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 87 ~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
. .+..+. .-......++|+-.+++.+| .+..+.|++||++.+ ..|+..+++|.
T Consensus 148 ~~p~ys~~---~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~g----------------------s~pl~s~K~~v 201 (1081)
T KOG0309|consen 148 HRPFYSTS---SWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKG----------------------STPLCSLKGHV 201 (1081)
T ss_pred Ccceeeee---cccccCceeeecccCcchhh-hccCCceEEEeccCC----------------------CcceEEecccc
Confidence 4 344444 34556788999985666454 556678999999985 45677888899
Q ss_pred Cceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 166 NYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 166 ~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
..|..+.|+ ...+.+++.|++++.||...... ..........++..-.+.|-+++.++.-.-.+..+.+
T Consensus 202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--------e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~ 273 (1081)
T KOG0309|consen 202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--------ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQ 273 (1081)
T ss_pred eeeehHHHhhhhhhhhcccCCCCceeeeccccccc--------ccceeccccCcceeccccccCceeEeccccCCeeeee
Confidence 999999997 56789999999999999876532 1112222345677777888877655544444445656
Q ss_pred EeccCCC--------ceeeeeccccccCCCeEEEEEccCC----------CEEEEeccCCcEEEEecCC
Q 022590 243 WELQSSP--------PVLIARLSHAQSKSPIRQTAMSYDG----------STILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 243 ~d~~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~i~vw~~~~ 293 (294)
++.++.. +..+..+. +|...|....|-..+ -.|+|=+.|..+++|-+..
T Consensus 274 ~~c~n~d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 274 LRCENSDLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccchhhhhccccCCcceeeec--CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 5554421 12333443 788878777665322 2689999999999998753
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=6.1e-13 Score=106.67 Aligned_cols=215 Identities=13% Similarity=0.063 Sum_probs=128.3
Q ss_pred ccCceeEEEEEeecCCCceEEEEeec---CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCC--cEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDE--SVR 79 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg--~i~ 79 (294)
.+.+.+.+.+|+ |||+ .|+..+. +..|.+||+.+++.. .+..+.+...+.+|+| +++.| ++.+.+| .|.
T Consensus 201 ~~~~~v~~p~wS--pDg~-~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 201 RSAEPILSPAWS--PDGK-KLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSP-DGRRLALTLSRDGNPEIY 275 (433)
T ss_pred cCCCccccccCC--CCCC-EEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECC-CCCEEEEEEeCCCCceEE
Confidence 455677888887 9998 7776653 346999999877653 3333445556889999 66655 4556665 589
Q ss_pred EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCCc--EEEEeccccccccccceeecCCCCCCCCceeee
Q 022590 80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 156 (294)
Q Consensus 80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
+||+.+++... +. .+.......+|+| ++..|+.++ .+|. |.++|+..+.
T Consensus 276 ~~d~~~g~~~~-lt---~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~----------------------- 327 (433)
T PRK04922 276 VMDLGSRQLTR-LT---NHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGS----------------------- 327 (433)
T ss_pred EEECCCCCeEE-Cc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC-----------------------
Confidence 99998877543 33 3555567789999 776666554 4555 5555554421
Q ss_pred ceEEeecCCCceeeccee--cceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590 157 PVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 231 (294)
Q Consensus 157 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 231 (294)
...+..+.......+|+ |++++..+.++ .|.+||+.+++. ..+.. ........|+|++. ++
T Consensus 328 -~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----------~~Lt~-~~~~~~p~~spdG~--~i 393 (433)
T PRK04922 328 -AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----------RTLTP-GSLDESPSFAPNGS--MV 393 (433)
T ss_pred -eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe----------EECCC-CCCCCCceECCCCC--EE
Confidence 01111112223344554 77777655433 699999876642 11111 11233568999995 44
Q ss_pred EEEcC---CCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590 232 AIGNR---EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 272 (294)
Q Consensus 232 ~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 272 (294)
+..+. .+.|.++++.... ...+. .+.+.+...+|+|
T Consensus 394 ~~~s~~~g~~~L~~~~~~g~~---~~~l~--~~~g~~~~p~wsp 432 (433)
T PRK04922 394 LYATREGGRGVLAAVSTDGRV---RQRLV--SADGEVREPAWSP 432 (433)
T ss_pred EEEEecCCceEEEEEECCCCc---eEEcc--cCCCCCCCCccCC
Confidence 44433 3457777775542 23332 2234567778876
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.60 E-value=3.6e-12 Score=102.42 Aligned_cols=203 Identities=16% Similarity=0.122 Sum_probs=126.4
Q ss_pred CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---CcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590 33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 109 (294)
Q Consensus 33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~ 109 (294)
..|.++|.+... .+.+..+...+...+|+| ++++|+.+..+ ..|.+||+.+++...... +...+.+++|+|
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~----~~~~~~~~~~sp 243 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVAS----FPGMNGAPAFSP 243 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeec----CCCCccceEECC
Confidence 368888875443 455656777899999999 88888776643 479999998886544332 556677899999
Q ss_pred CCCceE-EeeecCC--cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-
Q 022590 110 SDIYRI-ASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV- 183 (294)
Q Consensus 110 ~~~~~l-~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~- 183 (294)
++..| ++.+.++ .|++||+.+... ..+..+........|+ ++.|+..+.
T Consensus 244 -Dg~~l~~~~~~~~~~~i~~~d~~~~~~------------------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~ 298 (417)
T TIGR02800 244 -DGSKLAVSLSKDGNPDIYVMDLDGKQL------------------------TRLTNGPGIDTEPSWSPDGKSIAFTSDR 298 (417)
T ss_pred -CCCEEEEEECCCCCccEEEEECCCCCE------------------------EECCCCCCCCCCEEECCCCCEEEEEECC
Confidence 66545 4555554 488888776321 1111222222233443 666665544
Q ss_pred CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC---eEEEEeccCCCceeeeeccc
Q 022590 184 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARLSH 258 (294)
Q Consensus 184 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~ 258 (294)
++ .|.++|+.+++ ...+...........|+|+++ +++....++ .|.+||+.++... .+..
T Consensus 299 ~g~~~iy~~d~~~~~----------~~~l~~~~~~~~~~~~spdg~--~i~~~~~~~~~~~i~~~d~~~~~~~---~l~~ 363 (417)
T TIGR02800 299 GGSPQIYMMDADGGE----------VRRLTFRGGYNASPSWSPDGD--LIAFVHREGGGFNIAVMDLDGGGER---VLTD 363 (417)
T ss_pred CCCceEEEEECCCCC----------EEEeecCCCCccCeEECCCCC--EEEEEEccCCceEEEEEeCCCCCeE---EccC
Confidence 33 57777876543 222333344556788999984 666666554 7888998875422 2221
Q ss_pred cccCCCeEEEEEccCCCEEEEeccCC
Q 022590 259 AQSKSPIRQTAMSYDGSTILSCCEDG 284 (294)
Q Consensus 259 ~~~~~~v~~~~~s~~~~~l~s~~~dg 284 (294)
. .......|+|+|++|+..+.++
T Consensus 364 ~---~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 364 T---GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred C---CCCCCceECCCCCEEEEEEeCC
Confidence 1 1234568999999888876654
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=4.9e-13 Score=94.54 Aligned_cols=147 Identities=17% Similarity=0.316 Sum_probs=99.1
Q ss_pred EEEEeecCCCceEEEEeec---------CCeEEEEEcCC-ccccceecc-cCcceEEEEeCCCCCceEEE--eeCCCcEE
Q 022590 13 TVSWACNVDGIPFLVAGGI---------NGIIRVIDVSN-EKLHKSFVG-HGDSINEIRTQPLKPSLVVS--ASKDESVR 79 (294)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s--~~~dg~i~ 79 (294)
.+.|+ |+|+.+++.... -|...+|-++. +.....+.- ..++|.+++|+| +++.|+. |..++.|.
T Consensus 10 ~~~W~--~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQ--PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEec--ccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccE
Confidence 34554 899844444441 24455665532 334444443 345799999999 6666543 44678999
Q ss_pred EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC---CcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590 80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 156 (294)
Q Consensus 80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
+||++ ++.+..+. ...++.+.|+| ++++|++++.+ |.|.+||+++. .
T Consensus 87 lyd~~-~~~i~~~~-----~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~-----------------------~ 136 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-----TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK-----------------------K 136 (194)
T ss_pred EEcCc-ccEeEeec-----CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC-----------------------E
Confidence 99996 66665553 45778999999 88888888754 67999999972 2
Q ss_pred ceEEeecCCCceeeccee--cceEEEeeC------CCeEEEecCCC
Q 022590 157 PVFIASVHSNYVDCNRWL--GDFILSKSV------DNEIVLWEPKM 194 (294)
Q Consensus 157 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~------d~~i~iwd~~~ 194 (294)
.+.... | ..+..+.|+ |++|+++.. |..++||+...
T Consensus 137 ~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 137 KISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred Eeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 222222 3 346788887 889998875 67889999863
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.6e-12 Score=104.43 Aligned_cols=215 Identities=11% Similarity=0.039 Sum_probs=132.4
Q ss_pred ccCceeEEEEEeecCCCceEEEEeec---CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCc--EE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDES--VR 79 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~--i~ 79 (294)
.|.+.+...+|+ |||+ .|+..+. +..|.+||+.+++. ..+..+.+.+...+|+| +++.| ++.+.++. |.
T Consensus 199 ~~~~~v~~p~wS--pDG~-~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 199 DGSSLVLTPRFS--PNRQ-EITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred cCCCCeEeeEEC--CCCC-EEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC-CCCEEEEEEecCCCceEE
Confidence 566788889998 9998 6766553 46899999988765 34555667788999999 66655 56666665 66
Q ss_pred EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCC--cEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590 80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 156 (294)
Q Consensus 80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
+||+.+++... +. .+........|+| ++..|+..+ .+| .|.++|+....
T Consensus 274 ~~d~~~~~~~~-Lt---~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~----------------------- 325 (435)
T PRK05137 274 TMDLRSGTTTR-LT---DSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSN----------------------- 325 (435)
T ss_pred EEECCCCceEE-cc---CCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCC-----------------------
Confidence 77887776543 33 3555677899999 777666655 344 56777765421
Q ss_pred ceEEeecCCCceeeccee--cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590 157 PVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 231 (294)
Q Consensus 157 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 231 (294)
...+..+...+....|+ |+.++....+ ..|.+||+..+.. ..+.. ...+....|+|+++ .|
T Consensus 326 -~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----------~~lt~-~~~~~~p~~spDG~--~i 391 (435)
T PRK05137 326 -PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----------RILTS-GFLVEGPTWAPNGR--VI 391 (435)
T ss_pred -eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce----------EeccC-CCCCCCCeECCCCC--EE
Confidence 11111223334445564 7777765543 3688888754421 11111 12355678999995 44
Q ss_pred EE-EcCC-----CeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590 232 AI-GNRE-----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 273 (294)
Q Consensus 232 ~~-~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 273 (294)
+. .... ..++++|+...+. ..+.. .+.+...+|+|-
T Consensus 392 ~~~~~~~~~~~~~~L~~~dl~g~~~---~~l~~---~~~~~~p~Wsp~ 433 (435)
T PRK05137 392 MFFRQTPGSGGAPKLYTVDLTGRNE---REVPT---PGDASDPAWSPL 433 (435)
T ss_pred EEEEccCCCCCcceEEEEECCCCce---EEccC---CCCccCcccCCC
Confidence 43 3322 3578888876643 22221 233566778763
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.5e-14 Score=108.32 Aligned_cols=215 Identities=19% Similarity=0.186 Sum_probs=160.6
Q ss_pred cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcE
Q 022590 46 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTV 124 (294)
Q Consensus 46 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i 124 (294)
...+..|.+.|+.+.|.. .+..|++|+.|..|.+||...++....+.. +|...|..-.|-|.. ...+++++.||.+
T Consensus 135 ~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S--GH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFES--GHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCccccccc--ccccchhhhhccCCCCCcCceeccccCce
Confidence 456778999999999999 899999999999999999999998888776 899999998998853 4679999999999
Q ss_pred EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCC
Q 022590 125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGE 201 (294)
Q Consensus 125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~ 201 (294)
++=.+..... ......+..|.++|.-++.. ...|.+++.|+.+.-+|++.....
T Consensus 212 r~s~i~~t~~--------------------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa--- 268 (559)
T KOG1334|consen 212 RVSEILETGY--------------------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA--- 268 (559)
T ss_pred eeeeeccccc--------------------eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc---
Confidence 9877654211 12234556678887777664 778999999999999999877532
Q ss_pred CCceeeeeeecCCC---CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeee----c-c---ccccCCCeEEEEE
Q 022590 202 GTADILQKYPVPEC---DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR----L-S---HAQSKSPIRQTAM 270 (294)
Q Consensus 202 ~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~-~---~~~~~~~v~~~~~ 270 (294)
..+.....+.. ....++..|... ..+++|+.|-.+++||.+......... + + .......|++++|
T Consensus 269 ---~~~~cr~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y 344 (559)
T KOG1334|consen 269 ---EKFVCREADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY 344 (559)
T ss_pred ---ceeeeeccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe
Confidence 12222222222 567788888876 589999999999999987643221111 1 0 0123356999999
Q ss_pred ccCCCEEEEeccCCcEEEEe
Q 022590 271 SYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 271 s~~~~~l~s~~~dg~i~vw~ 290 (294)
+.++.-|.++..|-.|+++.
T Consensus 345 sh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 345 SHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred cCCccceeeeecccceEEec
Confidence 98877777777788899884
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=1.6e-13 Score=99.70 Aligned_cols=262 Identities=16% Similarity=0.240 Sum_probs=163.9
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc-----------------------------------cee-
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH-----------------------------------KSF- 49 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------------------------~~~- 49 (294)
+-+++|+.+.|....+.. .++..+.|.+|++|.+...... +.+
T Consensus 82 eieEKinkIrw~~~~n~a-~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~a 160 (433)
T KOG1354|consen 82 EIEEKINKIRWLDDGNLA-EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYA 160 (433)
T ss_pred hhhhhhhhceecCCCCcc-EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecc
Confidence 456789999998544444 7778888999999987542110 111
Q ss_pred cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC-----CceeEEEEecCCCceEEeeecCCcE
Q 022590 50 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-----NEVLSVDFHPSDIYRIASCGMDNTV 124 (294)
Q Consensus 50 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~~~~~dg~i 124 (294)
.+|+-.|+++.++. +...++++. |=.|.+|+++--..-..+...+++. .-|++..|+|...+.|+-.+..|+|
T Consensus 161 NaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 161 NAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred ccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 35788899999998 777777764 6789999987544333333222333 4589999999888999999999999
Q ss_pred EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC
Q 022590 125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG 202 (294)
Q Consensus 125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 202 (294)
++.|+|.........-.+..... .....-+..--..|..+.|+ |+++++-. --+|++||+.....
T Consensus 239 rLcDmR~~aLCd~hsKlfEeped-------p~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~----- 305 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPED-------PSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAK----- 305 (433)
T ss_pred EEeechhhhhhcchhhhhccccC-------CcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCC-----
Confidence 99999963322211111110000 00111122233567778886 77887743 36899999976543
Q ss_pred CceeeeeeecCCC---------------CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee-------------
Q 022590 203 TADILQKYPVPEC---------------DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA------------- 254 (294)
Q Consensus 203 ~~~~~~~~~~~~~---------------~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------- 254 (294)
++..++.|.. .-..++|+-++ .++++|+..+..++|++..+......
T Consensus 306 ---pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~--~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~ 380 (433)
T KOG1354|consen 306 ---PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND--SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV 380 (433)
T ss_pred ---cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc--ceEecccccceEEEecCCCCcceeecccccccCCccccc
Confidence 3444443321 12235666665 68999999999999996544211100
Q ss_pred -ecc---cccc-------------CCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590 255 -RLS---HAQS-------------KSPIRQTAMSYDGSTILSCCEDGAIWRW 289 (294)
Q Consensus 255 -~~~---~~~~-------------~~~v~~~~~s~~~~~l~s~~~dg~i~vw 289 (294)
+.. ..+. ...+...+|+|..+.+|.+..+. +++|
T Consensus 381 ~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 381 LKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 000 0000 12356678999999998886554 6665
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.58 E-value=9.9e-13 Score=102.03 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=147.6
Q ss_pred CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEe------c-------------CCCceEEeeecCCcEE
Q 022590 65 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH------P-------------SDIYRIASCGMDNTVK 125 (294)
Q Consensus 65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~------~-------------~~~~~l~~~~~dg~i~ 125 (294)
...++|....||.+++|+...++....|.....-.+...+..|. | .+...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 66789999999999999999998888777544444555666652 1 2445788888999999
Q ss_pred EEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCC
Q 022590 126 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT 203 (294)
Q Consensus 126 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 203 (294)
+|++..++. ........|.+.|.++.++ -..|.+++.|+.+..|+.....
T Consensus 84 ~ys~~~g~i---------------------t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~------- 135 (541)
T KOG4547|consen 84 LYSVAGGEI---------------------TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV------- 135 (541)
T ss_pred EEEecCCeE---------------------EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-------
Confidence 999987431 1233446799999999987 5589999999999999998664
Q ss_pred ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC-----CCEEE
Q 022590 204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-----GSTIL 278 (294)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~ 278 (294)
.++.+......+.+++.+||+ ..+++++ +.|++||+++.+ ....+. +|.++|++++|..+ |.+++
T Consensus 136 --~~~~~~~~~~~~~sl~is~D~--~~l~~as--~~ik~~~~~~ke--vv~~ft--gh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 136 --IIRIWKEQKPLVSSLCISPDG--KILLTAS--RQIKVLDIETKE--VVITFT--GHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred --eeeeeccCCCccceEEEcCCC--CEEEecc--ceEEEEEccCce--EEEEec--CCCcceEEEEEEEeccccccceee
Confidence 677777777888999999998 4777775 689999999986 444554 99999999999877 66666
Q ss_pred E-eccCCcEEEEecC
Q 022590 279 S-CCEDGAIWRWDAI 292 (294)
Q Consensus 279 s-~~~dg~i~vw~~~ 292 (294)
+ ...+..+.+|-++
T Consensus 206 ssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 206 SSAAAERGITVWVVE 220 (541)
T ss_pred eccccccceeEEEEE
Confidence 5 4556668888664
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=1.6e-13 Score=112.84 Aligned_cols=187 Identities=16% Similarity=0.207 Sum_probs=146.1
Q ss_pred CCceEEEEeecCCeEEEEEcCCccccceecccCcc----eEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC
Q 022590 21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS----INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 96 (294)
Q Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 96 (294)
+.. .++.++.+..+.+||...+.....+...... ..-+-+++ +.-++++|+.-+.|.+|+....+....+.
T Consensus 98 e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~--- 172 (967)
T KOG0974|consen 98 ENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLK--- 172 (967)
T ss_pred hcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceec---
Confidence 344 7888888999999999888776666533221 12233455 66789999999999999987433333345
Q ss_pred CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc
Q 022590 97 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 176 (294)
Q Consensus 97 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 176 (294)
+|.+.|.++.|+. ++.++++.+.|.++++|++.+.+ .......+|+..+..+.|..+
T Consensus 173 GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~----------------------~~~~~~fgHsaRvw~~~~~~n 229 (967)
T KOG0974|consen 173 GHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSRE----------------------VLGCTGFGHSARVWACCFLPN 229 (967)
T ss_pred ccCCceEEEEEcc-CCcEEEEEecCcceeeeeccccc----------------------ccCcccccccceeEEEEeccc
Confidence 7999999999998 99999999999999999999832 122466789999999999988
Q ss_pred eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC-CCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590 177 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 247 (294)
Q Consensus 177 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 247 (294)
.+++++.|.+.++|+....+ +..+..|. ..+..++..++. ..+++++.||.+++|++..
T Consensus 230 ~i~t~gedctcrvW~~~~~~----------l~~y~~h~g~~iw~~~~~~~~--~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQ----------LEVYDEHSGKGIWKIAVPIGV--IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEeccceEEEEEecccce----------ehhhhhhhhcceeEEEEcCCc--eEEEeeccCcchhhhhhhc
Confidence 99999999999999765432 33444443 568888888887 5899999999999999865
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=2.8e-10 Score=88.65 Aligned_cols=245 Identities=15% Similarity=0.109 Sum_probs=146.4
Q ss_pred cCCCceEEEEeec----CCeEEEEEcCCc--c--ccceecccCcceEEEEeCCCCCceEEEee-CCCcEEEEEcCC-Cce
Q 022590 19 NVDGIPFLVAGGI----NGIIRVIDVSNE--K--LHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQT-GIC 88 (294)
Q Consensus 19 ~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~ 88 (294)
+|+++ +|.+... +|.|..|.+... + .+.+..........++++| ++++|+++. .+|.|.++++.. +..
T Consensus 45 ~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l 122 (345)
T PF10282_consen 45 SPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSL 122 (345)
T ss_dssp -TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEE
T ss_pred EeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCccc
Confidence 48888 7777765 579999988764 2 2333333345567799999 777777776 589999999986 333
Q ss_pred EEEeecc----------CCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 89 ILIFAGA----------GGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 89 ~~~~~~~----------~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
....... ........++.|+| +++++++.. ....|.+|++........ ..
T Consensus 123 ~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~------------------~~ 183 (345)
T PF10282_consen 123 GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLT------------------PV 183 (345)
T ss_dssp EEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEE------------------EE
T ss_pred ceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEE------------------Ee
Confidence 2221100 01234578999999 766665543 345799999986321110 00
Q ss_pred eEEeecCCCceeeccee--cceEEE-eeCCCeEEEecCCCCCCCCCCCCceeeeeeecC------CCCeeEEEEcccCCc
Q 022590 158 VFIASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP------ECDIWFIKFSCDFHY 228 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ 228 (294)
..........-+.+.|+ ++++++ ...++.|.++++..... ....++..... ......+.++|+++
T Consensus 184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~- 257 (345)
T PF10282_consen 184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG-----SLTEIQTISTLPEGFTGENAPAEIAISPDGR- 257 (345)
T ss_dssp EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESCETTSCSSSSEEEEEE-TTSS-
T ss_pred eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC-----ceeEEEEeeeccccccccCCceeEEEecCCC-
Confidence 11111233445566665 555544 45678899998873221 11222222211 12577899999996
Q ss_pred ceEEEEcCCCeEEEEeccC--CCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEecC
Q 022590 229 NAAAIGNREGKIFVWELQS--SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAI 292 (294)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~ 292 (294)
.+.++....+.|.+|++.. ++........ ......+.++++|+|++|+++. .++.|.+|++.
T Consensus 258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~--~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVP--TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEECTTTEEEEEEECTTTTTEEEEEEEE--ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEeccCCEEEEEEEecCCCceEEEEEEe--CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 2444455678899999943 3433333333 2234579999999999999876 56689999875
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.8e-12 Score=103.74 Aligned_cols=218 Identities=13% Similarity=0.096 Sum_probs=127.3
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecC---CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEE-EeeCCCcEEEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLW 81 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~i~vw 81 (294)
.+.+.+.+.+|+ |||+ .|+..+.+ ..|.+||+.+++... +....+.+...+|+| +++.|+ +.+.+|...+|
T Consensus 193 ~~~~~v~~p~wS--PDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 193 SSPEPIISPAWS--PDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIY 267 (427)
T ss_pred cCCCCcccceEc--CCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEEEEEEccCCCceEE
Confidence 456778888897 9998 67666532 469999998886533 333445667899999 666555 66778887777
Q ss_pred Ec--CCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 82 NV--QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 82 d~--~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
.+ ..+. ...+. .+........|+| ++..|+..+ .+|...+|.+..... . .
T Consensus 268 ~~d~~~~~-~~~lt---~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g--------------------~--~ 320 (427)
T PRK02889 268 TVNADGSG-LRRLT---QSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGG--------------------A--A 320 (427)
T ss_pred EEECCCCC-cEECC---CCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCC--------------------c--e
Confidence 65 3333 34443 3555567788999 776665544 456777776643110 0 0
Q ss_pred EEeecCCCceeecce--ecceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590 159 FIASVHSNYVDCNRW--LGDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 233 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~--~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 233 (294)
..+...........| +|++++..+.++ .|.+||+.+++. ..+.. ........|+|+++ .|+.
T Consensus 321 ~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----------~~lt~-~~~~~~p~~spdg~--~l~~ 387 (427)
T PRK02889 321 QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----------TALTD-TTRDESPSFAPNGR--YILY 387 (427)
T ss_pred EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----------EEccC-CCCccCceECCCCC--EEEE
Confidence 001111112223344 488887766554 699999987642 11111 12234678999995 4444
Q ss_pred Ec-CCCe--EEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590 234 GN-REGK--IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 273 (294)
Q Consensus 234 ~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 273 (294)
.+ ..|. +.+.++... ....+. .+.+.+...+|+|-
T Consensus 388 ~~~~~g~~~l~~~~~~g~---~~~~l~--~~~g~~~~p~wsp~ 425 (427)
T PRK02889 388 ATQQGGRSVLAAVSSDGR---IKQRLS--VQGGDVREPSWGPF 425 (427)
T ss_pred EEecCCCEEEEEEECCCC---ceEEee--cCCCCCCCCccCCC
Confidence 43 3433 555555332 222222 23355677788874
No 245
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=5.4e-14 Score=121.67 Aligned_cols=190 Identities=13% Similarity=0.312 Sum_probs=154.4
Q ss_pred cCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 52 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 52 h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
+-..|.++.-+| ...+.++|+.||.+++|....++.+..+... -...|+.+.|+. .|+.+..+..||.+.+|....
T Consensus 2207 ~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred ccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeecc--Ccchhhhhhhcc-cCCceeeeccCCceeecccCC
Confidence 445678888888 6778999999999999999999999888864 338899999998 777799999999999999883
Q ss_pred cccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEee---CCCeEEEecCCCCCCCCCCCCceeee
Q 022590 132 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS---VDNEIVLWEPKMKEQSPGEGTADILQ 208 (294)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~ 208 (294)
.+......|........|-+..+++++ .++.+.+||..... ...++.
T Consensus 2283 ------------------------k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~------~~s~v~ 2332 (2439)
T KOG1064|consen 2283 ------------------------KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPP------MNSLVH 2332 (2439)
T ss_pred ------------------------cceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCc------ccceee
Confidence 467788899999999999888888765 46789999986543 122333
Q ss_pred eeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEE
Q 022590 209 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 288 (294)
Q Consensus 209 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 288 (294)
..|...++++++.|.. ..|++|+.+|.|++||++..+. ...++ . +. ...++++|+..|.++|
T Consensus 2333 --~~H~~gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql--~h~~~-------~----~~-~~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQL--RHTFQ-------A----LD-TREYFVTGSSEGNIKI 2394 (2439)
T ss_pred --eecCCCceEEEEcCcc--eEEEecCCcCcEEEeehHHHHH--HHHhh-------h----hh-hhheeeccCcccceEE
Confidence 6788899999999998 6999999999999999987652 22221 1 44 5679999999999999
Q ss_pred EecCC
Q 022590 289 WDAIP 293 (294)
Q Consensus 289 w~~~~ 293 (294)
|++..
T Consensus 2395 w~~s~ 2399 (2439)
T KOG1064|consen 2395 WRLSE 2399 (2439)
T ss_pred EEccc
Confidence 99864
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.55 E-value=7e-12 Score=97.43 Aligned_cols=190 Identities=19% Similarity=0.204 Sum_probs=147.2
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecc---cCcceEEEEe------CC-------------CCCceEEEeeCCCc
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIRT------QP-------------LKPSLVVSASKDES 77 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---h~~~v~~~~~------~~-------------~~~~~l~s~~~dg~ 77 (294)
|... ++|....||.+++|+..+++....+.. -.+..++..| +| .+...++-|...|.
T Consensus 3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhh-eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4455 999999999999999999887766642 1233444444 22 14457888999999
Q ss_pred EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
|.+|++..++....+..- .|.+.|.++.++. +-..|.+++.|+.+..|+... ...
T Consensus 82 v~~ys~~~g~it~~~st~-~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~-----------------------~~~ 136 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTD-KHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE-----------------------KVI 136 (541)
T ss_pred EEEEEecCCeEEEEEecC-CCCCcceeeeccc-ccCceEecCCceeEEEEeccc-----------------------cee
Confidence 999999999988887632 6999999999987 777899999999999999998 444
Q ss_pred eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEccc-----CCcce
Q 022590 158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD-----FHYNA 230 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~ 230 (294)
.......+..+.+++.. +..+++++ +.|++||+++.+ .+..+++|..++.++.|... |+ .+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke---------vv~~ftgh~s~v~t~~f~~~~~g~~G~-~v 204 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE---------VVITFTGHGSPVRTLSFTTLIDGIIGK-YV 204 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce---------EEEEecCCCcceEEEEEEEeccccccc-ee
Confidence 55666666777777776 45777765 689999999776 79999999999999999887 43 34
Q ss_pred EEEEcCCCeEEEEeccC
Q 022590 231 AAIGNREGKIFVWELQS 247 (294)
Q Consensus 231 l~~~~~dg~i~i~d~~~ 247 (294)
|.+...+..+.+|-+..
T Consensus 205 Lssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAERGITVWVVEK 221 (541)
T ss_pred eeccccccceeEEEEEc
Confidence 55555666788887765
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=1.1e-12 Score=108.16 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=149.4
Q ss_pred cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCce-----eEEEEecCCCceEEeeecCCcEEEEe
Q 022590 54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV-----LSVDFHPSDIYRIASCGMDNTVKIWS 128 (294)
Q Consensus 54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~l~~~~~dg~i~~wd 128 (294)
+.|....+.. +...++.++.+..+.+||...+.....+. +.... .-+-+++ +.-++++|+.-+.|.+|+
T Consensus 88 ~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~----~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 88 DWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQ----SDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWK 161 (967)
T ss_pred ccccccchhh-hcceEEEEEcCceEEEEecccCceehhcC----CCceEEEEeEEEEeccC-cEEEEEeccccccEEEEe
Confidence 3444444555 56788888999999999998877766665 33322 1223455 677899999999999999
Q ss_pred ccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCcee
Q 022590 129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI 206 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 206 (294)
.... ..+ ..+.+|++.|..+.+ +|.++++.++|+.+|+|++.+.+..
T Consensus 162 ~~~d----------------------n~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~-------- 210 (967)
T KOG0974|consen 162 PHED----------------------NKP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL-------- 210 (967)
T ss_pred cccc----------------------CCc-ceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc--------
Confidence 8841 122 278899999999999 4999999999999999999987642
Q ss_pred eeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcE
Q 022590 207 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 286 (294)
Q Consensus 207 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 286 (294)
....-.|..+++.+.|.|+ .++++++|-+.++|+.+..+.. .+. ......|..++..++...++|++.||.+
T Consensus 211 ~~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~---~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 211 GCTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLE---VYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred CcccccccceeEEEEeccc----eeEEeccceEEEEEecccceeh---hhh-hhhhcceeEEEEcCCceEEEeeccCcch
Confidence 2344567889999999987 5999999999999977665422 222 1223569999999999999999999999
Q ss_pred EEEecC
Q 022590 287 WRWDAI 292 (294)
Q Consensus 287 ~vw~~~ 292 (294)
++|++.
T Consensus 283 k~~~l~ 288 (967)
T KOG0974|consen 283 KLWDLN 288 (967)
T ss_pred hhhhhh
Confidence 999975
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.52 E-value=1.1e-12 Score=93.44 Aligned_cols=118 Identities=16% Similarity=0.246 Sum_probs=95.6
Q ss_pred EEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590 13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL 90 (294)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 90 (294)
+++..+++.+. -++++-.+|.+.+-+..... .++.++.|.-+.....|+..+.+++++|+.|+.+..||++..+ ..
T Consensus 124 ~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF 201 (339)
T ss_pred eeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce
Confidence 44444447777 79999999999966655543 3458899999999999998888999999999999999998433 22
Q ss_pred EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccc
Q 022590 91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 132 (294)
Q Consensus 91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~ 132 (294)
.+...+-|...|.+|.-+|..+.++++|+.|-.|++||.|..
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 333333699999999999988999999999999999999973
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=2.3e-12 Score=93.83 Aligned_cols=221 Identities=15% Similarity=0.226 Sum_probs=155.1
Q ss_pred cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc-CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC
Q 022590 44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV-QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 122 (294)
Q Consensus 44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg 122 (294)
..++.++||.+.|++...-| ...-+++.+.|.+++||-- +.++.-..+.. ....+++++.+.+ +...|++|-.+|
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~-e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVS-ESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeec-cceEEEEEEecc
Confidence 45667889999999988888 7778999999999999954 34554444432 2456899999998 888899999999
Q ss_pred cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCC--
Q 022590 123 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS-- 198 (294)
Q Consensus 123 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~-- 198 (294)
++.-+.+...-.. .........|...+..+.|+ ..++++.+.|..+.---.+.+...
T Consensus 91 tvtefs~sedfnk-------------------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~ 151 (404)
T KOG1409|consen 91 TVTEFALSEDFNK-------------------MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGG 151 (404)
T ss_pred eEEEEEhhhhhhh-------------------cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccc
Confidence 9998877651110 11122334455555555554 444555544443322222111110
Q ss_pred ------------------------------CCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590 199 ------------------------------PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248 (294)
Q Consensus 199 ------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 248 (294)
.......++..+..+...+.+++|.+.. ..|.+|..|..+.+||+-..
T Consensus 152 Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~--~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 152 YNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ--RLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred eEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC--cEEEeccccCceEEEeccCC
Confidence 0011334667788888999999999988 69999999999999999776
Q ss_pred CceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
+.. ... ..+|...|..+...+--+.|++++.||.|-+|+.+
T Consensus 230 ~g~-~~e--l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 230 KGT-AYE--LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cce-eee--eccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 432 222 23777889999998888999999999999999986
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.2e-12 Score=100.04 Aligned_cols=189 Identities=13% Similarity=0.222 Sum_probs=140.0
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC---
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG--- 96 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--- 96 (294)
|... +++.| ....|+=++++.|+.+..+....+.++++..++ ...+|++|+.+|.|..||.+....+..+....
T Consensus 144 ~scD-ly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~ 220 (703)
T KOG2321|consen 144 PSCD-LYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN 220 (703)
T ss_pred CCcc-EEEee-cCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccC
Confidence 4444 44444 445788889999999999988889999999999 77899999999999999999877666654311
Q ss_pred CCCC-----ceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE-EeecCCCceee
Q 022590 97 GHRN-----EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSNYVDC 170 (294)
Q Consensus 97 ~~~~-----~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~ 170 (294)
.|.+ .|+++.|+. ++-.+++|..+|.+.+||++.. .|+. .-....-+|..
T Consensus 221 s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~-----------------------~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRAS-----------------------KPLLVKDHGYELPIKK 276 (703)
T ss_pred CCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccC-----------------------CceeecccCCccceee
Confidence 2333 399999996 7999999999999999999983 2322 22334456777
Q ss_pred ccee----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590 171 NRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 246 (294)
Q Consensus 171 ~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 246 (294)
+.|. ++.+++ .....++|||-.+++. ..... +...++.+++-|++ .+++++-+++.+..|=+.
T Consensus 277 l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~---------~asiE-pt~~lND~C~~p~s--Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVS-MDKRILKIWDECTGKP---------MASIE-PTSDLNDFCFVPGS--GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ecccccCCCceEEe-cchHHhhhcccccCCc---------eeecc-ccCCcCceeeecCC--ceEEEecCCCcceeEEcc
Confidence 7774 334444 5567899999998863 22222 34558888999988 588889888888887765
Q ss_pred CC
Q 022590 247 SS 248 (294)
Q Consensus 247 ~~ 248 (294)
..
T Consensus 344 ~L 345 (703)
T KOG2321|consen 344 SL 345 (703)
T ss_pred cc
Confidence 53
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=7.2e-11 Score=95.07 Aligned_cols=209 Identities=12% Similarity=0.104 Sum_probs=123.5
Q ss_pred eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590 34 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 110 (294)
Q Consensus 34 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 110 (294)
.|.++|.+.+. .+.+..+...+...+|+| +++.|+..+.+ ..|.+||+.+++...... ..+.+....|+|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~----~~g~~~~~~~Sp- 252 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITN----FEGLNGAPAWSP- 252 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccC----CCCCcCCeEECC-
Confidence 47777876544 455556778899999999 77777665543 368899998886544322 334456789999
Q ss_pred CCceEE-eeecCC--cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-C
Q 022590 111 DIYRIA-SCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-D 184 (294)
Q Consensus 111 ~~~~l~-~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d 184 (294)
++..|+ +...+| .|.++|+.+.. ...+..+........|+ ++.++..+. +
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~------------------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~ 308 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQ------------------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRG 308 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC------------------------eEEcccCCCCcCCeEECCCCCEEEEEECCC
Confidence 666555 555555 57777887632 11122233333444554 666655443 3
Q ss_pred C--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc-CCC--eEEEEeccCCCceeeeecccc
Q 022590 185 N--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REG--KIFVWELQSSPPVLIARLSHA 259 (294)
Q Consensus 185 ~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~ 259 (294)
+ .|.++|+.+++. ..+...........|+|+++ .++... .++ .|.++|+.+++.... ...
T Consensus 309 g~~~iy~~d~~~g~~----------~~lt~~~~~~~~~~~Spdg~--~i~~~~~~~~~~~l~~~dl~tg~~~~l---t~~ 373 (430)
T PRK00178 309 GKPQIYKVNVNGGRA----------ERVTFVGNYNARPRLSADGK--TLVMVHRQDGNFHVAAQDLQRGSVRIL---TDT 373 (430)
T ss_pred CCceEEEEECCCCCE----------EEeecCCCCccceEECCCCC--EEEEEEccCCceEEEEEECCCCCEEEc---cCC
Confidence 3 577777765531 11111122233568999995 454443 333 588899888753322 211
Q ss_pred ccCCCeEEEEEccCCCEEEEeccC-C--cEEEEec
Q 022590 260 QSKSPIRQTAMSYDGSTILSCCED-G--AIWRWDA 291 (294)
Q Consensus 260 ~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~vw~~ 291 (294)
. ......|+|+|+.++..+.+ | .|+++++
T Consensus 374 ~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 374 S---LDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred C---CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1 12245899999988876543 3 3555554
No 252
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.49 E-value=3.3e-11 Score=85.12 Aligned_cols=238 Identities=12% Similarity=0.038 Sum_probs=156.5
Q ss_pred EEEEeecCCeEEEEEcCCccc-cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590 25 FLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 103 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 103 (294)
+||.|+..|...+|...+.+. .+....|...|+-+.-..+...-+..++.|.++++.+++-+........ ..-.+.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~---~~~~~n 162 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN---QNLTQN 162 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec---ccccee
Confidence 799999999999999986543 2333334443332221111233466678899999998865544333321 112388
Q ss_pred EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEe
Q 022590 104 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 181 (294)
Q Consensus 104 ~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~ 181 (294)
++++++ ++.++++.+....|..|.+......... .......+.-.+.+|+ ...+|++
T Consensus 163 s~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~--------------------~~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 163 SLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIEN--------------------IYEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred eeEEcC-CCceEEEecCCCcceEEEeCCccceeee--------------------eEecccCCCceeeeeccCcceEEEE
Confidence 999999 9999999999999999999873221111 1222233344455665 6689999
Q ss_pred eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc---
Q 022590 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH--- 258 (294)
Q Consensus 182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--- 258 (294)
..||++.|||+|....+. .......+.|.+.+..+.|++.+...+|+..-.-+.+.+.|+++........+..
T Consensus 222 ~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~ 297 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE 297 (344)
T ss_pred ecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccc
Confidence 999999999999765321 1223344567899999999998876777777778899999999987555444431
Q ss_pred cccC-CCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 259 AQSK-SPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 259 ~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
..|. ..|..-.|+.++.-+.+.+++. +.=|++
T Consensus 298 ~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni 330 (344)
T KOG4532|consen 298 RKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNI 330 (344)
T ss_pred ccccccccccccccCCCcccccccchh-hheeec
Confidence 1222 3377788888777666665553 334443
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=3e-11 Score=97.06 Aligned_cols=194 Identities=15% Similarity=0.100 Sum_probs=116.4
Q ss_pred cCceeEEEEEeecCCCceEEEEeecC---CeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCC--cEEE
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDE--SVRL 80 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg--~i~v 80 (294)
+...+...+|+ |+|+ +|+....+ ..|++||+.+++... +..+...+.+++|+| +++.| ++.+.++ .|.+
T Consensus 188 ~~~~~~~p~~S--pdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 188 SREPILSPAWS--PDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred CCCceecccCC--CCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEEEEEECCCCCccEEE
Confidence 44567777887 9999 77766543 479999998876533 334556677899999 66655 4555554 5888
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCC--cEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
||+.+++.... . .+........|+| ++..|+..+ .++ .|.++|+....
T Consensus 263 ~d~~~~~~~~l-~---~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~------------------------ 313 (417)
T TIGR02800 263 MDLDGKQLTRL-T---NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE------------------------ 313 (417)
T ss_pred EECCCCCEEEC-C---CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC------------------------
Confidence 89887764433 2 2444556778999 766665544 344 46666665421
Q ss_pred eEEeecCCCceeeccee--cceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590 158 VFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 232 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 232 (294)
...+..+........|+ +++++.++.++ .|.+||+.++.. ..+... .......|+|++. .|+
T Consensus 314 ~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----------~~l~~~-~~~~~p~~spdg~--~l~ 380 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----------RVLTDT-GLDESPSFAPNGR--MIL 380 (417)
T ss_pred EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----------EEccCC-CCCCCceECCCCC--EEE
Confidence 11122233344455554 77888777665 788999876431 111111 1223457999985 555
Q ss_pred EEcCCC---eEEEEeccC
Q 022590 233 IGNREG---KIFVWELQS 247 (294)
Q Consensus 233 ~~~~dg---~i~i~d~~~ 247 (294)
..+.++ .+++.+...
T Consensus 381 ~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 381 YATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEeCCCcEEEEEEECCC
Confidence 544433 355555443
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=1.7e-09 Score=82.57 Aligned_cols=243 Identities=10% Similarity=0.002 Sum_probs=141.7
Q ss_pred ecCCCceEEEEee---------cCCeEEEEEcCCccccceecccCc-------ceEEEEeCCCCCceEEEee-C-CCcEE
Q 022590 18 CNVDGIPFLVAGG---------INGIIRVIDVSNEKLHKSFVGHGD-------SINEIRTQPLKPSLVVSAS-K-DESVR 79 (294)
Q Consensus 18 ~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~~-~-dg~i~ 79 (294)
.+|||+.+.++.+ .+..|.+||..+.+.+..+....+ ....++++| ++++|+... . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 4599984444555 578999999999999888764222 234789999 888777665 3 78999
Q ss_pred EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590 80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 159 (294)
Q Consensus 80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (294)
+.|+.+++.+..+.. .+...-...++ + . +.+-+.||......+.......... .++.
T Consensus 132 VvD~~~~kvv~ei~v----p~~~~vy~t~e-~-~-~~~~~~Dg~~~~v~~d~~g~~~~~~----------------~~vf 188 (352)
T TIGR02658 132 VVDLEGKAFVRMMDV----PDCYHIFPTAN-D-T-FFMHCRDGSLAKVGYGTKGNPKIKP----------------TEVF 188 (352)
T ss_pred EEECCCCcEEEEEeC----CCCcEEEEecC-C-c-cEEEeecCceEEEEecCCCceEEee----------------eeee
Confidence 999999999988873 22222222221 2 2 2233456666555444321111000 0000
Q ss_pred Ee---ecCCCceeecce-ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee----ecCCCCeeEEEEcccCCcceE
Q 022590 160 IA---SVHSNYVDCNRW-LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAA 231 (294)
Q Consensus 160 ~~---~~~~~~i~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l 231 (294)
.- .....+ .... ++.++.+... |.|.+.|+........ .....+..- ......+..++++++++..++
T Consensus 189 ~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV 264 (352)
T TIGR02658 189 HPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL 264 (352)
T ss_pred cCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceec-ceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence 00 000111 1111 3666666555 9999999765432111 011111100 112334455999999963333
Q ss_pred EEE--------cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEec-cCCcEEEEecCC
Q 022590 232 AIG--------NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCC-EDGAIWRWDAIP 293 (294)
Q Consensus 232 ~~~--------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~vw~~~~ 293 (294)
+.- ...+.|.++|..+.+........ ..+..++++||++ +|++.. .++.|.+.|..+
T Consensus 265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EecCCccccccCCCCEEEEEECCCCeEEEEEeCC-----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 221 22358999999888643333322 4688999999999 887666 678899999864
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=5.4e-10 Score=89.92 Aligned_cols=210 Identities=10% Similarity=0.073 Sum_probs=118.8
Q ss_pred eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC-CC--cEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590 34 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 110 (294)
Q Consensus 34 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 110 (294)
.|.++|.+.... +.+..+...+.+..|+| +++.|+..+. ++ .|.+||+.+++.... .. ..+......|+|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~---~~g~~~~~~wSP- 271 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKV-TS---FPGINGAPRFSP- 271 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEe-cC---CCCCcCCeeECC-
Confidence 677778655433 45556678899999999 7777776543 33 588889988765332 21 233345789999
Q ss_pred CCceE-EeeecCCc--EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-C
Q 022590 111 DIYRI-ASCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-D 184 (294)
Q Consensus 111 ~~~~l-~~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d 184 (294)
++..| ++...+|. |.++|+.+.. ...+..+........|+ ++.++..+. +
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~------------------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~ 327 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKA------------------------LTRITRHRAIDTEPSWHPDGKSLIFTSERG 327 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCC------------------------eEECccCCCCccceEECCCCCEEEEEECCC
Confidence 66655 45566775 6666776521 11122233333445564 666655443 3
Q ss_pred C--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC--eEEEEeccCCCceeeeeccccc
Q 022590 185 N--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQ 260 (294)
Q Consensus 185 ~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~ 260 (294)
+ .|.++|+.+++. ..+..........+|+|+++ .++++...++ .|.++|+.+++... +....
T Consensus 328 g~~~Iy~~dl~~g~~----------~~Lt~~g~~~~~~~~SpDG~-~l~~~~~~~g~~~I~~~dl~~g~~~~---lt~~~ 393 (448)
T PRK04792 328 GKPQIYRVNLASGKV----------SRLTFEGEQNLGGSITPDGR-SMIMVNRTNGKFNIARQDLETGAMQV---LTSTR 393 (448)
T ss_pred CCceEEEEECCCCCE----------EEEecCCCCCcCeeECCCCC-EEEEEEecCCceEEEEEECCCCCeEE---ccCCC
Confidence 3 466667765431 11211222233468999996 2333334344 45567777765322 22111
Q ss_pred cCCCeEEEEEccCCCEEEEecc-CCc--EEEEec
Q 022590 261 SKSPIRQTAMSYDGSTILSCCE-DGA--IWRWDA 291 (294)
Q Consensus 261 ~~~~v~~~~~s~~~~~l~s~~~-dg~--i~vw~~ 291 (294)
......|+|+|++|+..+. +|. +++++.
T Consensus 394 ---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 394 ---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred ---CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1223479999998876554 343 566655
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=8.2e-13 Score=114.68 Aligned_cols=217 Identities=14% Similarity=0.256 Sum_probs=154.5
Q ss_pred EEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee
Q 022590 15 SWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 93 (294)
Q Consensus 15 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 93 (294)
++.-+|... +-++|+.||.|++|....++.+..+. .-...|+.+.|+. .|+.+..+..||.+.+|... .+.....+
T Consensus 2213 r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2213 RMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred eecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Ccceeccc
Confidence 344457666 99999999999999998888776664 2337899999999 78888899999999999986 44444444
Q ss_pred ccCCCCCceeEEEEecCCCceEEeee---cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceee
Q 022590 94 GAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 170 (294)
Q Consensus 94 ~~~~~~~~v~~l~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (294)
.|.....++.|-. ..+++++ .++.+.+||...... . -..-..|...+++
T Consensus 2290 ---chnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~--------------------~--s~v~~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2290 ---CHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM--------------------N--SLVHTCHDGGATV 2341 (2439)
T ss_pred ---cCCccccceeeee---hhhhccccCCCCCcccchhcccCcc--------------------c--ceeeeecCCCceE
Confidence 6999999999974 5567664 578999999875211 1 1222789999999
Q ss_pred ccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590 171 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248 (294)
Q Consensus 171 ~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 248 (294)
+++- .+.|++|+.+|.|++||++..+ ..+.++. +. .. .++++|+..|.++||++...
T Consensus 2342 l~~~P~~qllisggr~G~v~l~D~rqrq---------l~h~~~~---------~~-~~--~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQ---------LRHTFQA---------LD-TR--EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEEcCcceEEEecCCcCcEEEeehHHHH---------HHHHhhh---------hh-hh--heeeccCcccceEEEEcccc
Confidence 9996 6789999999999999998655 3333332 22 22 58999999999999999886
Q ss_pred CceeeeeccccccCCCe----EEEEEccCCCEEEEeccCCc
Q 022590 249 PPVLIARLSHAQSKSPI----RQTAMSYDGSTILSCCEDGA 285 (294)
Q Consensus 249 ~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~s~~~dg~ 285 (294)
.........+ .+.+-. ..+...+ .+.|.+++.||+
T Consensus 2401 ~ll~~~p~e~-ak~gfFr~~g~Q~~v~~-~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2401 GLLHTFPSEH-AKQGFFRNIGMQINVGQ-CNRIFSCGADGT 2439 (2439)
T ss_pred chhhcCchhh-cccchhhhcCceeeecc-CceEEEecCCCC
Confidence 5332222222 222111 2222222 356777777773
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.2e-10 Score=93.65 Aligned_cols=214 Identities=14% Similarity=0.065 Sum_probs=116.2
Q ss_pred CceeEEEEEeecCCCceEEEEeec-CC--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEE-EeeCCCc--EEEE
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGI-NG--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDES--VRLW 81 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~--i~vw 81 (294)
.+.+....|+ |||+ .|+..+. ++ .|.+||+.+++... +....+.....+|+| +++.|+ +.+.+|. |.++
T Consensus 217 ~~~~~~p~wS--PDG~-~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 217 PEPLMSPAWS--PDGR-KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred CCcccCceEC--CCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEEE
Confidence 3456677887 9998 6665543 33 58889988776432 222233445789999 666554 5666775 7777
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEe-eecCCc--EEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS-CGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~-~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
|+.+++... +. .+........|+| ++..++. ...++. |.++|+.++..
T Consensus 292 dl~tg~~~~-lt---~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~------------------------ 342 (448)
T PRK04792 292 DIATKALTR-IT---RHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKV------------------------ 342 (448)
T ss_pred ECCCCCeEE-Cc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCE------------------------
Confidence 887776543 33 2455667889999 6665544 444454 55555554210
Q ss_pred EEeecCCCceeecce--ecceEEEeeC-CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590 159 FIASVHSNYVDCNRW--LGDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 233 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~--~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 233 (294)
..+...........| +|++++..+. ++ .|.++|+.+++. ..+ ... .......|+|+++ .++++
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-------~~l---t~~-~~d~~ps~spdG~-~I~~~ 410 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-------QVL---TST-RLDESPSVAPNGT-MVIYS 410 (448)
T ss_pred EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-------EEc---cCC-CCCCCceECCCCC-EEEEE
Confidence 011111111122344 3667666544 34 455677766532 111 111 1112347999995 33444
Q ss_pred EcCCCe--EEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590 234 GNREGK--IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 272 (294)
Q Consensus 234 ~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 272 (294)
...+|. +++++.+... ...+. .+.+.+...+|+|
T Consensus 411 ~~~~g~~~l~~~~~~G~~---~~~l~--~~~g~~~~p~Wsp 446 (448)
T PRK04792 411 TTYQGKQVLAAVSIDGRF---KARLP--AGQGEVKSPAWSP 446 (448)
T ss_pred EecCCceEEEEEECCCCc---eEECc--CCCCCcCCCccCC
Confidence 444443 6667764432 23333 2234567778887
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.1e-11 Score=99.08 Aligned_cols=242 Identities=14% Similarity=0.236 Sum_probs=160.0
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---------------cccceecccCcceEEEEeCCCCCceEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---------------KLHKSFVGHGDSINEIRTQPLKPSLVV 70 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~h~~~v~~~~~~~~~~~~l~ 70 (294)
.......|++|+ .... ++|+|+.||.+++..+.+. ..-+++.+|.+.|.-+.|+. +.+.|-
T Consensus 12 PnnvkL~c~~WN--ke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLT 87 (1189)
T KOG2041|consen 12 PNNVKLHCAEWN--KESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLT 87 (1189)
T ss_pred CCCceEEEEEEc--ccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-cccccc
Confidence 345678999997 4444 9999999999999988653 23357789999999999998 778899
Q ss_pred EeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590 71 SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 150 (294)
Q Consensus 71 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
+...+|.|.||-+-.|.-......- ...+.|.+++|+. +|..+.....||.|.+=.+..+...
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNn-RnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIw--------------- 150 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINN-RNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIW--------------- 150 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhC-cCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceec---------------
Confidence 9999999999999887654433321 2567799999998 8888999999999988776652210
Q ss_pred CceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCc--eeeeeeecCCCCeeEEEEc---
Q 022590 151 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA--DILQKYPVPECDIWFIKFS--- 223 (294)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~--- 223 (294)
...-.......+.|+ ...++.+-..|.+.+||.+..-........ .....+......+..+.|.
T Consensus 151 ---------gKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 151 ---------GKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred ---------chhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 000001112244454 334555566789999997654221111000 0001111111223334433
Q ss_pred -----ccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590 224 -----CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284 (294)
Q Consensus 224 -----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 284 (294)
|+. ..++++...|.+.+..-.+.....+.... -.+....|+++|.+||.++.|.
T Consensus 222 ~~~v~pdr--P~lavcy~nGr~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 222 YQPVPPDR--PRLAVCYANGRMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred cccCCCCC--CEEEEEEcCceehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcc
Confidence 333 68999999999998876655432332222 4588999999999999988653
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=8.8e-10 Score=85.63 Aligned_cols=255 Identities=16% Similarity=0.216 Sum_probs=150.0
Q ss_pred EEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEe-----eC-----CCcEEEEE
Q 022590 13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-----SK-----DESVRLWN 82 (294)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-----~~-----dg~i~vwd 82 (294)
|..+.++++|+ ++| -+.+..+.|++..++..+.+... ..+.++.|+| -+.+|.+= .. .-.+.+|+
T Consensus 37 ~~v~~~S~~G~-lfA-~~~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 37 CNVFAYSNNGR-LFA-YSDNQVVKVFEIATLKVVLCVEL--KKTYDLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred ceeEEEcCCCc-EEE-EEcCCeEEEEEccCCcEEEEecc--ceeeeeeecc-cccccccccccccccCCCCCCCceeeee
Confidence 34444558897 444 45567999999988864444432 2789999999 77777552 11 23466888
Q ss_pred cCCCceEEEeecc-------------------------------------CCCCCceeEEEEecCCC-ceEEe-----ee
Q 022590 83 VQTGICILIFAGA-------------------------------------GGHRNEVLSVDFHPSDI-YRIAS-----CG 119 (294)
Q Consensus 83 ~~~~~~~~~~~~~-------------------------------------~~~~~~v~~l~~~~~~~-~~l~~-----~~ 119 (294)
++++.....++.. .-|...|+.+.++|... ..+++ .|
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence 8774322221110 02556688888888313 33333 35
Q ss_pred cCCcEEEEecccccccc-----------ccceeecCCCC---------------C-CCCcee------eeceEEeecCCC
Q 022590 120 MDNTVKIWSMKEFWTYV-----------EKSFTWTDLPS---------------K-FPTKYV------QFPVFIASVHSN 166 (294)
Q Consensus 120 ~dg~i~~wd~~~~~~~~-----------~~~~~~~~~~~---------------~-~~~~~~------~~~~~~~~~~~~ 166 (294)
.-+.+++|......... .-.+.|..... . .....+ ......-..-.+
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G 271 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG 271 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence 55678888876311000 00111111100 0 000000 001111112368
Q ss_pred ceeeccee--cceEEE--eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc---CCCe
Q 022590 167 YVDCNRWL--GDFILS--KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN---REGK 239 (294)
Q Consensus 167 ~i~~~~~~--~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~dg~ 239 (294)
+|.++.|+ +..|++ |-.-..+.+||++-. + .+...+++-+.+-|+|.|+ +++.++ ..|.
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----------~--v~df~egpRN~~~fnp~g~--ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----------P--VFDFPEGPRNTAFFNPHGN--IILLAGFGNLPGD 337 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCCCC----------E--eEeCCCCCccceEECCCCC--EEEEeecCCCCCc
Confidence 89999997 544444 455678999999742 2 3344566777899999995 554433 4689
Q ss_pred EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc------CCcEEEEecC
Q 022590 240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE------DGAIWRWDAI 292 (294)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~vw~~~ 292 (294)
|.+||+.+.+ .+..+.. ..-+-+.|+|||++++|+.. |+.++||++.
T Consensus 338 mEvwDv~n~K--~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 338 MEVWDVPNRK--LIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred eEEEeccchh--hcccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 9999999865 3333331 12456899999999999864 6789999874
No 260
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=3e-12 Score=102.32 Aligned_cols=226 Identities=19% Similarity=0.342 Sum_probs=155.3
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCc--ceEEEEeCCCC--CceEEEeeCCCcEEEEEc
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD--SINEIRTQPLK--PSLVVSASKDESVRLWNV 83 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~--~v~~~~~~~~~--~~~l~s~~~dg~i~vwd~ 83 (294)
.+.+.++..+ |.|+ -+|.++.-| +.+.|++..-....+-.|.. .|-...|+|.. ...+++.+. ..-.+|++
T Consensus 24 ~~~~~a~si~--p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSIN--PSGR-DIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNL 98 (1081)
T ss_pred cCcccceeec--cccc-hhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc-chhhhhhh
Confidence 3556666666 8887 777777776 55667765432223333433 46778888742 234555444 44558988
Q ss_pred CCC--ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 84 QTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 84 ~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
... +.+..+. .+|...|+.+.|+|+....+++++.|-.+..||++.. ..|+...
T Consensus 99 A~ss~~aIef~l--hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp----------------------~~p~ys~ 154 (1081)
T KOG0309|consen 99 AKSSSNAIEFVL--HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP----------------------HRPFYST 154 (1081)
T ss_pred hcCCccceEEEE--ecCccceeccccCCCCCcceeeccccccceeeeccCC----------------------Ccceeee
Confidence 533 3333322 2799999999999999999999999999999999984 4456666
Q ss_pred ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590 162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 239 (294)
Q Consensus 162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 239 (294)
..-...-..+.|+ ...+.+.+..+.|++||.+.+.. ++..++.+...++.+.|..-.. ..+.+.+.||+
T Consensus 155 ~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~--------pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~t 225 (1081)
T KOG0309|consen 155 SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST--------PLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGT 225 (1081)
T ss_pred ecccccCceeeecccCcchhhhccCCceEEEeccCCCc--------ceEEecccceeeehHHHhhhhh-hhhcccCCCCc
Confidence 6666667778887 33444457778899999998764 5666777777788888876543 56888999999
Q ss_pred EEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590 240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 274 (294)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (294)
|+.||............. ...+|..-++.|-|
T Consensus 226 vkfw~y~kSt~e~~~~vt---t~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVT---TNFPIWRGRYLPFG 257 (1081)
T ss_pred eeeecccccccccceecc---ccCcceeccccccC
Confidence 999999876544444432 23567777777744
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.8e-10 Score=90.92 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=121.5
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecC---CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEE-EeeCCC--cEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDE--SVR 79 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg--~i~ 79 (294)
.+.+.+...+|+ |||+ .|+..+.+ ..|.+|++.+++... +....+.+...+|+| +++.|+ +...+| .|.
T Consensus 196 ~~~~~~~~p~wS--pDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 196 QSREPILSPRWS--PDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred cCCCceeeeeEC--CCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCEEEEEEccCCCceEE
Confidence 455677788887 9998 66655433 469999998876533 333344556789999 666665 555555 578
Q ss_pred EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEee-ecCC--cEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590 80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 156 (294)
Q Consensus 80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~-~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
+||+.+++... +. .+........|+| ++..++.. ..+| .|.++|+..+...
T Consensus 271 ~~d~~~~~~~~-lt---~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~--------------------- 324 (430)
T PRK00178 271 VMDLASRQLSR-VT---NHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAE--------------------- 324 (430)
T ss_pred EEECCCCCeEE-cc---cCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEE---------------------
Confidence 88998776543 33 2555567789999 66555444 3444 4666666542110
Q ss_pred ceEEeecCCCceeecce--ecceEEEeeCC-C--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590 157 PVFIASVHSNYVDCNRW--LGDFILSKSVD-N--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 231 (294)
Q Consensus 157 ~~~~~~~~~~~i~~~~~--~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 231 (294)
.+ .... .......| +++.++..+.+ + .|.++|+.+++. ..+.. . .......|+|+++ .++
T Consensus 325 ~l-t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-------~~lt~---~-~~~~~p~~spdg~-~i~ 389 (430)
T PRK00178 325 RV-TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-------RILTD---T-SLDESPSVAPNGT-MLI 389 (430)
T ss_pred Ee-ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-------EEccC---C-CCCCCceECCCCC-EEE
Confidence 00 0111 11112234 36777665543 3 588889876542 11111 1 1112357999995 233
Q ss_pred EEEcCCC--eEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590 232 AIGNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 273 (294)
Q Consensus 232 ~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 273 (294)
++...+| .+.++++.... ...+. .+.+.+...+|+|-
T Consensus 390 ~~~~~~g~~~l~~~~~~g~~---~~~l~--~~~g~~~~p~ws~~ 428 (430)
T PRK00178 390 YATRQQGRGVLMLVSINGRV---RLPLP--TAQGEVREPSWSPY 428 (430)
T ss_pred EEEecCCceEEEEEECCCCc---eEECc--CCCCCcCCCccCCC
Confidence 3343333 46666765442 22232 22345666778763
No 262
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.40 E-value=4.2e-09 Score=92.70 Aligned_cols=264 Identities=13% Similarity=0.063 Sum_probs=152.2
Q ss_pred EEEEeecC-CCceEEEEeecCCeEEEEEcCCccccceecc--------------cCcceEEEEeCCCCCceEEE-eeCCC
Q 022590 13 TVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--------------HGDSINEIRTQPLKPSLVVS-ASKDE 76 (294)
Q Consensus 13 ~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~l~s-~~~dg 76 (294)
.+++. + +|+ ++++-+.++.|+++|.. ++.+..+.+ .-.....+++.+ +++.|+. -...+
T Consensus 572 gvavd--~~~g~-lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~ 646 (1057)
T PLN02919 572 KLAID--LLNNR-LFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENH 646 (1057)
T ss_pred eEEEE--CCCCe-EEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCc
Confidence 35554 4 355 77777888999999975 443333321 112357899998 5554444 44567
Q ss_pred cEEEEEcCCCceEEEeeccC-------C-------CCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceee
Q 022590 77 SVRLWNVQTGICILIFAGAG-------G-------HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 142 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~~~~~~-------~-------~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 142 (294)
.|+++|..++. +..+.... + .-.....++++|.++.++++.+.++.|++||........ +..
T Consensus 647 ~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~---~~G 722 (1057)
T PLN02919 647 ALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV---FSG 722 (1057)
T ss_pred eEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE---Eec
Confidence 89999987654 33332100 0 012346899999667777887888999999987642210 000
Q ss_pred cCCCCCCCCceeeeceEEeecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCC----Cceeeeeee----
Q 022590 143 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEG----TADILQKYP---- 211 (294)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~---- 211 (294)
.+...... ... .....-.....++++ ++ ++++-+.++.|++||+.++....... .......+.
T Consensus 723 ~G~~~~~~----g~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 723 DGYERNLN----GSS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred CCccccCC----CCc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 00000000 000 000011233456665 45 55566677999999998653110000 000000000
Q ss_pred ----cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc---------ccccCCCeEEEEEccCCCEEE
Q 022590 212 ----VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS---------HAQSKSPIRQTAMSYDGSTIL 278 (294)
Q Consensus 212 ----~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~ 278 (294)
..-.....+++++++ .++++-..++.|++||..++......... ....-.....++++++|++++
T Consensus 797 ~g~~~~l~~P~Gvavd~dG--~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDG--QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred chhhhhccCCceeeEeCCC--cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 001134578899988 57788888999999999876432211100 001123567899999999999
Q ss_pred EeccCCcEEEEecCC
Q 022590 279 SCCEDGAIWRWDAIP 293 (294)
Q Consensus 279 s~~~dg~i~vw~~~~ 293 (294)
+-+.++.|++||+++
T Consensus 875 aDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 875 ADTNNSLIRYLDLNK 889 (1057)
T ss_pred EECCCCEEEEEECCC
Confidence 989999999999864
No 263
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.2e-10 Score=92.43 Aligned_cols=249 Identities=12% Similarity=0.138 Sum_probs=164.0
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCC-----------CceEEEeeCCC
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK-----------PSLVVSASKDE 76 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~~l~s~~~dg 76 (294)
...-.++.|+ |.| ++|.|+.. .|.+-|..+-+.++.+..|...|+.+.|.|.. .-+||++...|
T Consensus 15 ~sN~~A~Dw~--~~G--LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWS--PSG--LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccC--ccc--eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446788897 777 68887755 89999999999999999999999999998731 12678888899
Q ss_pred cEEEEEcCCCceEEEeeccCCCCCceeEEEEecC---CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590 77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS---DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 153 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (294)
.|.+||...+..+..+. .|..++..++|-|. ....|++-....++.+|+..++..
T Consensus 90 rIil~d~~~~s~~~~l~---~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k------------------- 147 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLS---HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK------------------- 147 (1062)
T ss_pred cEEEEEehhhhhhhhhc---CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-------------------
Confidence 99999999998888887 58899999999873 225677777778999999988532
Q ss_pred eeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee--------------ecC-CC
Q 022590 154 VQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY--------------PVP-EC 215 (294)
Q Consensus 154 ~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--------------~~~-~~ 215 (294)
............|+.++ ...+...+..|.+.+-+.-...........-.+..- ..+ ..
T Consensus 148 ----~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~ 223 (1062)
T KOG1912|consen 148 ----FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTST 223 (1062)
T ss_pred ----eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCC
Confidence 33333334445555554 455555566666665554433222111111011000 000 00
Q ss_pred C--------eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC--CEEEEeccCCc
Q 022590 216 D--------IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG--STILSCCEDGA 285 (294)
Q Consensus 216 ~--------i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~ 285 (294)
+ ...++|+|.-+ +.++. .-...+.++|++-..+.....++ ++.+.-+.+-|++ ..|++.-.||.
T Consensus 224 ~~sa~fity~a~faf~p~~r-n~lfi-~~prellv~dle~~~~l~vvpie----r~~akfv~vlP~~~rd~LfclH~nG~ 297 (1062)
T KOG1912|consen 224 PASAYFITYCAQFAFSPHWR-NILFI-TFPRELLVFDLEYECCLAVVPIE----RGGAKFVDVLPDPRRDALFCLHSNGR 297 (1062)
T ss_pred CcchhHHHHHHhhhcChhhh-ceEEE-EeccceEEEcchhhceeEEEEec----cCCcceeEeccCCCcceEEEEecCCe
Confidence 0 11245677765 33333 34567999999888755554444 2334456666654 58999999999
Q ss_pred EEEEecCC
Q 022590 286 IWRWDAIP 293 (294)
Q Consensus 286 i~vw~~~~ 293 (294)
+.+|-.+.
T Consensus 298 ltirvrk~ 305 (1062)
T KOG1912|consen 298 LTIRVRKE 305 (1062)
T ss_pred EEEEEeec
Confidence 99997654
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.3e-09 Score=87.02 Aligned_cols=219 Identities=12% Similarity=0.040 Sum_probs=120.7
Q ss_pred CeEEEEEcCCccccceecccCcceEEEEeCCCCCce---EEEeeCCC--cEEEEEcCCCceEEEeeccCCCCCceeEEEE
Q 022590 33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSL---VVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDF 107 (294)
Q Consensus 33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~ 107 (294)
..|.+.|.+.+.. +.+......+.+-+|+| +++. +++...+| .|.+.++..++...... ..+......|
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----~~g~~~~p~w 238 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----LQGNQLMPTF 238 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeec----CCCCccceEE
Confidence 4677777765544 44554556677889999 6653 23444444 47777887776544332 3444567899
Q ss_pred ecCCCceEEeee-cCC----cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEE
Q 022590 108 HPSDIYRIASCG-MDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 180 (294)
Q Consensus 108 ~~~~~~~l~~~~-~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 180 (294)
+| +++.|+..+ .+| .+..|++..... ..+...............|+ |+.|+.
T Consensus 239 SP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~--------------------g~~~~lt~~~~~~~~~p~wSPDG~~Laf 297 (428)
T PRK01029 239 SP-RKKLLAFISDRYGNPDLFIQSFSLETGAI--------------------GKPRRLLNEAFGTQGNPSFSPDGTRLVF 297 (428)
T ss_pred CC-CCCEEEEEECCCCCcceeEEEeecccCCC--------------------CcceEeecCCCCCcCCeEECCCCCEEEE
Confidence 99 776665543 333 233355543100 00111111112223344565 776665
Q ss_pred ee-CCCeEEEec--CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE-cCC--CeEEEEeccCCCceeee
Q 022590 181 KS-VDNEIVLWE--PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NRE--GKIFVWELQSSPPVLIA 254 (294)
Q Consensus 181 ~~-~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~ 254 (294)
.+ .+|...+|. +..... ....+......+....|+|+++ .|+.. ..+ ..|.+||+.+++....
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~--------~~~~lt~~~~~~~~p~wSPDG~--~Laf~~~~~g~~~I~v~dl~~g~~~~L- 366 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQ--------SPRLLTKKYRNSSCPAWSPDGK--KIAFCSVIKGVRQICVYDLATGRDYQL- 366 (428)
T ss_pred EECCCCCceEEEEECccccc--------ceEEeccCCCCccceeECCCCC--EEEEEEcCCCCcEEEEEECCCCCeEEc-
Confidence 54 456555554 432110 1222333334556789999995 45443 332 4699999988864322
Q ss_pred eccccccCCCeEEEEEccCCCEEEEec-c--CCcEEEEecCC
Q 022590 255 RLSHAQSKSPIRQTAMSYDGSTILSCC-E--DGAIWRWDAIP 293 (294)
Q Consensus 255 ~~~~~~~~~~v~~~~~s~~~~~l~s~~-~--dg~i~vw~~~~ 293 (294)
. .....+....|+|||+.|+..+ . ...|+++|+..
T Consensus 367 --t--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 367 --T--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred --c--CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 2 1123467789999999887543 2 34588888753
No 265
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.6e-12 Score=94.67 Aligned_cols=155 Identities=14% Similarity=0.222 Sum_probs=120.7
Q ss_pred EEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-----ce
Q 022590 14 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-----IC 88 (294)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~ 88 (294)
++|+.+--|- . ++.+.+-.|-+-|++++-. +.|. ..+.|.++.|.. .+++++.|..+|.|..+|++.+ .+
T Consensus 217 CawSlni~gy-h-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 217 CAWSLNIMGY-H-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhcccee-e-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcc
Confidence 3777666664 4 5666677899999988754 3344 567899999998 7889999999999999999854 45
Q ss_pred EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590 89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 168 (294)
Q Consensus 89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (294)
...+. |.+.|+++..-..++.+|++.+.+|+|++||++..+. ...+....+|.+.-
T Consensus 292 a~rly----h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--------------------~~~V~qYeGHvN~~ 347 (425)
T KOG2695|consen 292 AQRLY----HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--------------------KKSVMQYEGHVNLS 347 (425)
T ss_pred eEEEE----cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc--------------------ccceeeeecccccc
Confidence 56665 9999999988765788899999999999999997321 23467777887765
Q ss_pred eeccee----cceEEEeeCCCeEEEecCCCCCC
Q 022590 169 DCNRWL----GDFILSKSVDNEIVLWEPKMKEQ 197 (294)
Q Consensus 169 ~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~ 197 (294)
.-+-+. ...+++++.|...|+|.++.+..
T Consensus 348 a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 348 AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred cccccccccccceEEEccCeeEEEEEecccCce
Confidence 555553 56788899999999999998763
No 266
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.1e-10 Score=94.16 Aligned_cols=232 Identities=13% Similarity=0.180 Sum_probs=157.6
Q ss_pred CcccccCceeEEEEEeecC--------C-CceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC--CC-ceE
Q 022590 2 CYVDQKEESFYTVSWACNV--------D-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL--KP-SLV 69 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~--------~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~--~~-~~l 69 (294)
..++.|+..|+.+.|++-| . ...+||++.-.|.|.+||...+..+..+..|.+++..++|-+. +. .+|
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 4567899999999999632 1 3447888888999999999999999999999999999999763 22 567
Q ss_pred EEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccc--cceeecCCCC
Q 022590 70 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE--KSFTWTDLPS 147 (294)
Q Consensus 70 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~--~~~~~~~~~~ 147 (294)
++-....++.+|+..+|+...... .......|+.+.|.+...+..-+..|.+.+-+.-....... +.+.....-+
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~~---ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~S 205 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKYD---YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHS 205 (1062)
T ss_pred EEecCCcEEEEEEccCCceeeccc---cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCcc
Confidence 777777899999999999888776 34456778999998888887777788887777654221111 1111110000
Q ss_pred CCCCceeeeceEEeecCC---C----ceee--ccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC
Q 022590 148 KFPTKYVQFPVFIASVHS---N----YVDC--NRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC 215 (294)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~---~----~i~~--~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 215 (294)
... ........-..+. . ...| ++|+ .+.++. ...+.+.++|++-.. .+...+.+.+
T Consensus 206 dl~--~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~---------~l~vvpier~ 273 (1062)
T KOG1912|consen 206 DLA--HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYEC---------CLAVVPIERG 273 (1062)
T ss_pred chh--hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhc---------eeEEEEeccC
Confidence 000 0000000000000 0 0112 2333 333333 456789999998544 6777777888
Q ss_pred CeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590 216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248 (294)
Q Consensus 216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 248 (294)
.+..+.+-|++....|++.-.+|.+.+|-.+..
T Consensus 274 ~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 274 GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred CcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 888899999998889999999999999987653
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=7.7e-10 Score=86.03 Aligned_cols=259 Identities=17% Similarity=0.240 Sum_probs=154.0
Q ss_pred EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC-----------CCcEEE
Q 022590 12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-----------DESVRL 80 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----------dg~i~v 80 (294)
+-+.|| |.|. ||++-..-| |.+|--.+-..++.+. |. .|.-+.||| +.++|++-+. ...++|
T Consensus 214 tyv~wS--P~GT-YL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 214 TYVRWS--PKGT-YLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeEEec--CCce-EEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCC-ccceEEEecCCccccCcccCCCceEEE
Confidence 446776 9998 999998876 8999877767777776 53 588899999 8899998653 256899
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce--------eecCCCCCC---
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF--------TWTDLPSKF--- 149 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------~~~~~~~~~--- 149 (294)
||+.+|...+.|..+......-.-+.|+. ++.++|.-.. ..|.||+.......-...+ .|.+.....
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred EEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence 99999999998885433323334467988 8888887766 5788888777443333322 222211100
Q ss_pred --CCceeeeceEEeecCC---------Ccee--ecce--ecceEEEee----------CCCeEEEecCCCCCCCCCCCCc
Q 022590 150 --PTKYVQFPVFIASVHS---------NYVD--CNRW--LGDFILSKS----------VDNEIVLWEPKMKEQSPGEGTA 204 (294)
Q Consensus 150 --~~~~~~~~~~~~~~~~---------~~i~--~~~~--~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~ 204 (294)
........+..+.... -.|. .+-| +|++|+.-- .-..+.|+.++....
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI------- 437 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI------- 437 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-------
Confidence 0000000000000000 0111 1223 256655421 122355555554332
Q ss_pred eeeeeeecCCCCeeEEEEcccCCcceEEEE-cCCCeEEEEeccCC--CceeeeeccccccCCCeEEEEEccCCCEEEEe-
Q 022590 205 DILQKYPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSS--PPVLIARLSHAQSKSPIRQTAMSYDGSTILSC- 280 (294)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~- 280 (294)
++...+. ...+...+|-|.|+.-.+++| ....++.+|.+++. ++..+..+. ....+.+.|+|.|++++.+
T Consensus 438 -pve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~ 511 (698)
T KOG2314|consen 438 -PVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAA 511 (698)
T ss_pred -Cceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEE
Confidence 2222332 345777889999863222333 23467889988743 222333332 2457889999999998876
Q ss_pred --ccCCcEEEEecC
Q 022590 281 --CEDGAIWRWDAI 292 (294)
Q Consensus 281 --~~dg~i~vw~~~ 292 (294)
|..|.+.++|+.
T Consensus 512 l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 512 LVSRRGDLEFYDTD 525 (698)
T ss_pred ecccccceEEEecc
Confidence 457889999875
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.2e-09 Score=87.34 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=122.4
Q ss_pred ceeEEEEEeecCCCceE-E-EEeecC--CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee-CCC----cEE
Q 022590 9 ESFYTVSWACNVDGIPF-L-VAGGIN--GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE----SVR 79 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~-l-~~~~~d--g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg----~i~ 79 (294)
+.+..-+|+ |||+.+ + ++...+ ..|.+.++.+++.. .+....+.....+|+| +++.|+..+ .+| .+.
T Consensus 185 ~~~~sP~wS--PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 185 SLSITPTWM--HIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CCcccceEc--cCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECC-CCCEEEEEECCCCCcceeEE
Confidence 344555776 998732 2 244444 35888888877543 3333445566789999 776666544 223 344
Q ss_pred EEEcCCC---ceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590 80 LWNVQTG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 155 (294)
Q Consensus 80 vwd~~~~---~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (294)
.|++..+ +...... +........+|+| ++..|+..+ .+|...+|.+..... .
T Consensus 261 ~~~~~~g~~g~~~~lt~---~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~--------------------g 316 (428)
T PRK01029 261 SFSLETGAIGKPRRLLN---EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPE--------------------G 316 (428)
T ss_pred EeecccCCCCcceEeec---CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECccc--------------------c
Confidence 4776653 3222222 2223446789999 776555544 567666665432000 0
Q ss_pred eceEEeecCCCceeeccee--cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590 156 FPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 230 (294)
Q Consensus 156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 230 (294)
.....+..+...+....|+ |+.|+..+.+ ..|.+||+.+++. ..+......+....|+|+++ .
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----------~~Lt~~~~~~~~p~wSpDG~--~ 384 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----------YQLTTSPENKESPSWAIDSL--H 384 (428)
T ss_pred cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----------EEccCCCCCccceEECCCCC--E
Confidence 0011222233344555665 7777765543 4699999987642 12222223456688999985 4
Q ss_pred EE-EEcC--CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590 231 AA-IGNR--EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 274 (294)
Q Consensus 231 l~-~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (294)
|+ +... ...|+++|+..++...+.. ..+.+...+|+|-.
T Consensus 385 L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-----~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 385 LVYSAGNSNESELYLISLITKKTRKIVI-----GSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEeec-----CCCcccCceecCCC
Confidence 44 3332 4568888988775333221 22346677888753
No 269
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=8.1e-11 Score=85.05 Aligned_cols=232 Identities=19% Similarity=0.199 Sum_probs=142.3
Q ss_pred CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc-eEE-EeeccCCCC------------CceeEEEEec-CCCceEEe
Q 022590 53 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CIL-IFAGAGGHR------------NEVLSVDFHP-SDIYRIAS 117 (294)
Q Consensus 53 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~-~~~~~~~~~------------~~v~~l~~~~-~~~~~l~~ 117 (294)
.+.|+++.|.. .|.+|++|...|.|.++.-+... +.. .+..+++|. ..|..+.|.. .+...++.
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 46789999998 78999999999999999765332 111 111122333 4578888864 23356777
Q ss_pred eecCCcEEEEecccccccc------ccceeecCCCCCCCCce-------------eeeceE-EeecCCCceeeccee-cc
Q 022590 118 CGMDNTVKIWSMKEFWTYV------EKSFTWTDLPSKFPTKY-------------VQFPVF-IASVHSNYVDCNRWL-GD 176 (294)
Q Consensus 118 ~~~dg~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~i~~~~~~-~~ 176 (294)
.+.|.+|++|.+....... ...+............. ...|.. ....|+-.|.+++++ ..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999998732111 11111111100000000 011111 225688888999997 44
Q ss_pred eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC-----CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc-
Q 022590 177 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP- 250 (294)
Q Consensus 177 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~- 250 (294)
..+....|-+|.+|++.-.... . -+-..+.+ ...|++..|+|... +.+.-.+..|.|++-|++....
T Consensus 185 et~lSaDdLrINLWnl~i~D~s-----F-nIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGS-----F-NIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred heeeeccceeeeeccccccCCc-----e-EEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhhhhc
Confidence 4445577889999999755421 1 11122222 23577889999876 5677778899999999984321
Q ss_pred -----eeeeeccc------cccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 251 -----VLIARLSH------AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 251 -----~~~~~~~~------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.....+.. .+-...|..+.|+++|+++++-+.- +|++||++.
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm 310 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNM 310 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEeccc
Confidence 11111111 1223568999999999999987554 699999864
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=9.6e-09 Score=76.00 Aligned_cols=255 Identities=12% Similarity=0.038 Sum_probs=155.2
Q ss_pred ccCceeEEEEEeecCCCceEEEEeec---CCeEEEEEcCC--cccc--ceecccCcceEEEEeCCCCCceEEEeeC-CCc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSN--EKLH--KSFVGHGDSINEIRTQPLKPSLVVSASK-DES 77 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~ 77 (294)
.+.+..+=|+|+ |+++ +|.++.. +|.|.-|.++. |++. ........+-+.+++++ ++++++++.. .|.
T Consensus 37 ~~~~nptyl~~~--~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~ 112 (346)
T COG2706 37 AELGNPTYLAVN--PDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGS 112 (346)
T ss_pred cccCCCceEEEC--CCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCce
Confidence 344566677886 8887 7777655 47787777764 4332 12222233448899999 8888888765 588
Q ss_pred EEEEEcCC-CceEEEeeccCCCCCc----------eeEEEEecCCCceEEeeec-CCcEEEEeccccccccccceeecCC
Q 022590 78 VRLWNVQT-GICILIFAGAGGHRNE----------VLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDL 145 (294)
Q Consensus 78 i~vwd~~~-~~~~~~~~~~~~~~~~----------v~~l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~ 145 (294)
|.++-++. |........ -.|.+. +....+.| ++++|++... --.|.+|++..+..........
T Consensus 113 v~v~p~~~dG~l~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--- 187 (346)
T COG2706 113 VSVYPLQADGSLQPVVQV-VKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--- 187 (346)
T ss_pred EEEEEcccCCccccceee-eecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccccc---
Confidence 99999865 332221111 124444 88899999 8877777642 2369999998643322111111
Q ss_pred CCCCCCceeeeceEEeecCCCceeeccee--cceEEEe-eCCCeEEEecCCCCCCCCCCCCceeeeeee------cCCCC
Q 022590 146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYP------VPECD 216 (294)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~ 216 (294)
.....-+-+.|+ +++..+. --+++|.+|....... ....++.+. .....
T Consensus 188 -----------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g-----~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 188 -----------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG-----KFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred -----------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc-----eEEEeeeeccCccccCCCCc
Confidence 122333445554 5555544 4588999998876411 111222211 11245
Q ss_pred eeEEEEcccCCcceEEEEc-CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC-cEEEEecCC
Q 022590 217 IWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG-AIWRWDAIP 293 (294)
Q Consensus 217 i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~vw~~~~ 293 (294)
...+.++++| ++|.++. ....|.+|.+...............+...-+...|+|.|++|+++.+++ .|.+|.++.
T Consensus 246 ~aaIhis~dG--rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 246 AAAIHISPDG--RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred eeEEEECCCC--CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 6678899999 5666654 3457888888765433322222224445578999999999999998765 588888764
No 271
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=7.9e-12 Score=91.20 Aligned_cols=182 Identities=12% Similarity=0.051 Sum_probs=128.8
Q ss_pred EeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc
Q 022590 60 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS 139 (294)
Q Consensus 60 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 139 (294)
+|+-+-..+-++.+.+-.|.+-|+++|-... |. ..+.|.++.|.. .++++..|+.+|.|...|++...+.
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs-f~----sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG---- 287 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-FQ----SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQG---- 287 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc-cc----cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccC----
Confidence 5654222223556667778888998876433 33 677899999997 7899999999999999999983110
Q ss_pred eeecCCCCCCCCceeeeceEEeecCCCceeecc---eecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590 140 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR---WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 216 (294)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (294)
..-......|...|+++. |++++|++.+.+|+|++||.+.-+. ...++.+.+|-..
T Consensus 288 ---------------~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~ 346 (425)
T KOG2695|consen 288 ---------------NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNL 346 (425)
T ss_pred ---------------CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccc
Confidence 111223345788888765 5689999999999999999997652 2246777777655
Q ss_pred eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590 217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 272 (294)
Q Consensus 217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 272 (294)
-..+-+.-+.....+++++.|-..+||.++.+.......++.......+.+++|..
T Consensus 347 ~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 347 SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 55555555554468889999999999999999865555555444444567777754
No 272
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.33 E-value=7e-11 Score=85.35 Aligned_cols=257 Identities=16% Similarity=0.233 Sum_probs=158.9
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-----ccceecccC------------cceEEEEeCCC-CCc
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHG------------DSINEIRTQPL-KPS 67 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~h~------------~~v~~~~~~~~-~~~ 67 (294)
...+.|+++.|. ..|. ||++|...|.|.+|.-.... ....+++|. ..|..+.|... +..
T Consensus 24 tead~ItaVefd--~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 24 TEADKITAVEFD--ETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cccceeeEEEec--cccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 345788999997 7788 99999999999999865432 223455553 35788888653 334
Q ss_pred eEEEeeCCCcEEEEEcCCCce-------------------E------------------EEeec---cCCCCCceeEEEE
Q 022590 68 LVVSASKDESVRLWNVQTGIC-------------------I------------------LIFAG---AGGHRNEVLSVDF 107 (294)
Q Consensus 68 ~l~s~~~dg~i~vwd~~~~~~-------------------~------------------~~~~~---~~~~~~~v~~l~~ 107 (294)
.++..+.|.+|++|.+..... + ..... ...|.--|+++.|
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 566778899999998754310 0 00000 0257777899999
Q ss_pred ecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC-----Cceeeccee---cceEE
Q 022590 108 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-----NYVDCNRWL---GDFIL 179 (294)
Q Consensus 108 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~---~~~l~ 179 (294)
+. +...++++ .|-.|.+|++..... ...+.....|. .-|++..|+ .+.+.
T Consensus 181 Ns-D~et~lSa-DdLrINLWnl~i~D~--------------------sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm 238 (460)
T COG5170 181 NS-DKETLLSA-DDLRINLWNLEIIDG--------------------SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM 238 (460)
T ss_pred cC-chheeeec-cceeeeeccccccCC--------------------ceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence 87 66666655 578899999886221 11122223332 345666666 56777
Q ss_pred EeeCCCeEEEecCCCCCCCCCC-----CC--ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCcee
Q 022590 180 SKSVDNEIVLWEPKMKEQSPGE-----GT--ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 252 (294)
Q Consensus 180 ~~~~d~~i~iwd~~~~~~~~~~-----~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 252 (294)
-.+..|.|++-|+|....-... .. ......+..-...|..+.|++++ +++++-+ --++++||++..+. +
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng--ryIlsRd-yltvkiwDvnm~k~-p 314 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG--RYILSRD-YLTVKIWDVNMAKN-P 314 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC--cEEEEec-cceEEEEecccccC-C
Confidence 7788999999999954321000 00 00011112223467788999999 5666554 46799999987653 2
Q ss_pred eeecc-ccc---------cCCCe---EEEEEccCCCEEEEeccCCcEEEEec
Q 022590 253 IARLS-HAQ---------SKSPI---RQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 253 ~~~~~-~~~---------~~~~v---~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
+.+++ +.. ....| -.+.||-|.+.+.+|+..+..-+|-+
T Consensus 315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 22221 100 01112 34678888888999988777666653
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.32 E-value=1.2e-08 Score=78.24 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=94.1
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCC-eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGING-IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
.|...|.-..+. .+++ -++.|..|| .+-|+|..+++. +.+...-+.|.++..++ ++++++.+.....|.+.|++
T Consensus 357 ~~~~~VrY~r~~--~~~e-~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 357 GKKGGVRYRRIQ--VDPE-GDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDID 431 (668)
T ss_pred CCCCceEEEEEc--cCCc-ceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEec
Confidence 455666666666 4444 588899998 899999887765 45555678999999999 99999999999999999999
Q ss_pred CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC----cEEEEeccccc
Q 022590 85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFW 133 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg----~i~~wd~~~~~ 133 (294)
++.....-+ ...+-|+.+.|+| +...+|-+--+| .|+++|+...+
T Consensus 432 ngnv~~idk---S~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 432 NGNVRLIDK---SEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred CCCeeEecc---cccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCe
Confidence 998665444 3567899999999 888888876554 68999988743
No 274
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.32 E-value=1.8e-08 Score=72.35 Aligned_cols=231 Identities=13% Similarity=0.178 Sum_probs=126.7
Q ss_pred cCCCceEEEEeecCCeEEEEEcCCc--cccceeccc---CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee
Q 022590 19 NVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGH---GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 93 (294)
Q Consensus 19 ~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 93 (294)
+.+|+ +++.-.|..|.|-...+. ..+.+.+.. .-.=+.++|+| |+.+||.+...|+|+++|+.. ..+..+.
T Consensus 6 ~~~Gk--~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 6 SSDGK--LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred cCCCc--EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 47887 445556778888776543 122222222 22347799999 999999999999999999954 4444443
Q ss_pred cc----CCCCCceeEEEEecCC-----CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe-ec
Q 022590 94 GA----GGHRNEVLSVDFHPSD-----IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SV 163 (294)
Q Consensus 94 ~~----~~~~~~v~~l~~~~~~-----~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (294)
.. ..-...|..|.|.+.. ...|++-..+|.++-|-+..+... .........+ ..
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q----------------~y~e~hsfsf~~~ 145 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ----------------GYQENHSFSFSSH 145 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC----------------cceeeEEEEeccc
Confidence 21 1223567777776522 235667777888887776431100 0001112222 33
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE-
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI- 240 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i- 240 (294)
++..|.++.|+ .++|++|+.... +.+. -......+++-..-.+..+-..++..+|+..
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~ 206 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQN------QDGM-------------SKASSCGLTAWRILSDSPYYKQVTSSEDDITA 206 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCC------CCcc-------------ccccccCceEEEEcCCCCcEEEccccCccccc
Confidence 57789999997 356666654322 0000 0011122222222222211112222222211
Q ss_pred -----EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 241 -----FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 241 -----~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
.+|.+-+.+ ...+ .......|..|..||||+.||+...+|.|.+|++-
T Consensus 207 ~~~~~~~~~~~~~~--~fs~--~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 207 SSKRRGLLRIPSFK--FFSR--QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred cccccceeecccee--eeec--cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 223322211 1111 11345679999999999999999999999999973
No 275
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.3e-10 Score=92.52 Aligned_cols=191 Identities=15% Similarity=0.187 Sum_probs=133.3
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 88 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 88 (294)
+.++|++++ ++ +++-|+.+|.|++++... .+ .+...|... .- +|.++++|+.||+|.|-.+.+.+.
T Consensus 40 D~is~~av~----~~-~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 40 DAISCCAVH----DK-FFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hHHHHHHhh----cc-eeeeccccceEEEEecCC-cc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCcc
Confidence 455666664 44 899999999999999653 33 333445443 33 889999999999999999999888
Q ss_pred EEEeeccCCCCCceeEEEEecC----CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 89 ILIFAGAGGHRNEVLSVDFHPS----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 89 ~~~~~~~~~~~~~v~~l~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
...+. ...++.+++++|+ ....+++||.-| +.++.-+-... .. ...+..-
T Consensus 106 ~~~~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--------------------k~-~v~l~~~ 159 (846)
T KOG2066|consen 106 ITQYD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--------------------KD-SVVLSEG 159 (846)
T ss_pred ceeEe----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--------------------cc-ceeeecC
Confidence 87776 7789999999993 256799999888 77766543211 11 1145556
Q ss_pred CCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590 165 SNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 244 (294)
Q Consensus 165 ~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d 244 (294)
.++|.++.|.|+++|-++.+| |++||....+......... ...-++.-...+.|.++. .|+.|= .-+|++..
T Consensus 160 eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~---~~~R~e~fpphl~W~~~~---~LVIGW-~d~v~i~~ 231 (846)
T KOG2066|consen 160 EGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS---QSVRPELFPPHLHWQDED---RLVIGW-GDSVKICS 231 (846)
T ss_pred ccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCC---CCCCcccCCCceEecCCC---eEEEec-CCeEEEEE
Confidence 789999999999999988776 8999998776433222111 111112223457788775 466664 44688888
Q ss_pred ccC
Q 022590 245 LQS 247 (294)
Q Consensus 245 ~~~ 247 (294)
++.
T Consensus 232 I~~ 234 (846)
T KOG2066|consen 232 IKK 234 (846)
T ss_pred Eec
Confidence 873
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.32 E-value=9.7e-11 Score=87.17 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=104.1
Q ss_pred cCCCceEEEEeecCCeEEEEEcCCccc----cceecccCcceEEEEeCCCCCc--eEEEeeCCCcEEEEEcCCCceEEEe
Q 022590 19 NVDGIPFLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIF 92 (294)
Q Consensus 19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~ 92 (294)
+++++ ++|.+..+....++++..... ..... -...-+++.|...+.. ..-.++....+.+|....+.+...+
T Consensus 71 s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l 148 (390)
T KOG3914|consen 71 SDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL 148 (390)
T ss_pred CCCce-EEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh
Confidence 47777 999998888887887765433 11111 1223344444442222 2223445566667766655444433
Q ss_pred eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE-EeecCCCceeec
Q 022590 93 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSNYVDCN 171 (294)
Q Consensus 93 ~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 171 (294)
||-+.++.++|+| ++.+++++..|..|++-.... ...+. -..+|...|..+
T Consensus 149 ----GhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa-----------------------~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 149 ----GHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA-----------------------TFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ----hhhhhhheeeecC-CCCEEEEecCCceEEEEecCc-----------------------ccchhhhccccHhheeee
Confidence 6999999999999 889999999999999977665 22222 235699999999
Q ss_pred cee-cceEEEeeCCCeEEEecCCCCCCC
Q 022590 172 RWL-GDFILSKSVDNEIVLWEPKMKEQS 198 (294)
Q Consensus 172 ~~~-~~~l~~~~~d~~i~iwd~~~~~~~ 198 (294)
+.- +..|++++.|+++++||+++++..
T Consensus 201 sl~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 201 SLTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeccCceeeecCCCCcEEEEecccCCcc
Confidence 886 667899999999999999999864
No 277
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.3e-10 Score=87.99 Aligned_cols=255 Identities=14% Similarity=0.064 Sum_probs=172.7
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC---ccccceecccCcceEEEEeCCCCCceEEEeeC-CCcEEEE
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLW 81 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~vw 81 (294)
-|.+.|+.+... ..+ ++.+++.||.++.|.-.. -+.++.+..|...|.+++.+. ++.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~t---ka~-fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPT---KAK-FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeee---hhh-eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEE
Confidence 477788877754 344 999999999999998543 134566678999999999998 8889999777 9999999
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCC----ceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDI----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
|+++-..+..++. ....-.+.|....+ .+-++.-.++.+.++|-.... ...
T Consensus 82 DvEn~DminmiKL----~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~---------------------~q~ 136 (558)
T KOG0882|consen 82 DVENFDMINMIKL----VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF---------------------CQD 136 (558)
T ss_pred Eeeccchhhhccc----ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc---------------------Ccc
Confidence 9987766544432 11222233332122 223333467889999987621 233
Q ss_pred eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCC------CCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590 158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK------EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 229 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (294)
.....-|..+|.++.++ ++.+++....|.|.-|..... +..........+..+........++.|+|++ .
T Consensus 137 ~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g--~ 214 (558)
T KOG0882|consen 137 GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG--A 214 (558)
T ss_pred ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--C
Confidence 44556688999999887 888888888999999998741 1111112222233333445667889999999 5
Q ss_pred eEEEEcCCCeEEEEeccCCCceeeeecc----------------------------ccc-cCCCeEEEEEccCCCEEEEe
Q 022590 230 AAAIGNREGKIFVWELQSSPPVLIARLS----------------------------HAQ-SKSPIRQTAMSYDGSTILSC 280 (294)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------~~~-~~~~v~~~~~s~~~~~l~s~ 280 (294)
.+.+-..|..|++++.++++......-. ... ....-+.+.|...|++|+-|
T Consensus 215 qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~ 294 (558)
T KOG0882|consen 215 QISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYG 294 (558)
T ss_pred cccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEee
Confidence 7888889999999999887532221100 000 11234667888999999998
Q ss_pred ccCCcEEEEecCC
Q 022590 281 CEDGAIWRWDAIP 293 (294)
Q Consensus 281 ~~dg~i~vw~~~~ 293 (294)
+.=| |+|.++.+
T Consensus 295 t~~g-ikvin~~t 306 (558)
T KOG0882|consen 295 TILG-IKVINLDT 306 (558)
T ss_pred ccee-EEEEEeec
Confidence 8776 77777654
No 278
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.31 E-value=1e-10 Score=95.90 Aligned_cols=187 Identities=12% Similarity=0.121 Sum_probs=137.4
Q ss_pred CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecC
Q 022590 65 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 144 (294)
Q Consensus 65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 144 (294)
++..++-|+.-..+..+|+++.+..+.... ..+.|.-|+. ++.++.+|...|+|.+-|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v---~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s------------- 206 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV---SASGVTIMRY---NNRNLFCGDTRGTVFLRDPNS------------- 206 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec---cCCceEEEEe---cCcEEEeecccceEEeecCCc-------------
Confidence 345567777777788899988877766552 3334655555 668899999999999999998
Q ss_pred CCCCCCCceeeeceEEeecCCCceeecceecceEEEeeC---------CCeEEEecCCCCCCCCCCCCceeeeeeecCCC
Q 022590 145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSV---------DNEIVLWEPKMKEQSPGEGTADILQKYPVPEC 215 (294)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 215 (294)
...+..+..|.+.|..+...|+.|++++. |..|++||+|+.+... .++.+..
T Consensus 207 ----------~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~---------PI~~~~~ 267 (1118)
T KOG1275|consen 207 ----------FETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS---------PIQFPYG 267 (1118)
T ss_pred ----------CceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccC---------CcccccC
Confidence 56788999999999999999999999986 4568999999765322 2222222
Q ss_pred CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
..-+.|.|.-. ..+++.+..|...+-|..+.................+..++++++++.||.|..+|.|.+|.-
T Consensus 268 -P~flrf~Psl~-t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 268 -PQFLRFHPSLT-TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred -chhhhhccccc-ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 24577888765 578888889999999943322111122111234456999999999999999999999999963
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=8.3e-12 Score=96.99 Aligned_cols=262 Identities=11% Similarity=0.090 Sum_probs=157.0
Q ss_pred CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-------ccccceecccCcceEEEEeCCCCCceEEEeeC
Q 022590 2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK 74 (294)
Q Consensus 2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 74 (294)
|..-+|++.|..++-- ++.+-+++++.|.+|++|.+.. ..+..+++.|+.+|.++-|-. +.+++++ .
T Consensus 729 ~nf~GH~~~iRai~Ai---dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--c 802 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAI---DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--C 802 (1034)
T ss_pred ecccCcHHHhHHHHhc---ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--c
Confidence 4455788888887753 3333799999999999999853 235667889999999999988 6666654 5
Q ss_pred CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC-CCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCc
Q 022590 75 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 152 (294)
Q Consensus 75 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (294)
||-|.+||.-.+..+........| +.+..+..-|+ +..++..| +...+++++|.+...-..
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~---------------- 865 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC---------------- 865 (1034)
T ss_pred cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeeccccccee----------------
Confidence 788999999888776644321112 22333333332 34444444 788999999999832211
Q ss_pred eeeeceEEeecCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCce-------------eeeeeecCCC--
Q 022590 153 YVQFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTAD-------------ILQKYPVPEC-- 215 (294)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~-- 215 (294)
...+....+....+.+++. .|++++++-..|.|.+.|.++++....-.+.. ..+....|.-
T Consensus 866 --E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 866 --ELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAV 943 (1034)
T ss_pred --eEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEe
Confidence 1112222333445556655 39999999999999999999987432111100 0000001111
Q ss_pred ------CeeEEEEcccCC--------cceEEEEcCCCeEEEEeccCCCc--eeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590 216 ------DIWFIKFSCDFH--------YNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILS 279 (294)
Q Consensus 216 ------~i~~~~~~~~~~--------~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 279 (294)
.+..+...|... +.-+++....+.+.+|--..... ....++......+..++++--|-..-++.
T Consensus 944 nWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLa 1023 (1034)
T KOG4190|consen 944 NWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLA 1023 (1034)
T ss_pred eehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhc
Confidence 111111111110 13566676677777774322110 01112222344467888888887777888
Q ss_pred eccCCcEEE
Q 022590 280 CCEDGAIWR 288 (294)
Q Consensus 280 ~~~dg~i~v 288 (294)
|.+.|.|.+
T Consensus 1024 Gne~G~IaL 1032 (1034)
T KOG4190|consen 1024 GNEHGAIAL 1032 (1034)
T ss_pred cCCCCceee
Confidence 888888875
No 280
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.29 E-value=2e-11 Score=85.79 Aligned_cols=136 Identities=18% Similarity=0.296 Sum_probs=90.1
Q ss_pred cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccc
Q 022590 54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133 (294)
Q Consensus 54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 133 (294)
..|++++-+|...+++++|+.||.+.+||.++......+. ..|+.+++.+.|+|.++..|++++.||.+..||..+.-
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l--~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~ 257 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL--KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF 257 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH--HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence 4599999999777889999999999999998875433322 27999999999999999999999999999999988511
Q ss_pred ccccccee-ecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEec
Q 022590 134 TYVEKSFT-WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 191 (294)
Q Consensus 134 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd 191 (294)
........ ....-+....+........+......|+++...|..+++|+.-+.|++++
T Consensus 258 l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 258 LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 11100000 00000000000000011112223345555555699999999988888875
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.2e-09 Score=87.84 Aligned_cols=251 Identities=12% Similarity=0.100 Sum_probs=163.2
Q ss_pred cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
.|++|++.|.-+.|+ ...+ .|-++..+|.|.+|-+-.+.-...+. ...+.|.+++|.. +|..++..-.||.|.|
T Consensus 66 tLeGH~~sV~vvTWN--e~~Q-KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWN--ENNQ-KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIV 141 (1189)
T ss_pred hhccCcceEEEEEec--cccc-cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEE
Confidence 578999999999997 4454 79999999999999998886554442 2456799999999 8999999999999988
Q ss_pred EEcCCCceEEE-eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccc-cccccceeecCCCCCCCCceeeece
Q 022590 81 WNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW-TYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 81 wd~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
=.++..+.... ++ ......+.|++ +...++.+-.+|.+.++|....- ........... .
T Consensus 142 GsvdGNRIwgKeLk-----g~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-------------t 202 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELK-----GQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNG-------------T 202 (1189)
T ss_pred Eeeccceecchhcc-----hheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEee-------------e
Confidence 77754432211 11 12245788999 87878888889999999987621 11111110000 0
Q ss_pred EEeecCCCceeecce----------ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCc
Q 022590 159 FIASVHSNYVDCNRW----------LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 228 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~----------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (294)
..+...+..|..+.| +...|+++...|.+.+..-.+... +.+. .....+....|+++|
T Consensus 203 g~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-------Pvv~---dtgm~~vgakWnh~G-- 270 (1189)
T KOG2041|consen 203 GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-------PVVV---DTGMKIVGAKWNHNG-- 270 (1189)
T ss_pred eeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-------CeEE---ecccEeecceecCCC--
Confidence 011112222344444 345789999999988865543321 1111 112557788999999
Q ss_pred ceEEEEcCCC---------eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCCC
Q 022590 229 NAAAIGNREG---------KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 294 (294)
Q Consensus 229 ~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 294 (294)
.+|++++.+. .|.+|..-.. ....++ .....|++++|-..|-.+|.+ .|+.|++=+++|+
T Consensus 271 ~vLAvcG~~~da~~~~d~n~v~Fysp~G~---i~gtlk--vpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 271 AVLAVCGNDSDADEPTDSNKVHFYSPYGH---IVGTLK--VPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPE 339 (1189)
T ss_pred cEEEEccCcccccCccccceEEEeccchh---heEEEe--cCCceeeeeEEcCCceEEEEE-ecceEEEEeeccc
Confidence 5788776542 3444443222 222222 334679999998877777766 6888888777764
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.26 E-value=4.7e-09 Score=74.49 Aligned_cols=221 Identities=10% Similarity=0.036 Sum_probs=137.3
Q ss_pred ecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCC----CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590 30 GINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 103 (294)
Q Consensus 30 ~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 103 (294)
+....+.+|+.-+.. .+..+ +.+.|.|. ...+||.|+..|...+|...+.+....+.. .|...|.
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd--~snn~v~ 119 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD--VSNNDVT 119 (344)
T ss_pred cceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeec--ccccchh
Confidence 344567777765443 22222 34555552 345899999999999999987765444332 2444332
Q ss_pred EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc--eeeccee--cceEE
Q 022590 104 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY--VDCNRWL--GDFIL 179 (294)
Q Consensus 104 ~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~--~~~l~ 179 (294)
-+.=.-+....+..++.|.++++.++..... ....|... +..+.++ +.+++
T Consensus 120 ~~~r~cd~~~~~~i~sndht~k~~~~~~~s~-------------------------~~~~h~~~~~~ns~~~snd~~~~~ 174 (344)
T KOG4532|consen 120 LVKRYCDLKFPLNIASNDHTGKTMVVSGDSN-------------------------KFAVHNQNLTQNSLHYSNDPSWGS 174 (344)
T ss_pred hhhhhcccccceeeccCCcceeEEEEecCcc-------------------------cceeeccccceeeeEEcCCCceEE
Confidence 2211111223466778888888888775211 11112222 4455554 78999
Q ss_pred EeeCCCeEEEecCCCCCCCCCCCCceeee-eeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee-ecc
Q 022590 180 SKSVDNEIVLWEPKMKEQSPGEGTADILQ-KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RLS 257 (294)
Q Consensus 180 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~ 257 (294)
+.+....|..|.+...... ... ........-.+..|+... ..+|++..||.+.|||++........ .-.
T Consensus 175 ~Vgds~~Vf~y~id~~sey-------~~~~~~a~t~D~gF~~S~s~~~--~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 175 SVGDSRRVFRYAIDDESEY-------IENIYEAPTSDHGFYNSFSEND--LQFAVVFQDGTCAIYDVRNMATPMAEISST 245 (344)
T ss_pred EecCCCcceEEEeCCccce-------eeeeEecccCCCceeeeeccCc--ceEEEEecCCcEEEEEecccccchhhhccc
Confidence 9999999999998765321 112 222233445567788777 68999999999999999986532222 222
Q ss_pred ccccCCCeEEEEEccCCC--EEEEeccCCcEEEEecCC
Q 022590 258 HAQSKSPIRQTAMSYDGS--TILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 258 ~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~vw~~~~ 293 (294)
...|.+.++.+.|++.|. +|+..-.-+.+.+-|+++
T Consensus 246 rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 246 RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 446889999999998663 455554566788888764
No 283
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.24 E-value=2.1e-08 Score=79.58 Aligned_cols=234 Identities=12% Similarity=-0.001 Sum_probs=133.0
Q ss_pred CceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCc
Q 022590 22 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 101 (294)
Q Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 101 (294)
+. .+++++.+|.|..+|..+|+.+..+............ ++..++.++.+|.+..+|..+|+.+..... ...
T Consensus 65 ~~-~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~ 136 (377)
T TIGR03300 65 GG-KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSE 136 (377)
T ss_pred CC-EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeeecc----Cce
Confidence 44 6888889999999999999987766543322222332 345777888899999999999998876652 222
Q ss_pred eeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEe
Q 022590 102 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181 (294)
Q Consensus 102 v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 181 (294)
+.+.-.. .+..++.++.+|.+..||.++++...+.... .+......... ....++.++.+
T Consensus 137 ~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~--------------~~~~~~~~~~s----p~~~~~~v~~~ 196 (377)
T TIGR03300 137 VLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRV--------------TPALTLRGSAS----PVIADGGVLVG 196 (377)
T ss_pred eecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccC--------------CCceeecCCCC----CEEECCEEEEE
Confidence 3221111 2335666778999999999875432211100 00000000011 11224567788
Q ss_pred eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccccc
Q 022590 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS 261 (294)
Q Consensus 182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 261 (294)
..++.+..+|+++++............. ........+.-+|--....+++++.+|.++.+|.++++........ .
T Consensus 197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~--~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~- 271 (377)
T TIGR03300 197 FAGGKLVALDLQTGQPLWEQRVALPKGR--TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--S- 271 (377)
T ss_pred CCCCEEEEEEccCCCEeeeeccccCCCC--CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--C-
Confidence 8889999999988764221100000000 0000000000111101136777888999999999988754433321 1
Q ss_pred CCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
..... ..+..++.++.||.++.+|..+
T Consensus 272 ---~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 272 ---YQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred ---ccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 11122 2456788888899999888754
No 284
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.24 E-value=2.2e-10 Score=80.69 Aligned_cols=201 Identities=14% Similarity=0.233 Sum_probs=117.7
Q ss_pred eEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeec---------cCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590 56 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG---------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126 (294)
Q Consensus 56 v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~ 126 (294)
++.+.++. ...|+++..++.+......++.+...... +..|.++-.+=+.+- -++-++++..||.+.+
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc-cCCceEecCCCceEEE
Confidence 66676764 45677887777777665544433322211 001222221111111 3456999999999999
Q ss_pred EeccccccccccceeecCCCCCCCCceeeeceEEeecCCCcee-ecceecceEEEeeC-----CCeEEEecCCCCCCCCC
Q 022590 127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWLGDFILSKSV-----DNEIVLWEPKMKEQSPG 200 (294)
Q Consensus 127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~ 200 (294)
++.+.......+ .+. .|.+... +..-.++.+.++.. -+..+.|+++..+.
T Consensus 116 ~s~~~~~~~~~~-----------------i~~----~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t--- 171 (319)
T KOG4714|consen 116 FSTDKDLALMSR-----------------IPS----IHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT--- 171 (319)
T ss_pred EechHHHhhhhh-----------------ccc----ccccccccceeecccEEecCCcceEeeccceeeeccccccc---
Confidence 998862111100 000 0111000 00001333333321 23455666653321
Q ss_pred CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEE
Q 022590 201 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILS 279 (294)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s 279 (294)
+..-......+.+++-+|..+ ..+++|+.||.+-+||.+... .....+. .|+.++..+.|+| ++..|++
T Consensus 172 ------~~~~~~~~~~v~~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~-~p~S~l~--ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 172 ------LIPSKKALDAVTALCSHPAQQ-HLVCCGTDDGIVGLWDARNVA-MPVSLLK--AHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred ------ccccccccccchhhhCCcccc-cEEEEecCCCeEEEEEccccc-chHHHHH--HhhhhhhheeccCCCchheeE
Confidence 111111223488888888876 689999999999999999873 2333333 7889999999999 5679999
Q ss_pred eccCCcEEEEecCC
Q 022590 280 CCEDGAIWRWDAIP 293 (294)
Q Consensus 280 ~~~dg~i~vw~~~~ 293 (294)
+++||.+.-||..+
T Consensus 242 ~sedGslw~wdas~ 255 (319)
T KOG4714|consen 242 CSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCcEEEEcCCC
Confidence 99999999999764
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.24 E-value=1.5e-08 Score=72.73 Aligned_cols=189 Identities=17% Similarity=0.196 Sum_probs=109.9
Q ss_pred eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-------cCcceEEEEeCCCC-----CceEEEeeCCCcE
Q 022590 11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-------HGDSINEIRTQPLK-----PSLVVSASKDESV 78 (294)
Q Consensus 11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------h~~~v~~~~~~~~~-----~~~l~s~~~dg~i 78 (294)
=..++|+ ||+. +||.+...|+|+++|+.... +..+.. -..+|..|.|.+.. ...|+.-..+|.+
T Consensus 46 WRkl~WS--pD~t-lLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 46 WRKLAWS--PDCT-LLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred heEEEEC--CCCc-EEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 3568897 9998 99999999999999986432 222221 23567778776532 2356667778888
Q ss_pred EEEEcCCC-----ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc-----------EEEEeccccccccccceee
Q 022590 79 RLWNVQTG-----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT-----------VKIWSMKEFWTYVEKSFTW 142 (294)
Q Consensus 79 ~vwd~~~~-----~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~-----------i~~wd~~~~~~~~~~~~~~ 142 (294)
+-|-+..+ +....|.....+...|.++.++| ..++|++||.... +..|.+-..
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~---------- 190 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD---------- 190 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCC----------
Confidence 87776322 23344443334577899999999 6666666653221 222222221
Q ss_pred cCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEE
Q 022590 143 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 222 (294)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 222 (294)
.|.... +. .+..+.-......+..++-.++ ...........|..|..
T Consensus 191 -------------~Pyyk~------v~--~~~~~~~~~~~~~~~~~~~~~~------------~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 191 -------------SPYYKQ------VT--SSEDDITASSKRRGLLRIPSFK------------FFSRQGQEQDGIFKMSL 237 (282)
T ss_pred -------------CCcEEE------cc--ccCccccccccccceeecccee------------eeeccccCCCceEEEEE
Confidence 010000 00 0001111111111222211111 11222334567999999
Q ss_pred cccCCcceEEEEcCCCeEEEEeccCCC
Q 022590 223 SCDFHYNAAAIGNREGKIFVWELQSSP 249 (294)
Q Consensus 223 ~~~~~~~~l~~~~~dg~i~i~d~~~~~ 249 (294)
||++ ..|++...+|.|.+|++.+-.
T Consensus 238 SPdg--~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 238 SPDG--SLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCC--CEEEEEEcCCeEEEEecCcch
Confidence 9999 699999999999999998765
No 286
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=2e-07 Score=72.78 Aligned_cols=208 Identities=15% Similarity=0.174 Sum_probs=121.3
Q ss_pred ecCCCceEEEEee-cCCeEEEEEcCC-ccccce---ec----------ccCcceEEEEeCCCCCceEEEee-CCCcEEEE
Q 022590 18 CNVDGIPFLVAGG-INGIIRVIDVSN-EKLHKS---FV----------GHGDSINEIRTQPLKPSLVVSAS-KDESVRLW 81 (294)
Q Consensus 18 ~~~~~~~~l~~~~-~dg~i~iw~~~~-~~~~~~---~~----------~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vw 81 (294)
.+|+++ +|+++. .+|.|.++++.. +..... +. .......++.++| +++++++.. ....|.+|
T Consensus 94 ~~~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 94 VDPDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp ECTTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEE
T ss_pred EecCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEE
Confidence 348998 665554 689999999976 332221 11 1124578999999 777666653 34579999
Q ss_pred EcCCCc--eE--EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 82 NVQTGI--CI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 82 d~~~~~--~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
++.... .. ..+.. ........+.|+|+....+++...++.|.++++................+..
T Consensus 172 ~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~--------- 240 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG--------- 240 (345)
T ss_dssp EE-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT---------
T ss_pred EEeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc---------
Confidence 997654 32 22221 3556789999999434445666678899999998321111111000000000
Q ss_pred eEEeecCCCceeeccee--cceEEEee-CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590 158 VFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 234 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 234 (294)
.........+.++ +++|+++. ..+.|.+|++..... ....+...+........+.++|+++ .++++.
T Consensus 241 ----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-----~l~~~~~~~~~G~~Pr~~~~s~~g~-~l~Va~ 310 (345)
T PF10282_consen 241 ----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-----TLTLVQTVPTGGKFPRHFAFSPDGR-YLYVAN 310 (345)
T ss_dssp ----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-----TEEEEEEEEESSSSEEEEEE-TTSS-EEEEEE
T ss_pred ----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-----ceEEEEEEeCCCCCccEEEEeCCCC-EEEEEe
Confidence 0001134445554 77766654 567899999943211 3345556665556688999999995 244445
Q ss_pred cCCCeEEEEeccCC
Q 022590 235 NREGKIFVWELQSS 248 (294)
Q Consensus 235 ~~dg~i~i~d~~~~ 248 (294)
..++.|.+|+++..
T Consensus 311 ~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 311 QDSNTVSVFDIDPD 324 (345)
T ss_dssp TTTTEEEEEEEETT
T ss_pred cCCCeEEEEEEeCC
Confidence 57789999988543
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=3.5e-08 Score=78.30 Aligned_cols=229 Identities=12% Similarity=0.051 Sum_probs=133.7
Q ss_pred CCceEEEEeecCCeEEEEEcCCccccceecccCcceEE-EEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC
Q 022590 21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE-IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 99 (294)
Q Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 99 (294)
++. .++.++.+|.+..+|..+|+.+...... ..+.+ ... .+..++.++.+|.+..||.++|+.+..+.. ..
T Consensus 104 ~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~---~~ 175 (377)
T TIGR03300 104 DGG-LVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSR---VT 175 (377)
T ss_pred cCC-EEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEcc---CC
Confidence 344 6888889999999999999887665532 22222 112 234667778899999999999998877652 11
Q ss_pred Cce-----eEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee
Q 022590 100 NEV-----LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 174 (294)
Q Consensus 100 ~~v-----~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 174 (294)
... ...... + ..++.+..+|.+..+|.+++....+....... .. . ...... .........
T Consensus 176 ~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~--g~---~----~~~~~~---~~~~~p~~~ 240 (377)
T TIGR03300 176 PALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPK--GR---T----ELERLV---DVDGDPVVD 240 (377)
T ss_pred CceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCC--CC---C----chhhhh---ccCCccEEE
Confidence 111 111222 3 35777888899999999875432211110000 00 0 000000 000111123
Q ss_pred cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590 175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 254 (294)
Q Consensus 175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (294)
++.++.++.+|.+..||.++++. +-..... ...... ..+ ..+++++.+|.+..+|..+++.+...
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~---------~W~~~~~--~~~~p~--~~~--~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRV---------LWKRDAS--SYQGPA--VDD--NRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcE---------EEeeccC--CccCce--EeC--CEEEEECCCCeEEEEECCCCcEEEcc
Confidence 67888888999999999988763 2111111 111111 223 46788889999999999988744332
Q ss_pred -eccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 255 -RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 255 -~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.+.. ....+... .+..|++++.+|.|+++|.++
T Consensus 306 ~~~~~----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 306 DELKY----RQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred ccccC----CccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 1111 11122222 456888999999999999764
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.21 E-value=3.9e-08 Score=85.30 Aligned_cols=261 Identities=14% Similarity=0.140 Sum_probs=152.2
Q ss_pred ceeEEEEEeecCCCceEEEEeecCC--eEEEEEcCCcc---ccceec-----ccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEK---LHKSFV-----GHGDSINEIRTQPLKPSLVVSASKDESV 78 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~---~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~dg~i 78 (294)
..+...+|....+.- +++.+.... .|.+-...... .+..+. ...+.|.++.+.+ +...++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i-~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~-d~~~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSI-YFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLA-DSESLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeE-EEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEecc-CCCcEEEEECCceE
Confidence 456777777433332 444444433 24443332222 222232 2346899999999 77788889999999
Q ss_pred EEE----EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc-------------ee
Q 022590 79 RLW----NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-------------FT 141 (294)
Q Consensus 79 ~vw----d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------~~ 141 (294)
.+. +..+...-. .- .-...|.+++|+| ++.+|+....++++.+-. +++....+.. +.
T Consensus 100 ~~~~~~~~~~~~~~E~-VG---~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVG 173 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEI-VG---SVDSGILAASWSP-DEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVG 173 (928)
T ss_pred EEEEccCCCCCceeEE-EE---EEcCcEEEEEECC-CcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeec
Confidence 999 544433222 11 2567899999999 888899988888887764 2222211111 11
Q ss_pred ecCCCCCCCCceee-------ec------eEEeecCCCceeeccee--cceEEEeeC---C---CeEEEecCCCCCCCCC
Q 022590 142 WTDLPSKFPTKYVQ-------FP------VFIASVHSNYVDCNRWL--GDFILSKSV---D---NEIVLWEPKMKEQSPG 200 (294)
Q Consensus 142 ~~~~~~~~~~~~~~-------~~------~~~~~~~~~~i~~~~~~--~~~l~~~~~---d---~~i~iwd~~~~~~~~~ 200 (294)
|......+.....+ .| ...+. ..+.-..++|- |.+|++.+. . +.+|+|+-. +..
T Consensus 174 WGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L--- 248 (928)
T PF04762_consen 174 WGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GEL--- 248 (928)
T ss_pred cCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceE---
Confidence 11111111111100 11 11122 44456677784 889998774 2 579999975 321
Q ss_pred CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC---CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEE
Q 022590 201 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI 277 (294)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 277 (294)
...-....+--..++|.|.| +++|+... ...|.+|.-+..+ .....++.......|..++|++|+..|
T Consensus 249 ------~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~~~v~~l~Wn~ds~iL 319 (928)
T PF04762_consen 249 ------QSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEEEKVIELAWNSDSEIL 319 (928)
T ss_pred ------EeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCCceeeEEEECCCCCEE
Confidence 11111111222357999999 57777653 3557777755432 122333333455689999999999999
Q ss_pred EEeccCCcEEEEecC
Q 022590 278 LSCCEDGAIWRWDAI 292 (294)
Q Consensus 278 ~s~~~dg~i~vw~~~ 292 (294)
|..-.|. |.+|-..
T Consensus 320 Av~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 320 AVWLEDR-VQLWTRS 333 (928)
T ss_pred EEEecCC-ceEEEee
Confidence 9987665 9999754
No 289
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=3.4e-07 Score=68.03 Aligned_cols=242 Identities=12% Similarity=0.135 Sum_probs=140.0
Q ss_pred CCeEEEEEcCCcc--c-cceecccCcceEEEEeCCCCCceEEEeeC---CCcEEEEEcCC--CceEEEeeccCCCCCcee
Q 022590 32 NGIIRVIDVSNEK--L-HKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQT--GICILIFAGAGGHRNEVL 103 (294)
Q Consensus 32 dg~i~iw~~~~~~--~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~ 103 (294)
+.-|++|++++.. . ...+-.+.+.++-|+|+| +.+.|.++.. +|.|..|.++. |+.. .+........+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEE-EeeccccCCCCCe
Confidence 4679999997432 1 112234667889999999 8778887754 47788887764 4432 2221111233448
Q ss_pred EEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEE
Q 022590 104 SVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 180 (294)
Q Consensus 104 ~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 180 (294)
.+++++ ++++++++. .-|.|.++-++......... .........+. ......| +....+. ++++++
T Consensus 93 yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v-~~~~h~g~~p~------~rQ~~~h---~H~a~~tP~~~~l~v 161 (346)
T COG2706 93 YVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVV-QVVKHTGSGPH------ERQESPH---VHSANFTPDGRYLVV 161 (346)
T ss_pred EEEECC-CCCEEEEEEccCceEEEEEcccCCccccce-eeeecCCCCCC------ccccCCc---cceeeeCCCCCEEEE
Confidence 899999 777777765 45889999997732111110 00000000000 0000001 3333343 667776
Q ss_pred eeC-CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC--Cceeeeecc
Q 022590 181 KSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS--PPVLIARLS 257 (294)
Q Consensus 181 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~ 257 (294)
..- ..+|.+|++..+...... ...+ .+......+.|+|+++..|+ +.-.+++|.+|..+.. +...+..+.
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~-----~~~v-~~G~GPRHi~FHpn~k~aY~-v~EL~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPAD-----PAEV-KPGAGPRHIVFHPNGKYAYL-VNELNSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred eecCCceEEEEEcccCcccccc-----cccc-CCCCCcceEEEcCCCcEEEE-EeccCCEEEEEEEcCCCceEEEeeeec
Confidence 653 357999999966542211 1111 44567889999999974333 3446889999999874 222222221
Q ss_pred ----ccccCCCeEEEEEccCCCEEEEecc-CCcEEEEecCC
Q 022590 258 ----HAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAIP 293 (294)
Q Consensus 258 ----~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~~ 293 (294)
.-.......++.++|||++|.++.. ...|-+|.+.+
T Consensus 235 tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 235 TLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred cCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 1122345778999999999988742 23577776653
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=6.3e-08 Score=85.50 Aligned_cols=229 Identities=13% Similarity=0.116 Sum_probs=129.1
Q ss_pred eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc-----------------CcceEEEEeCCCCCceEEEee
Q 022590 11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-----------------GDSINEIRTQPLKPSLVVSAS 73 (294)
Q Consensus 11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h-----------------~~~v~~~~~~~~~~~~l~s~~ 73 (294)
-..+++. ++++.+.++-..++.|+++|..++.. .++.+- -.....++++|.++.++++.+
T Consensus 626 P~GIavd--~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 626 PQGLAYN--AKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CcEEEEe--CCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 3566665 66662344445567899999876542 222110 113467999996677778888
Q ss_pred CCCcEEEEEcCCCceEEEeecc------CC------CCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccccee
Q 022590 74 KDESVRLWNVQTGICILIFAGA------GG------HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 141 (294)
Q Consensus 74 ~dg~i~vwd~~~~~~~~~~~~~------~~------~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 141 (294)
.++.|++||..++.... +... .+ .-.....|+++|+++.++++-+.++.|++||+.++..... ..
T Consensus 703 ~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~--~g 779 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL--AG 779 (1057)
T ss_pred CCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE--Ee
Confidence 88999999997765432 2110 01 1124577999993344666777789999999886432100 00
Q ss_pred ecCC-CCC-CCCcee-eeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCcee----eeeeec
Q 022590 142 WTDL-PSK-FPTKYV-QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI----LQKYPV 212 (294)
Q Consensus 142 ~~~~-~~~-~~~~~~-~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~ 212 (294)
.... +.. ...... .........| ...++++ |+++++-..++.|++||..++........... -.....
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~---P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a 856 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQH---PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKA 856 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccC---CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccc
Confidence 0000 000 000000 0000001112 2345554 67888888899999999976542100000000 000111
Q ss_pred CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc
Q 022590 213 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 250 (294)
Q Consensus 213 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (294)
.-.....+++++++ .++++-+.++.|++||+++.+.
T Consensus 857 ~l~~P~GIavd~dG--~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 857 QLSEPAGLALGENG--RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCceEEEEeCCC--CEEEEECCCCEEEEEECCCCcc
Confidence 12346789999998 5788888999999999988753
No 291
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.19 E-value=6e-08 Score=71.85 Aligned_cols=216 Identities=19% Similarity=0.158 Sum_probs=127.3
Q ss_pred CCeEEEEEcCCccccceecccC--cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590 32 NGIIRVIDVSNEKLHKSFVGHG--DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 109 (294)
Q Consensus 32 dg~i~iw~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~ 109 (294)
+|.|..||..+++.+....--. ....+... + ++..+++++.++.|..||..+|+.+..+.. ..++......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~----~~~~~~~~~~- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL----PGPISGAPVV- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC----SSCGGSGEEE-
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec----cccccceeee-
Confidence 6899999999998887775311 11121122 2 345677778999999999999999888773 2222111222
Q ss_pred CCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC-CceeecceecceEEEeeCCCeEE
Q 022590 110 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWLGDFILSKSVDNEIV 188 (294)
Q Consensus 110 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~~~~~d~~i~ 188 (294)
.+..++++..++.++.+|..++....... ........ .......+.++.++.+..++.|.
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIY------------------LTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLV 135 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEE------------------E-SSCTCSTB--SEEEEETTEEEEEETCSEEE
T ss_pred -cccccccccceeeeEecccCCcceeeeec------------------cccccccccccccCceEecCEEEEEeccCcEE
Confidence 33446666688899999988854321100 00000000 11122333478888888899999
Q ss_pred EecCCCCCCCCCCCCceeeeeeecCCCC----------eeEEEEcccCCcceEEEEcCCCe-EEEEeccCCCceeeeecc
Q 022590 189 LWEPKMKEQSPGEGTADILQKYPVPECD----------IWFIKFSCDFHYNAAAIGNREGK-IFVWELQSSPPVLIARLS 257 (294)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~ 257 (294)
.+|+++++ .+-..+..... +..-....++ .++.+..++. +.+ |+.+++... ...
T Consensus 136 ~~d~~tG~---------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~g~~~~~-d~~tg~~~w--~~~ 200 (238)
T PF13360_consen 136 ALDPKTGK---------LLWKYPVGEPRGSSPISSFSDINGSPVISDG---RVYVSSGDGRVVAV-DLATGEKLW--SKP 200 (238)
T ss_dssp EEETTTTE---------EEEEEESSTT-SS--EEEETTEEEEEECCTT---EEEEECCTSSEEEE-ETTTTEEEE--EEC
T ss_pred EEecCCCc---------EEEEeecCCCCCCcceeeecccccceEEECC---EEEEEcCCCeEEEE-ECCCCCEEE--Eec
Confidence 99999886 33333332211 1111122222 5666666775 555 999986433 211
Q ss_pred ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 258 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 258 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
. ..+.. ...+++..|+.++.++.|..||+++
T Consensus 201 ~----~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 201 I----SGIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp S----S-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred C----CCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 1 12222 1346777888888999999999876
No 292
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.17 E-value=2.4e-07 Score=71.02 Aligned_cols=225 Identities=13% Similarity=0.051 Sum_probs=125.8
Q ss_pred CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEe-e---------CCCcEEEEEcCCCceEEEeeccCC----C
Q 022590 33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-S---------KDESVRLWNVQTGICILIFAGAGG----H 98 (294)
Q Consensus 33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~---------~dg~i~vwd~~~~~~~~~~~~~~~----~ 98 (294)
++|.+.|.++++.+.++..-..+- .+ ++| +++.|+.+ + .+..|.+||..+.+.+..+..... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 899999999999888887543333 34 999 66655555 4 588999999999999988874211 1
Q ss_pred CCceeEEEEecCCCceEEeee-c-CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc
Q 022590 99 RNEVLSVDFHPSDIYRIASCG-M-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 176 (294)
Q Consensus 99 ~~~v~~l~~~~~~~~~l~~~~-~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 176 (294)
......++++| ++++|++.. . +..+.+.|+.+.+. +..... ++...-...+..
T Consensus 104 ~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kv-----------------------v~ei~v-p~~~~vy~t~e~ 158 (352)
T TIGR02658 104 GTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAF-----------------------VRMMDV-PDCYHIFPTAND 158 (352)
T ss_pred cCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcE-----------------------EEEEeC-CCCcEEEEecCC
Confidence 22345789999 777777654 3 78999999998432 222221 111111111122
Q ss_pred eEEEeeCCCeEEEecCCCCCCCCCCCCceeeee--eecCCCCeeEEEEcc-cCCcceEEEEcCCCeEEEEeccCCCceee
Q 022590 177 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQK--YPVPECDIWFIKFSC-DFHYNAAAIGNREGKIFVWELQSSPPVLI 253 (294)
Q Consensus 177 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 253 (294)
.+.+-+.||......+....... ......+.. ......+ .|.+ ++ .++....+ |.|.+.|+...+....
T Consensus 159 ~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~rP----~~~~~dg--~~~~vs~e-G~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 159 TFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINHP----AYSNKSG--RLVWPTYT-GKIFQIDLSSGDAKFL 230 (352)
T ss_pred ccEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccCC----ceEcCCC--cEEEEecC-CeEEEEecCCCcceec
Confidence 22233445544443333221100 000000000 0000111 3455 55 45666655 9999999765432222
Q ss_pred eecc---c-----cccCCCeEEEEEccCCCEEEEec----------cCCcEEEEecCC
Q 022590 254 ARLS---H-----AQSKSPIRQTAMSYDGSTILSCC----------EDGAIWRWDAIP 293 (294)
Q Consensus 254 ~~~~---~-----~~~~~~v~~~~~s~~~~~l~s~~----------~dg~i~vw~~~~ 293 (294)
..+. . .-..+.+.-++++|+++.++... ..+.|.++|.++
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 2211 0 11233445599999999888742 124688888764
No 293
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.17 E-value=2.4e-11 Score=95.83 Aligned_cols=209 Identities=14% Similarity=0.196 Sum_probs=135.4
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEee----CCCcEEEEE
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSAS----KDESVRLWN 82 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----~dg~i~vwd 82 (294)
.-+.|+++..+.+.. ++++|..+|.|.+-...... ......+|....++++|++.|.+.||+|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~c-IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRC-ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchh-hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 356788888666644 89999999999998875432 22345678899999999998888888873 467799999
Q ss_pred cCCC--ceEE--EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 83 VQTG--ICIL--IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 83 ~~~~--~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
+.++ .+.. .|.. +......+++|.. +..++.+|.....++++|++....... .
T Consensus 136 i~s~ltvPke~~~fs~--~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~--------------------s 192 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSS--STLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVS--------------------S 192 (783)
T ss_pred cccccCCCcccccccc--ccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhh--------------------h
Confidence 9877 2221 2221 2334566899985 888899999999999999996211100 0
Q ss_pred EEeecCCCceeecceecceEEEeeCCCeEEEec-CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590 159 FIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE-PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 237 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 237 (294)
...+.|. .++---|.++++++-. ||.|.+|| .+.-+... ...+.........+..++|+|...+...+..-..
T Consensus 193 vnTk~vq-G~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl----~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS 266 (783)
T KOG1008|consen 193 VNTKYVQ-GITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL----QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS 266 (783)
T ss_pred hhhhhcc-cceecCCCCCceeccc-cCceeeccchhhhccHH----HHHhhCCCCcccceeeEEeccCCcchhhhhccCc
Confidence 0001111 1222233578888755 99999999 44333210 0001111111235888999998875555555667
Q ss_pred CeEEEEeccC
Q 022590 238 GKIFVWELQS 247 (294)
Q Consensus 238 g~i~i~d~~~ 247 (294)
++|+++|+..
T Consensus 267 ~tIrlydi~~ 276 (783)
T KOG1008|consen 267 ITIRLYDICV 276 (783)
T ss_pred ceEEEecccc
Confidence 8899999854
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=1.7e-07 Score=81.48 Aligned_cols=244 Identities=12% Similarity=0.156 Sum_probs=152.1
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEE----EcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVI----DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
..+.|.++.+- ++.. .++.+..+|.|.+. +..+.. +.....-...|.+++||| |..+|+..+.++++.+.+
T Consensus 74 ~~~~ivs~~yl--~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYL--ADSE-SLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSP-DEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEec--cCCC-cEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEe
Confidence 34577777776 7776 78888999999999 443332 223334567899999999 889999999899887764
Q ss_pred cCCCceE------------------------EEeeccCC---------------------CCCceeEEEEecCCCceEEe
Q 022590 83 VQTGICI------------------------LIFAGAGG---------------------HRNEVLSVDFHPSDIYRIAS 117 (294)
Q Consensus 83 ~~~~~~~------------------------~~~~~~~~---------------------~~~~v~~l~~~~~~~~~l~~ 117 (294)
- +.+.+ ..|++..+ +...-..|+|-. ||.++|+
T Consensus 149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAV 226 (928)
T PF04762_consen 149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAV 226 (928)
T ss_pred c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEE
Confidence 2 11111 11111000 222446788987 8999998
Q ss_pred eec---C---CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce--ecceEEEeeC---CCe
Q 022590 118 CGM---D---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKSV---DNE 186 (294)
Q Consensus 118 ~~~---d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~---d~~ 186 (294)
.+. . ..++||+-...- ......-.+--.+++| +|+++++.-. ...
T Consensus 227 ss~~~~~~~~R~iRVy~ReG~L------------------------~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSREGEL------------------------QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred EEEEcCCCceeEEEEECCCceE------------------------EeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 875 3 468888876310 0001111111234566 3888887654 345
Q ss_pred EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeE
Q 022590 187 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR 266 (294)
Q Consensus 187 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 266 (294)
|.+|.-+..+ +....-.+......+..+.|++++ .+||.-..|. |.+|-..+...-....+.... ...+.
T Consensus 283 VvFfErNGLr------hgeF~l~~~~~~~~v~~l~Wn~ds--~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~ 352 (928)
T PF04762_consen 283 VVFFERNGLR------HGEFTLRFDPEEEKVIELAWNSDS--EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVN 352 (928)
T ss_pred EEEEecCCcE------eeeEecCCCCCCceeeEEEECCCC--CEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCC
Confidence 7777755433 111111122345678999999999 5888876555 999999988654444444322 23455
Q ss_pred EEEEccCC-CEEEEeccCCcEEEEec
Q 022590 267 QTAMSYDG-STILSCCEDGAIWRWDA 291 (294)
Q Consensus 267 ~~~~s~~~-~~l~s~~~dg~i~vw~~ 291 (294)
.+.|+|.. ..|...+.+|.+..+++
T Consensus 353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 353 FVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred ceEECCCCCCEEEEEecCCcEEEEEE
Confidence 59999964 45777777677766654
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=9.3e-10 Score=83.45 Aligned_cols=210 Identities=15% Similarity=0.093 Sum_probs=145.1
Q ss_pred ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec-CCcEEEEec
Q 022590 51 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSM 129 (294)
Q Consensus 51 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~wd~ 129 (294)
.|.+.|+.+.-.. .+++.+++.||.++.|--..-.-+.....+..|...|.+++.+- ++.++.+.+. |..++++|+
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEe
Confidence 3788888877654 67999999999999998754333333333346889999999997 8888999777 999999999
Q ss_pred cccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceec----ceEEEeeCCCeEEEecCCCCCCCCCCCCce
Q 022590 130 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG----DFILSKSVDNEIVLWEPKMKEQSPGEGTAD 205 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 205 (294)
......... .+..-++.+..+.-.| ..-++.-.++.+.++|-....+ +
T Consensus 84 En~Dminmi---------------------KL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q 135 (558)
T KOG0882|consen 84 ENFDMINMI---------------------KLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------Q 135 (558)
T ss_pred eccchhhhc---------------------ccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------c
Confidence 874321110 1111111111111112 2333445678999999886542 2
Q ss_pred eeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC-C---Cceeeeec-------cccccCCCeEEEEEccCC
Q 022590 206 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-S---PPVLIARL-------SHAQSKSPIRQTAMSYDG 274 (294)
Q Consensus 206 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~~-------~~~~~~~~v~~~~~s~~~ 274 (294)
.......|..+|..+.+.+.+ ..+++....|.|.-|.... . +......+ .....+....++.|+|+|
T Consensus 136 ~~~fkklH~sPV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g 213 (558)
T KOG0882|consen 136 DGYFKKLHFSPVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG 213 (558)
T ss_pred cceecccccCceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc
Confidence 344456678899999999998 4788899999999999873 1 10011111 122445678999999999
Q ss_pred CEEEEeccCCcEEEEecCC
Q 022590 275 STILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 275 ~~l~s~~~dg~i~vw~~~~ 293 (294)
..+.+-+.|..|+++++++
T Consensus 214 ~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 214 AQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred CcccccCcccEEEEEEecc
Confidence 9999999999999999875
No 296
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.16 E-value=2.8e-09 Score=87.74 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=131.6
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 104 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 104 (294)
.++.|+.-..+..+|+.+.+..+...-....|+-|+. +++++.+|...|+|.+-|..+.+.+..+. .|++.|.+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---aHs~siSD 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFD---AHSGSISD 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeee---ccccceee
Confidence 5777777778888899888877766655556777766 45899999999999999999999999999 79999999
Q ss_pred EEEecCCCceEEeeec---------CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-
Q 022590 105 VDFHPSDIYRIASCGM---------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 174 (294)
Q Consensus 105 l~~~~~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 174 (294)
+.. .+++|+++|. |.-|+|||+|..+...- +..+.++ .-+.|.
T Consensus 223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-----------------------I~~~~~P-~flrf~P 275 (1118)
T KOG1275|consen 223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-----------------------IQFPYGP-QFLRFHP 275 (1118)
T ss_pred eec---cCCeEEEeecccccccccccchhhhhhhhhhhccCC-----------------------cccccCc-hhhhhcc
Confidence 887 4567777764 66789999998432211 1111111 222332
Q ss_pred --cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590 175 --GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 244 (294)
Q Consensus 175 --~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d 244 (294)
...+++++..|...+-|..+... +.............+..+.+++++ ..++.|..+|.|.+|.
T Consensus 276 sl~t~~~V~S~sGq~q~vd~~~lsN-----P~~~~~~v~p~~s~i~~fDiSsn~--~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 276 SLTTRLAVTSQSGQFQFVDTATLSN-----PPAGVKMVNPNGSGISAFDISSNG--DALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccceEEEEecccceeeccccccCC-----CccceeEEccCCCcceeEEecCCC--ceEEEecccCcEeeec
Confidence 56788889999999999554432 111233333344558899999998 6999999999999998
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.8e-10 Score=89.77 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=121.4
Q ss_pred cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee
Q 022590 95 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 174 (294)
Q Consensus 95 ~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 174 (294)
+.+|...|..++--. +.+-+++++.|.++++|.++....... ......+...|..+|..+.|-
T Consensus 731 f~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~----------------tsaCQfTY~aHkk~i~~igfL 793 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIG----------------TSACQFTYQAHKKPIHDIGFL 793 (1034)
T ss_pred ccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccc----------------cceeeeEhhhccCcccceeee
Confidence 338999999988765 677799999999999999987322111 123456778899999999997
Q ss_pred cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE-cCCCeEEEEeccCCCceee
Q 022590 175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSPPVLI 253 (294)
Q Consensus 175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~ 253 (294)
.+.-..++.||.|.+||.--+..... . ......+....+..-++-...++.+| +...+|+++|.+..+....
T Consensus 794 ~~lr~i~ScD~giHlWDPFigr~Laq------~-~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E 866 (1034)
T KOG4190|consen 794 ADLRSIASCDGGIHLWDPFIGRLLAQ------M-EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE 866 (1034)
T ss_pred eccceeeeccCcceeecccccchhHh------h-hcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence 55444556789999999876543110 0 11111223333444444222344444 7899999999999876555
Q ss_pred eecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 254 ARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 254 ~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.+.- ..+....+++++..|.|+.++.+-.+|+|-+.|.++
T Consensus 867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence 5443 224446789999999999999999999999998765
No 298
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.7e-09 Score=77.79 Aligned_cols=95 Identities=15% Similarity=0.241 Sum_probs=81.3
Q ss_pred EEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCce
Q 022590 35 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 114 (294)
Q Consensus 35 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 114 (294)
+++.+..+.+....+.+|...|.+++|+|.+..++..++.+.+|+|.|+++...+..+. .+ ..+++++|.-++.++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---cc-CCceeeeeccCCcce
Confidence 55555556666667778889999999999666689999999999999999999888887 35 789999999978899
Q ss_pred EEeeecCCcEEEEeccccc
Q 022590 115 IASCGMDNTVKIWSMKEFW 133 (294)
Q Consensus 115 l~~~~~dg~i~~wd~~~~~ 133 (294)
+..|-..|.|.+||++...
T Consensus 251 IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eEEeccCceEEEEEccCCC
Confidence 9999999999999999844
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.14 E-value=1.3e-10 Score=59.25 Aligned_cols=39 Identities=36% Similarity=0.681 Sum_probs=36.2
Q ss_pred ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 43 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 43 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
++++.++++|.++|++|+|+| ++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 356788999999999999999 899999999999999997
No 300
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=4.5e-08 Score=76.56 Aligned_cols=260 Identities=10% Similarity=0.081 Sum_probs=144.9
Q ss_pred eEEEEEeecCCCceEEEEeecC-----------CeEEEEEcCCccccceeccc--CcceE-EEEeCCCCCceEEEeeCCC
Q 022590 11 FYTVSWACNVDGIPFLVAGGIN-----------GIIRVIDVSNEKLHKSFVGH--GDSIN-EIRTQPLKPSLVVSASKDE 76 (294)
Q Consensus 11 v~~~~~~~~~~~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~h--~~~v~-~~~~~~~~~~~l~s~~~dg 76 (294)
|.-+.|| |..+ ||++-+.. ..++|||+.+|...+.+... ...+. -..||. +++++|--.. .
T Consensus 252 Vq~idfS--P~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~ 326 (698)
T KOG2314|consen 252 VQFIDFS--PNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-N 326 (698)
T ss_pred ceeeecC--Cccc-eEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-c
Confidence 4456665 8888 99987632 57999999999998888753 22333 367998 8888887666 5
Q ss_pred cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC-----CcEEEEecccccccccc--------ceeec
Q 022590 77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEK--------SFTWT 143 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~--------~~~~~ 143 (294)
.|.||+..+-.++..-. -.-..|....|+| .+++||-=... ..+.+-.+.+....... .+.|+
T Consensus 327 sisIyEtpsf~lld~Ks---lki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ 402 (698)
T KOG2314|consen 327 SISIYETPSFMLLDKKS---LKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ 402 (698)
T ss_pred eEEEEecCceeeecccc---cCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEec
Confidence 68899876643332211 1345688888998 66655532210 11222222221111000 01111
Q ss_pred C-----------CCCCC-CCceeeeceEEeec---------CCCceeeccee--cceEEEeeC---CCeEEEecCCCCCC
Q 022590 144 D-----------LPSKF-PTKYVQFPVFIASV---------HSNYVDCNRWL--GDFILSKSV---DNEIVLWEPKMKEQ 197 (294)
Q Consensus 144 ~-----------~~~~~-~~~~~~~~~~~~~~---------~~~~i~~~~~~--~~~l~~~~~---d~~i~iwd~~~~~~ 197 (294)
. ..... ........+..+.. -...|...+|. |+.+++-+. ..++.+|.+.+...
T Consensus 403 k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 403 KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK 482 (698)
T ss_pred cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence 1 00000 00001111111111 22345555664 776665543 35688898874221
Q ss_pred CCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE---cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590 198 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG---NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 274 (294)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (294)
...++..+.. ...+.+.|+|.|. +++.+ +..|.+.++|+........... .| ...+.+.|.|.|
T Consensus 483 -----~~~lVk~~dk--~~~N~vfwsPkG~--fvvva~l~s~~g~l~F~D~~~a~~k~~~~~---eh-~~at~veWDPtG 549 (698)
T KOG2314|consen 483 -----KPSLVKELDK--KFANTVFWSPKGR--FVVVAALVSRRGDLEFYDTDYADLKDTASP---EH-FAATEVEWDPTG 549 (698)
T ss_pred -----chhhhhhhcc--cccceEEEcCCCc--EEEEEEecccccceEEEecchhhhhhccCc---cc-cccccceECCCC
Confidence 2223443332 4466899999994 55543 4678999999986432222222 22 346789999999
Q ss_pred CEEEEeccCC------cEEEEecC
Q 022590 275 STILSCCEDG------AIWRWDAI 292 (294)
Q Consensus 275 ~~l~s~~~dg------~i~vw~~~ 292 (294)
+|+++++.-+ --++|++.
T Consensus 550 RYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 550 RYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CEEEEeeehhhhccccceEEEEee
Confidence 9999987533 34566543
No 301
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.06 E-value=2.2e-07 Score=71.53 Aligned_cols=213 Identities=13% Similarity=0.045 Sum_probs=143.3
Q ss_pred cCCCceEEEEeecCCeEEEEEcCCccccceecc-----------cCcceEEEE-eCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590 19 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-----------HGDSINEIR-TQPLKPSLVVSASKDESVRLWNVQTG 86 (294)
Q Consensus 19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------h~~~v~~~~-~~~~~~~~l~s~~~dg~i~vwd~~~~ 86 (294)
+.||+..++. .-|.|.+||.++.+..+.--+ ...+..-+. |++.++++++..+. |...+.+...+
T Consensus 275 nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 3578733333 457899999887654321111 111222233 56667889988887 77888877666
Q ss_pred ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
-.++. +|.+.|.-..+.. +++-++.|..|| .+-++|.+... +......-
T Consensus 352 ~~iqv-----~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e------------------------~kr~e~~l 401 (668)
T COG4946 352 YSIQV-----GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE------------------------VKRIEKDL 401 (668)
T ss_pred eeEEc-----CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce------------------------EEEeeCCc
Confidence 55443 5788898888887 666899999999 89999999742 23344455
Q ss_pred Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC----e
Q 022590 166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG----K 239 (294)
Q Consensus 166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg----~ 239 (294)
+.|.++..+ |..++++.....|-+.|+.+++. ..--+....-|+...|+|++ +++|-+-.+| .
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv---------~~idkS~~~lItdf~~~~ns--r~iAYafP~gy~tq~ 470 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV---------RLIDKSEYGLITDFDWHPNS--RWIAYAFPEGYYTQS 470 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe---------eEecccccceeEEEEEcCCc--eeEEEecCcceeeee
Confidence 666666665 78899988889999999998862 11222334668899999998 6888877665 5
Q ss_pred EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590 240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 280 (294)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 280 (294)
|+++|+..++........ ++ =.+-+|.||+++|.--
T Consensus 471 Iklydm~~~Kiy~vTT~t--a~---DfsPaFD~d~ryLYfL 506 (668)
T COG4946 471 IKLYDMDGGKIYDVTTPT--AY---DFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEEEecCCCeEEEecCCc--cc---ccCcccCCCCcEEEEE
Confidence 899999988632222211 21 2345789999987644
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.05 E-value=1.7e-09 Score=80.76 Aligned_cols=98 Identities=17% Similarity=0.351 Sum_probs=78.8
Q ss_pred CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC
Q 022590 32 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 111 (294)
Q Consensus 32 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 111 (294)
...+.+|+...+. ...+-+|-..+++++|+| |+++++++..|..|++-....-..+..|.. ||+.-|..++.-+
T Consensus 131 ~~~~di~s~~~~~-~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~-- 204 (390)
T KOG3914|consen 131 VYSFDILSADSGR-CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTD-- 204 (390)
T ss_pred ceeeeeecccccC-cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeecc--
Confidence 3455555555433 344567999999999999 889999999999999988877666666654 8999999999985
Q ss_pred CceEEeeecCCcEEEEeccccccc
Q 022590 112 IYRIASCGMDNTVKIWSMKEFWTY 135 (294)
Q Consensus 112 ~~~l~~~~~dg~i~~wd~~~~~~~ 135 (294)
+..|++++.|+++++||+++++..
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcc
Confidence 455999999999999999996654
No 303
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.2e-07 Score=72.77 Aligned_cols=198 Identities=16% Similarity=0.233 Sum_probs=126.2
Q ss_pred ccCceeEEEEEeecCCCceEEEE-----eecCCeEEEEEcCCcccccee---cccCcceEEEEeCCCCCceEEEee--CC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVA-----GGINGIIRVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSAS--KD 75 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~--~d 75 (294)
-|...|+.+.+++.|.-. .+|+ ++.-+.|+||..........+ .-....=..+.|++.+..+|+.++ -|
T Consensus 163 l~~~~i~~f~lSpgp~~~-~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPP-FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eeccceeeEEecCCCCCc-eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeec
Confidence 356678888888554443 5554 345578999988643322211 112223345778874444544443 23
Q ss_pred ---------CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEe--eecCCcEEEEeccccccccccceeecC
Q 022590 76 ---------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS--CGMDNTVKIWSMKEFWTYVEKSFTWTD 144 (294)
Q Consensus 76 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~ 144 (294)
.++.+.+++.......+. -.++|.++.|+| ++..+++ |-.-..+.++|++.
T Consensus 242 ktn~SYYGEq~Lyll~t~g~s~~V~L~----k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~------------- 303 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQGESVSVPLL----KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRG------------- 303 (566)
T ss_pred CCCccccccceEEEEEecCceEEEecC----CCCCceEEEECC-CCCEEEEEEecccceEEEEcCCC-------------
Confidence 357777876444444443 689999999999 6654544 45667899999986
Q ss_pred CCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590 145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 219 (294)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (294)
.+ .+...+++=+++-|+ |++++.++.+ |.+-+||+.+.+ .+..+... .-+-
T Consensus 304 -----------~~--v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K---------~i~~~~a~--~tt~ 359 (566)
T KOG2315|consen 304 -----------KP--VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK---------LIAKFKAA--NTTV 359 (566)
T ss_pred -----------CE--eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh---------hccccccC--CceE
Confidence 12 233344555677776 8888887764 789999998755 34444433 3446
Q ss_pred EEEcccCCcceEEEEcC------CCeEEEEeccCC
Q 022590 220 IKFSCDFHYNAAAIGNR------EGKIFVWELQSS 248 (294)
Q Consensus 220 ~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~ 248 (294)
+.|+|+|. ++++++. |+.++||+....
T Consensus 360 ~eW~PdGe--~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 360 FEWSPDGE--YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEcCCCc--EEEEEeccccEEecCCeEEEEecCc
Confidence 78999995 6666553 788999998654
No 304
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.04 E-value=9.2e-08 Score=74.00 Aligned_cols=239 Identities=12% Similarity=0.105 Sum_probs=145.9
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC----------
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE---------- 76 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---------- 76 (294)
..-++..++|| |.|. +|++.... .|.+|.......+..+. | ..|..+.|+| ++++|.+=+..+
T Consensus 31 ~~~p~~~~~~S--P~G~-~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 31 ENWPVAYVSES--PLGT-YLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cCcchhheeec--Ccch-heehhhcc-ceEEccccchhheeeee-c-CCceecccCc-ccceeeeeccCCccChhhccCC
Confidence 44577778887 9998 88887766 59999987766555554 3 5689999999 889999865444
Q ss_pred -----cEEEEEcCCCceEEEeeccCCCCCc--ee-EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590 77 -----SVRLWNVQTGICILIFAGAGGHRNE--VL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 148 (294)
Q Consensus 77 -----~i~vwd~~~~~~~~~~~~~~~~~~~--v~-~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 148 (294)
.+.+||+.+|..+..+.. ...+ .+ -+.|+- +..++|-. ....++++++.....
T Consensus 104 ~~~~n~~~vwd~~sg~iv~sf~~---~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~t~n~~-------------- 164 (561)
T COG5354 104 FTSKNNVFVWDIASGMIVFSFNG---ISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEITDNIE-------------- 164 (561)
T ss_pred ccccCceeEEeccCceeEeeccc---cCCcccccceeeeee-cchhhhhh-ccCeEEEEecCCccc--------------
Confidence 499999999999988874 3333 44 678887 55555444 345799999733110
Q ss_pred CCCceeeeceEEeecCCCceeeccee----cceEE-----EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590 149 FPTKYVQFPVFIASVHSNYVDCNRWL----GDFIL-----SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 219 (294)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~-----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (294)
..+...+. ...|....++ +..|+ ..+..+.+++|.+.... .+.........-..
T Consensus 165 ------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s---------~l~tk~lfk~~~~q 227 (561)
T COG5354 165 ------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS---------VLVTKNLFKVSGVQ 227 (561)
T ss_pred ------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC---------eeeeeeeEeecccE
Confidence 00110111 1223333333 11222 13456678888776433 22222222223335
Q ss_pred EEEcccCCcceEEEEc---------CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe--ccCCcEEE
Q 022590 220 IKFSCDFHYNAAAIGN---------REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC--CEDGAIWR 288 (294)
Q Consensus 220 ~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~v 288 (294)
+.|.+.+++..+.+-. .+..+++++++........ ...++|...+|.|.++.+++. -.+-.+.+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~ 302 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-----DLKDPVHDFTWEPLSSRFAVISGYMPASVSV 302 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-----cccccceeeeecccCCceeEEecccccceee
Confidence 7788888533222221 2356788888744321111 334789999999998877654 46777888
Q ss_pred EecCC
Q 022590 289 WDAIP 293 (294)
Q Consensus 289 w~~~~ 293 (294)
+|++.
T Consensus 303 ~~lr~ 307 (561)
T COG5354 303 FDLRG 307 (561)
T ss_pred ccccc
Confidence 87753
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.03 E-value=1.4e-09 Score=55.39 Aligned_cols=38 Identities=32% Similarity=0.675 Sum_probs=34.6
Q ss_pred ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEe
Q 022590 87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 128 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd 128 (294)
+++..+. +|.+.|++|+|+| ++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~---~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR---GHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE---SSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc---CCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 5667777 7999999999999 899999999999999997
No 306
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.96 E-value=5.6e-07 Score=69.82 Aligned_cols=235 Identities=15% Similarity=0.112 Sum_probs=143.8
Q ss_pred eeEEEEEeecCCCceEEEEeecCC---------------eEEEEEcCCccccceecccCcc--eE-EEEeCCCCCceEEE
Q 022590 10 SFYTVSWACNVDGIPFLVAGGING---------------IIRVIDVSNEKLHKSFVGHGDS--IN-EIRTQPLKPSLVVS 71 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~dg---------------~i~iw~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~l~s 71 (294)
.|+-+.|+ |.++ ||.+-+..+ .+.+||..++..+..+.....+ .. -+.|+- +..++|=
T Consensus 73 ~V~~~~fS--P~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~AR 148 (561)
T COG5354 73 DVKYLDFS--PNEK-YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVAR 148 (561)
T ss_pred CceecccC--cccc-eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhh
Confidence 46666676 8898 888876543 4999999999999988876665 44 678888 5555554
Q ss_pred eeCCCcEEEEEcCCCce-EEEeeccCCCCCceeEEEEecC-CCceEEe-----eecCCcEEEEeccccccccccceeecC
Q 022590 72 ASKDESVRLWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPS-DIYRIAS-----CGMDNTVKIWSMKEFWTYVEKSFTWTD 144 (294)
Q Consensus 72 ~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~-----~~~dg~i~~wd~~~~~~~~~~~~~~~~ 144 (294)
- ....+.|+++ ++.. ...+..+ ....|....|+|. +...|+. .+.++.+++|.+..........
T Consensus 149 v-v~~sl~i~e~-t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~----- 219 (561)
T COG5354 149 V-VGSSLYIHEI-TDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN----- 219 (561)
T ss_pred h-ccCeEEEEec-CCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-----
Confidence 3 3356889997 3332 2222211 1256888899984 2233333 3567788888887532211111
Q ss_pred CCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee-----------CCCeEEEecCCCCCCCCCCCCceeeeeee
Q 022590 145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-----------VDNEIVLWEPKMKEQSPGEGTADILQKYP 211 (294)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 211 (294)
-....-..+.|+ |+++++-. .+..+.+++++... +....
T Consensus 220 ------------------lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~----------i~V~~ 271 (561)
T COG5354 220 ------------------LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS----------IPVEK 271 (561)
T ss_pred ------------------eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc----------cceec
Confidence 001111122232 44333211 13567888887432 11111
Q ss_pred cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC---CcEEE
Q 022590 212 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED---GAIWR 288 (294)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~v 288 (294)
...++|...+|.|.++.-.+++|..+..+.++|++.+ ....+. ...=+.+-|+|.+++++.++-| |.+-+
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i 344 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEI 344 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc---eEEecC----CcccccccccCcccEEEEecCCccccceEE
Confidence 3467889999999997555666788999999999886 333332 1334567788988888887655 56778
Q ss_pred EecC
Q 022590 289 WDAI 292 (294)
Q Consensus 289 w~~~ 292 (294)
||..
T Consensus 345 ~~~~ 348 (561)
T COG5354 345 FDPA 348 (561)
T ss_pred eccC
Confidence 7754
No 307
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.1e-07 Score=71.59 Aligned_cols=80 Identities=9% Similarity=0.156 Sum_probs=69.6
Q ss_pred cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
-.|...|..++|+++..| ++..++.+..|+|.|+++...+..+..+ ..+++++|.-++.+++++|-..|.|.|||++
T Consensus 190 p~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 356678889999855555 7999999999999999999999999888 8999999999788899999999999999998
Q ss_pred CCc
Q 022590 85 TGI 87 (294)
Q Consensus 85 ~~~ 87 (294)
..+
T Consensus 267 ~~~ 269 (463)
T KOG1645|consen 267 QPE 269 (463)
T ss_pred CCC
Confidence 654
No 308
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.92 E-value=2.6e-06 Score=60.89 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=55.6
Q ss_pred CceEEEEeecCCeEEEEEcCCccccceecccCcceEE-EEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee
Q 022590 22 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE-IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 93 (294)
Q Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 93 (294)
|+ +++.|+..|.+++.+..+|.+...+..- +.|.+ -...+ ++.++..|+.|++....|.++..++.+.+
T Consensus 63 gd-fVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GD-FVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CC-EEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecc
Confidence 55 7999999999999999999888777643 33332 23344 77899999999999999999999888866
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.92 E-value=9.5e-07 Score=75.60 Aligned_cols=264 Identities=12% Similarity=0.126 Sum_probs=147.4
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCe--EEEEEcCC-ccc---ccee--cccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGI--IRVIDVSN-EKL---HKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVR 79 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~--i~iw~~~~-~~~---~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 79 (294)
.++....+|..+|.-. .++++...+. +..+.... ++. ...+ ......|.++.|.. +.+.++.+..+|.|.
T Consensus 16 ~~~~~~~~f~l~~~~~-~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~-d~~~i~v~~~~G~ii 93 (1265)
T KOG1920|consen 16 AGPGNAQAFILSPELV-TVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLA-DTNSICVITALGDII 93 (1265)
T ss_pred CCCCchhheeeccccc-eeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEec-ccceEEEEecCCcEE
Confidence 3445677788777654 5555533322 22232221 220 1111 12336899999998 777888888999999
Q ss_pred EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce-------------eecCCC
Q 022590 80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF-------------TWTDLP 146 (294)
Q Consensus 80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------------~~~~~~ 146 (294)
+-|.++......- .-...|.+++|+| ++..++..+..+++.+-. .......+..+ .|....
T Consensus 94 lvd~et~~~eivg----~vd~GI~aaswS~-Dee~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrke 167 (1265)
T KOG1920|consen 94 LVDPETLELEIVG----NVDNGISAASWSP-DEELLALITGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKE 167 (1265)
T ss_pred EEcccccceeeee----eccCceEEEeecC-CCcEEEEEeCCcEEEEEe-ccccchhccccccccccccccceecccccc
Confidence 9988776543322 2667899999999 888888888776665533 22222222222 111000
Q ss_pred CCCCCceeeeceEEeec---------CCCceeecce--ecceEEEe-----eCCCeEEEecCCCCCCCCCCCCceeeeee
Q 022590 147 SKFPTKYVQFPVFIASV---------HSNYVDCNRW--LGDFILSK-----SVDNEIVLWEPKMKEQSPGEGTADILQKY 210 (294)
Q Consensus 147 ~~~~~~~~~~~~~~~~~---------~~~~i~~~~~--~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 210 (294)
..+.....+........ -.+.=+.+.| +|+++++. ...+.|++||-. +......
T Consensus 168 Tqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s--------- 237 (1265)
T KOG1920|consen 168 TQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS--------- 237 (1265)
T ss_pred eeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc---------
Confidence 00000000000000000 1112234666 47788873 233789999987 3211100
Q ss_pred ecCCCCeeEEEEcccCCcceEEEE---cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE---eccCC
Q 022590 211 PVPECDIWFIKFSCDFHYNAAAIG---NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS---CCEDG 284 (294)
Q Consensus 211 ~~~~~~i~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s---~~~dg 284 (294)
......-.+++|-|.| ..+++- ..|+.|.+|.-+..+. -...++......++..++|+.++..||+ .....
T Consensus 238 e~~~~l~~~LsWkPsg--s~iA~iq~~~sd~~IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~ 314 (1265)
T KOG1920|consen 238 EPVEGLQHSLSWKPSG--SLIAAIQCKTSDSDIVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENS 314 (1265)
T ss_pred CcccccccceeecCCC--CeEeeeeecCCCCcEEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccc
Confidence 0011223368899987 466653 3566799998765431 2223333344456999999999999998 55555
Q ss_pred cEEEEecC
Q 022590 285 AIWRWDAI 292 (294)
Q Consensus 285 ~i~vw~~~ 292 (294)
.|++|-+.
T Consensus 315 ~v~lwt~~ 322 (1265)
T KOG1920|consen 315 LVQLWTTG 322 (1265)
T ss_pred eEEEEEec
Confidence 69999764
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=6.8e-06 Score=65.71 Aligned_cols=208 Identities=12% Similarity=-0.029 Sum_probs=113.3
Q ss_pred CeEEEEEcCCccccceecccCcceEEEEeCCCCCc-eEEEeeC---CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEe
Q 022590 33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASK---DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 108 (294)
Q Consensus 33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~ 108 (294)
..|.+-|.+... .+.+... +....-.|+| +++ .++..+. +..|.++|+.+++...... ..+......|+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~S 241 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVS 241 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEEC
Confidence 356665654333 3333333 3778899999 666 3554433 3568888998887655443 44556678899
Q ss_pred cCCC-ceEEeeecC--CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC
Q 022590 109 PSDI-YRIASCGMD--NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 183 (294)
Q Consensus 109 ~~~~-~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~ 183 (294)
| ++ .++++.+.+ ..|.++|+.... ...+..+........|+ |+.|+-.+.
T Consensus 242 P-DG~~la~~~~~~g~~~Iy~~dl~~g~------------------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 242 K-DGSKLLLTMAPKGQPDIYLYDTNTKT------------------------LTQITNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred C-CCCEEEEEEccCCCcEEEEEECCCCc------------------------EEEcccCCCccCccEECCCCCEEEEEEC
Confidence 9 55 444555544 456666766521 11111122111223454 665555443
Q ss_pred -CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC--------CeEEEEeccCCCcee
Q 022590 184 -DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE--------GKIFVWELQSSPPVL 252 (294)
Q Consensus 184 -d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~ 252 (294)
.+ .|.+.|+.+++. ..+..... ....|+|+++. ++++.... ..|.+.|+.+++..
T Consensus 297 r~g~~~Iy~~dl~~g~~----------~rlt~~g~--~~~~~SPDG~~-Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~- 362 (419)
T PRK04043 297 RLGYPNIFMKKLNSGSV----------EQVVFHGK--NNSSVSTYKNY-IVYSSRETNNEFGKNTFNLYLISTNSDYIR- 362 (419)
T ss_pred CCCCceEEEEECCCCCe----------EeCccCCC--cCceECCCCCE-EEEEEcCCCcccCCCCcEEEEEECCCCCeE-
Confidence 33 577788876542 11111111 12489999962 33333332 36888898887532
Q ss_pred eeeccccccCCCeEEEEEccCCCEEEEeccC-Cc--EEEEec
Q 022590 253 IARLSHAQSKSPIRQTAMSYDGSTILSCCED-GA--IWRWDA 291 (294)
Q Consensus 253 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~--i~vw~~ 291 (294)
.+... .......|+|||+.|+..+.+ +. +.+.++
T Consensus 363 --~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 363 --RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred --ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 23211 123358899999987765533 33 444444
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=9.1e-06 Score=60.50 Aligned_cols=225 Identities=15% Similarity=0.113 Sum_probs=132.9
Q ss_pred EEEEeecC-CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590 13 TVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 91 (294)
Q Consensus 13 ~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 91 (294)
+..|. + ++. ++++-...+.|..|+..+++... +.... ...+++...++. |+.+...+ +.++|..+++....
T Consensus 4 gp~~d--~~~g~-l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWD--PRDGR-LYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEE--TTTTE-EEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEE--CCCCE-EEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE
Confidence 45676 6 565 77777788999999988775432 32222 677777732554 45555544 55669988866554
Q ss_pred eecc-CC-CCCceeEEEEecCCCceEEeeecC--------CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590 92 FAGA-GG-HRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161 (294)
Q Consensus 92 ~~~~-~~-~~~~v~~l~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (294)
.... .. .....+.+++.| ++++.++.... |.+..++... . ....
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-----------------------~--~~~~ 129 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDG-----------------------K--VTVV 129 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTS-----------------------E--EEEE
T ss_pred eeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCC-----------------------e--EEEE
Confidence 4431 12 345789999999 78866665533 4455555552 1 1112
Q ss_pred ecCCCceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590 162 SVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 238 (294)
Q Consensus 162 ~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 238 (294)
...-...+.++|+ ++.| ++-+..+.|..|++....... .....+............+++..++ ++.++....+
T Consensus 130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~g~pDG~~vD~~G--~l~va~~~~~ 205 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL--SNRRVFIDFPGGPGYPDGLAVDSDG--NLWVADWGGG 205 (246)
T ss_dssp EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE--EEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTT
T ss_pred ecCcccccceEECCcchheeecccccceeEEEeccccccce--eeeeeEEEcCCCCcCCCcceEcCCC--CEEEEEcCCC
Confidence 2223445677786 5555 466778889999986433100 0011222222222347789999988 5677777789
Q ss_pred eEEEEeccCCCceeeeeccccccCCCeEEEEEc-cCCCEEEEe
Q 022590 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILSC 280 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~ 280 (294)
.|.+++.+ ++......+. ...+++++|. ++.+.|+..
T Consensus 206 ~I~~~~p~-G~~~~~i~~p----~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 206 RIVVFDPD-GKLLREIELP----VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEETT-SCEEEEEE-S----SSSEEEEEEESTTSSEEEEE
T ss_pred EEEEECCC-ccEEEEEcCC----CCCEEEEEEECCCCCEEEEE
Confidence 99999988 5533333332 2368999994 665655543
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=2.3e-06 Score=63.40 Aligned_cols=199 Identities=15% Similarity=0.076 Sum_probs=112.3
Q ss_pred CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEe-eccCCCC
Q 022590 21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF-AGAGGHR 99 (294)
Q Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~ 99 (294)
++. .+++++.++.|..||..+|+.+.++.. ..++...... .+..++.++.++.+..+|..+|+.+... .....-.
T Consensus 35 ~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGG-RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETT-EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cccccccccceeeeEecccCCcceeeeecccccccc
Confidence 455 677778999999999999998877764 2222111121 3345666778889999999999998884 3210011
Q ss_pred CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEE
Q 022590 100 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFIL 179 (294)
Q Consensus 100 ~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 179 (294)
.......... .+..++.+..++.|..+|++++............. ..... ........+.+.+..++
T Consensus 111 ~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 111 GVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG---------SSPIS---SFSDINGSPVISDGRVY 177 (238)
T ss_dssp STB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S---------S--EE---EETTEEEEEECCTTEEE
T ss_pred ccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC---------Cccee---eecccccceEEECCEEE
Confidence 1122233333 35667888889999999999854322221100000 00000 00000112222334666
Q ss_pred EeeCCCe-EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce
Q 022590 180 SKSVDNE-IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 251 (294)
Q Consensus 180 ~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 251 (294)
.+..++. +.+ |+.+++. +-... ......+ ....+ ..++.++.++.+..||+++++..
T Consensus 178 ~~~~~g~~~~~-d~~tg~~---------~w~~~--~~~~~~~-~~~~~--~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 178 VSSGDGRVVAV-DLATGEK---------LWSKP--ISGIYSL-PSVDG--GTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EECCTSSEEEE-ETTTTEE---------EEEEC--SS-ECEC-EECCC--TEEEEEETTTEEEEEETTTTEEE
T ss_pred EEcCCCeEEEE-ECCCCCE---------EEEec--CCCccCC-ceeeC--CEEEEEeCCCEEEEEECCCCCEE
Confidence 6677775 555 9887752 22222 2222221 23344 46777779999999999998643
No 313
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=3.7e-06 Score=67.21 Aligned_cols=113 Identities=11% Similarity=0.037 Sum_probs=67.9
Q ss_pred eeEEEEEeecCCCceEEEEeec---CCeEEEEEcCCccccceecccCcceEEEEeCCCCCc-eEEEeeCC--CcEEEEEc
Q 022590 10 SFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKD--ESVRLWNV 83 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~d--g~i~vwd~ 83 (294)
.+..-.|+ |||+..++..+. +..|.++|+.+++...... ..+......|+| +++ ++++.+.+ ..|.++|+
T Consensus 189 ~~~~p~wS--pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWA--NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEEC--CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEEC
Confidence 44566776 899732444333 3579999998876544333 455667788999 665 44455444 45777788
Q ss_pred CCCceEEEeeccCCCCCceeEEEEecCCCceE-EeeecCC--cEEEEeccc
Q 022590 84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDN--TVKIWSMKE 131 (294)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg--~i~~wd~~~ 131 (294)
.+++... +.. +........|+| +++.| ++....+ .|.+.|+..
T Consensus 265 ~~g~~~~-LT~---~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 265 NTKTLTQ-ITN---YPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred CCCcEEE-ccc---CCCccCccEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 7776433 331 333334567999 66544 4444444 466666655
No 314
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.88 E-value=7.1e-06 Score=64.61 Aligned_cols=243 Identities=11% Similarity=0.022 Sum_probs=129.2
Q ss_pred eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc-------------------------------------------c
Q 022590 10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-------------------------------------------H 46 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------------------~ 46 (294)
.|..+.|+ ++.. -|++|...|.|.||.....+. .
T Consensus 3 ~v~~vs~a--~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~ 79 (395)
T PF08596_consen 3 SVTHVSFA--PETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL 79 (395)
T ss_dssp -EEEEEEE--TTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred eEEEEEec--CCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence 57788887 6554 699999999999997532210 0
Q ss_pred ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC-----CCCCceeEEEEec----CCC---ce
Q 022590 47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-----GHRNEVLSVDFHP----SDI---YR 114 (294)
Q Consensus 47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~v~~l~~~~----~~~---~~ 114 (294)
..++...++|++++.+. -.+++.|..+|.+.|.|++....+..-.... .....|+++.|.. +++ -.
T Consensus 80 ~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred hheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 11223467899999974 5699999999999999998777766532211 2345688898863 122 56
Q ss_pred EEeeecCCcEEEEeccc-cccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce-e------------------
Q 022590 115 IASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-L------------------ 174 (294)
Q Consensus 115 l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~------------------ 174 (294)
+++|...|.+.+|.+.- ......-.+. .....+.++|..+.. +
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~-----------------~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~ 220 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFA-----------------GATTNHDSPILSIIPINADTGESALATISAMQGLS 220 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEE-----------------EEE--SS----EEEEEETTT--B-B-BHHHHHGGG
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEe-----------------eccccCCCceEEEEEEECCCCCcccCchhHhhccc
Confidence 88899999999998863 1111111110 000112222221110 0
Q ss_pred ----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc---cCCcceEEEEcCCCeEEEEeccC
Q 022590 175 ----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC---DFHYNAAAIGNREGKIFVWELQS 247 (294)
Q Consensus 175 ----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~~~dg~i~i~d~~~ 247 (294)
-+-++....+..++++...+.+. ..+..........+.+.+ ......|++-..+|.+++|.+..
T Consensus 221 ~g~~i~g~vVvvSe~~irv~~~~~~k~---------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 221 KGISIPGYVVVVSESDIRVFKPPKSKG---------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp GT----EEEEEE-SSEEEEE-TT---E---------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred cCCCcCcEEEEEcccceEEEeCCCCcc---------cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 11244445578899999876542 222221112222334432 11225788889999999999998
Q ss_pred CCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590 248 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 283 (294)
Q Consensus 248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 283 (294)
-+.+....+....+...+....++++|..++-.+..
T Consensus 292 Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 292 LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred chHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence 876655555432233345667789999887766543
No 315
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.86 E-value=2.1e-06 Score=62.76 Aligned_cols=220 Identities=9% Similarity=0.052 Sum_probs=117.5
Q ss_pred eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEE
Q 022590 48 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 127 (294)
Q Consensus 48 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~w 127 (294)
.+.+-...++.|+|.|+++.++++....+.|..++. +|+.+..+... -.+..-.|++.. ++.++++.-.++.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~--g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD--GFGDYEGITYLG-NGRYVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S--S-SSEEEEEE-S-TTEEEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC--CCCCceeEEEEC-CCEEEEEEcCCCcEEEE
Confidence 445555679999999956677888888888888886 58888877631 235678899985 66766666668999999
Q ss_pred eccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCce
Q 022590 128 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD 205 (294)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 205 (294)
++.......... ............+...+-.++|+ ++.|+++-...-..+|.++...... ...
T Consensus 92 ~~~~~~~~~~~~------------~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~---~~~ 156 (248)
T PF06977_consen 92 TIDDDTTSLDRA------------DVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF---DLF 156 (248)
T ss_dssp EE----TT--EE------------EEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-----E
T ss_pred EEeccccccchh------------hceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc---cee
Confidence 986522111100 00011111122355668899998 5667777776666777665411000 000
Q ss_pred ee-----eeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccccc-----CCCeEEEEEccCCC
Q 022590 206 IL-----QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS-----KSPIRQTAMSYDGS 275 (294)
Q Consensus 206 ~~-----~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~ 275 (294)
.. .........+.++.+.|... .+++.+.....|..+| .+++.+....+....| -...-.|+|.++|+
T Consensus 157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 157 VSDDQDLDDDKLFVRDLSGLSYDPRTG-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp EEE-HHHH-HT--SS---EEEEETTTT-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred eccccccccccceeccccceEEcCCCC-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 00 00112234577889998865 6777788899999999 5555545555542211 24578999999996
Q ss_pred EEEEeccCCcEEEE
Q 022590 276 TILSCCEDGAIWRW 289 (294)
Q Consensus 276 ~l~s~~~dg~i~vw 289 (294)
+.+++ +-+..+++
T Consensus 235 LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 235 LYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEEE-TTTEEEEE
T ss_pred EEEEc-CCceEEEe
Confidence 55554 56655554
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.85 E-value=8.6e-07 Score=70.33 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=69.4
Q ss_pred EEEEcCCccccc----eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC
Q 022590 36 RVIDVSNEKLHK----SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 111 (294)
Q Consensus 36 ~iw~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 111 (294)
.+|+...++..+ ++ .....|.+++++| +...|+.|+.||+|.+||...+..... + ..-.++.++|+| +
T Consensus 239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp-~ 310 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHP-D 310 (545)
T ss_pred EEEEeecCceeEEEEEEE-ecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcC-C
Confidence 456665443221 12 3678899999999 888999999999999999976644332 3 556789999999 9
Q ss_pred CceEEeeecCCcEEEEeccc
Q 022590 112 IYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 112 ~~~l~~~~~dg~i~~wd~~~ 131 (294)
+.++++|+.-|.+.+||+.-
T Consensus 311 gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 311 GAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CcEEEEEcCCceEEEEEeec
Confidence 99999999999999999986
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=4.6e-06 Score=69.11 Aligned_cols=197 Identities=13% Similarity=0.160 Sum_probs=128.3
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecccCcc-eEEEEeCCCCCceEEEeeCCCc-----EEEEEcCCC------c
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS-INEIRTQPLKPSLVVSASKDES-----VRLWNVQTG------I 87 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~------~ 87 (294)
+.+. .++.|+.+|.|.+++ ..-+.++.++.+... |..+.... +..+|++.+.|+. ++||+++.- .
T Consensus 33 s~~~-~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 33 SSTG-SVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred CCCc-eEEEeeccccEEEec-ccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 5565 899999999998887 344555778888777 55554443 5578888877654 899998642 2
Q ss_pred eE---EEeeccCC-CCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590 88 CI---LIFAGAGG-HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 163 (294)
Q Consensus 88 ~~---~~~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
++ +.+....+ ...++.+++.+. +-..+|+|-.||.|..+.-.-.+.. .........
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDr-------------------gsr~~~~~~ 169 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDR-------------------GSRQDYSHR 169 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhcc-------------------ccceeeecc
Confidence 33 22221111 356789999998 7788999999999998864431110 112223334
Q ss_pred CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
-..+|+.+.+. +..++-......|.+|.+.... ........+..++.+..+++... -+++++ +..+.
T Consensus 170 ~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~--qfIca~-~e~l~ 238 (933)
T KOG2114|consen 170 GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTY--QFICAG-SEFLY 238 (933)
T ss_pred CCCCceeeEEecCCceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCc--cEEEec-CceEE
Confidence 56789999885 4442333344678999988322 24555777788888888888763 244443 35699
Q ss_pred EEeccCCCc
Q 022590 242 VWELQSSPP 250 (294)
Q Consensus 242 i~d~~~~~~ 250 (294)
+|+....++
T Consensus 239 fY~sd~~~~ 247 (933)
T KOG2114|consen 239 FYDSDGRGP 247 (933)
T ss_pred EEcCCCcce
Confidence 999886553
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=4.7e-09 Score=86.49 Aligned_cols=197 Identities=13% Similarity=0.160 Sum_probs=125.2
Q ss_pred cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-
Q 022590 44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN- 122 (294)
Q Consensus 44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg- 122 (294)
+..+++..|....+|++|+- +.++|+.|+..|.|+++++.+|....... +|..+|+.+.-+. ++..+++.+.-.
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~n---cH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVN---CHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccccccc---ccccccccccccC-CcceeeeeccccC
Confidence 34566778889999999999 88999999999999999999999888777 7999999999998 666665554333
Q ss_pred -cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCC
Q 022590 123 -TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP 199 (294)
Q Consensus 123 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~ 199 (294)
...+|++..- ..+...+ ..-.++.|+ -..-+.|+......+||+++.....
T Consensus 1167 PlsaLW~~~s~----------------------~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1167 PLSALWDASST----------------------GGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred chHHHhccccc----------------------cCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHH
Confidence 4688998761 1111111 122345554 2223344445678999999876311
Q ss_pred CCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590 200 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS 279 (294)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 279 (294)
. .+.........-+...|+|+.. +++ .|| .+||++..+. +.++.. . ..-..-.|+|.|.-++.
T Consensus 1221 t-----ylt~~~~~~y~~n~a~FsP~D~--LIl---ndG--vLWDvR~~~a--Ih~FD~--f-t~~~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1221 T-----YLTDTVTSSYSNNLAHFSPCDT--LIL---NDG--VLWDVRIPEA--IHRFDQ--F-TDYGGGGFHPSGNEVII 1283 (1516)
T ss_pred H-----hcCcchhhhhhccccccCCCcc--eEe---eCc--eeeeeccHHH--Hhhhhh--h-eecccccccCCCceEEe
Confidence 1 1111111122235678999884 443 345 4799988642 233221 0 11223458888887776
Q ss_pred eccCCcEEEEecCC
Q 022590 280 CCEDGAIWRWDAIP 293 (294)
Q Consensus 280 ~~~dg~i~vw~~~~ 293 (294)
-++ |||+++
T Consensus 1284 NSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1284 NSE-----IWDMRT 1292 (1516)
T ss_pred ech-----hhhhHH
Confidence 653 666653
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.80 E-value=7.6e-06 Score=70.38 Aligned_cols=243 Identities=14% Similarity=0.187 Sum_probs=142.7
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC--
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-- 84 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-- 84 (294)
.++.|.++.|- .+.. -++.+...|.|.+-|.++.... ....-...|.+++|+| +.+.++..+..+++.+-.-.
T Consensus 67 gd~~i~s~~fl--~d~~-~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 67 GDDEIVSVQFL--ADTN-SICVITALGDIILVDPETLELE-IVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred CCcceEEEEEe--cccc-eEEEEecCCcEEEEccccccee-eeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEecccc
Confidence 34578888776 6666 7888888999999988776532 2333467899999999 88999888888887665321
Q ss_pred --CCceE-------------------EEeeccCC------------------CCCceeEEEEecCCCceEEeee----cC
Q 022590 85 --TGICI-------------------LIFAGAGG------------------HRNEVLSVDFHPSDIYRIASCG----MD 121 (294)
Q Consensus 85 --~~~~~-------------------~~~~~~~~------------------~~~~v~~l~~~~~~~~~l~~~~----~d 121 (294)
..+.+ ..|.+..+ ..+.=+.|.|-- ++.++++.. .+
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETG 220 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCC
Confidence 11111 11221000 111124588886 888888842 23
Q ss_pred -CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEe---eCCCeEEEecCCCC
Q 022590 122 -NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK---SVDNEIVLWEPKMK 195 (294)
Q Consensus 122 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~---~~d~~i~iwd~~~~ 195 (294)
..|++||-...-... ..+ ...--.+++|- |..+++- +.|+.|.+|..+..
T Consensus 221 ~RkirV~drEg~Lns~------------------se~------~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 221 TRKIRVYDREGALNST------------------SEP------VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ceeEEEecccchhhcc------------------cCc------ccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence 789999987311000 000 11111234442 6666654 34567999987654
Q ss_pred CCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE---EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590 196 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI---GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 272 (294)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 272 (294)
. +......++.....+..++|+.++ ..|++ ......|++|-+.+...-....+.... ... +.|+|
T Consensus 277 ~------hg~f~l~~p~de~~ve~L~Wns~s--diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~--~~~--~~W~p 344 (1265)
T KOG1920|consen 277 R------HGEFVLPFPLDEKEVEELAWNSNS--DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ--KAL--LMWDP 344 (1265)
T ss_pred c------ccccccCCcccccchheeeecCCC--CceeeeecccccceEEEEEecCeEEEEEEEEeccc--ccc--ccccC
Confidence 3 222233334444558899999998 46666 444555999999887654444444221 111 77887
Q ss_pred CC-CEEEEeccCCcEEEEec
Q 022590 273 DG-STILSCCEDGAIWRWDA 291 (294)
Q Consensus 273 ~~-~~l~s~~~dg~i~vw~~ 291 (294)
.. ..|..-..+|...++++
T Consensus 345 ~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 345 VTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CCceeEEEEecCCcEEEEEE
Confidence 43 23333336666655554
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.78 E-value=1.8e-05 Score=63.37 Aligned_cols=230 Identities=7% Similarity=0.002 Sum_probs=128.4
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC--Cce
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR--NEV 102 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~v 102 (294)
.++.++.+|.+..+|.++|+.+.+.+.......+-... +..++.+..++.+.-+|..+|+.+..+....... ...
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 57778889999999999999887766433211111222 2456667888999999999999887775310000 000
Q ss_pred eEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe-ecCCCceeecceecceEEEe
Q 022590 103 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWLGDFILSK 181 (294)
Q Consensus 103 ~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~ 181 (294)
.+-... ++ .++.++.+|.+..+|..++....+........ . .....+ .....++ ..++.++.+
T Consensus 199 ~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~--~-------~~~~~~~~~~~sP~----v~~~~vy~~ 262 (394)
T PRK11138 199 SAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG--A-------TEIDRLVDVDTTPV----VVGGVVYAL 262 (394)
T ss_pred CCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCC--c-------cchhcccccCCCcE----EECCEEEEE
Confidence 011111 22 46667778999999988754332211100000 0 000000 0001111 226677777
Q ss_pred eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccccc
Q 022590 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS 261 (294)
Q Consensus 182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 261 (294)
+.+|.+..+|..+++... +.+.. ....+. ..+ ..++.++.+|.+..+|..+++........ ..
T Consensus 263 ~~~g~l~ald~~tG~~~W---------~~~~~--~~~~~~--~~~--~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~ 325 (394)
T PRK11138 263 AYNGNLVALDLRSGQIVW---------KREYG--SVNDFA--VDG--GRIYLVDQNDRVYALDTRGGVELWSQSDL--LH 325 (394)
T ss_pred EcCCeEEEEECCCCCEEE---------eecCC--CccCcE--EEC--CEEEEEcCCCeEEEEECCCCcEEEccccc--CC
Confidence 889999999999876321 11111 111111 123 36777888999999999988644322211 10
Q ss_pred CCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
....+... .+.+|+.++.||.|++.|.++
T Consensus 326 -~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 326 -RLLTAPVL--YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred -CcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 11111122 245677888899888887653
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=2.5e-05 Score=58.28 Aligned_cols=242 Identities=14% Similarity=0.061 Sum_probs=128.6
Q ss_pred EEEEeecCCCceEEEEeecCCe-EEEEEcCCccccceecccCcceE--EEEeCCCCCceEEEee-----CCCcEEEEEcC
Q 022590 13 TVSWACNVDGIPFLVAGGINGI-IRVIDVSNEKLHKSFVGHGDSIN--EIRTQPLKPSLVVSAS-----KDESVRLWNVQ 84 (294)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~l~s~~-----~dg~i~vwd~~ 84 (294)
.++.. |.....++.+-.-|+ ..+||..+++....+....+.-. .-.|++ ++++|++.- ..|.|-|||..
T Consensus 9 ~~a~~--p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 9 GVAAH--PTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ceeeC--CCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 34444 644336777776665 67899999988776654333322 267999 888888864 35889999998
Q ss_pred -CCceEEEeeccCCCCCceeEEEEecCCCceEEeeec-------CCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590 85 -TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 156 (294)
Q Consensus 85 -~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
+-+.+..+. .|.-....+.+.| ++..|+++-- .|.-++ ++.++.. ++.+-..... . ..
T Consensus 86 ~~~~ri~E~~---s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kL-Nl~tM~p----sL~~ld~~sG---~--ll 151 (305)
T PF07433_consen 86 RGYRRIGEFP---SHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKL-NLDTMQP----SLVYLDARSG---A--LL 151 (305)
T ss_pred CCcEEEeEec---CCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceec-ChhhcCC----ceEEEecCCC---c--ee
Confidence 556666776 4666677888999 7765665521 122222 2222111 1110000000 0 00
Q ss_pred ceEEe--ecCCCceeecceecc-eEEEee-CCC-------eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEccc
Q 022590 157 PVFIA--SVHSNYVDCNRWLGD-FILSKS-VDN-------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 225 (294)
Q Consensus 157 ~~~~~--~~~~~~i~~~~~~~~-~l~~~~-~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 225 (294)
....+ ..|...|.-++++++ .++.+. ..| -+-+++....-.. ..... .....-..-+-+++++.+
T Consensus 152 ~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~-~~~p~---~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 152 EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRL-LPAPE---EQWRRLNGYIGSIAADRD 227 (305)
T ss_pred eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCccee-ccCCh---HHHHhhCCceEEEEEeCC
Confidence 01112 335666776666522 222222 111 1222222211000 00000 001111345778999999
Q ss_pred CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590 226 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 283 (294)
Q Consensus 226 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 283 (294)
+. .+.+++-..|.+.+||..+++.+....+. .+..++-.+++ ++++.+.-
T Consensus 228 g~-~ia~tsPrGg~~~~~d~~tg~~~~~~~l~------D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 228 GR-LIAVTSPRGGRVAVWDAATGRLLGSVPLP------DACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CC-EEEEECCCCCEEEEEECCCCCEeeccccC------ceeeeeecCCc-eEEeCCCc
Confidence 84 34466667889999999998744333332 36677777776 66665443
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.78 E-value=4.5e-05 Score=60.98 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=58.9
Q ss_pred CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
...+.+++++|+. ..++.|+.||.|.+||...+..... ...-..+.++|+|+|.++++|+..|.+.+||+.
T Consensus 259 ~s~v~~ca~sp~E--~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSE--DKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCccc--ceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 4578899999998 5899999999999999987632211 122457889999999999999999999999985
No 323
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=2.7e-05 Score=58.02 Aligned_cols=179 Identities=16% Similarity=0.134 Sum_probs=106.9
Q ss_pred EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-----cCcceEEEEeCCCCCceEEEeeCC--------CcE
Q 022590 12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKD--------ESV 78 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~d--------g~i 78 (294)
..+++. .++|. ++.+...+ +.++|..+++....... .....+.+++.| ++++.++.... |.|
T Consensus 43 ~G~~~~-~~~g~--l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 43 NGMAFD-RPDGR--LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEE-CTTSE--EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEE
T ss_pred ceEEEE-ccCCE--EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccce
Confidence 344443 15654 55555554 55669888755433332 345789999999 88877766543 456
Q ss_pred EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCc-eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590 79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
..++.. ++...... .-...+.|+|+| +++ ++++-+..+.|..+++......... ...
T Consensus 118 ~~~~~~-~~~~~~~~----~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------------~~~ 175 (246)
T PF08450_consen 118 YRIDPD-GKVTVVAD----GLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSN----------------RRV 175 (246)
T ss_dssp EEEETT-SEEEEEEE----EESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEE----------------EEE
T ss_pred EEECCC-CeEEEEec----CcccccceEECC-cchheeecccccceeEEEeccccccceee----------------eee
Confidence 666665 45444333 344578999999 665 4456677888999998752210000 111
Q ss_pred eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc-ccCC
Q 022590 158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFH 227 (294)
Q Consensus 158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 227 (294)
........+....++++ |++.++....+.|.++|.+ ++ .+..+..+...+++++|. ++.+
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~---------~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK---------LLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC---------EEEEEE-SSSSEEEEEEESTTSS
T ss_pred EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc---------EEEEEcCCCCCEEEEEEECCCCC
Confidence 11222222345667775 7777777788999999987 43 566666666689999994 4543
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3e-06 Score=70.13 Aligned_cols=207 Identities=11% Similarity=0.090 Sum_probs=123.4
Q ss_pred ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCc-eeEEEEecCCCceEEeeecCCc-----EEEEe
Q 022590 55 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE-VLSVDFHPSDIYRIASCGMDNT-----VKIWS 128 (294)
Q Consensus 55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~~~~~dg~-----i~~wd 128 (294)
.++| |++ ++..++.|+.+|.|.+.+- +-+.+..++ .+... |..+.... +.++|++.+.|+. +++|+
T Consensus 27 ~isc--~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fq---a~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 27 AISC--CSS-STGSVVIGTADGRVVILNS-SFQLIRGFQ---AYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred ceeE--EcC-CCceEEEeeccccEEEecc-cceeeehhe---ecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEec
Confidence 4444 456 6788999999999988764 333445555 46555 44444443 5577888777654 89999
Q ss_pred ccccccccccceeecCCCCCCCCceeeeceEE--eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCc
Q 022590 129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI--ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA 204 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 204 (294)
+......... .-.....+.. ....+.++.+++.+ -..+++|-.+|.|..+.=.-... ..
T Consensus 99 lek~~~n~sP------------~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-----rg 161 (933)
T KOG2114|consen 99 LEKVDKNNSP------------QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-----RG 161 (933)
T ss_pred ccccCCCCCc------------ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-----cc
Confidence 9873211100 0000001111 11124455666665 56788999999998885332111 00
Q ss_pred eeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590 205 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284 (294)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 284 (294)
....-......+|+.+.+..+++.. +.+. .-..|.+|.+.... .....+. .|+.+++|..+++....+++++..
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~-lFv~-Tt~~V~~y~l~gr~-p~~~~ld--~~G~~lnCss~~~~t~qfIca~~e- 235 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSV-LFVA-TTEQVMLYSLSGRT-PSLKVLD--NNGISLNCSSFSDGTYQFICAGSE- 235 (933)
T ss_pred cceeeeccCCCCceeeEEecCCcee-EEEE-ecceeEEEEecCCC-cceeeec--cCCccceeeecCCCCccEEEecCc-
Confidence 1122222345789999999999632 3333 34569999998543 2233344 677889999999876656666544
Q ss_pred cEEEEecC
Q 022590 285 AIWRWDAI 292 (294)
Q Consensus 285 ~i~vw~~~ 292 (294)
.+.+|+..
T Consensus 236 ~l~fY~sd 243 (933)
T KOG2114|consen 236 FLYFYDSD 243 (933)
T ss_pred eEEEEcCC
Confidence 48888764
No 325
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.71 E-value=1.1e-05 Score=64.46 Aligned_cols=230 Identities=11% Similarity=-0.014 Sum_probs=126.0
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCc----------ce-EEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGD----------SI-NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 93 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~----------~v-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 93 (294)
.+++++.+|.+.-+|.++|+.+........ .+ ..+.. .+..++.++.+|.+.-+|.++|+.+....
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 678888899999999999987765543210 00 01112 23467778889999999999999887765
Q ss_pred ccCCCCCceeE-EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecc
Q 022590 94 GAGGHRNEVLS-VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 172 (294)
Q Consensus 94 ~~~~~~~~v~~-l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 172 (294)
. ...+.+ .... + ..++.+..++.+..+|..+++......... +.........++
T Consensus 148 ~----~~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--------------~~~~~~~~~sP~---- 202 (394)
T PRK11138 148 V----AGEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDV--------------PSLTLRGESAPA---- 202 (394)
T ss_pred C----CCceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCC--------------CcccccCCCCCE----
Confidence 2 222221 1221 3 346667778999999998855432221110 000000111111
Q ss_pred eecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCcee
Q 022590 173 WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 252 (294)
Q Consensus 173 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 252 (294)
..++.++.++.++.+..+|..+++............... ......+..+|--....++.++.+|.+..+|..+++...
T Consensus 203 v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~--~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W 280 (394)
T PRK11138 203 TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE--IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW 280 (394)
T ss_pred EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc--hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE
Confidence 124456777888999999988876432111000000000 000000111121001356777789999999999987554
Q ss_pred eeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 253 IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 253 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
..... . ...+. ..+..|+.++.+|.+..+|.+
T Consensus 281 ~~~~~--~----~~~~~--~~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 281 KREYG--S----VNDFA--VDGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred eecCC--C----ccCcE--EECCEEEEEcCCCeEEEEECC
Confidence 44322 1 11122 234566667777777777664
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=3.6e-06 Score=69.15 Aligned_cols=119 Identities=13% Similarity=0.184 Sum_probs=89.1
Q ss_pred ccccCceeEEEEEeec-----------CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC----CCce
Q 022590 4 VDQKEESFYTVSWACN-----------VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL----KPSL 68 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~-----------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~ 68 (294)
+..|.+.|+...+... .+|. ++++++.||.|.|-.+.+.+...++. ...++.+++++|+ ..+.
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Ge-y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~ 131 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGE-YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQ 131 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCc-eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhh
Confidence 4477888887777643 2588 99999999999999998888777666 5589999999994 2568
Q ss_pred EEEeeCCCcEEEEEcC---CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccc
Q 022590 69 VVSASKDESVRLWNVQ---TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133 (294)
Q Consensus 69 l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 133 (294)
+++|+.-| +.++.-. ....+ .+. .-.++|.++.|. ++++|=+..+| |++||+....
T Consensus 132 fv~GG~ag-lvL~er~wlgnk~~v-~l~---~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 132 FVSGGMAG-LVLSERNWLGNKDSV-VLS---EGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred eeecCcce-EEEehhhhhcCccce-eee---cCccceEEEEec---CcEEEEecCCC-cEEEeccccc
Confidence 99999988 7666432 11222 233 467899999995 57787777665 9999998743
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.69 E-value=1.1e-08 Score=81.36 Aligned_cols=208 Identities=13% Similarity=0.156 Sum_probs=127.6
Q ss_pred CcceEEEEeCCCCC-ceEEEeeCCCcEEEEEcCCCceE-EEeeccCCCCCceeEEEEecCCCceEEeee----cCCcEEE
Q 022590 53 GDSINEIRTQPLKP-SLVVSASKDESVRLWNVQTGICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCG----MDNTVKI 126 (294)
Q Consensus 53 ~~~v~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~----~dg~i~~ 126 (294)
...+.|+++.-... .+++.|..+|.|.+-.++...-- ..+.. ++..+.++++|++-+.+.||+|- .|..+.+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp--~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTP--GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecc--cccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 44678888766333 57888999999999888654322 22222 68889999999997778788773 4678999
Q ss_pred EeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCc
Q 022590 127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA 204 (294)
Q Consensus 127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 204 (294)
||+.+.-..... .+.... .......+++|. ..++.+|...+.+.++|+|....
T Consensus 134 wdi~s~ltvPke-----------------~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~------- 188 (783)
T KOG1008|consen 134 WDINSLLTVPKE-----------------SPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD------- 188 (783)
T ss_pred eecccccCCCcc-----------------cccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhh-------
Confidence 999984211100 011111 122333466775 66788888888999999984321
Q ss_pred eeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe-ccCCCceeeeecc-ccccCCCeEEEEEccCCC-EEEEec
Q 022590 205 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE-LQSSPPVLIARLS-HAQSKSPIRQTAMSYDGS-TILSCC 281 (294)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~-~l~s~~ 281 (294)
.........+..+...|-.. +++++-. ||.|.+|| ..+-+........ .......+..++|+|... .+++..
T Consensus 189 ---~~~svnTk~vqG~tVdp~~~-nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~ 263 (783)
T KOG1008|consen 189 ---SVSSVNTKYVQGITVDPFSP-NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS 263 (783)
T ss_pred ---hhhhhhhhhcccceecCCCC-Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence 11111122345567777332 4666555 99999999 4443322221111 111123589999999643 455555
Q ss_pred c-CCcEEEEecC
Q 022590 282 E-DGAIWRWDAI 292 (294)
Q Consensus 282 ~-dg~i~vw~~~ 292 (294)
. .++|+.+|+.
T Consensus 264 RdS~tIrlydi~ 275 (783)
T KOG1008|consen 264 RDSITIRLYDIC 275 (783)
T ss_pred cCcceEEEeccc
Confidence 4 4678998875
No 328
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.69 E-value=6.2e-06 Score=51.27 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=74.4
Q ss_pred eEEEEEe-ecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590 11 FYTVSWA-CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 89 (294)
Q Consensus 11 v~~~~~~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 89 (294)
|++++++ +..+|.+.|++|+.|..|++|+- ...+..+. -.+.|+++.-.. . ..++.+-.+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~-~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLG-G-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcC-C-CEEEEEecCCEEEEEeC--ccee
Confidence 6777766 34566679999999999999984 45566666 346788888776 3 67999999999999985 3334
Q ss_pred EEeeccCCCCCceeEEEEecCC---CceEEeeecCCcEE
Q 022590 90 LIFAGAGGHRNEVLSVDFHPSD---IYRIASCGMDNTVK 125 (294)
Q Consensus 90 ~~~~~~~~~~~~v~~l~~~~~~---~~~l~~~~~dg~i~ 125 (294)
...+ .+..+.++.+..-+ ...|++|-.+|.|-
T Consensus 75 WRiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4444 34457777765422 24688998888774
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=2.7e-08 Score=82.20 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=88.4
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEe-eCCC-cEEEE
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-SKDE-SVRLW 81 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg-~i~vw 81 (294)
+.+|....+|++|+ .+.+ +|+.|+..|.|+++++.+|........|..+|+-+.=+. ++..+.+. +... -..+|
T Consensus 1097 frd~~~~fTc~afs--~~~~-hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFS--GGTN-HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEee--cCCc-eEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHh
Confidence 45788999999998 5555 999999999999999999999999999999999999888 55554443 3333 56799
Q ss_pred EcCC-CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccc
Q 022590 82 NVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 132 (294)
Q Consensus 82 d~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~ 132 (294)
++.+ +...+.|. .-.++.|+. ....-+.|..-....+||+.+.
T Consensus 1173 ~~~s~~~~~Hsf~-------ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD-------EDKAVKFSN-SLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred ccccccCcccccc-------ccceeehhh-hHHHHHhcccccceEEEecccC
Confidence 9864 33444443 346788986 4444455555567899999984
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=8.4e-07 Score=73.42 Aligned_cols=108 Identities=9% Similarity=0.167 Sum_probs=84.5
Q ss_pred EEEeecCCCceEEEEeec----CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590 14 VSWACNVDGIPFLVAGGI----NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 89 (294)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 89 (294)
.+|. |... ++|+++. .|.|.||- ++|++.+... ..-.+++++|+| ..-.|+.|-.-|.+.+|...+.+.-
T Consensus 21 ~SWH--PseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 21 SSWH--PSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccC--CCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCceee
Confidence 4565 6665 8888764 58899985 6777544332 223457799999 7778999999999999998776655
Q ss_pred EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 90 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 90 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
.... .|..+|..+.|+| +|..++++..-|.+.+|....
T Consensus 95 tv~~---th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 95 TVVE---THPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eecc---CCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 4444 5999999999999 899999999999999998874
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.54 E-value=6.4e-07 Score=72.30 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=86.9
Q ss_pred ceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590 167 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 246 (294)
Q Consensus 167 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 246 (294)
..+|++-.+++++.|+.-|.+++|+-..++.. .....+....+..+..+++. .++|+|+..|.|.++-++
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--------~~~~~~~~~~~~~~~vs~~e--~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--------KLKNEGATGITCVRSVSSVE--YLVAAGTASGRVSVFQLN 106 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhh--------cccccCccceEEEEEecchh--HhhhhhcCCceEEeehhh
Confidence 34555556999999999999999998776531 22222244556667777777 588999999999999998
Q ss_pred CCCceeeeecc--ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 247 SSPPVLIARLS--HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 247 ~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
...+....... +..|...|++++|++++..|++|...|.|..-.+.
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 86544333333 33468899999999999999999999998776554
No 332
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.53 E-value=0.00022 Score=55.46 Aligned_cols=221 Identities=12% Similarity=0.140 Sum_probs=125.5
Q ss_pred CeEEEEEcCCccccceeccc-CcceEEE---EeCCC---CCceEEEeeC----------CCcEEEEEcCCC----ceEEE
Q 022590 33 GIIRVIDVSNEKLHKSFVGH-GDSINEI---RTQPL---KPSLVVSASK----------DESVRLWNVQTG----ICILI 91 (294)
Q Consensus 33 g~i~iw~~~~~~~~~~~~~h-~~~v~~~---~~~~~---~~~~l~s~~~----------dg~i~vwd~~~~----~~~~~ 91 (294)
+.|++.|..+.+.+.++.-. ...++++ .+... ...+++.|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888888887776655432 2334443 34431 1467777753 288999999884 22222
Q ss_pred eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec
Q 022590 92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 171 (294)
Q Consensus 92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 171 (294)
+.. ....++|++++-. ++. |+++. ++.|.+|++.... .............+.++
T Consensus 82 i~~-~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~---------------------~l~~~~~~~~~~~i~sl 135 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSK---------------------TLLKKAFYDSPFYITSL 135 (321)
T ss_dssp EEE-EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTS---------------------SEEEEEEE-BSSSEEEE
T ss_pred EEE-EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcc---------------------cchhhheecceEEEEEE
Confidence 211 1367889999877 445 43333 5899999999732 01111222233367777
Q ss_pred ceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC--
Q 022590 172 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP-- 249 (294)
Q Consensus 172 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 249 (294)
...++++++|.....+.++..+.... ....+. .......++++.|-+++ ..+++++.+|.+.++......
T Consensus 136 ~~~~~~I~vgD~~~sv~~~~~~~~~~-----~l~~va-~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~ 207 (321)
T PF03178_consen 136 SVFKNYILVGDAMKSVSLLRYDEENN-----KLILVA-RDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPN 207 (321)
T ss_dssp EEETTEEEEEESSSSEEEEEEETTTE------EEEEE-EESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SS
T ss_pred eccccEEEEEEcccCEEEEEEEccCC-----EEEEEE-ecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcc
Confidence 77799999999888888875543110 111222 22234557788888776 389999999999999987421
Q ss_pred ----c-eeeeeccccccCCCeEEE---EEccC--CC------EEEEeccCCcEEE
Q 022590 250 ----P-VLIARLSHAQSKSPIRQT---AMSYD--GS------TILSCCEDGAIWR 288 (294)
Q Consensus 250 ----~-~~~~~~~~~~~~~~v~~~---~~s~~--~~------~l~s~~~dg~i~v 288 (294)
. ..... ..-.....|+++ ++.|. +. .++-++.+|.|.+
T Consensus 208 ~~~~~~~L~~~-~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 208 SRDGDPKLERI-SSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TTTTTTBEEEE-EEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred cccccccceeE-EEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 1 11111 111233567777 55552 22 4777888998873
No 333
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.51 E-value=8.4e-05 Score=55.54 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=99.5
Q ss_pred ecCCCceEEEEeec-----CCeEEEEEcC-CccccceecccCcceEEEEeCCCCCceEEEe------------------e
Q 022590 18 CNVDGIPFLVAGGI-----NGIIRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSA------------------S 73 (294)
Q Consensus 18 ~~~~~~~~l~~~~~-----dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~------------------~ 73 (294)
|++||+ +|++.-. .|.|-|||.. +.+.+.++..|.-.-..+.+.| +++.|+.+ .
T Consensus 58 fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 58 FSPDGR-LLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EcCCCC-EEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhh
Confidence 359999 7777543 4899999998 6677788888877778899999 77666654 2
Q ss_pred CCCcEEEEEcCCCceEEEeecc-CCCCCceeEEEEecCCCceEEeeecCCc-------EEEEeccccccccccceeecCC
Q 022590 74 KDESVRLWNVQTGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNT-------VKIWSMKEFWTYVEKSFTWTDL 145 (294)
Q Consensus 74 ~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~-------i~~wd~~~~~~~~~~~~~~~~~ 145 (294)
.+..+...|..+|+.+...... .-|...|..|++.+ ++..++..-..|. +-+++....
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~------------- 201 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGA------------- 201 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCc-------------
Confidence 2345666677788877664321 13677899999998 6664443322221 222222210
Q ss_pred CCCCCCceeeeceEEeecCCCceeeccee--cceE-EEeeCCCeEEEecCCCCC
Q 022590 146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKE 196 (294)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~ 196 (294)
......+......-.+++-+++++ +..+ +++-..+.+.+||..++.
T Consensus 202 -----~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 202 -----LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred -----ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 000111112223345778888886 4445 566678899999999876
No 334
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.51 E-value=0.0002 Score=54.33 Aligned_cols=237 Identities=12% Similarity=0.047 Sum_probs=123.5
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee------
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA------ 93 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------ 93 (294)
..++ .|+.|+.+| +.+++.........+. +...|..+...| +-+.|++-+ |+.+.++++..-.......
T Consensus 5 ~~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGD-RLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCC-EEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3455 899999998 8999983332222222 233499999999 555555443 4999999987654433110
Q ss_pred -----ccCCCCCceeEEE-EecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590 94 -----GAGGHRNEVLSVD-FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 167 (294)
Q Consensus 94 -----~~~~~~~~v~~l~-~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (294)
........+...+ -....+...++......|.+|.......... ..... ..-+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~------------------~~~ke-~~lp~~ 140 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS------------------KLLKE-ISLPDP 140 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc------------------ceeEE-EEcCCC
Confidence 0001233444444 1122333444455566999998876211000 11111 223477
Q ss_pred eeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCcee---eeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590 168 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI---LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 244 (294)
Q Consensus 168 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d 244 (294)
+..+.|.++.++.|..+ ...+.|+.++........... .........++..+.... + .+|++- +..-.+.|
T Consensus 141 ~~~i~~~~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--e~Ll~~--~~~g~fv~ 214 (275)
T PF00780_consen 141 PSSIAFLGNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N--EFLLCY--DNIGVFVN 214 (275)
T ss_pred cEEEEEeCCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c--eEEEEe--cceEEEEc
Confidence 88888888888888754 478888886542111000000 000001112233333332 2 455543 33334444
Q ss_pred ccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 245 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.... +.....+.. .....++++. ..||+..+.++ |.||++.+
T Consensus 215 ~~G~-~~r~~~i~W---~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~ 256 (275)
T PF00780_consen 215 KNGE-PSRKSTIQW---SSAPQSVAYS--SPYLIAFSSNS-IEVRSLET 256 (275)
T ss_pred CCCC-cCcccEEEc---CCchhEEEEE--CCEEEEECCCE-EEEEECcC
Confidence 4333 222222221 1345566663 35888876655 99999875
No 335
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.50 E-value=0.00017 Score=52.92 Aligned_cols=206 Identities=8% Similarity=0.070 Sum_probs=109.9
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc-CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 86 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 86 (294)
.+.++.|+|. |+.+.++++....+.|..++. +|+.++.+.-. .+-.-.|++.. ++.++++--.++.+.+.++...
T Consensus 21 ~~e~SGLTy~--pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 21 LDELSGLTYN--PDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp -S-EEEEEEE--TTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE---
T ss_pred cCCccccEEc--CCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecc
Confidence 4569999998 876658888888999988886 57777776533 24567888876 6767766666899999988432
Q ss_pred c------eEEEee--ccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 87 I------CILIFA--GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 87 ~------~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
. ....+. ....+...+-.++|.| .++.|+.+-...-..++.++......... .......
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~------------~~~~~~~ 163 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLF------------VSDDQDL 163 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--E------------EEE-HHH
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCcccee------------ecccccc
Confidence 1 112222 1113556789999999 55556666666667777776511000000 0000000
Q ss_pred EEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC---------CCeeEEEEcccC
Q 022590 159 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE---------CDIWFIKFSCDF 226 (294)
Q Consensus 159 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~ 226 (294)
.........+.++.++ +++++.+..+..|..+|.. ++ .+..+.... ...-.++|.++|
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~---------~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GR---------VVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT------------EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CC---------EEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 0011223345666665 6678888888889889843 32 233333222 346678999988
Q ss_pred CcceEEEEcCCCeEEEE
Q 022590 227 HYNAAAIGNREGKIFVW 243 (294)
Q Consensus 227 ~~~~l~~~~~dg~i~i~ 243 (294)
. |+..++-+..++|
T Consensus 234 ~---LYIvsEpNlfy~f 247 (248)
T PF06977_consen 234 N---LYIVSEPNLFYRF 247 (248)
T ss_dssp ----EEEEETTTEEEEE
T ss_pred C---EEEEcCCceEEEe
Confidence 3 4455566655554
No 336
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.48 E-value=6.7e-05 Score=58.26 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=109.9
Q ss_pred CcEEEEEcCCCceEEEeeccCCCCCceeEEEEec---C---CCceEEeeec----------CCcEEEEeccccccccccc
Q 022590 76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP---S---DIYRIASCGM----------DNTVKIWSMKEFWTYVEKS 139 (294)
Q Consensus 76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~---~---~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~ 139 (294)
+.|++.|..+.+.+..+.- .....+.+++... . ...+|++|.. .|.|.++++....
T Consensus 2 s~i~l~d~~~~~~~~~~~l--~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~------ 73 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFEL--EPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP------ 73 (321)
T ss_dssp -EEEEEETTTSSEEEEEEE--ETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-------
T ss_pred cEEEEEeCCCCeEEEEEEC--CCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc------
Confidence 3588889888887766654 2334455554322 1 1567777753 2889999998730
Q ss_pred eeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590 140 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 219 (294)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (294)
..............+++|.++..-++.++++. ++.|.+|++...+ ..........+ ..+.+
T Consensus 74 -----------~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~------~l~~~~~~~~~-~~i~s 134 (321)
T PF03178_consen 74 -----------ENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSK------TLLKKAFYDSP-FYITS 134 (321)
T ss_dssp ---------------EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTS------SEEEEEEE-BS-SSEEE
T ss_pred -----------ccceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcc------cchhhheecce-EEEEE
Confidence 00001122223345788888887766655544 5899999998765 11122222222 23444
Q ss_pred EEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 220 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 220 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+ ...+ +++++|+....+.++..+.... ....+........++++.+-++++.++.+..+|.+.++...+
T Consensus 135 l--~~~~--~~I~vgD~~~sv~~~~~~~~~~-~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 135 L--SVFK--NYILVGDAMKSVSLLRYDEENN-KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp E--EEET--TEEEEEESSSSEEEEEEETTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred E--eccc--cEEEEEEcccCEEEEEEEccCC-EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 4 4444 4899999988899887765322 122222122345688999987767999999999999998764
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.4e-05 Score=64.85 Aligned_cols=152 Identities=9% Similarity=0.072 Sum_probs=102.8
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee-cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
..|.--++. ..++ +++.|+.-|.+++|+-..++....- .+..+.+..+..++ +..++|.|+..|.|.++-+..+.
T Consensus 34 ~~v~lTc~d--st~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 34 ARVKLTCVD--ATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred ceEEEEEee--cCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccC
Confidence 344444554 5676 9999999999999997666543322 22445666777888 77889999999999999887643
Q ss_pred eEE---EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590 88 CIL---IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164 (294)
Q Consensus 88 ~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
... .-..-..|...|++++|++ ++..+++|...|+|.+-.+.... ....+...+..-
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~-------------------~~~~~~q~il~~ 169 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQ-------------------AFLSKSQEILSE 169 (726)
T ss_pred CCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhh-------------------hhccccceeecc
Confidence 221 1111124788999999999 99999999999999988877610 002223334445
Q ss_pred CCceeecceecceEEEeeCC
Q 022590 165 SNYVDCNRWLGDFILSKSVD 184 (294)
Q Consensus 165 ~~~i~~~~~~~~~l~~~~~d 184 (294)
...|..+.+...+|++++.-
T Consensus 170 ds~IVQlD~~q~~LLVStl~ 189 (726)
T KOG3621|consen 170 DSEIVQLDYLQSYLLVSTLT 189 (726)
T ss_pred CcceEEeecccceehHhhhh
Confidence 56677777765555554443
No 338
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.7e-06 Score=69.17 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=79.4
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceE-EEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
-.|.-+.|+ |.-. ++|.+..+|.|.+..+. .+.+.++.-|..+++ +++|.| +|++||.|-.||+|++.|++++.
T Consensus 21 ~~i~~~ewn--P~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWN--PKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEc--Cccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCC
Confidence 356778898 6666 99999999999999987 777788887888888 999999 89999999999999999999998
Q ss_pred eEEEeeccCCCCCceeEEEEec
Q 022590 88 CILIFAGAGGHRNEVLSVDFHP 109 (294)
Q Consensus 88 ~~~~~~~~~~~~~~v~~l~~~~ 109 (294)
.+..+.. ....+|.++.|.+
T Consensus 96 ~l~~~~~--s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLF--SVETDISKGIWDR 115 (665)
T ss_pred ceecccc--ccccchheeeccc
Confidence 8877321 2667889999975
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.31 E-value=0.0012 Score=54.43 Aligned_cols=237 Identities=14% Similarity=0.080 Sum_probs=124.7
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcc--eEEEEeCCC-CCceEEEee---------CCCcEEEEEcCCCceEEEe
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDS--INEIRTQPL-KPSLVVSAS---------KDESVRLWNVQTGICILIF 92 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~--v~~~~~~~~-~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~ 92 (294)
.++.++.+|.|+-+|.++++.+..+...... -..+.-+|. .+.+++.++ .+|.+.-+|..+|+.+-.+
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 6888889999999999999988776543221 001111110 113444443 3678999999999988877
Q ss_pred eccCCCC-----------------Cce-eEEEEecCCCceEEeeecCC------------------cEEEEecccccccc
Q 022590 93 AGAGGHR-----------------NEV-LSVDFHPSDIYRIASCGMDN------------------TVKIWSMKEFWTYV 136 (294)
Q Consensus 93 ~~~~~~~-----------------~~v-~~l~~~~~~~~~l~~~~~dg------------------~i~~wd~~~~~~~~ 136 (294)
....... ..+ ....+.+ .+..++.++.++ .+.-+|..+++..-
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 192 YTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 5311000 001 1234444 445566666554 67778887754332
Q ss_pred ccceeecCCCCCCCCceeeeceEEeecCCCc-eeec-ceec---ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee
Q 022590 137 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNY-VDCN-RWLG---DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 211 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~-~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 211 (294)
......... ........+ +..+ ..++ ..++.++.+|.+...|.++++... ...
T Consensus 271 ~~~~~~~~~-------------~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W---------~~~ 328 (488)
T cd00216 271 FYQTTPHDL-------------WDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS---------ARP 328 (488)
T ss_pred EeeCCCCCC-------------cccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee---------EeE
Confidence 221110000 000000000 0011 0122 267788889999999999887422 111
Q ss_pred cCCCCeeEEEEcccCCcceEEE------------------EcCCCeEEEEeccCCCceeeeeccccccC----CCe--EE
Q 022590 212 VPECDIWFIKFSCDFHYNAAAI------------------GNREGKIFVWELQSSPPVLIARLSHAQSK----SPI--RQ 267 (294)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~~l~~------------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~v--~~ 267 (294)
.. ...+..+| + .++. ...+|.+.-.|+.+++.+.........+. .+. ..
T Consensus 329 ~~---~~~~~~~~-~---~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~ 401 (488)
T cd00216 329 EV---EQPMAYDP-G---LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGS 401 (488)
T ss_pred ee---ccccccCC-c---eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcc
Confidence 10 00122222 1 1222 22467888888888876555544310000 111 11
Q ss_pred EEEccCCCEEEEeccCCcEEEEecCC
Q 022590 268 TAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 268 ~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+. ..+.+|+.++.||.|+.+|.++
T Consensus 402 ~~--~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 402 LA--TAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred eE--ecCCeEEEECCCCeEEEEECCC
Confidence 22 2456888889999999988764
No 340
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.31 E-value=0.00015 Score=45.24 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=52.9
Q ss_pred eEEEEeCCC---CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 56 INEIRTQPL---KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 56 v~~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
|++|++... +.+.|++|+.|..||+|+- .+.+..+. -.+.|++|+-.. . ..|+.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~----e~~~v~~L~~~~-~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT----ETDKVTSLCSLG-G-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe----cccceEEEEEcC-C-CEEEEEecCCEEEEEeCcc
Confidence 667776553 3368999999999999984 46777776 567788888875 4 6699999999999997654
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.27 E-value=0.0003 Score=59.86 Aligned_cols=148 Identities=10% Similarity=0.018 Sum_probs=93.5
Q ss_pred CCceEEE-eeCCCcEEEEEcCCCceEEEeeccCCCCC-ceeEEEEec----CCCceEEeeecCCcEEEEecccccccccc
Q 022590 65 KPSLVVS-ASKDESVRLWNVQTGICILIFAGAGGHRN-EVLSVDFHP----SDIYRIASCGMDNTVKIWSMKEFWTYVEK 138 (294)
Q Consensus 65 ~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~l~~~~----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 138 (294)
+.++|+. ......|.-.|++.|+.+..+.. |.. +|..++-.. -.+..-+.|-.+..+..||.|.......
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~---~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v- 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV---HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV- 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeec---CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-
Confidence 4444443 34567899999999999999984 443 355554321 1233456677788999999996321000
Q ss_pred ceeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCe
Q 022590 139 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI 217 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (294)
.. ............|++-. ..+||+|+.+|.||+||-- +. .....+++-..+|
T Consensus 568 ----------------~~-~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~--------~AKT~lp~lG~pI 621 (794)
T PF08553_consen 568 ----------------DS-QSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GK--------RAKTALPGLGDPI 621 (794)
T ss_pred ----------------ec-cccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-ch--------hhhhcCCCCCCCe
Confidence 00 00011233445555555 6799999999999999942 22 1344556667899
Q ss_pred eEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590 218 WFIKFSCDFHYNAAAIGNREGKIFVWEL 245 (294)
Q Consensus 218 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 245 (294)
..+..+.||+ ++++.+ +..+.+++.
T Consensus 622 ~~iDvt~DGk--wilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGK--WILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCCc--EEEEee-cceEEEEEE
Confidence 9999999994 555444 556777775
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.27 E-value=0.0011 Score=53.24 Aligned_cols=49 Identities=12% Similarity=0.320 Sum_probs=37.5
Q ss_pred cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
.|.||+. .|+.+..+.- -.+.|.++.|.. + ..|++...||.++++|+..
T Consensus 62 ~I~iys~-sG~ll~~i~w---~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPW---DSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECC-CCCEeEEEEE---CCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCC
Confidence 4888887 6777776653 227899999986 4 4466777899999999875
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=3.7e-05 Score=64.19 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=60.6
Q ss_pred eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
+.++||. |..- .|+.|-.-|.+.+|...+.+.......|..+|..+.|++ +|..++++..-|.+.+|...
T Consensus 62 atSLCWH--pe~~-vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWH--PEEF-VLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccC--hHHH-HHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 3557775 7765 889999999999999888777666678999999999999 99999999999999999876
No 344
>PHA02713 hypothetical protein; Provisional
Probab=98.19 E-value=0.00086 Score=56.10 Aligned_cols=217 Identities=12% Similarity=0.107 Sum_probs=104.2
Q ss_pred eEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCC------CcEEEEEcCCCceEEEeeccCCCCCceeEE
Q 022590 34 IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICILIFAGAGGHRNEVLSV 105 (294)
Q Consensus 34 ~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l 105 (294)
.+..||..+++-. ..+...... .+++.. ++.+++.|+.+ ..+..||..++.-. .+..+...... .++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~-~~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCR-FSL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhc-eeE
Confidence 4677887765422 222211111 122222 56777788754 34677888766432 22211011111 123
Q ss_pred EEecCCCceEEeeecCC-----cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEE
Q 022590 106 DFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS 180 (294)
Q Consensus 106 ~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 180 (294)
+.. ++.+.+.||.++ .+..||..+.. |...+ .+.........+..++.+.+.
T Consensus 348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~--------W~~~~-------------~mp~~r~~~~~~~~~g~IYvi 404 (557)
T PHA02713 348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDK--------WKMLP-------------DMPIALSSYGMCVLDQYIYII 404 (557)
T ss_pred EEE--CCEEEEECCcCCCCCCceEEEEECCCCe--------EEECC-------------CCCcccccccEEEECCEEEEE
Confidence 332 677888888764 36778876521 11100 000011111222334666666
Q ss_pred eeCC-----------------------CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590 181 KSVD-----------------------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 237 (294)
Q Consensus 181 ~~~d-----------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 237 (294)
|+.+ ..+..||+.+.+- ..+......... .....-++ .+.+.|+.+
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-------~~v~~m~~~r~~--~~~~~~~~--~IYv~GG~~ 473 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-------ETLPNFWTGTIR--PGVVSHKD--DIYVVCDIK 473 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCCeE-------eecCCCCccccc--CcEEEECC--EEEEEeCCC
Confidence 6654 2467788776532 111111111111 11122233 355556543
Q ss_pred ------CeEEEEeccC-CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC--cEEEEecCC
Q 022590 238 ------GKIFVWELQS-SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG--AIWRWDAIP 293 (294)
Q Consensus 238 ------g~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~vw~~~~ 293 (294)
..+..||..+ .+......++ ........+.+ +++..++|+.|| .+..||..+
T Consensus 474 ~~~~~~~~ve~Ydp~~~~~W~~~~~m~--~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 474 DEKNVKTCIFRYNTNTYNGWELITTTE--SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCCccceeEEEecCCCCCCeeEccccC--cccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 2467899988 5654444443 22222222333 778888999888 677777654
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.18 E-value=4.8e-06 Score=41.65 Aligned_cols=38 Identities=29% Similarity=0.632 Sum_probs=32.8
Q ss_pred cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
+....+..|...|.++.|.+ .+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 44566678889999999999 778999999999999996
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.14 E-value=0.0019 Score=53.35 Aligned_cols=179 Identities=13% Similarity=0.040 Sum_probs=104.8
Q ss_pred CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC----cEEEEeccccccccccceeecCCCCCC
Q 022590 74 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKF 149 (294)
Q Consensus 74 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~ 149 (294)
..+.+.+.|.++.+....+. -.+....+.++| ++.++++.+.+. ++..-+....
T Consensus 213 y~~~vSvID~etmeV~~qV~----Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~----------------- 270 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVM----VDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAER----------------- 270 (635)
T ss_pred eeEEEEEEECccceEEEEEE----eCCCcccceECC-CCCEEEEeccCcccCcceeeeccccC-----------------
Confidence 34566777777776666655 333556778888 666666655321 2222222110
Q ss_pred CCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590 150 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 229 (294)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 229 (294)
. .........+..+.-+|++... .++.|.+.|.++.... ....+..++. ......+.++||++ .
T Consensus 271 ------d--~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~----~~~v~~yIPV-GKsPHGV~vSPDGk-y 334 (635)
T PRK02888 271 ------D--WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANA----GSALTRYVPV-PKNPHGVNTSPDGK-Y 334 (635)
T ss_pred ------c--eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccC----CcceEEEEEC-CCCccceEECCCCC-E
Confidence 0 0001111111122223655555 3678999998861100 0124444444 34567899999997 4
Q ss_pred eEEEEcCCCeEEEEeccCCCcee----------eeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 230 AAAIGNREGKIFVWELQSSPPVL----------IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+++++..++.+.++|+.+.+... ..... - ...-...+|+++|....|---|..|-.||+..
T Consensus 335 lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 335 FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 66677789999999998865311 12221 1 22345688999999888888999999999863
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.14 E-value=0.0015 Score=52.64 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=77.0
Q ss_pred CceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590 66 PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 145 (294)
Q Consensus 66 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 145 (294)
|.+|...+. +.|.+||+.+++.+..+. .. +|..+.|++ ++.+++..+.+ .+.+++........
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~----v~-~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~--------- 179 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRID----VS-AVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAA--------- 179 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEES----S--E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHH---------
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEe----cC-CCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhccc---------
Confidence 566666655 479999999999999886 33 489999998 88878877755 78887765421000
Q ss_pred CCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEccc
Q 022590 146 PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 225 (294)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 225 (294)
...............-...|.+..|.++.|+-.+.. .++. +..++ ...+..+ ..++.-+...+.
T Consensus 180 ---~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge-------~~~i~~l---d~~~yllgy~~~ 243 (443)
T PF04053_consen 180 ---IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGE-------TGIIAHL---DKPLYLLGYLPK 243 (443)
T ss_dssp ---BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTE-------EEEEEE----SS--EEEEEETT
T ss_pred ---ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCC-------cceEEEc---CCceEEEEEEcc
Confidence 000000112223333357888999987766655555 7766 33332 1233333 445667777775
Q ss_pred CCcceEEEEcCCCeEEEEeccC
Q 022590 226 FHYNAAAIGNREGKIFVWELQS 247 (294)
Q Consensus 226 ~~~~~l~~~~~dg~i~i~d~~~ 247 (294)
. +.+.....++.+..+.+..
T Consensus 244 ~--~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 244 E--NRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp T--TEEEEE-TT--EEEEE--H
T ss_pred C--CEEEEEECCCCEEEEEECH
Confidence 4 4677778888888887654
No 348
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.13 E-value=0.001 Score=55.63 Aligned_cols=225 Identities=14% Similarity=0.149 Sum_probs=120.3
Q ss_pred EEEEeecCC------eEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCC------CcEEEEEcCCCceEE
Q 022590 25 FLVAGGING------IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICIL 90 (294)
Q Consensus 25 ~l~~~~~dg------~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~ 90 (294)
+++.|+.++ .+..||..+++-. ..+. ....-.+++.. ++.+.++|+.| .++..||..+++-..
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 778888773 6788888776332 2222 22334455555 45788999998 356778887776333
Q ss_pred EeeccCCCCCceeEEEEecCCCceEEeeecCCc-----EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT-----VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
...+...... .+++.. ++.+.++||.||. +-.||..+..- ..+.......
T Consensus 364 -~a~M~~~R~~-~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W---------------------~~va~m~~~r 418 (571)
T KOG4441|consen 364 -VAPMNTKRSD-FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW---------------------TPVAPMLTRR 418 (571)
T ss_pred -cCCccCcccc-ceeEEE--CCEEEEEeccccccccccEEEecCCCCcc---------------------cccCCCCcce
Confidence 2221111111 122222 7888999999864 55566655211 1111111122
Q ss_pred CceeecceecceEEEeeCCC------eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590 166 NYVDCNRWLGDFILSKSVDN------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 239 (294)
Q Consensus 166 ~~i~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 239 (294)
.......+.+.+.++|+.++ .+..||..+..- ..+........... ++.- ++ .+.+.|+.++.
T Consensus 419 ~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-------~~~~~M~~~R~~~g-~a~~-~~--~iYvvGG~~~~ 487 (571)
T KOG4441|consen 419 SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW-------TLIAPMNTRRSGFG-VAVL-NG--KIYVVGGFDGT 487 (571)
T ss_pred eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-------eecCCcccccccce-EEEE-CC--EEEEECCccCC
Confidence 22333444577888888554 577889887642 22222222222111 2222 23 46677776653
Q ss_pred -----EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCc-----EEEEecC
Q 022590 240 -----IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA-----IWRWDAI 292 (294)
Q Consensus 240 -----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----i~vw~~~ 292 (294)
|..||..+.+........ .....+-... -+++..+.|+.||. |..||..
T Consensus 488 ~~~~~VE~ydp~~~~W~~v~~m~--~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 488 SALSSVERYDPETNQWTMVAPMT--SPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred CccceEEEEcCCCCceeEcccCc--cccccccEEE--ECCEEEEEecccCccccceeEEcCCC
Confidence 788999888765554333 2222222222 25667778888774 5555543
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.12 E-value=0.0029 Score=50.84 Aligned_cols=218 Identities=14% Similarity=0.045 Sum_probs=108.0
Q ss_pred EeecCCCceEEEEeecC----------C-eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 16 WACNVDGIPFLVAGGIN----------G-IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 16 ~~~~~~~~~~l~~~~~d----------g-~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
++..|.|. .+|....+ . .|+||+. .|+++.++.-..+.+.++.|+. + ..|+.-..||+++++|+.
T Consensus 34 va~a~~gG-pIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGG-PIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCc-eEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCC
Confidence 33446666 55555443 1 5888885 5666666654458999999987 4 456667789999999985
Q ss_pred CCceEEEeecc------CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccc-cceeecCCCCCCCCceeeec
Q 022590 85 TGICILIFAGA------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE-KSFTWTDLPSKFPTKYVQFP 157 (294)
Q Consensus 85 ~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 157 (294)
|+. .+... .-....+....+.. +|-.++ ..++.+.+. ........ .... ..+..
T Consensus 110 -G~~--~fsl~~~i~~~~v~e~~i~~~~~~~-~GivvL--t~~~~~~~v--~n~~~~~~~~~~~--~~p~~--------- 170 (410)
T PF04841_consen 110 -GEF--QFSLGEEIEEEKVLECRIFAIWFYK-NGIVVL--TGNNRFYVV--NNIDEPVKLRRLP--EIPGL--------- 170 (410)
T ss_pred -Cce--eechhhhccccCcccccccccccCC-CCEEEE--CCCCeEEEE--eCccccchhhccc--cCCCc---------
Confidence 443 22210 01111222223332 443333 334444333 32111100 0000 00000
Q ss_pred eEEeecCCC--ceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590 158 VFIASVHSN--YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 235 (294)
Q Consensus 158 ~~~~~~~~~--~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 235 (294)
......+.. .+..+.-+....+....++.+.+.+-...+ ... ..+++..+++||++ .++|.-.
T Consensus 171 ~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~------------~i~-~~~~i~~iavSpng--~~iAl~t 235 (410)
T PF04841_consen 171 WTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK------------QID-SDGPIIKIAVSPNG--KFIALFT 235 (410)
T ss_pred ccccccccccccceEeecCcceEEEEecCCEEEEEEccccc------------ccc-CCCCeEEEEECCCC--CEEEEEE
Confidence 000000111 011111123344444555666644433211 011 23578999999999 5788888
Q ss_pred CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590 236 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 274 (294)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (294)
.+|.+.+.+..-.+........ .......|.|.-+.
T Consensus 236 ~~g~l~v~ssDf~~~~~e~~~~---~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 236 DSGNLWVVSSDFSEKLCEFDTD---SKSPPKQMAWCGND 271 (410)
T ss_pred CCCCEEEEECcccceeEEeecC---cCCCCcEEEEECCC
Confidence 8899988876655433333322 22345667776543
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.05 E-value=0.0002 Score=56.68 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=86.3
Q ss_pred ceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEE
Q 022590 101 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS 180 (294)
Q Consensus 101 ~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 180 (294)
.|+.+.|.+ +...|++|...|.+.+|.....+...... ..+.. . ...-.+.
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~---------------~~~~~--~-----~~~~~~~------ 53 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNRE---------------QPPDL--D-----YNFRRFS------ 53 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE----------------------------------------S--------
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccC---------------CCccc--C-----ccccccc------
Confidence 588999999 66679999999999999988732211000 00000 0 0000000
Q ss_pred eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc--
Q 022590 181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH-- 258 (294)
Q Consensus 181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 258 (294)
..++.-.+-|+.............+..-+....++|++++.|.-| +++.|.++|.+.|.|++....+....+..
T Consensus 54 -~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~ 129 (395)
T PF08596_consen 54 -LNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESF 129 (395)
T ss_dssp -GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--
T ss_pred -ccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccc
Confidence 001111222333222111111223444455557889999999777 99999999999999998876544433332
Q ss_pred --cccCCCeEEEEEcc-----CC---CEEEEeccCCcEEEEecC
Q 022590 259 --AQSKSPIRQTAMSY-----DG---STILSCCEDGAIWRWDAI 292 (294)
Q Consensus 259 --~~~~~~v~~~~~s~-----~~---~~l~s~~~dg~i~vw~~~ 292 (294)
......|+++.|+. |+ -.|++|...|.+.+|.+-
T Consensus 130 ~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 130 LSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred cccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 12345688888873 32 478899999999999875
No 351
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=1e-05 Score=56.79 Aligned_cols=106 Identities=8% Similarity=0.121 Sum_probs=67.7
Q ss_pred cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590 175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 254 (294)
Q Consensus 175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (294)
+..+++|+.+|.|.+|....... ....+......+.++ +..-....+..++..+|.|+.|++...+.+..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~--------~~d~~~s~~e~i~~~-Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~- 139 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA--------HSDRVCSGEESIDLG-IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY- 139 (238)
T ss_pred CceEEeecccceEEEecCCccch--------HHHhhhcccccceec-cccccccceeEEeccCCceeeeccccCceeee-
Confidence 67899999999999999873221 111111111222221 21111125888999999999999988763322
Q ss_pred eccccccC-CCeEEEEEccCCCEEEEe--ccCCcEEEEecCC
Q 022590 255 RLSHAQSK-SPIRQTAMSYDGSTILSC--CEDGAIWRWDAIP 293 (294)
Q Consensus 255 ~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~dg~i~vw~~~~ 293 (294)
.. .|. .++..+..+..+++++.+ |.|..++.|+++.
T Consensus 140 -~g--~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 140 -VG--QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -ec--cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22 333 566667777777888888 8888888998763
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.03 E-value=0.0026 Score=51.27 Aligned_cols=224 Identities=11% Similarity=0.056 Sum_probs=110.9
Q ss_pred eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590 11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL 90 (294)
Q Consensus 11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 90 (294)
...++++ |+|+ ++++ +.||...|+.....+.. ..+.-...+|.+ .++ +|+-...++|.++.--+.+...
T Consensus 35 p~~ls~n--pngr-~v~V-~g~geY~iyt~~~~r~k-----~~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 35 PQSLSHN--PNGR-FVLV-CGDGEYEIYTALAWRNK-----AFGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SEEEE---TTSS-EEEE-EETTEEEEEETTTTEEE-----EEEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CeeEEEC--CCCC-EEEE-EcCCEEEEEEccCCccc-----ccCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccce
Confidence 3455555 9998 6655 67888889883332221 224456788988 544 6666768899996433333333
Q ss_pred EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceee
Q 022590 91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 170 (294)
Q Consensus 91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (294)
.+. ....+..|-. |.+|...+. +.|.+||+.+ ...+..+... +|..
T Consensus 104 ~i~----~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~-----------------------~~~i~~i~v~--~vk~ 149 (443)
T PF04053_consen 104 SIK----LPFSVEKIFG----GNLLGVKSS-DFICFYDWET-----------------------GKLIRRIDVS--AVKY 149 (443)
T ss_dssp --------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT-------------------------EEEEESS---E-EE
T ss_pred EEc----CCcccceEEc----CcEEEEECC-CCEEEEEhhH-----------------------cceeeEEecC--CCcE
Confidence 443 2223444432 566666654 4899999998 3334444332 4888
Q ss_pred ccee--cceEEEeeCCCeEEEecCCCC--CCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590 171 NRWL--GDFILSKSVDNEIVLWEPKMK--EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 246 (294)
Q Consensus 171 ~~~~--~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 246 (294)
+.|+ +++++..+.+ .+.+++.... ......+....+.....-...|.+..|..+- ++.+... .++. +-
T Consensus 150 V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~---fiYtT~~--~lkY--l~ 221 (443)
T PF04053_consen 150 VIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDC---FIYTTSN--HLKY--LV 221 (443)
T ss_dssp EEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTE---EEEE-TT--EEEE--EE
T ss_pred EEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCE---EEEEcCC--eEEE--EE
Confidence 9998 6677776654 5666654432 0000011111222232224567788887662 4444432 6665 55
Q ss_pred CCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 247 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
.++......+. .++.=+.+.|..+.+.....|+.+..+.+.
T Consensus 222 ~Ge~~~i~~ld-----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 222 NGETGIIAHLD-----KPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTEEEEEEE-S-----S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred cCCcceEEEcC-----CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 55433333332 456777888877889999999998888764
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.01 E-value=2.6e-05 Score=38.79 Aligned_cols=38 Identities=37% Similarity=0.567 Sum_probs=31.7
Q ss_pred ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEe
Q 022590 87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 128 (294)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd 128 (294)
+....+. .|...|.++.|++ ...++++++.|+.+++|+
T Consensus 3 ~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLK---GHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEE---ecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 3445555 5888999999999 778899999999999996
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=8.2e-05 Score=59.93 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=64.8
Q ss_pred CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee-EEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 53 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 53 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
...|.-+.|+| ...++|.+..+|.|.+..+. .+.+..+.. |..+++ +++|.| +|+.|++|-.||+|++.|+.+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~---p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPI---PGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccC---CCCccceeeeecC-CCCEEEEEecCCeEEEEEccC
Confidence 34678899999 88999999999999999997 777777763 666666 999999 899999999999999999998
Q ss_pred c
Q 022590 132 F 132 (294)
Q Consensus 132 ~ 132 (294)
+
T Consensus 94 ~ 94 (665)
T KOG4640|consen 94 G 94 (665)
T ss_pred C
Confidence 4
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.96 E-value=0.0029 Score=49.96 Aligned_cols=234 Identities=12% Similarity=0.118 Sum_probs=117.4
Q ss_pred cCCCceEEEEe---------ecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590 19 NVDGIPFLVAG---------GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 89 (294)
Q Consensus 19 ~~~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 89 (294)
|||++ +++.. +..+.+.|||+++++....... ...+....|+| +++.++... ++.|.+++..+++..
T Consensus 1 S~d~~-~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGK-FVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSS-EEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCC-eEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeE
Confidence 48888 55542 2346799999998765444443 67889999999 788877765 578999998777544
Q ss_pred EEeeccC-----CC---------CCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590 90 LIFAGAG-----GH---------RNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 154 (294)
Q Consensus 90 ~~~~~~~-----~~---------~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (294)
+...... |- -+.-..+-|+| +++.|+... .+..++.+.+........
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~----------------- 138 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS----------------- 138 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE-----------------
T ss_pred EeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc-----------------
Confidence 3222100 00 12236788999 666666654 456666666554211000
Q ss_pred eeceEEeecCCCceeecceecceEEEeeCCC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590 155 QFPVFIASVHSNYVDCNRWLGDFILSKSVDN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 232 (294)
Q Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 232 (294)
..|. +..+.+ =..|...- .+.++|+.+++... ............-+..+.|.+++...++.
T Consensus 139 ~yp~---------~~~~~Y----Pk~G~~np~v~l~v~~~~~~~~~~----~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 139 QYPE---------VESIRY----PKAGDPNPRVSLFVVDLASGKTTE----LDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp SS-E---------EEEEE------BTTS---EEEEEEEESSSTCCCE----E---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred cCCc---------cccccc----CCCCCcCCceEEEEEECCCCcEEE----eeeccccCCCccCcccceecCCCcEEEEE
Confidence 0000 111111 00111112 36668887665310 00000112234557788999998411222
Q ss_pred EEcCC---CeEEEEeccCCCceeeeeccccccCCCeEEEEEc-cCCC-EEEEeccCCcEEEEec
Q 022590 233 IGNRE---GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGS-TILSCCEDGAIWRWDA 291 (294)
Q Consensus 233 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~-~l~s~~~dg~i~vw~~ 291 (294)
....+ ..+.++|..+++..........+--..-....+. +++. +|.....||.-+||-+
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 22222 3466777777655444433322222233455654 5554 5555557776555543
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.94 E-value=0.00055 Score=58.38 Aligned_cols=146 Identities=16% Similarity=0.102 Sum_probs=90.3
Q ss_pred CCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc-eeeccee-------cceEEEe
Q 022590 111 DIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY-VDCNRWL-------GDFILSK 181 (294)
Q Consensus 111 ~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~-------~~~l~~~ 181 (294)
+.++|+.. .....|+-.|+..+ ..+.....+... |..+..+ +...+.|
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~G-----------------------KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflG 548 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERG-----------------------KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLG 548 (794)
T ss_pred ccceEeecCCCCCceEEEecCCC-----------------------cEEEEeecCCCcceeEecccccccccCCCceEEE
Confidence 34444443 34566777777773 334444444433 4444432 3456677
Q ss_pred eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccccc
Q 022590 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS 261 (294)
Q Consensus 182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 261 (294)
-.+..+..||+|....... ......+ .......+++-+.+| +||+|+.+|.||+||--. . ..... ..+-
T Consensus 549 ls~n~lfriDpR~~~~k~v---~~~~k~Y-~~~~~Fs~~aTt~~G---~iavgs~~G~IRLyd~~g-~-~AKT~--lp~l 617 (794)
T PF08553_consen 549 LSDNSLFRIDPRLSGNKLV---DSQSKQY-SSKNNFSCFATTEDG---YIAVGSNKGDIRLYDRLG-K-RAKTA--LPGL 617 (794)
T ss_pred ECCCceEEeccCCCCCcee---ecccccc-ccCCCceEEEecCCc---eEEEEeCCCcEEeecccc-h-hhhhc--CCCC
Confidence 7888999999996431000 0011111 234456777777777 799999999999999432 1 12222 3366
Q ss_pred CCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
..||..|..+.||++|++.+ +..|.+++.
T Consensus 618 G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 618 GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 78999999999999988775 445666664
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.91 E-value=0.0039 Score=45.26 Aligned_cols=105 Identities=20% Similarity=0.128 Sum_probs=78.0
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 99 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 99 (294)
++.+.+++.|+..+.+.--|..+|+.+.+-. -..++.+-+.- -+++++.|...|.+.+.+..+|+....+.. .
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~ 92 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----L 92 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeee----h
Confidence 5566699999999999999999998765432 22333333322 246799999999999999999988888873 2
Q ss_pred CceeEE-EEecCCCceEEeeecCCcEEEEecccc
Q 022590 100 NEVLSV-DFHPSDIYRIASCGMDNTVKIWSMKEF 132 (294)
Q Consensus 100 ~~v~~l-~~~~~~~~~l~~~~~dg~i~~wd~~~~ 132 (294)
+.|.+- ...+ ++.++..|+.|++.+..|.++.
T Consensus 93 ~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 93 ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred hhhccceEEcC-CCceEEEecCCCcEEEeccccc
Confidence 333332 2344 7788999999999999999983
No 358
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=0.0019 Score=53.34 Aligned_cols=157 Identities=12% Similarity=0.112 Sum_probs=88.6
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee--------------------------
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-------------------------- 73 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------------------------- 73 (294)
|||+.+..+.-..+.+.+.|.++.+...++.-- +...-++++| ++.++++.+
T Consensus 202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 466522233333466777777776655554422 2334556666 555554443
Q ss_pred --------------CCCcEEEEEcCC-----CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccc
Q 022590 74 --------------KDESVRLWNVQT-----GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 134 (294)
Q Consensus 74 --------------~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 134 (294)
.+++|.+.|..+ .+.+..+. -......+.++|++...++++..+.++.|.|+.+...
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 235578888777 34444444 5556788999994444555566799999999998554
Q ss_pred ccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCC
Q 022590 135 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM 194 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~ 194 (294)
.....+... ......... ...-...+|+ |+...+..-|..|..||+..
T Consensus 356 ~~~~~~~~~-----------~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKIKPR-----------DAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccCCcc-----------ceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 332221110 000111111 1112233444 56777778899999999876
No 359
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.86 E-value=0.004 Score=45.83 Aligned_cols=192 Identities=14% Similarity=0.041 Sum_probs=99.9
Q ss_pred CCCceEEEEeecCC--eEEEEEcCCccccceecccCc-ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC
Q 022590 20 VDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 96 (294)
Q Consensus 20 ~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 96 (294)
.+|. ++-+.+..| .|+.+|+.+++......-... ---.+... ++.+..-.-.++...+||..+-+.+..+.
T Consensus 54 ~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~--- 127 (264)
T PF05096_consen 54 DDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFP--- 127 (264)
T ss_dssp ETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE---
T ss_pred CCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEe---
Confidence 5676 677777666 789999999987655442211 11223333 34666667788999999999999998887
Q ss_pred CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc
Q 022590 97 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 176 (294)
Q Consensus 97 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 176 (294)
..+.=+.|+. ++..|+.+.....++.+|..++.......+.....+ ...+..+....+.|.+-.|..+
T Consensus 128 -y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p--------v~~LNELE~i~G~IyANVW~td 195 (264)
T PF05096_consen 128 -YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP--------VSNLNELEYINGKIYANVWQTD 195 (264)
T ss_dssp --SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-----------EEEEEEETTEEEEEETTSS
T ss_pred -cCCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEE--------CCCcEeEEEEcCEEEEEeCCCC
Confidence 4556677774 445566665567899999887544332222211111 1112233444455555555433
Q ss_pred eEEEe-eCCCe-EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590 177 FILSK-SVDNE-IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 235 (294)
Q Consensus 177 ~l~~~-~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 235 (294)
.++.- -..|. +..+|+........ ..........-.+.+++.|..+ .++++|-
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~-----~~~~~~~~~dVLNGIAyd~~~~-~l~vTGK 250 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVG-----RDKSRQPDDDVLNGIAYDPETD-RLFVTGK 250 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHT-----STTST--TTS-EEEEEEETTTT-EEEEEET
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhccc-----ccccccccCCeeEeEeEeCCCC-EEEEEeC
Confidence 33322 22232 23334332110000 0000011135678899999886 6777774
No 360
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0035 Score=54.33 Aligned_cols=100 Identities=13% Similarity=0.243 Sum_probs=73.5
Q ss_pred EEEEeecCCeEEEEEcCCc-cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590 25 FLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 103 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 103 (294)
.++.|+..|.+...|+... .+...=..-.++|++++|+. ++..++.|-.+|.|.+||+.+++.++.+.. |..+.+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e---~~ap~t 176 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITE---HGAPVT 176 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeee---cCCccc
Confidence 7899999999999887553 22122223467999999998 999999999999999999999999888874 444444
Q ss_pred EE---EEecCCCceEEeeecCCcEEEEeccc
Q 022590 104 SV---DFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 104 ~l---~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
.+ .+.. ++..++++...|. +|.+.-
T Consensus 177 ~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 177 GVIFVGRTS-QNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eEEEEEEeC-CCcEEEEccCCCc--eEEEEe
Confidence 43 3443 5567888877776 666543
No 361
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.0063 Score=45.07 Aligned_cols=212 Identities=10% Similarity=0.138 Sum_probs=123.6
Q ss_pred ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEe
Q 022590 49 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 128 (294)
Q Consensus 49 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd 128 (294)
+.+-...+.++.|+| +.+.|++......-.|+=..+|+.+..+.... -...-.|.+.. ++.+.++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g--~~DpE~Ieyig-~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG--FSDPETIEYIG-GNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccc--cCChhHeEEec-CCEEEEEehhcceEEEEE
Confidence 344456699999999 66667766666777677777899988876432 23456788886 777777777889999888
Q ss_pred ccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCC-CCCce
Q 022590 129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG-EGTAD 205 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~ 205 (294)
+.......... ....++......+.....++|+ ...|+.+-+-.-+.||.......... .....
T Consensus 157 vd~~t~~~~~~-------------~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~ 223 (316)
T COG3204 157 VDADTTVISAK-------------VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLD 223 (316)
T ss_pred EcCCccEEecc-------------ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccC
Confidence 87632211110 0022222222225566778887 56777777777777777664321100 00000
Q ss_pred eeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccc-----ccCCCeEEEEEccCCCEEEE
Q 022590 206 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA-----QSKSPIRQTAMSYDGSTILS 279 (294)
Q Consensus 206 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s 279 (294)
........-..+.++.|.+... .+++-+.+++.+.-.|....- .....+... .....-..++..++|..-++
T Consensus 224 ~~~~~~~f~~DvSgl~~~~~~~-~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 224 PTADRDLFVLDVSGLEFNAITN-SLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred cccccceEeeccccceecCCCC-cEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 0000011123466677876654 577778888888888876552 222222211 11234567888887764443
No 362
>PHA02713 hypothetical protein; Provisional
Probab=97.81 E-value=0.0017 Score=54.37 Aligned_cols=68 Identities=7% Similarity=0.002 Sum_probs=38.0
Q ss_pred ceecceEEEeeCC------CeEEEecCCC-CCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC--eEEE
Q 022590 172 RWLGDFILSKSVD------NEIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG--KIFV 242 (294)
Q Consensus 172 ~~~~~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--~i~i 242 (294)
..++.+.+.|+.+ ..+..||+.+ .+ +..+..++.+......+.+ ++ .+.++|+.+| .+..
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~m~~~r~~~~~~~~--~~--~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITTTESRLSALHTILH--DN--TIMMLHCYESYMLQDT 529 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccccCcccccceeEEE--CC--EEEEEeeecceeehhh
Confidence 3346666677654 2467899886 32 2223333322222222222 34 5777888887 7888
Q ss_pred EeccCCCc
Q 022590 243 WELQSSPP 250 (294)
Q Consensus 243 ~d~~~~~~ 250 (294)
||..+.+.
T Consensus 530 yd~~~~~W 537 (557)
T PHA02713 530 FNVYTYEW 537 (557)
T ss_pred cCcccccc
Confidence 88888764
No 363
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.77 E-value=0.012 Score=46.80 Aligned_cols=91 Identities=21% Similarity=0.284 Sum_probs=59.4
Q ss_pred EEEeecCCCceEEEEeecCCeEEE---EEcCC-c----cccceecc---cC--cceEEEEeCCC----------CCceEE
Q 022590 14 VSWACNVDGIPFLVAGGINGIIRV---IDVSN-E----KLHKSFVG---HG--DSINEIRTQPL----------KPSLVV 70 (294)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~dg~i~i---w~~~~-~----~~~~~~~~---h~--~~v~~~~~~~~----------~~~~l~ 70 (294)
+.++.+|+++ +||.+..+..+.+ |+... + .......+ +. ..|+++.+-|. +...++
T Consensus 5 ~~isls~~~d-~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~ 83 (415)
T PF14655_consen 5 CSISLSPDGD-LLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIA 83 (415)
T ss_pred ceEEecCCCC-EEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEE
Confidence 4455569999 8888877766655 53311 1 11111111 22 57888777553 457899
Q ss_pred EeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590 71 SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 109 (294)
Q Consensus 71 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~ 109 (294)
.|..+|.|++|.. +|..+..-. -|..+|..|....
T Consensus 84 VG~ssG~vrfyte-~G~LL~~Q~---~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 84 VGTSSGYVRFYTE-NGVLLLSQL---LHEEPVLKIKCRS 118 (415)
T ss_pred EEecccEEEEEec-cchHHHHHh---cCccceEEEEecc
Confidence 9999999999987 666554433 3888999998754
No 364
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.00023 Score=50.27 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=70.6
Q ss_pred EEEEeecCCeEEEEEcCC-ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC-Cce
Q 022590 25 FLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NEV 102 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v 102 (294)
-+++|+.+|.|.+|+... +.....+..-...|.++--.-.++.+..+++.||.|+.|++.-++.+.... .|. .++
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~ 148 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESG 148 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec---cccCCCc
Confidence 699999999999999762 222222222233444443333355688999999999999998887776655 466 556
Q ss_pred eEEEEecCCCceEEee--ecCCcEEEEeccc
Q 022590 103 LSVDFHPSDIYRIASC--GMDNTVKIWSMKE 131 (294)
Q Consensus 103 ~~l~~~~~~~~~l~~~--~~dg~i~~wd~~~ 131 (294)
..+.... .+..++.+ +.|..++.|++..
T Consensus 149 e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 6666555 55667776 7788888888776
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.0083 Score=48.28 Aligned_cols=177 Identities=13% Similarity=0.019 Sum_probs=94.5
Q ss_pred eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEe-e--CC-CcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590 34 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-S--KD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 109 (294)
Q Consensus 34 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~--~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~ 109 (294)
.+.+-|.+ +...+.+..-...+..-+|+| ++..++-. - .. ..+.++++.+++...... ..+.-..-+|+|
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fsp 247 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSP 247 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCC
Confidence 44444443 444555555556777788999 55544332 2 22 358899999887766654 444456678999
Q ss_pred CCCceEEeeecCCcEEE--EeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEee-CCCe
Q 022590 110 SDIYRIASCGMDNTVKI--WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS-VDNE 186 (294)
Q Consensus 110 ~~~~~l~~~~~dg~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~d~~ 186 (294)
++..++++...||...+ .|+..... . .+....+... -.+...+|+.++-.+ ..|.
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~--------------------~-~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~ 305 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNL--------------------P-RLTNGFGINT-SPSWSPDGSKIVFTSDRGGR 305 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcc--------------------e-ecccCCcccc-CccCCCCCCEEEEEeCCCCC
Confidence 55566666677776554 55554210 0 0111111111 222333466665544 4444
Q ss_pred --EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe--EEEEeccCCC
Q 022590 187 --IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK--IFVWELQSSP 249 (294)
Q Consensus 187 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~ 249 (294)
|.++|..... ...+......-..-.++|+++ .+++.+..+|. |.+.|+.++.
T Consensus 306 p~I~~~~~~g~~----------~~riT~~~~~~~~p~~SpdG~-~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 306 PQIYLYDLEGSQ----------VTRLTFSGGGNSNPVWSPDGD-KIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cceEEECCCCCc----------eeEeeccCCCCcCccCCCCCC-EEEEEeccCCceeeEEeccCCCC
Confidence 6666665543 122222222222567999996 33344433455 6666666654
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.017 Score=46.15 Aligned_cols=236 Identities=14% Similarity=0.058 Sum_probs=131.2
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 99 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 99 (294)
+++....++-.....+...+............-...-..++.++...+.++....+..|.+.|..+......... .
T Consensus 40 ~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v----G 115 (381)
T COG3391 40 PDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV----G 115 (381)
T ss_pred CccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee----c
Confidence 666434444333334555554422211111111133456778884455666666779999999888777776653 2
Q ss_pred CceeEEEEecCCCceEEee-e--cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--
Q 022590 100 NEVLSVDFHPSDIYRIASC-G--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 174 (294)
Q Consensus 100 ~~v~~l~~~~~~~~~l~~~-~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 174 (294)
.....++++| ++..+.++ . .++++.+.|..+... ......-..+ ..++++
T Consensus 116 ~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~-----------------------~~~~~vG~~P-~~~a~~p~ 170 (381)
T COG3391 116 LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV-----------------------TATIPVGNTP-TGVAVDPD 170 (381)
T ss_pred cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE-----------------------EEEEecCCCc-ceEEECCC
Confidence 3678899999 55444444 4 367888888776321 1111111122 444554
Q ss_pred cceEEEe-eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-CCeEEEEeccCCCcee
Q 022590 175 GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-EGKIFVWELQSSPPVL 252 (294)
Q Consensus 175 ~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~ 252 (294)
++.++.. ..++.|.+.|.+...... .... ...........+.+.|++...+++.... ++.+...|..++....
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~----~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG----SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCCcceec-cccc----cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 6644444 478999999976554211 0000 0111123345688999996333332222 2688889988875322
Q ss_pred eeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEecC
Q 022590 253 IARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAI 292 (294)
Q Consensus 253 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~ 292 (294)
..... ... ....+..+|+|+++.+.. ..+.+.+-|..
T Consensus 246 ~~~~~--~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 246 TDLPV--GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred ecccc--ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 21111 111 456689999999888774 34667776654
No 367
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.67 E-value=0.0041 Score=48.95 Aligned_cols=219 Identities=14% Similarity=0.156 Sum_probs=94.0
Q ss_pred CCceEEEEee-cCCeEEEEEcCCc----cccceecc---cC----cceEEEEeCCCCCceEEEee--C----CCcEEEEE
Q 022590 21 DGIPFLVAGG-INGIIRVIDVSNE----KLHKSFVG---HG----DSINEIRTQPLKPSLVVSAS--K----DESVRLWN 82 (294)
Q Consensus 21 ~~~~~l~~~~-~dg~i~iw~~~~~----~~~~~~~~---h~----~~v~~~~~~~~~~~~l~s~~--~----dg~i~vwd 82 (294)
+.+ +|+..+ ..+.|+|.|+.+. +..+.+.. +. ..-..+..-| +++.++|+- . -|-+.+.|
T Consensus 86 ~Rr-~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERR-YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S--EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-
T ss_pred cCC-cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEc
Confidence 344 565555 7789999998743 23333321 11 1222333446 777887752 2 24577888
Q ss_pred cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590 83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162 (294)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (294)
-++.+.........+...--+.+-|.| ..+.++|..... -+.+. .
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~-P~~~~--~------------------------------- 208 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGA-PSMFE--K------------------------------- 208 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEET-TTTEEEE-B----HHHHT--T-------------------------------
T ss_pred CccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCC-hhhcc--c-------------------------------
Confidence 887777777664333344567888888 777777765321 11000 0
Q ss_pred cCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC--CeeEEEEcccCCcceEEEE-cCCCe
Q 022590 163 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIG-NREGK 239 (294)
Q Consensus 163 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~-~~dg~ 239 (294)
-|+..-+..+....++.+||+.+.+ .++.+..... ....+.|..+....+=++| -..+.
T Consensus 209 ---------Gf~~~d~~~~~yG~~l~vWD~~~r~---------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~ 270 (461)
T PF05694_consen 209 ---------GFNPEDLEAGKYGHSLHVWDWSTRK---------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSS 270 (461)
T ss_dssp ------------TTTHHHH-S--EEEEEETTTTE---------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EE
T ss_pred ---------CCChhHhhcccccCeEEEEECCCCc---------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccce
Confidence 0001112223345789999999665 5666665542 2446777776543332222 23344
Q ss_pred EEEEec-cCCCceee--eecccc---------------ccCCCeEEEEEccCCCEEEEec-cCCcEEEEecCCC
Q 022590 240 IFVWEL-QSSPPVLI--ARLSHA---------------QSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAIPT 294 (294)
Q Consensus 240 i~i~d~-~~~~~~~~--~~~~~~---------------~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~ 294 (294)
|..|-- ..++.... ..+... .-..-|+.+.+|.|.++|..++ .+|.|+.||+..+
T Consensus 271 i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 271 IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 444433 43332111 111100 0024589999999999998765 7899999999753
No 368
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.59 E-value=0.00036 Score=36.40 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=29.8
Q ss_pred CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590 53 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 88 (294)
Q Consensus 53 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 88 (294)
...|.+++|+| ..++||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 45799999999 8899999999999999999 5543
No 369
>PHA03098 kelch-like protein; Provisional
Probab=97.59 E-value=0.014 Score=49.03 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=51.1
Q ss_pred CCceEEEEeecCC------eEEEEEcCCccccc--eecccCcceEEEEeCCCCCceEEEeeCC-----CcEEEEEcCCCc
Q 022590 21 DGIPFLVAGGING------IIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGI 87 (294)
Q Consensus 21 ~~~~~l~~~~~dg------~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~ 87 (294)
++. +++.|+.++ .+..||..+.+-.. .+.........+.+ ++.+++.||.+ ..+..||..+++
T Consensus 294 ~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNV-IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCE-EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 344 667776542 46778876654321 11111112222222 56777778765 346778877654
Q ss_pred eEEEeeccCCCCCceeEEEEecCCCceEEeeecC------CcEEEEeccc
Q 022590 88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKE 131 (294)
Q Consensus 88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd~~~ 131 (294)
-.. .... .+...-.+++.. ++.+++.||.+ ..+..||+.+
T Consensus 370 W~~-~~~l-p~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 370 WRE-EPPL-IFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred eee-CCCc-CcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence 322 1111 011111122222 56777777732 3577788765
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0067 Score=48.59 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=90.3
Q ss_pred eEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC------CceEEeeecCCcEEEEecccccccccccee
Q 022590 68 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD------IYRIASCGMDNTVKIWSMKEFWTYVEKSFT 141 (294)
Q Consensus 68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 141 (294)
+|.++.....+.-.|++.|+.+..... +.. |+-+.+.|+. ...-+.|-.|..|.-||.|-....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~---~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~------ 417 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKF---EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN------ 417 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeec---cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc------
Confidence 455666667788889999999999883 433 7777777721 112234556888999999852110
Q ss_pred ecCCCCCCCCceeeeceEEeecC----CCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590 142 WTDLPSKFPTKYVQFPVFIASVH----SNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 216 (294)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (294)
.+.....| .....|.+-. ..++++|+.+|.||+||-- +.+ ....+++-..+
T Consensus 418 ---------------kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri-~~~--------AKTAlPgLG~~ 473 (644)
T KOG2395|consen 418 ---------------KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI-GRR--------AKTALPGLGDA 473 (644)
T ss_pred ---------------eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhh-hhh--------hhhcccccCCc
Confidence 01111111 1122233222 6799999999999999973 321 34456677788
Q ss_pred eeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590 217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQ 246 (294)
Q Consensus 217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 246 (294)
|..+..+.+|+ +++ |..+..+.+.++.
T Consensus 474 I~hVdvtadGK--wil-~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 474 IKHVDVTADGK--WIL-ATCKTYLLLIDTL 500 (644)
T ss_pred eeeEEeeccCc--EEE-EecccEEEEEEEe
Confidence 99999999995 444 3346677777764
No 371
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.55 E-value=0.035 Score=46.03 Aligned_cols=214 Identities=14% Similarity=0.084 Sum_probs=103.5
Q ss_pred cCCeEEEEEcCCccccceecccCcc--------------------e-EEEEeCCCCCceEEEeeCCC-------------
Q 022590 31 INGIIRVIDVSNEKLHKSFVGHGDS--------------------I-NEIRTQPLKPSLVVSASKDE------------- 76 (294)
Q Consensus 31 ~dg~i~iw~~~~~~~~~~~~~h~~~--------------------v-~~~~~~~~~~~~l~s~~~dg------------- 76 (294)
.+|.+..+|..+++.+-.++..... | ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 3678999999999887766432110 1 1233343 345677776554
Q ss_pred -----cEEEEEcCCCceEEEeeccCCCCC----ceeEEEEe---cCCC---ceEEeeecCCcEEEEecccccccccccee
Q 022590 77 -----SVRLWNVQTGICILIFAGAGGHRN----EVLSVDFH---PSDI---YRIASCGMDNTVKIWSMKEFWTYVEKSFT 141 (294)
Q Consensus 77 -----~i~vwd~~~~~~~~~~~~~~~~~~----~v~~l~~~---~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 141 (294)
.|.-+|..+|+..-.++.. .|.. ......+. ..++ ..++.++.+|.+...|.++++........
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~ 330 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV 330 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee
Confidence 7888999999998887531 1210 00001111 0122 25778888999999999986544333221
Q ss_pred ecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE
Q 022590 142 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 221 (294)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 221 (294)
...... .. ..+..-..+ .. ..+......+.....+|.+.-.|..+++................ ..+...-.
T Consensus 331 ~~~~~~--~~----~~vyv~~~~-~~-~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~-g~~~~~~~ 401 (488)
T cd00216 331 EQPMAY--DP----GLVYLGAFH-IP-LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNI-GFPHWGGS 401 (488)
T ss_pred cccccc--CC----ceEEEcccc-cc-ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccccc-CCcccCcc
Confidence 000000 00 000000000 00 00000000011122356677777776653221111000000000 00110001
Q ss_pred EcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590 222 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 257 (294)
Q Consensus 222 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 257 (294)
....+ ..+++++.||.++.+|.++++.+....+.
T Consensus 402 ~~~~g--~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 402 LATAG--NLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred eEecC--CeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 11122 47888899999999999999876666654
No 372
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.52 E-value=0.00051 Score=35.82 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=28.2
Q ss_pred CCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
...|..++|+|...+||.++.||.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999874
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.51 E-value=0.024 Score=43.11 Aligned_cols=163 Identities=11% Similarity=0.146 Sum_probs=91.8
Q ss_pred CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecC
Q 022590 65 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 144 (294)
Q Consensus 65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 144 (294)
.++.|+.|+.+| +.+++........... +...|..+...| +-+.|++-+ |+.+.++++...............
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~----~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL----KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe----ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 467888999999 8899984333333333 344599999998 655555554 599999999984432211100000
Q ss_pred CCCCCCCceeeeceEEeecCCCceeecc----eecceEEEeeCCCeEEEecCCCCCCCCCCCCc-eeeeeeecCCCCeeE
Q 022590 145 LPSKFPTKYVQFPVFIASVHSNYVDCNR----WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA-DILQKYPVPECDIWF 219 (294)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~i~~ 219 (294)
.. ............+...+ ..+...++.....+|.+|....... .. ....++..+ ..+..
T Consensus 79 ~~---------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~-----~f~~~~ke~~lp-~~~~~ 143 (275)
T PF00780_consen 79 KS---------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN-----SFSKLLKEISLP-DPPSS 143 (275)
T ss_pred cc---------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc-----cccceeEEEEcC-CCcEE
Confidence 00 00000000111122222 1234444445556999988876421 11 355666655 56778
Q ss_pred EEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590 220 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 254 (294)
Q Consensus 220 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (294)
++|.. +.++.|..++ ..+.|+.++......
T Consensus 144 i~~~~----~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 144 IAFLG----NKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred EEEeC----CEEEEEeCCc-eEEEecCCCCceEEe
Confidence 88883 3577776544 888999977654443
No 374
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.44 E-value=0.038 Score=43.75 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=36.7
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-c-------c---------CcceEEEEeCCCCCceEEE
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-G-------H---------GDSINEIRTQPLKPSLVVS 71 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~-------h---------~~~v~~~~~~~~~~~~l~s 71 (294)
..+....|+ |+|+ .+|... ++.|.+++..+++..+.-. + - -+.-..+-||| ++++|+.
T Consensus 43 ~~~~~~~~s--P~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~ 117 (353)
T PF00930_consen 43 PKLQDAKWS--PDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAF 117 (353)
T ss_dssp TTBSEEEE---SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEE
T ss_pred cccccceee--cCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEE
Confidence 456777887 9998 666664 5789999987764432211 1 0 11235688999 7776665
Q ss_pred ee
Q 022590 72 AS 73 (294)
Q Consensus 72 ~~ 73 (294)
..
T Consensus 118 ~~ 119 (353)
T PF00930_consen 118 LR 119 (353)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 375
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.36 E-value=0.0019 Score=50.66 Aligned_cols=245 Identities=15% Similarity=0.144 Sum_probs=132.9
Q ss_pred EEEeecCCCceEEEEeecCCeEEEEEcCCcc----ccceecccCcce-EE----EEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590 14 VSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSI-NE----IRTQPLKPSLVVSASKDESVRLWNVQ 84 (294)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~h~~~v-~~----~~~~~~~~~~l~s~~~dg~i~vwd~~ 84 (294)
+.|+-.|.|++.++.|..||.+.+...+-.. +-..+.-...++ .. ..-+| ..++..+.+.+....+++..
T Consensus 118 v~wa~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~-~~~lalA~~~~~qf~~~~~t 196 (733)
T COG4590 118 VLWAQTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHP-LQQLALALTAEAQFATYDNT 196 (733)
T ss_pred cccccCCCCCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccch-HHHhhhccchhhHHHHhhhh
Confidence 4566667888899999999999998743111 111111000000 00 00111 11233334444444444432
Q ss_pred C------------CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCc
Q 022590 85 T------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 152 (294)
Q Consensus 85 ~------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (294)
. ++.+..+. .....+..+-..| +++.+..-+. ..+.++++.+.....++..+..+.
T Consensus 197 ~~~~~L~g~~t~q~e~i~~L~---~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg------- 264 (733)
T COG4590 197 QQIQILRGDRTTQQEIIRLLS---VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG------- 264 (733)
T ss_pred hhhhhhhcccCchhhhhhhcC---CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCC-------
Confidence 1 12222222 3556788888999 7777766554 688888887632222111110000
Q ss_pred eeeeceEEeecCCCcee-ecc-ee-cceEEEeeCCCeEEEe-cCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCc
Q 022590 153 YVQFPVFIASVHSNYVD-CNR-WL-GDFILSKSVDNEIVLW-EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 228 (294)
Q Consensus 153 ~~~~~~~~~~~~~~~i~-~~~-~~-~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (294)
.....|+ .+. .. +..+.++..||.|.-| |.+..... +...++.++....++.. ..|+...
T Consensus 265 ----------~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p----~l~h~R~f~l~pa~~~~--l~pe~~r 328 (733)
T COG4590 265 ----------DSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQP----HLNHIRNFKLAPAEVQF--LLPETNR 328 (733)
T ss_pred ----------chHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCC----cceeeeccccCccccee--ecccccc
Confidence 0001111 111 11 5678888889888665 66654321 22234444443333433 3444444
Q ss_pred ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
+-+++-+..|.+.++.....+........ ..+.-+++||.+.+|++- ..|.++++.+++
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~lL~~~~~-----~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~N 387 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKLLLFERAY-----QAPQLVAMSPNQAYLLSE-DQGKIRLAQLEN 387 (733)
T ss_pred ceEEEEcCCCceeeeecccCcceehhhhh-----cCcceeeeCcccchheee-cCCceEEEEecC
Confidence 67888889999999887776654444333 245678999999999876 456788887764
No 376
>PHA03098 kelch-like protein; Provisional
Probab=97.36 E-value=0.04 Score=46.41 Aligned_cols=189 Identities=11% Similarity=0.058 Sum_probs=87.8
Q ss_pred CCceEEEeeCCC------cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-----cEEEEeccccc
Q 022590 65 KPSLVVSASKDE------SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFW 133 (294)
Q Consensus 65 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~ 133 (294)
++.+++.|+.++ .+..||..+.+-.. +.......... +++.. ++.+++.||.++ .+..||..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNP-GVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccc-eEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 456777776543 46678877665432 22111111112 22222 667788887653 35566665421
Q ss_pred cccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCC------CeEEEecCCCCCCCCCCCCceee
Q 022590 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD------NEIVLWEPKMKEQSPGEGTADIL 207 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~ 207 (294)
|...+. +.............+...+.|+.+ ..+..||+.+.+-. .+
T Consensus 370 --------W~~~~~-------------lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~-------~~ 421 (534)
T PHA03098 370 --------WREEPP-------------LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS-------KG 421 (534)
T ss_pred --------eeeCCC-------------cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee-------ec
Confidence 111000 000001111122336666666632 45788898765321 11
Q ss_pred eeeecCCCCeeEEEEcccCCcceEEEEcCC--------CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590 208 QKYPVPECDIWFIKFSCDFHYNAAAIGNRE--------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS 279 (294)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 279 (294)
...+...... .+...++ .+.+.|+.+ ..+.+||..+.+.......... ......+. .+++.++.
T Consensus 422 ~~~p~~r~~~--~~~~~~~--~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~--~~~~iyv~ 493 (534)
T PHA03098 422 SPLPISHYGG--CAIYHDG--KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCI--FNNKIYVV 493 (534)
T ss_pred CCCCccccCc--eEEEECC--EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEE--ECCEEEEE
Confidence 1111111111 1222333 355555532 2388899888764433332211 11112222 26777777
Q ss_pred eccC-----CcEEEEecCC
Q 022590 280 CCED-----GAIWRWDAIP 293 (294)
Q Consensus 280 ~~~d-----g~i~vw~~~~ 293 (294)
|+.+ ..+.+||.++
T Consensus 494 GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred cCCcCCcccceeEEEeCCC
Confidence 7754 4678887654
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.35 E-value=0.048 Score=46.00 Aligned_cols=188 Identities=15% Similarity=0.135 Sum_probs=101.9
Q ss_pred CCceEEEeeCCC------cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC------CcEEEEecccc
Q 022590 65 KPSLVVSASKDE------SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEF 132 (294)
Q Consensus 65 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd~~~~ 132 (294)
.+.+++.|+.++ .+..+|..+++....... .....-.+++.. ++.++++||.| .++..||.+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC--CcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 456778888774 577888887754433221 133344566665 56889999998 34566776663
Q ss_pred ccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCe-----EEEecCCCCCCCCCCCCceee
Q 022590 133 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNE-----IVLWEPKMKEQSPGEGTADIL 207 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~~~~~~ 207 (294)
. |. ....+.............|.+.++|+.||. +-.||..+.+-. ..
T Consensus 360 ~--------W~-------------~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-------~v 411 (571)
T KOG4441|consen 360 Q--------WT-------------PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-------PV 411 (571)
T ss_pred c--------ee-------------ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccc-------cc
Confidence 2 11 111112222222233334778888888864 777888766421 11
Q ss_pred eeeecCCCCeeEE-EEcccCCcceEEEEcCC------CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590 208 QKYPVPECDIWFI-KFSCDFHYNAAAIGNRE------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 280 (294)
Q Consensus 208 ~~~~~~~~~i~~~-~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 280 (294)
..... ..... ...-++ .+.++|+.+ ..+..||..+++......... .+.... ++ .-++.+.+.|
T Consensus 412 a~m~~---~r~~~gv~~~~g--~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~~~g-~a-~~~~~iYvvG 482 (571)
T KOG4441|consen 412 APMLT---RRSGHGVAVLGG--KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRSGFG-VA-VLNGKIYVVG 482 (571)
T ss_pred CCCCc---ceeeeEEEEECC--EEEEEcCcCCCccccceEEEEcCCCCceeecCCccc--ccccce-EE-EECCEEEEEC
Confidence 11111 11111 222233 456666643 457788988887555544441 112122 22 2366788888
Q ss_pred ccCCc-----EEEEecCC
Q 022590 281 CEDGA-----IWRWDAIP 293 (294)
Q Consensus 281 ~~dg~-----i~vw~~~~ 293 (294)
|.|+. |..||.++
T Consensus 483 G~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 483 GFDGTSALSSVERYDPET 500 (571)
T ss_pred CccCCCccceEEEEcCCC
Confidence 87773 55566543
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0017 Score=56.16 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=76.4
Q ss_pred eeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590 168 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 247 (294)
Q Consensus 168 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 247 (294)
+.+.+.-+..++.|+..|.+...|++..-. ....-.....+|++++|+.+| ..++.|-.+|.|.+||...
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~--------~~~~ne~v~~~Vtsvafn~dg--~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLG--------PLHQNERVQGPVTSVAFNQDG--SLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccc--------hhhcCCccCCcceeeEecCCC--ceeccccCCCcEEEEEccC
Confidence 334444466888999999999999875311 122223345789999999999 6899999999999999999
Q ss_pred CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 248 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
++...........+ ..|..+.+..++..++++...|. +|++
T Consensus 162 ~k~l~~i~e~~ap~-t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 AKILKVITEHGAPV-TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcceeeeeecCCcc-ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 87544444332222 33444555566668888888886 5654
No 379
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.056 Score=43.68 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=69.8
Q ss_pred cCceeEEEEEeecCCCceEEEEeec--C-CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE--
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGI--N-GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW-- 81 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~--d-g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw-- 81 (294)
....+..-+|+ |+++.+....-. . ..+.++++++++....+. ..+.-..-+|+|++..++++...||...||
T Consensus 191 ~~~~~~~p~ws--~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 191 SGSLILTPAWS--PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cCcceeccccC--cCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 34455666777 788733333222 2 459999999887655554 344456678999555556666777775554
Q ss_pred EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
|+..+.. ..+.. -.+.-..=.|+|++..++++.+..|.-.+|-...
T Consensus 268 dl~~~~~-~~Lt~---~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~ 313 (425)
T COG0823 268 DLDGKNL-PRLTN---GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL 313 (425)
T ss_pred cCCCCcc-eeccc---CCccccCccCCCCCCEEEEEeCCCCCcceEEECC
Confidence 6655553 33442 2222235678995555556666677666665543
No 380
>PHA02790 Kelch-like protein; Provisional
Probab=97.27 E-value=0.077 Score=43.93 Aligned_cols=186 Identities=11% Similarity=-0.022 Sum_probs=88.2
Q ss_pred CCceEEEeeCCC-----cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC--cEEEEeccccccccc
Q 022590 65 KPSLVVSASKDE-----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEFWTYVE 137 (294)
Q Consensus 65 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~ 137 (294)
++.+++.|+.++ ++..||..+++.... ..+...... .+++. - ++.+.+.||.++ .+..||..+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~-~~m~~~r~~-~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~---- 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPI-PPMNSPRLY-ASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAA---- 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEEC-CCCCchhhc-ceEEE-E-CCEEEEECCcCCCCceEEEECCCCe----
Confidence 456777777643 466788776553322 211111111 12222 2 677788887643 46666654321
Q ss_pred cceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeeecCC
Q 022590 138 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPE 214 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 214 (294)
|...+ .+.........+..++.+.+.|+.++ .+..||+++..- ......+.+.
T Consensus 343 ----W~~~~-------------~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W-------~~~~~m~~~r 398 (480)
T PHA02790 343 ----WVNMP-------------SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW-------QFGPSTYYPH 398 (480)
T ss_pred ----EEECC-------------CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE-------EeCCCCCCcc
Confidence 11100 11111111222333466777777543 467788775431 1111111111
Q ss_pred CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC-----CcEEEE
Q 022590 215 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRW 289 (294)
Q Consensus 215 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vw 289 (294)
... .+...++ .+.+.| |.+.+||.++++......+.. .......+ .-+++..+.||.+ ..+..|
T Consensus 399 ~~~--~~~~~~~--~IYv~G---G~~e~ydp~~~~W~~~~~m~~--~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Y 467 (480)
T PHA02790 399 YKS--CALVFGR--RLFLVG---RNAEFYCESSNTWTLIDDPIY--PRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVY 467 (480)
T ss_pred ccc--eEEEECC--EEEEEC---CceEEecCCCCcEeEcCCCCC--CccccEEE--EECCEEEEECCcCCCcccceEEEE
Confidence 111 1223344 345555 457889998876544443331 11222222 2367788888754 357788
Q ss_pred ecCC
Q 022590 290 DAIP 293 (294)
Q Consensus 290 ~~~~ 293 (294)
|.++
T Consensus 468 d~~~ 471 (480)
T PHA02790 468 NNRT 471 (480)
T ss_pred ECCC
Confidence 7654
No 381
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.26 E-value=0.054 Score=41.62 Aligned_cols=204 Identities=13% Similarity=0.058 Sum_probs=102.0
Q ss_pred CCCceEEEEee--cCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC-CCceEEEeec-c
Q 022590 20 VDGIPFLVAGG--INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAG-A 95 (294)
Q Consensus 20 ~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~-~ 95 (294)
.||+ +++... ---.|.|-|+..++.+.++... + |.-.-|..++-+.+-+.||.+.-..+. .|+....... +
T Consensus 104 ~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F 178 (342)
T PF06433_consen 104 ADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF 178 (342)
T ss_dssp TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred cCCc-EEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence 5665 444432 2345677777777766665422 1 111223234568888999999988887 4554432211 1
Q ss_pred CCCCCcee-EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee
Q 022590 96 GGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 174 (294)
Q Consensus 96 ~~~~~~v~-~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 174 (294)
..-..++. .=++.. .+..++--+.+|.|+--|+.............-..... ....-++.-.-++++
T Consensus 179 ~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~-----------~~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK-----------ADGWRPGGWQLIAYH 246 (342)
T ss_dssp STTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH-----------HTTEEE-SSS-EEEE
T ss_pred CCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc-----------ccCcCCcceeeeeec
Confidence 12222222 333443 34445556788999988887743222111110000000 000011111122222
Q ss_pred --cceEEEeeC--------CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590 175 --GDFILSKSV--------DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242 (294)
Q Consensus 175 --~~~l~~~~~--------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 242 (294)
.+.|++.-. |+ .|-++|+.+.+ .+..++.. .++.++..+.+.+..+++....++.+.+
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k---------rv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK---------RVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE---------EEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCe---------EEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 223322211 22 36667777655 45555542 3577899999987544455567899999
Q ss_pred EeccCCCc
Q 022590 243 WELQSSPP 250 (294)
Q Consensus 243 ~d~~~~~~ 250 (294)
||..+++.
T Consensus 317 ~D~~tGk~ 324 (342)
T PF06433_consen 317 YDAATGKL 324 (342)
T ss_dssp EETTT--E
T ss_pred EeCcCCcE
Confidence 99999863
No 382
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.08 Score=42.39 Aligned_cols=194 Identities=14% Similarity=0.057 Sum_probs=116.4
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC---CCcEEEEEcCCCceEEEeeccC
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQTGICILIFAGAG 96 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~ 96 (294)
+.+.+..+....++.|.+.|..+.+......--. ....++++| ++..+..+.. ++++.+.|..+++.+.....
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-- 158 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-- 158 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEec--
Confidence 6676466666667899999977776666554322 567899999 5555554443 78999999999988887542
Q ss_pred CCCCceeEEEEecCCCc-eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC-Cceeeccee
Q 022590 97 GHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL 174 (294)
Q Consensus 97 ~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 174 (294)
-..+ ..+++.| ++. .+++-..++.|.+.|........ . .......... .....+..+
T Consensus 159 -G~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-----------------~~~~~~~~~~~P~~i~v~~~ 217 (381)
T COG3391 159 -GNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-G-----------------SVGSLVGVGTGPAGIAVDPD 217 (381)
T ss_pred -CCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-c-----------------ccccccccCCCCceEEECCC
Confidence 2233 8999999 655 45555578999999976621110 0 0000001111 112222333
Q ss_pred cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeee-eecCCCCeeEEEEcccCCcceEEEE-cCCCeEEEEeccCCC
Q 022590 175 GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSP 249 (294)
Q Consensus 175 ~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~ 249 (294)
++.+.+.... +.+...|..++.. ... ..........+...|+++ .+.+. ...+.+.+.|..+..
T Consensus 218 g~~~yV~~~~~~~~~v~~id~~~~~v---------~~~~~~~~~~~~~~v~~~p~g~--~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 218 GNRVYVANDGSGSNNVLKIDTATGNV---------TATDLPVGSGAPRGVAVDPAGK--AAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCEEEEEeccCCCceEEEEeCCCceE---------EEeccccccCCCCceeECCCCC--EEEEEecCCCeEEEEeCCCCc
Confidence 5544444333 5888888876542 111 111111345678999995 44444 445889999988765
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.18 E-value=0.054 Score=40.11 Aligned_cols=195 Identities=9% Similarity=-0.004 Sum_probs=108.4
Q ss_pred ccceecccCcc-eEEEEeCCCCCceEEEeeCCC--cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC
Q 022590 45 LHKSFVGHGDS-INEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121 (294)
Q Consensus 45 ~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d 121 (294)
.+.++...... ...+.|.. ++.++-+.+.-| .|+.+|+.+++....... ...----.++.. ++.+..-.-.+
T Consensus 35 vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~FgEGit~~--~d~l~qLTWk~ 109 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRYFGEGITIL--GDKLYQLTWKE 109 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT--EEEEEEE--TTEEEEEESSS
T ss_pred EEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--CccccceeEEEE--CCEEEEEEecC
Confidence 34455422233 45677855 678888887766 689999999998776653 122223445555 44555556678
Q ss_pred CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCC
Q 022590 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGE 201 (294)
Q Consensus 122 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 201 (294)
+...+||..+.+. +..+. .+..=..++.+++.|+.+.....|+++|..+.+.
T Consensus 110 ~~~f~yd~~tl~~-----------------------~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~---- 161 (264)
T PF05096_consen 110 GTGFVYDPNTLKK-----------------------IGTFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKE---- 161 (264)
T ss_dssp SEEEEEETTTTEE-----------------------EEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SE----
T ss_pred CeEEEEccccceE-----------------------EEEEe-cCCcceEEEcCCCEEEEECCccceEEECCcccce----
Confidence 9999999987432 22221 2234455566788888888888999999886542
Q ss_pred CCceeeeeeecC-----CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc-----------ccccCCCe
Q 022590 202 GTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-----------HAQSKSPI 265 (294)
Q Consensus 202 ~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~~~~~v 265 (294)
...+... -..++-+.+. +| .+.|---....|...|..+++......+. ......-.
T Consensus 162 -----~~~i~V~~~g~pv~~LNELE~i-~G--~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 162 -----VRTIQVTDNGRPVSNLNELEYI-NG--KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp -----EEEEE-EETTEE---EEEEEEE-TT--EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred -----EEEEEEEECCEECCCcEeEEEE-cC--EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 2222211 1234555554 33 34455555666777777777643333222 00113568
Q ss_pred EEEEEccCCCEE-EEe
Q 022590 266 RQTAMSYDGSTI-LSC 280 (294)
Q Consensus 266 ~~~~~s~~~~~l-~s~ 280 (294)
+.+|+.|..+.| +||
T Consensus 234 NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EeEeEeCCCCEEEEEe
Confidence 999999876554 555
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.18 E-value=0.12 Score=43.86 Aligned_cols=154 Identities=12% Similarity=0.034 Sum_probs=77.9
Q ss_pred eeEEEEEeecCCCceEEEEee------cCC--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC------
Q 022590 10 SFYTVSWACNVDGIPFLVAGG------ING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD------ 75 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~------~dg--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------ 75 (294)
.+...+.+ |+|+ .++... .|+ .|.+++. .+.. ..+.. ....+.-.|+| ++..+++....
T Consensus 351 ~vsspaiS--pdG~-~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 351 NITSAALS--RSGR-QVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred CcccceEC--CCCC-EEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEE
Confidence 45566665 8998 554443 243 4555554 2222 33321 22478889999 76666665432
Q ss_pred ------CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCC
Q 022590 76 ------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 149 (294)
Q Consensus 76 ------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 149 (294)
+.+.+.++..++... .....|..+.|+| ++..++... +|.|.+=-+......
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G-------------- 481 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS------RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDG-------------- 481 (591)
T ss_pred eccCCCceEEEEeccCchhhh------ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCC--------------
Confidence 222222333222211 1356799999999 777666655 466666333221000
Q ss_pred CCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCC
Q 022590 150 PTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPK 193 (294)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~ 193 (294)
......+......-...+..+.|. +..|+++..++.-.+|.+.
T Consensus 482 -~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 482 -QYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred -ceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 000111222222233345778886 4446666665555555543
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.012 Score=47.25 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=90.1
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCC------CceEEEeeCCCcEEEEEcCCCce--EEEee--c
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK------PSLVVSASKDESVRLWNVQTGIC--ILIFA--G 94 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~--~~~~~--~ 94 (294)
+|.++.....++-.|++.|+.+..++.|.. |+-+.+.|+. ...-+.|-.|..|.-||++-... +...+ .
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455566666788889999999999987766 7777777731 11234466778899999874322 11111 1
Q ss_pred cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee
Q 022590 95 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 174 (294)
Q Consensus 95 ~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 174 (294)
+ .-.....|.+-. +..++++|+.+|.|++||--. ......+.+-..+|..+...
T Consensus 427 y-~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~-----------------------~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 427 Y-STKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIG-----------------------RRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred c-ccccccceeeec--CCceEEEeecCCcEEeehhhh-----------------------hhhhhcccccCCceeeEEee
Confidence 0 122344555554 455699999999999999743 23344556666777766554
Q ss_pred --cceEEEeeCCCeEEEecCC
Q 022590 175 --GDFILSKSVDNEIVLWEPK 193 (294)
Q Consensus 175 --~~~l~~~~~d~~i~iwd~~ 193 (294)
|.+++.. .+..+.+-++.
T Consensus 481 adGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 481 ADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccCcEEEEe-cccEEEEEEEe
Confidence 7776654 45666666654
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.033 Score=41.27 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=40.6
Q ss_pred ecCCCceEEEEeecC-----CeEEEEEcCCc-cccceecccCcceEEEEeCCCCCceEEEee
Q 022590 18 CNVDGIPFLVAGGIN-----GIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73 (294)
Q Consensus 18 ~~~~~~~~l~~~~~d-----g~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 73 (294)
|||||. +|.+.-.| |.|-|||...+ +.+..+..|.-.-..+.|.+ |++.++.+.
T Consensus 121 fs~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan 180 (366)
T COG3490 121 FSPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN 180 (366)
T ss_pred cCCCCc-EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeC
Confidence 469998 66665443 78999998754 45667788887888899999 888777653
No 387
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=97.14 E-value=0.071 Score=45.40 Aligned_cols=174 Identities=7% Similarity=0.070 Sum_probs=94.5
Q ss_pred CceEEeeecCCcEEEEecccccccccc--ceeecCCCCCCCCceeeeceEEeecCCCceeeccee----cceEEEeeCCC
Q 022590 112 IYRIASCGMDNTVKIWSMKEFWTYVEK--SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDN 185 (294)
Q Consensus 112 ~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~ 185 (294)
.++++++. .+.|.||+++........ .......+........ ...... .+..|+-+... .+.|+.+..||
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~--~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG 124 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDR--LISTWP-FPHTINFIKVGDLGGEEVLLLCTDDG 124 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccc--cccCCC-CCceeeEEEecccCCeeEEEEEecCC
Confidence 44555544 689999998874432211 1111111111111000 000111 22334444332 66899999999
Q ss_pred eEEEecCCCCC----CC-------CCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590 186 EIVLWEPKMKE----QS-------PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 254 (294)
Q Consensus 186 ~i~iwd~~~~~----~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (294)
.|.+|.++.-- .. .......+...+.. ....+++++......+++|+++....|.||-..........
T Consensus 125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~ 203 (717)
T PF08728_consen 125 DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH 203 (717)
T ss_pred eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence 99999663210 00 00001112222222 34688888883233379999999999999877653211111
Q ss_pred eccccccCCCeEEEEEccCC---C---EEEEeccCCcEEEEec
Q 022590 255 RLSHAQSKSPIRQTAMSYDG---S---TILSCCEDGAIWRWDA 291 (294)
Q Consensus 255 ~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~vw~~ 291 (294)
.- ...+...|.+++|-++. . .|++++-.|.+.+|++
T Consensus 204 ~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 204 VP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11 11355678899997653 2 7888999999999887
No 388
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.14 E-value=0.075 Score=40.90 Aligned_cols=237 Identities=11% Similarity=0.100 Sum_probs=127.2
Q ss_pred ecCCCceEEEEee----------cCCeEEEEEcCCccccceecccCc-------ceEEEEeCCCCCceEEEe--eCCCcE
Q 022590 18 CNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGHGD-------SINEIRTQPLKPSLVVSA--SKDESV 78 (294)
Q Consensus 18 ~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~--~~dg~i 78 (294)
.+|+|+ .+++++ ..-.|.+||..+..+...+.-..+ ....++++. ++++++.. +--..|
T Consensus 43 ~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 43 LSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTPATSV 120 (342)
T ss_dssp E-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T-TSSEEEEEEESSSEEE
T ss_pred ECCCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc-CCcEEEEEccCCCCeE
Confidence 358998 666543 234699999999876654432211 123356777 66666654 334568
Q ss_pred EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590 79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158 (294)
Q Consensus 79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
.|-|+..++.+..+.. .+ +..+ .|..+.-|.+-|.||.+.-..+.......... .
T Consensus 121 tVVDl~~~kvv~ei~~----PG-C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~------------------t 175 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDT----PG-CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS------------------T 175 (342)
T ss_dssp EEEETTTTEEEEEEEG----TS-EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEE------------------E
T ss_pred EEEECCCCceeeeecC----CC-EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEee------------------c
Confidence 8888888888887763 22 2222 34344568888899999999988532221110 0
Q ss_pred EEeecCCCcee-eccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec----------CCCCeeEEEEccc
Q 022590 159 FIASVHSNYVD-CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----------PECDIWFIKFSCD 225 (294)
Q Consensus 159 ~~~~~~~~~i~-~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~ 225 (294)
..+..-..++. .-.+. +..++-.+.+|.|+--|+..... .....+.. ..+...-+++++.
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-------EEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-------cccCcccccCccccccCcCCcceeeeeeccc
Confidence 01111111111 11111 34444457788888877765531 11111111 1123444667665
Q ss_pred CCcceEEE-Ec-----CCC--eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEe-ccCCcEEEEecCC
Q 022590 226 FHYNAAAI-GN-----REG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSC-CEDGAIWRWDAIP 293 (294)
Q Consensus 226 ~~~~~l~~-~~-----~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~i~vw~~~~ 293 (294)
.+..+++. .+ .++ .|.++|+.+.+ .+.+++.. .++.+|+.+.+.+ +|++. ..++.+.+||..+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k--rv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK--RVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTE--EEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCe--EEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 53222221 11 122 35666666665 44444322 3588999998765 66554 5689999999865
No 389
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.10 E-value=0.11 Score=42.17 Aligned_cols=245 Identities=12% Similarity=0.095 Sum_probs=114.4
Q ss_pred EEeecCCCceEEEEe-ecCC----eEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCC----------CcE
Q 022590 15 SWACNVDGIPFLVAG-GING----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKD----------ESV 78 (294)
Q Consensus 15 ~~~~~~~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~d----------g~i 78 (294)
.+.++|+|+ ++|.+ +..| .++++|+++++.+...-.. .....+.|.+ +++.| .+...+ ..|
T Consensus 128 ~~~~Spdg~-~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 128 GFSVSPDGK-RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEETTTSS-EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeECCCCC-EEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence 677889999 55544 4545 4999999999765432111 1223499999 55544 444222 237
Q ss_pred EEEEcCCCceE--EEeeccCCCCCc-eeEEEEecCCCceEEee-ecC---CcEEEEeccccccccccceeecCCCCCCCC
Q 022590 79 RLWNVQTGICI--LIFAGAGGHRNE-VLSVDFHPSDIYRIASC-GMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 151 (294)
Q Consensus 79 ~vwd~~~~~~~--~~~~~~~~~~~~-v~~l~~~~~~~~~l~~~-~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
..|.+.+...- ..+.. ..... ...+..++ ++.+++.. ... ..+.+.|+......
T Consensus 205 ~~~~~gt~~~~d~lvfe~--~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~---------------- 265 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEE--PDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSP---------------- 265 (414)
T ss_dssp EEEETTS-GGG-EEEEC---TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTS----------------
T ss_pred EEEECCCChHhCeeEEee--cCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCC----------------
Confidence 77887766432 34442 12222 56788888 66665543 322 34677777652100
Q ss_pred ceeeeceEEeecCCCceeecceecceEEEee----CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC
Q 022590 152 KYVQFPVFIASVHSNYVDCNRWLGDFILSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 227 (294)
Q Consensus 152 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (294)
...+........+....+...++.+..-+ ..+.|.-.++..... ......+..+...+.-..+...++
T Consensus 266 --~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~------~~~~~~l~~~~~~~~l~~~~~~~~ 337 (414)
T PF02897_consen 266 --DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSP------AEWWTVLIPEDEDVSLEDVSLFKD 337 (414)
T ss_dssp --S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSG------GGEEEEEE--SSSEEEEEEEEETT
T ss_pred --cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccc------ccceeEEcCCCCceeEEEEEEECC
Confidence 00111111212222223333344333323 235676677765531 011223333333333333444443
Q ss_pred cceEEEEcCCC--eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE--ec--cCCcEEEEecCC
Q 022590 228 YNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS--CC--EDGAIWRWDAIP 293 (294)
Q Consensus 228 ~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~--~dg~i~vw~~~~ 293 (294)
.+++....++ .|+++++..+.......+. ..+.|..+...++++.+.. .| .=+.++.||+.+
T Consensus 338 -~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p---~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 338 -YLVLSYRENGSSRLRVYDLDDGKESREIPLP---EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp -EEEEEEEETTEEEEEEEETT-TEEEEEEESS---SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred -EEEEEEEECCccEEEEEECCCCcEEeeecCC---cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 3455544444 4778888722222222222 1244566666666554332 22 224566666654
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.074 Score=39.73 Aligned_cols=169 Identities=9% Similarity=0.043 Sum_probs=101.7
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc-CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 86 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 86 (294)
...|.++.|+ |+.+ .|++......-.|+=..+|+.++++.-. -...-.|.+.. ++++.++--.++.+.++.+...
T Consensus 85 ~~nvS~LTyn--p~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 85 TANVSSLTYN--PDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccceeeC--CCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3458999998 8888 5666666666666666778888776421 12235577777 7777777778888888877655
Q ss_pred ceEEEee-------ccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590 87 ICILIFA-------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 159 (294)
Q Consensus 87 ~~~~~~~-------~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (294)
.....+. .....+...-.++|.| ..+.|..+-.-.-+.+|.+............ ..+..
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~-------------~~~~~ 226 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHAS-------------LDPTA 226 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccc-------------cCccc
Confidence 3322221 1111255678999999 6666777777777888877752211111000 00111
Q ss_pred EeecCCCceeeccee---cceEEEeeCCCeEEEecCCC
Q 022590 160 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKM 194 (294)
Q Consensus 160 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~ 194 (294)
.....-..|.++.|+ +.+++-+.+++.+.-.|...
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 111122345666776 56677777777777777654
No 391
>PHA02790 Kelch-like protein; Provisional
Probab=97.06 E-value=0.1 Score=43.20 Aligned_cols=100 Identities=10% Similarity=0.002 Sum_probs=50.4
Q ss_pred EEEEeecCC-----eEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCC--CcEEEEEcCCCceEEEeecc
Q 022590 25 FLVAGGING-----IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD--ESVRLWNVQTGICILIFAGA 95 (294)
Q Consensus 25 ~l~~~~~dg-----~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~ 95 (294)
++++|+.++ .+..||..+++-. ..+.........+. - ++.+.+.|+.+ ..+..||..+++-.. ...+
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l 349 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSL 349 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEE-CCCC
Confidence 667777543 4667887665422 22221111122222 2 56777888764 357778876554322 2211
Q ss_pred CCCCCceeEEEEecCCCceEEeeecCC---cEEEEeccc
Q 022590 96 GGHRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKE 131 (294)
Q Consensus 96 ~~~~~~v~~l~~~~~~~~~l~~~~~dg---~i~~wd~~~ 131 (294)
. ....-.+++.. ++.+.+.||.++ .+..||.++
T Consensus 350 ~-~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 350 L-KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred C-CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCC
Confidence 1 11111122222 677788887654 355677665
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.03 E-value=0.094 Score=40.13 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=72.1
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE-cCCC
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN-VQTG 86 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~ 86 (294)
.+.+..+.-+ ++|+ +++++..-....-||.....-...-..-...|..|.|.| ++.+.+.+ ..|.|+.=+ ....
T Consensus 144 ~gs~~~~~r~--~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 144 SGSINDITRS--SDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ---EEEEEE---TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cceeEeEEEC--CCCc-EEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence 3556666554 8998 787776666666777432211111222457899999999 66665544 888888876 2222
Q ss_pred ceEEE-eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 87 ICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 87 ~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
+.... +.....-.-.+..++|.+ ++...++|+ .|.+.+ ....++.- ........-+
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l~~-S~DgGktW--------------------~~~~~~~~~~ 275 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTLLV-STDGGKTW--------------------QKDRVGENVP 275 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-EEE-ESSTTSS---------------------EE-GGGTTSS
T ss_pred cccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccEEE-eCCCCccc--------------------eECccccCCC
Confidence 22221 111111223489999998 667666655 454443 22221100 0000111223
Q ss_pred Cceeeccee-cceEEEeeCCCeEEEe
Q 022590 166 NYVDCNRWL-GDFILSKSVDNEIVLW 190 (294)
Q Consensus 166 ~~i~~~~~~-~~~l~~~~~d~~i~iw 190 (294)
..+..+.|. ++.-++.+.+|.|.-|
T Consensus 276 ~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 276 SNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp S---EEEEEETTEEEEE-STTEEEEE
T ss_pred CceEEEEEcCCCceEEECCCcEEEEe
Confidence 445666664 5566666778877655
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.86 E-value=0.0085 Score=30.29 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=27.9
Q ss_pred cceEEEEeCCCCC--ceEEEeeCCCcEEEEEcCCC
Q 022590 54 DSINEIRTQPLKP--SLVVSASKDESVRLWNVQTG 86 (294)
Q Consensus 54 ~~v~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~ 86 (294)
++|.++.|+|..+ ++|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998555 68999888999999999853
No 394
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.73 E-value=0.0085 Score=30.27 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=25.9
Q ss_pred CCeEEEEEccCC---CEEEEeccCCcEEEEecCC
Q 022590 263 SPIRQTAMSYDG---STILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 263 ~~v~~~~~s~~~---~~l~s~~~dg~i~vw~~~~ 293 (294)
+.|+++.|+|+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358999999854 4888888889999999984
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.71 E-value=0.12 Score=42.47 Aligned_cols=121 Identities=9% Similarity=0.086 Sum_probs=70.0
Q ss_pred Cceeeccee------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC-CCCeeEEEEcccCCcceEEEEcCCC
Q 022590 166 NYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNREG 238 (294)
Q Consensus 166 ~~i~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~dg 238 (294)
..|..+.|. -..+++.-....|.+|.+................++..+ .--...+.|+|.. .+|++-....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT~~d 134 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLTARD 134 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEecCc
Confidence 456677774 124444466788999998633221111111111111110 0112357899988 4666665555
Q ss_pred eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEec
Q 022590 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDA 291 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~ 291 (294)
.-.++++..........+. ..+.|.|.+|.+||+.|+.+- ..=.-++||-
T Consensus 135 vSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeEeeeeeeCCceEEEecc---CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 5567777766554555553 346799999999999887763 3334678874
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.55 E-value=0.053 Score=43.35 Aligned_cols=88 Identities=16% Similarity=0.233 Sum_probs=61.9
Q ss_pred ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEE-EEeCCCCC----------------
Q 022590 4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE-IRTQPLKP---------------- 66 (294)
Q Consensus 4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~-~~~~~~~~---------------- 66 (294)
+.+....+.+++.+ |+++ +.|+...=|.|.++|+.++..++.+++-.++=.. +.......
T Consensus 303 l~D~~R~~~~i~~s--P~~~-laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 303 LPDSKREGESICLS--PSGR-LAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eccCCceEEEEEEC--CCCC-EEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 44666778888887 8888 8888777799999999999998888876543111 11111011
Q ss_pred c-eEEEeeCCCcEEEEEcCCCceEEEeec
Q 022590 67 S-LVVSASKDESVRLWNVQTGICILIFAG 94 (294)
Q Consensus 67 ~-~l~s~~~dg~i~vwd~~~~~~~~~~~~ 94 (294)
. +++-+-.-|.|.||.+++|..+..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1 344566789999999999988877763
No 397
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.24 Score=37.20 Aligned_cols=146 Identities=12% Similarity=0.149 Sum_probs=92.8
Q ss_pred CCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecce
Q 022590 98 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDF 177 (294)
Q Consensus 98 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 177 (294)
-.+-+..+.++. ++...+..+.-+++.|+.+..... ......-.+.-.++..+|++
T Consensus 85 ~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~---------------------~~~~lnt~gyaygv~vsGn~ 140 (370)
T COG5276 85 ARDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPT---------------------LIGFLNTDGYAYGVYVSGNY 140 (370)
T ss_pred hhhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcc---------------------eeccccCCceEEEEEecCCE
Confidence 455677888863 566677777889999999842111 11111112444566667999
Q ss_pred EEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc-eeeeec
Q 022590 178 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-VLIARL 256 (294)
Q Consensus 178 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~ 256 (294)
..++..|.-+.+.|+.+... ..+...+.........++.|- ++...+..|+-+.+-|+..... .+....
T Consensus 141 aYVadlddgfLivdvsdpss------P~lagrya~~~~d~~~v~ISG----n~AYvA~~d~GL~ivDVSnp~sPvli~~~ 210 (370)
T COG5276 141 AYVADLDDGFLIVDVSDPSS------PQLAGRYALPGGDTHDVAISG----NYAYVAWRDGGLTIVDVSNPHSPVLIGSY 210 (370)
T ss_pred EEEeeccCcEEEEECCCCCC------ceeeeeeccCCCCceeEEEec----CeEEEEEeCCCeEEEEccCCCCCeEEEEE
Confidence 99999787888999987763 334455555555445566653 3566677888899999987643 222222
Q ss_pred cccccCCCeEEEEEccCCCEEEEe
Q 022590 257 SHAQSKSPIRQTAMSYDGSTILSC 280 (294)
Q Consensus 257 ~~~~~~~~v~~~~~s~~~~~l~s~ 280 (294)
.....+.++..+++.-+++..
T Consensus 211 ---n~g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 211 ---NTGPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred ---ecCCceEEEEecCCeeEEEEc
Confidence 222367888888876665554
No 398
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.46 E-value=0.47 Score=40.39 Aligned_cols=223 Identities=10% Similarity=0.016 Sum_probs=104.8
Q ss_pred CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee------CCCcEEEEEcCCCceEEEeeccCCCCCceeEE
Q 022590 32 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAGAGGHRNEVLSV 105 (294)
Q Consensus 32 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l 105 (294)
+|.+.-.+-..-.++.-..+....+...+++| +++.++... .|+.-.+|-...+.....+. .......-
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt----~g~~~t~P 402 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL----EGHSLTRP 402 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee----cCCCCCCc
Confidence 66665544322223322323334678999999 776665554 24444444332232223332 12237888
Q ss_pred EEecCCCceEEeeecCCc-EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee
Q 022590 106 DFHPSDIYRIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 182 (294)
Q Consensus 106 ~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 182 (294)
.|+| ++..+.+...... .++.+-............ . ..... .....|..+.|+ |..++...
T Consensus 403 sWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd--~----------ge~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 403 SWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVD--A----------SAVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred eECC-CCCceEEEecCcceEEEeccCCCceEEEEecc--C----------chhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 9999 7666666643212 222221110000000000 0 00000 234568888886 77666654
Q ss_pred CCCeEEE---ecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc
Q 022590 183 VDNEIVL---WEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 258 (294)
Q Consensus 183 ~d~~i~i---wd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (294)
++.|.+ -....+.. .......+.. ....+..+.|..++. |+++..++.-.+|.+.-.-.... .+..
T Consensus 467 -~g~v~Va~Vvr~~~G~~-----~l~~~~~l~~~l~~~~~~l~W~~~~~---L~V~~~~~~~~v~~v~vDG~~~~-~~~~ 536 (591)
T PRK13616 467 -GGKVYLAVVEQTEDGQY-----ALTNPREVGPGLGDTAVSLDWRTGDS---LVVGRSDPEHPVWYVNLDGSNSD-ALPS 536 (591)
T ss_pred -CCEEEEEEEEeCCCCce-----eecccEEeecccCCccccceEecCCE---EEEEecCCCCceEEEecCCcccc-ccCC
Confidence 467766 33223321 1111122222 223357789999984 44555444444554432221111 1122
Q ss_pred cccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590 259 AQSKSPIRQTAMSYDGSTILSCCEDGAIW 287 (294)
Q Consensus 259 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 287 (294)
.....++.+++-+++ .++....+|.+.
T Consensus 537 ~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 537 RNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred CCccCceEEEecCCc--eEEEEcCCceEE
Confidence 123467888888764 355556666443
No 399
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.45 E-value=0.31 Score=38.24 Aligned_cols=73 Identities=19% Similarity=0.092 Sum_probs=44.6
Q ss_pred CCeeEEEEcccC-----CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590 215 CDIWFIKFSCDF-----HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 287 (294)
Q Consensus 215 ~~i~~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 287 (294)
..+..+.|.... ++.++++.-..+.|....++..........-.......+..+++.|||.+.++-+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 445666665433 2346666666778888888755322211111223445799999999999999888899875
No 400
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.42 E-value=0.51 Score=41.51 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=98.5
Q ss_pred CCCceEEEEeec----------CCeEEEEEcCCccccceeccc--CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 20 VDGIPFLVAGGI----------NGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 20 ~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
.|...++++|.. .|.|.|+...+++.++....+ .+.|.++.-- +++++|+ -...|++|++.+++
T Consensus 784 ~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~ 859 (1096)
T KOG1897|consen 784 DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTER 859 (1096)
T ss_pred CCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccc
Confidence 452338888863 588999988775444444332 3556666543 4666654 44689999998886
Q ss_pred eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590 88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (294)
.++.-. .+..++..+...- .+..+++|..=+++.+...+..+. ......-..++.+
T Consensus 860 eLr~e~---~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg--------------------~f~evArD~~p~W 915 (1096)
T KOG1897|consen 860 ELRIEC---NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEG--------------------NFEEVARDYNPNW 915 (1096)
T ss_pred eehhhh---cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCC--------------------ceEEeehhhCccc
Confidence 665544 5888899999887 888899998888888776665221 1223344557778
Q ss_pred eeeccee-cceEEEeeCCCeEEEecCC
Q 022590 168 VDCNRWL-GDFILSKSVDNEIVLWEPK 193 (294)
Q Consensus 168 i~~~~~~-~~~l~~~~~d~~i~iwd~~ 193 (294)
++++.+- ++.++.+..+|.+.+-...
T Consensus 916 mtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 916 MTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eeeEEEecCceEEeecccccEEEEEec
Confidence 8877774 7777777788887776554
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.091 Score=46.58 Aligned_cols=155 Identities=12% Similarity=0.013 Sum_probs=88.9
Q ss_pred CceeEEEEecCCCceEEee--ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---
Q 022590 100 NEVLSVDFHPSDIYRIASC--GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--- 174 (294)
Q Consensus 100 ~~v~~l~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 174 (294)
-++..+...+ +....++. +.+-.|..||++......-.... + -..-...........++.|+
T Consensus 101 ~pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~----p--------l~~s~ts~ek~vf~~~~~wnP~v 167 (1405)
T KOG3630|consen 101 IPIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTV----P--------LKNSATSFEKPVFQLKNVWNPLV 167 (1405)
T ss_pred ccceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhcc----c--------cccccchhccccccccccccCCc
Confidence 3455555566 54443333 33447899999984332211000 0 00000111122344566676
Q ss_pred cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590 175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 254 (294)
Q Consensus 175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (294)
....++...|+.|++..+..... ....++. ....++++|+|.|+ .++.|...|++.-|...-.......
T Consensus 168 p~n~av~l~dlsl~V~~~~~~~~--------~v~s~p~-t~~~Tav~WSprGK--Ql~iG~nnGt~vQy~P~leik~~ip 236 (1405)
T KOG3630|consen 168 PLNSAVDLSDLSLRVKSTKQLAQ--------NVTSFPV-TNSQTAVLWSPRGK--QLFIGRNNGTEVQYEPSLEIKSEIP 236 (1405)
T ss_pred cchhhhhccccchhhhhhhhhhh--------hhcccCc-ccceeeEEeccccc--eeeEecCCCeEEEeecccceeeccc
Confidence 44667778899999888764432 1222222 35578999999994 7999999999998876554211222
Q ss_pred eccccccCCCeEEEEEccCCCEEEE
Q 022590 255 RLSHAQSKSPIRQTAMSYDGSTILS 279 (294)
Q Consensus 255 ~~~~~~~~~~v~~~~~s~~~~~l~s 279 (294)
..+. .....|.+++|-....+|++
T Consensus 237 ~Pp~-~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 237 EPPV-EENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CCCc-CCCcceeEEEEecceeEEEE
Confidence 2221 11467999999887777765
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.40 E-value=0.43 Score=40.47 Aligned_cols=106 Identities=9% Similarity=0.205 Sum_probs=64.9
Q ss_pred cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc-----CCC
Q 022590 175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-----SSP 249 (294)
Q Consensus 175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-----~~~ 249 (294)
+...++-+....+.|||.+.+.. ..-..+ .....|..+.|...+.+..+++-+-.+.|.+|--. ...
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~l-------E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVL-------EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEE-------EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 44444545566799999987642 111222 34577889988876666677777778888888542 111
Q ss_pred --ceeeeeccccccC-CCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590 250 --PVLIARLSHAQSK-SPIRQTAMSYDGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 250 --~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 290 (294)
......+....+. .+|.+..|.++|.+++.+ ++.+.|++
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 1223333222333 589999999999766544 34566665
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.34 E-value=0.18 Score=42.64 Aligned_cols=107 Identities=10% Similarity=0.023 Sum_probs=68.2
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCC-CCceEEEeeCCCcEEEEEcC---------CCce
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQ---------TGIC 88 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~---------~~~~ 88 (294)
.-++ ..++-+....+.|||...+.....-. ...+.|.++.|... +++.+++.+....|.++--. +...
T Consensus 39 s~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 39 SIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred ccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 3444 33344445679999998776433222 34788999999543 67788888888999998542 1123
Q ss_pred EEEeeccCCCC-CceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 89 ILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 89 ~~~~~~~~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
+..+... .|+ .+|.+..|.+ ++.+++ |+ ++.+.|+|-.-
T Consensus 118 i~~i~i~-~~T~h~Igds~Wl~-~G~LvV-~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 118 IRKIDIS-SHTPHPIGDSIWLK-DGTLVV-GS-GNQLFVFDKWL 157 (631)
T ss_pred eEEEEee-cCCCCCccceeEec-CCeEEE-Ee-CCEEEEECCCc
Confidence 3333321 344 6899999998 776444 33 36788887543
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.32 E-value=0.13 Score=42.42 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=71.0
Q ss_pred cCceeEEEEEeecC-CCceEEEEeecCCeEEEEEcC-----Cccccceeccc-Cc--c--eEEEEeCCCCCceEEEeeCC
Q 022590 7 KEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVS-----NEKLHKSFVGH-GD--S--INEIRTQPLKPSLVVSASKD 75 (294)
Q Consensus 7 h~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~h-~~--~--v~~~~~~~~~~~~l~s~~~d 75 (294)
.-+.|..++|++-- .+.+.|++......|.||.+. .++....-..+ .. + -..+.|+| ....|+.-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecC
Confidence 34679999999421 222245555666789999885 22222211111 11 1 24578999 77777766655
Q ss_pred CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEee-ecCCcEEEEeccc
Q 022590 76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKE 131 (294)
Q Consensus 76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~-~~dg~i~~wd~~~ 131 (294)
..-.+.++........... ...+.|.|.+|.+ +|+.|+++ +..=.-++||-.+
T Consensus 134 dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADI--KTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCceEEEec--cCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCch
Confidence 5445677764443333222 3677899999999 66555554 4434457777554
No 405
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.29 E-value=0.18 Score=36.46 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=64.7
Q ss_pred EEEEEeecCCCceEEEEeecCCeEEEEE--cCCccc-----cceecc---cCc-ceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 12 YTVSWACNVDGIPFLVAGGINGIIRVID--VSNEKL-----HKSFVG---HGD-SINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~--~~~~~~-----~~~~~~---h~~-~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
+.++|. .+.+.+-++-+.+-.|.-|| ..+|.. +..++. ... .--.++... ++.+.+++-..++|..
T Consensus 161 Ngl~Wd--~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 161 NGLAWD--SDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQK 237 (310)
T ss_pred cccccc--ccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEE
Confidence 457887 56665777788888898888 455532 222221 111 122344454 7888899999999999
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHP 109 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~ 109 (294)
.|..+|+.+..+.. ....|++++|--
T Consensus 238 ~dp~tGK~L~eikl---Pt~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTGKILLEIKL---PTPQITSCCFGG 263 (310)
T ss_pred ECCCCCcEEEEEEc---CCCceEEEEecC
Confidence 99999999999985 578899999964
No 406
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.21 E-value=0.5 Score=38.10 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=63.3
Q ss_pred CCCceEEEEeecCCeEEEEEcCCcccc--ce-e-cccCcceEEEEeCC---CCC-ceEEEeeCCCcEEEEEcCCC--c--
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLH--KS-F-VGHGDSINEIRTQP---LKP-SLVVSASKDESVRLWNVQTG--I-- 87 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~-~-~~h~~~v~~~~~~~---~~~-~~l~s~~~dg~i~vwd~~~~--~-- 87 (294)
+++...+++|+..|.++||+...+... .. + ..-..+|..+..-+ ... ..||. =.-..+.||.+... .
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 334448999999999999998544311 11 1 12356888777532 122 33444 44577888877321 1
Q ss_pred --eEEEeeccCCCC--CceeEEEEecCC----CceEEeeecCCcEEEEeccc
Q 022590 88 --CILIFAGAGGHR--NEVLSVDFHPSD----IYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 88 --~~~~~~~~~~~~--~~v~~l~~~~~~----~~~l~~~~~dg~i~~wd~~~ 131 (294)
....+.....|. .....++.-|.+ ..++.+-+.||.+.+|+-+.
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~ 164 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES 164 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc
Confidence 001111111243 233444444422 46788889999999999876
No 407
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.68 Score=39.55 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
-.|+|++. +|+.+..+.- ....+-.+.|+ +...|++...+|++++|++-.
T Consensus 64 ~~I~If~~-sG~lL~~~~w---~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILW---KHGELIGMGWS--DDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEec-cccchHHHHh---cCCCeeeeccc--CCceEEEEeccceEEEeecch
Confidence 45888887 6776665542 33378899998 455688889999999999876
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.12 E-value=0.56 Score=37.85 Aligned_cols=58 Identities=7% Similarity=0.058 Sum_probs=42.4
Q ss_pred ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
.++.+-+.||.+.+|+-+... ....++..-..+ .+++.+....+++++.+..+.-|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPg---Pl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPG---PLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCc---CeEEeecCCEEEEecCceeEEEecH
Confidence 689999999999999987652 333333222223 4678888889999998888887765
No 409
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.31 Score=38.98 Aligned_cols=158 Identities=9% Similarity=0.009 Sum_probs=86.7
Q ss_pred EEEEeCCCCCceEEEeeCCCcEEEEEcCC--CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccc
Q 022590 57 NEIRTQPLKPSLVVSASKDESVRLWNVQT--GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 134 (294)
Q Consensus 57 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 134 (294)
+.+-|.. .++.|++. ..|.+.=|-+.. ......+.. ...++|.++.|++ ++..+|+--.|++|.+++......
T Consensus 26 ngvFfDD-aNkqlfav-rSggatgvvvkgpndDVpiSfdm--~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 26 NGVFFDD-ANKQLFAV-RSGGATGVVVKGPNDDVPISFDM--DDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred cceeecc-CcceEEEE-ecCCeeEEEEeCCCCCCCceeee--cCCCceeEEEecc-CcceEEEEecCceEEEEecCCCch
Confidence 4455554 33333333 334455555432 223333332 3567999999999 999999999999999998844111
Q ss_pred ccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC
Q 022590 135 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 213 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 213 (294)
. .............|....|. ..-++.... ..+.+|-....+. .++..+.+
T Consensus 101 ~-------------------l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~-~G~e~y~v~pekr--------slRlVks~ 152 (657)
T KOG2377|consen 101 Q-------------------LEYTQECKTKNANILGFCWTSSTEIAFITD-QGIEFYQVLPEKR--------SLRLVKSH 152 (657)
T ss_pred h-------------------hHHHHHhccCcceeEEEEEecCeeEEEEec-CCeEEEEEchhhh--------hhhhhhhc
Confidence 1 01111222234457777776 333444333 3356665543221 34445556
Q ss_pred CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590 214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 247 (294)
Q Consensus 214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 247 (294)
...|....|+++..--+|+++-..+.+.=+.++.
T Consensus 153 ~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 153 NLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred ccCccEEEEccccceEeeeccccccccccEEEee
Confidence 6678888888887532333333444444444444
No 410
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.85 Score=39.01 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=60.0
Q ss_pred EEEeecCCCceEEEEeecC----------CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590 14 VSWACNVDGIPFLVAGGIN----------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83 (294)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 83 (294)
+-|.+.|-|. -+|..-.+ -.|+|++. +|+.+..+.-....+-.+.|+. ...|+....+|++.+|++
T Consensus 36 ~~fa~Ap~gG-pIAV~r~p~~~~~~~~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~ 111 (829)
T KOG2280|consen 36 VYFACAPFGG-PIAVTRSPSKLVPLYSARPYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGL 111 (829)
T ss_pred eEEEecccCC-ceEEEecccccccccccceeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeec
Confidence 3344446565 34444333 34788885 5666666654455888999996 456777889999999998
Q ss_pred CCCceEEEeec-cCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590 84 QTGICILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126 (294)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~ 126 (294)
- |+.+..... .......|..+.+.. +|-.++ ..+|.+.+
T Consensus 112 ~-ge~ie~~svg~e~~~~~I~ec~~f~-~GVavl--t~~g~v~~ 151 (829)
T KOG2280|consen 112 L-GEFIESNSVGFESQMSDIVECRFFH-NGVAVL--TVSGQVIL 151 (829)
T ss_pred c-hhhhcccccccccccCceeEEEEec-CceEEE--ecCCcEEE
Confidence 4 444433211 011233455555554 443333 33454443
No 411
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.98 E-value=0.33 Score=41.59 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=75.6
Q ss_pred eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-----------c---------ccceecccCcceEEEEeC--CCCCc
Q 022590 10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----------K---------LHKSFVGHGDSINEIRTQ--PLKPS 67 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------~---------~~~~~~~h~~~v~~~~~~--~~~~~ 67 (294)
.|+-+....--... .|+.+..||.|.+|.+++- + +...+. -...+++++++ . ..+
T Consensus 102 tIN~i~v~~lg~~E-VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEE-VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSR 178 (717)
T ss_pred eeeEEEecccCCee-EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cce
Confidence 45555444222334 8999999999999976321 0 111111 34578999998 6 678
Q ss_pred eEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC----Cc-eEEeeecCCcEEEEec
Q 022590 68 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD----IY-RIASCGMDNTVKIWSM 129 (294)
Q Consensus 68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----~~-~l~~~~~dg~i~~wd~ 129 (294)
+||+++....|.|+-...............|...|.+|+|.+.+ +. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888888665421111111011366789999998743 22 7888899999999888
No 412
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.91 E-value=0.4 Score=34.37 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=84.2
Q ss_pred EEEEeecCCeEEEEEcCC--ccccceecccCcceEEEEeCCCCCceEEEeeCC---C---cEEEE-EcCC----CceEE-
Q 022590 25 FLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---E---SVRLW-NVQT----GICIL- 90 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g---~i~vw-d~~~----~~~~~- 90 (294)
.|+.+...+.|.+|++.+ .++..++.. -+.|..+.++. .|++|++--.+ . .+|+| |.+. .+.+.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 454446677899999873 345555653 37899999999 89999986432 2 56665 2211 11111
Q ss_pred --------------------EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590 91 --------------------IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 150 (294)
Q Consensus 91 --------------------~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
.+.. .-..++.+++-.|..|+++ .|+ ++.+.+|.+....... ..+
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiEl--Pl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~-~~~---------- 172 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIEL--PLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQS-EKF---------- 172 (215)
T ss_pred EEcccccccCCCCccccceEEEEe--cCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEec-ccc----------
Confidence 1111 2355688999999777744 444 4689999988632210 000
Q ss_pred CceeeeceEEeecCCC-ceeecceecceEEEeeCCCeEEEecC
Q 022590 151 TKYVQFPVFIASVHSN-YVDCNRWLGDFILSKSVDNEIVLWEP 192 (294)
Q Consensus 151 ~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~~~~~d~~i~iwd~ 192 (294)
.........+..|.+ ....+++.++++|..+. -.+++..+
T Consensus 173 -~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 173 -SFLDFERSLIDHIDNFKPTQVAICEGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred -cEEechhhhhheecCceEEEEEEEeeEEEEecC-CEEEEEEE
Confidence 000111111122222 25567777888888664 45555543
No 413
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.84 E-value=0.0015 Score=51.64 Aligned_cols=150 Identities=12% Similarity=0.128 Sum_probs=99.3
Q ss_pred eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590 11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL 90 (294)
Q Consensus 11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 90 (294)
+..+.+...|.+. -++.++.+..+..||-. ++...... .++....++|....+..++.+-..+.+.+||+.+....
T Consensus 35 v~pi~~~w~~e~~-nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq- 110 (615)
T KOG2247|consen 35 VGPIIHRWRPEGH-NLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ- 110 (615)
T ss_pred cccceeeEecCCC-ceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-
Confidence 3344444447776 48888888889999843 44333333 34566778888844556667778899999999765322
Q ss_pred EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceee
Q 022590 91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 170 (294)
Q Consensus 91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (294)
.+.....|.... +.|++ +...++.+-..|.+.+++-... ........|...+.+
T Consensus 111 qLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgts-----------------------R~iiv~Gkh~RRgtq 164 (615)
T KOG2247|consen 111 QLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTS-----------------------RRIIVMGKHQRRGTQ 164 (615)
T ss_pred HHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccch-----------------------hhhhhhcccccceeE
Confidence 222211233333 78998 7788888989999999998872 223334448888888
Q ss_pred ccee-cceEEEeeCCCeEEEe
Q 022590 171 NRWL-GDFILSKSVDNEIVLW 190 (294)
Q Consensus 171 ~~~~-~~~l~~~~~d~~i~iw 190 (294)
+++. .++.+.++.|..+.+-
T Consensus 165 ~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 165 IAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred EEecccceeeecCcHHHHHHh
Confidence 8887 7777777777655443
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.80 E-value=0.059 Score=39.25 Aligned_cols=80 Identities=11% Similarity=0.110 Sum_probs=51.6
Q ss_pred ceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCcee-eeeee----cCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 167 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI-LQKYP----VPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 167 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~----~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
++..+..+++++++.+.+|.+++||+.+.+.........+ +.... .....|..+.++.+|. -+++ -.+|..+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~-lsng~~y 90 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVT-LSNGDSY 90 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEE-EeCCCEE
Confidence 3444555688999999999999999998865433211111 11100 3456788888887774 3333 3467889
Q ss_pred EEeccCCC
Q 022590 242 VWELQSSP 249 (294)
Q Consensus 242 i~d~~~~~ 249 (294)
.|+..-..
T Consensus 91 ~y~~~L~~ 98 (219)
T PF07569_consen 91 SYSPDLGC 98 (219)
T ss_pred Eeccccce
Confidence 99876654
No 415
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.45 Score=33.84 Aligned_cols=114 Identities=18% Similarity=0.052 Sum_probs=68.3
Q ss_pred CCceEEEEeecC--CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCC
Q 022590 21 DGIPFLVAGGIN--GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 98 (294)
Q Consensus 21 ~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 98 (294)
+|. ++.+.+.- ..|++||+.+++.+.+-+-....+..=-.......+.+-.-.+|.-..+|.++-+++..+. .
T Consensus 55 ~g~-i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~----y 129 (262)
T COG3823 55 DGH-ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS----Y 129 (262)
T ss_pred CCE-EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc----c
Confidence 443 66666543 4699999999887655432211221111111133444555678888899999888888776 6
Q ss_pred CCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceee
Q 022590 99 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 142 (294)
Q Consensus 99 ~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 142 (294)
.+.=+.++.. +.+ |+.+....+++.-|..++.....-.++.
T Consensus 130 ~GeGWgLt~d--~~~-LimsdGsatL~frdP~tfa~~~~v~VT~ 170 (262)
T COG3823 130 EGEGWGLTSD--DKN-LIMSDGSATLQFRDPKTFAELDTVQVTD 170 (262)
T ss_pred CCcceeeecC--Ccc-eEeeCCceEEEecCHHHhhhcceEEEEE
Confidence 6666777764 334 5555555678887877755443333333
No 416
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.72 E-value=0.0055 Score=52.32 Aligned_cols=162 Identities=22% Similarity=0.381 Sum_probs=89.7
Q ss_pred EEEEEeec-CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEe-----------CCCCCceEEEeeCCCcEE
Q 022590 12 YTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT-----------QPLKPSLVVSASKDESVR 79 (294)
Q Consensus 12 ~~~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~-----------~~~~~~~l~s~~~dg~i~ 79 (294)
.-+.|++- ++.- ++..+-.++.|++.+.++... ..+.+|...+..++| +| ||..++.+..||.++
T Consensus 184 ~~V~wcp~~~~~~-~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKV-YICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVG 260 (1283)
T ss_pred ceeeecccccccc-eeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccc
Confidence 44455532 2333 888888999999988755433 555668777766654 77 888899999999988
Q ss_pred EEEcC-CC----ceEEEeeccCCCC-CceeEEEEecCCC--------ceEEee-ecCCcEEEEeccccccccccceeecC
Q 022590 80 LWNVQ-TG----ICILIFAGAGGHR-NEVLSVDFHPSDI--------YRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTD 144 (294)
Q Consensus 80 vwd~~-~~----~~~~~~~~~~~~~-~~v~~l~~~~~~~--------~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~ 144 (294)
.|.+. +| .++...+ .|. .+-.|..++.+.. .+++++ ..+..+++|.....+......
T Consensus 261 f~Qiyi~g~~~~rclhewk---phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~----- 332 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWK---PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL----- 332 (1283)
T ss_pred eeeeeeeccccHhhhhccC---CCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----
Confidence 88764 22 2333333 455 3434443443110 123333 345668888766543321111
Q ss_pred CCCCCCCceeeeceEEeecCCCceeecc---eecceEEEeeCCCeEEEecCCC
Q 022590 145 LPSKFPTKYVQFPVFIASVHSNYVDCNR---WLGDFILSKSVDNEIVLWEPKM 194 (294)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~l~~~~~d~~i~iwd~~~ 194 (294)
...+.....|...|..+. |--..++..+-++.|.+|.-+.
T Consensus 333 ----------~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 333 ----------IDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred ----------ccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 111222334555554432 2233455566677788776543
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.65 E-value=0.0033 Score=53.60 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=69.3
Q ss_pred ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC--Cccccceec-----ccCcceEEEEeCCC--CCceEEEeeCCC
Q 022590 6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFV-----GHGDSINEIRTQPL--KPSLVVSASKDE 76 (294)
Q Consensus 6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~-----~h~~~v~~~~~~~~--~~~~l~s~~~dg 76 (294)
.-.+.|-.++|. +-+-. .++ -.-|.+.||+++ .|+....+. .-...+.-+.|.|. +.-++..+-.++
T Consensus 130 gf~G~v~dl~fa-h~~~p-k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 130 GFPGGVGDLQFA-HTKCP-KGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred cCCCCccccccc-ccCCh-HHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 345666667775 11221 222 334778899875 344333222 22233444555542 445677777889
Q ss_pred cEEEEEcCCCceEEEeeccCCCCCceeEEEE-----------ecCCCceEEeeecCCcEEEEeccc
Q 022590 77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDF-----------HPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~-----------~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
+|++.++.+... ..+. +|...+..++| +| ||..|+.++.||.++.|.+.-
T Consensus 206 ~i~lL~~~ra~~-~l~r---sHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFR---SHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ceeEeeechHHH-HHHH---hcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeee
Confidence 999888765443 2333 47766666554 67 778888888888888887654
No 418
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.64 E-value=0.56 Score=34.08 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=56.9
Q ss_pred ceeeccee---cceEEEeeCCCeEEEec--CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 167 YVDCNRWL---GDFILSKSVDNEIVLWE--PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 167 ~i~~~~~~---~~~l~~~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
--+.++|+ ..+.++-+.+-.|.-|| ..++..........+....+........+++..+| ++.++.-..|+|.
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG--~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG--NLYVATFNGGTVQ 236 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC--cEEEEEecCcEEE
Confidence 34466776 23444556666776676 55554321111111111001111122334554444 6778888889999
Q ss_pred EEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSY 272 (294)
Q Consensus 242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 272 (294)
..|..+++.+....++ ...|+++||--
T Consensus 237 ~~dp~tGK~L~eiklP----t~qitsccFgG 263 (310)
T KOG4499|consen 237 KVDPTTGKILLEIKLP----TPQITSCCFGG 263 (310)
T ss_pred EECCCCCcEEEEEEcC----CCceEEEEecC
Confidence 9999999876666665 35799999963
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.63 E-value=1.4 Score=38.54 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=51.2
Q ss_pred ceEEEEeCCCCCceEEEeeCCCcEEEEEcCC----------Cce--EE-Eeec-----cCCCCCceeEEEEecCC--Cce
Q 022590 55 SINEIRTQPLKPSLVVSASKDESVRLWNVQT----------GIC--IL-IFAG-----AGGHRNEVLSVDFHPSD--IYR 114 (294)
Q Consensus 55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~----------~~~--~~-~~~~-----~~~~~~~v~~l~~~~~~--~~~ 114 (294)
.|..|.++| ++.+|+..|..|.. |-.+.. |+. .. .+.. ...+...|..+.|+|.+ +..
T Consensus 86 ~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 688899999 88888888886654 433321 111 11 1110 11345689999999942 577
Q ss_pred EEeeecCCcEEEEeccc
Q 022590 115 IASCGMDNTVKIWSMKE 131 (294)
Q Consensus 115 l~~~~~dg~i~~wd~~~ 131 (294)
|++-..|+++|+||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 88888999999999975
No 420
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.62 E-value=0.77 Score=35.50 Aligned_cols=159 Identities=12% Similarity=0.106 Sum_probs=87.4
Q ss_pred EEEEEcCCccccceec----c-cCcceEEEEeCCCCCceEEEeeC---------CCcEEEEEcC-CCceEEEeeccCCCC
Q 022590 35 IRVIDVSNEKLHKSFV----G-HGDSINEIRTQPLKPSLVVSASK---------DESVRLWNVQ-TGICILIFAGAGGHR 99 (294)
Q Consensus 35 i~iw~~~~~~~~~~~~----~-h~~~v~~~~~~~~~~~~l~s~~~---------dg~i~vwd~~-~~~~~~~~~~~~~~~ 99 (294)
+.+++.+++..+..+. + .....+.+...| ++.+.++... -..=.+|.+. .+..+..+. .+-
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~---~~~ 162 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD---DDL 162 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec---CcE
Confidence 5566665554422221 1 123556788888 6665554333 0112466655 455555555 355
Q ss_pred CceeEEEEecCCCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cc
Q 022590 100 NEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 176 (294)
Q Consensus 100 ~~v~~l~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 176 (294)
..-+.|+|+| ++..|+.+ +..+.|.-|++......... ...........+..-.++.+ |+
T Consensus 163 ~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~----------------~~~~~~~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 163 TIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGG----------------RRGFVDFDEEPGLPDGMAVDADGN 225 (307)
T ss_pred EecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCC----------------cceEEEccCCCCCCCceEEeCCCC
Confidence 6678999999 66555544 55588888887631000000 11112222234444455554 55
Q ss_pred eEEEeeCCC-eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590 177 FILSKSVDN-EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 224 (294)
Q Consensus 177 ~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 224 (294)
+.+++...| .|..|+.. ++ .+..+..+...+++++|--
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~---------l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GK---------LLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEEecccCCceEEEECCC-Cc---------EEEEEECCCCCCccceEeC
Confidence 554544444 89999987 44 5677777766677777754
No 421
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=95.59 E-value=1.7 Score=39.40 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=88.8
Q ss_pred CceEEeee---------cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEee
Q 022590 112 IYRIASCG---------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS 182 (294)
Q Consensus 112 ~~~l~~~~---------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~ 182 (294)
..+|++|. .-|.+.++|+-.-.+.. .+ +...............++|..++--..+|++ +
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPep----------gk-P~t~~KlKel~~eE~KGtVsavceV~G~l~~-~ 1113 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEP----------GK-PFTKNKLKELYIEEQKGTVSAVCEVRGHLLS-S 1113 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCC----------CC-CcccceeeeeehhhcccceEEEEEeccEEEE-c
Confidence 35677764 24789999987621111 11 1111122233334456777777665555555 3
Q ss_pred CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccC
Q 022590 183 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK 262 (294)
Q Consensus 183 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 262 (294)
....|.+|++..... ...+.-+ ..++.......-. ++++.|+--..|.+.-..... .....+......
T Consensus 1114 ~GqKI~v~~l~r~~~------ligVaFi---D~~~yv~s~~~vk--nlIl~gDV~ksisfl~fqeep-~rlsL~srd~~~ 1181 (1366)
T KOG1896|consen 1114 QGQKIIVRKLDRDSE------LIGVAFI---DLPLYVHSMKVVK--NLILAGDVMKSISFLGFQEEP-YRLSLLSRDFEP 1181 (1366)
T ss_pred cCcEEEEEEeccCCc------ceeeEEe---ccceeEEehhhhh--hheehhhhhhceEEEEEccCc-eEEEEeecCCch
Confidence 456899999943321 0111111 2223333333333 578888877778887776543 223333322233
Q ss_pred CCeEEEEEccCCC--EEEEeccCCcEEEEecCCC
Q 022590 263 SPIRQTAMSYDGS--TILSCCEDGAIWRWDAIPT 294 (294)
Q Consensus 263 ~~v~~~~~s~~~~--~l~s~~~dg~i~vw~~~~~ 294 (294)
-.+.++.|--+|. +++++..|+.|++|-..|+
T Consensus 1182 l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1182 LNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred hhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence 4577788877765 6788899999999987764
No 422
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.55 E-value=0.82 Score=35.35 Aligned_cols=223 Identities=14% Similarity=0.033 Sum_probs=114.2
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeec-cCC-
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-AGG- 97 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~- 97 (294)
++...++.+--..+.|.-|+..+++. ..+. +.+.+.++.... .+..|+++.. | +.+++.+++..+..+.. ..+
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d-~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALID-AGGRLIACEH-G-VRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeec-CCCeEEEEcc-c-cEEEeccCCceeEEeccccCCC
Confidence 55554666667778888888876643 2333 334445554444 3445555443 3 56677766665333221 111
Q ss_pred CCCceeEEEEecCCCceEEeeecCC----------cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590 98 HRNEVLSVDFHPSDIYRIASCGMDN----------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 167 (294)
Q Consensus 98 ~~~~v~~l~~~~~~~~~l~~~~~dg----------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (294)
-....+.+...| ++.+.++.. .+ .-.+|.+... .........+-..
T Consensus 109 ~~~r~ND~~v~p-dG~~wfgt~-~~~~~~~~~~~~~G~lyr~~p~----------------------g~~~~l~~~~~~~ 164 (307)
T COG3386 109 PLNRPNDGVVDP-DGRIWFGDM-GYFDLGKSEERPTGSLYRVDPD----------------------GGVVRLLDDDLTI 164 (307)
T ss_pred CcCCCCceeEcC-CCCEEEeCC-CccccCccccCCcceEEEEcCC----------------------CCEEEeecCcEEe
Confidence 124567788888 666444332 21 0012222210 1112223333444
Q ss_pred eeeccee--cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC-eEEEE
Q 022590 168 VDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG-KIFVW 243 (294)
Q Consensus 168 i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-~i~i~ 243 (294)
-+.++|+ ++.|+.+-. .+.|.-|++......... . .............-.++...++ .+.+++-..| .|..|
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~-~-~~~~~~~~~~G~PDG~~vDadG--~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG-R-RGFVDFDEEPGLPDGMAVDADG--NLWVAAVWGGGRVVRF 240 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC-c-ceEEEccCCCCCCCceEEeCCC--CEEEecccCCceEEEE
Confidence 5677887 555555544 478888877631111110 1 1122222334555667777777 3443444443 89999
Q ss_pred eccCCCceeeeeccccccCCCeEEEEEc-cCCCEEEEe
Q 022590 244 ELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILSC 280 (294)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~ 280 (294)
+.. ++......++. ..+++++|- |+.+.|...
T Consensus 241 ~pd-G~l~~~i~lP~----~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 241 NPD-GKLLGEIKLPV----KRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CCC-CcEEEEEECCC----CCCccceEeCCCcCEEEEE
Confidence 998 66555555442 457778885 445544433
No 423
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.31 Score=44.10 Aligned_cols=160 Identities=8% Similarity=-0.000 Sum_probs=85.1
Q ss_pred eecCCeEEEEEcCCccccceecccCcceEEEEeCCCC--------CceEEEeeCCCcEEEEEcCCCceEE-------Eee
Q 022590 29 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--------PSLVVSASKDESVRLWNVQTGICIL-------IFA 93 (294)
Q Consensus 29 ~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~-------~~~ 93 (294)
.+.|+.+.+|+.+++.....+.+-...|..+..-... ..+|+.++. -.|.++-+.-.+... .+.
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence 3567899999999988778887777777776642211 223444433 446665443211110 111
Q ss_pred ccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc--cccccccceeecCCCCCCCCceeeeceEEe-ecCCCceee
Q 022590 94 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE--FWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDC 170 (294)
Q Consensus 94 ~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 170 (294)
. .-....|+|+.... +|+.|++| .|| .+|.+.- ..........-....... .......+..+ ..+..+|..
T Consensus 174 i-~~dg~~V~~I~~t~-nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~-ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 174 I-SVDGVSVNCITYTE-NGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSV-LSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred e-ecCCceEEEEEecc-CCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhH-HHHhhhhhhcCCCCCCCccee
Confidence 1 01345688888554 77755554 566 5554432 100000000000000000 00000112222 366778999
Q ss_pred ccee--cceEEEeeCCCeEEEecCCCC
Q 022590 171 NRWL--GDFILSKSVDNEIVLWEPKMK 195 (294)
Q Consensus 171 ~~~~--~~~l~~~~~d~~i~iwd~~~~ 195 (294)
+..+ .+.+.+-+..|+|..||+...
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccCC
Confidence 8886 678889999999999999873
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.13 Score=45.65 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=73.9
Q ss_pred EEEEEeecCCCceEEEEeec-CCeEEEEEcCCcccc-----ceec------ccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590 12 YTVSWACNVDGIPFLVAGGI-NGIIRVIDVSNEKLH-----KSFV------GHGDSINEIRTQPLKPSLVVSASKDESVR 79 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~-----~~~~------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 79 (294)
..+.+.+.+|+....+.-+. +-.|..||+.+-..- .-+. ....-..++.|.|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 33444445776622333333 336888998653211 1111 12234577889985555677788899999
Q ss_pred EEEcCCCce-EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 80 LWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 80 vwd~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
+..+..... ...+. .....++++|+| .+..++.|-..|++.-|...-
T Consensus 182 V~~~~~~~~~v~s~p----~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP----VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhcccC----cccceeeEEecc-ccceeeEecCCCeEEEeeccc
Confidence 987754322 22233 667889999999 999999999999998886654
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.38 Score=38.52 Aligned_cols=113 Identities=12% Similarity=-0.036 Sum_probs=70.5
Q ss_pred eccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590 170 CNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248 (294)
Q Consensus 170 ~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 248 (294)
.+-|+ .+..+.+...|.+.=|-..... ..-++..-....++|.++.|++|. ..+|+--.+..|.+++....
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpn------dDVpiSfdm~d~G~I~SIkFSlDn--kilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPN------DDVPISFDMDDKGEIKSIKFSLDN--KILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCC------CCCCceeeecCCCceeEEEeccCc--ceEEEEecCceEEEEecCCC
Confidence 34444 3333444444555556554433 111233333456789999999999 58999999999999999766
Q ss_pred CceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
++......++......|....|+.. .-+|..+..| +-+|-+.
T Consensus 99 ~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 99 NSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred chhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence 6555555544455566889999866 4455554444 5555443
No 426
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.44 E-value=1.4 Score=37.23 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=44.2
Q ss_pred EEEEeecCCeEEEEEcCCccccceecc--cC--cceEE-EEeCCCCCceEEEee------CCCcEEEEEcCCCceEEEee
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVG--HG--DSINE-IRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFA 93 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~--h~--~~v~~-~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~ 93 (294)
.++.++.|+.+.-.|..+|+.+..... +. ..+++ -... ++ .++.+. .+|.|.-+|.++|+.+-.+.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 577888899999999999998766542 11 11111 1111 33 344443 36899999999999887765
Q ss_pred c
Q 022590 94 G 94 (294)
Q Consensus 94 ~ 94 (294)
.
T Consensus 199 ~ 199 (527)
T TIGR03075 199 T 199 (527)
T ss_pred C
Confidence 4
No 427
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.38 E-value=0.44 Score=31.24 Aligned_cols=107 Identities=8% Similarity=0.216 Sum_probs=63.4
Q ss_pred cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE---EcccCCcceEEEEcCCCeEEEEeccCCCce
Q 022590 175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK---FSCDFHYNAAAIGNREGKIFVWELQSSPPV 251 (294)
Q Consensus 175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 251 (294)
..-|++++..|+|.|++.......... ....+..+.. ...|++++ +.|+.....|+.|+. ..+..||+..+...
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~ 86 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDL 86 (136)
T ss_pred ceeEEEEecCCEEEEECCCcccccccc-ccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchh
Confidence 346888889999999998765432211 1223333333 34466664 444555578888875 56899999988755
Q ss_pred eeeeccccccCCCeEEEEEcc----CCCEEEEeccCCcEEEEe
Q 022590 252 LIARLSHAQSKSPIRQTAMSY----DGSTILSCCEDGAIWRWD 290 (294)
Q Consensus 252 ~~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~dg~i~vw~ 290 (294)
+...++ ..|+++.+-. +.++++.| .+..|.=||
T Consensus 87 Fyke~~-----DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd 123 (136)
T PF14781_consen 87 FYKEVP-----DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFD 123 (136)
T ss_pred hhhhCc-----cceeEEEEEecCCCCCcEEEEC-ceEEEEEeC
Confidence 555444 4577776632 23445544 344444444
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.21 E-value=0.76 Score=32.99 Aligned_cols=122 Identities=14% Similarity=0.169 Sum_probs=63.9
Q ss_pred ceEEEeeCCCcEEEEEcCC--CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC------cEEEE-eccccccccc
Q 022590 67 SLVVSASKDESVRLWNVQT--GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIW-SMKEFWTYVE 137 (294)
Q Consensus 67 ~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg------~i~~w-d~~~~~~~~~ 137 (294)
+.|+.+...+.|.+|++.+ .+....|. .-+.|..+.++. .|++++|--.+. .+|+| +.+.......
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 3444445667899999883 34555665 558899999998 889999874432 44553 2332110000
Q ss_pred c-ceeecC---CCCCCCCceeeeceEEe--ecCCCceeecceecceEEEeeCCCeEEEecCCCC
Q 022590 138 K-SFTWTD---LPSKFPTKYVQFPVFIA--SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMK 195 (294)
Q Consensus 138 ~-~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~ 195 (294)
. ....-+ .+........+..+..+ ..++..|.|....|++++.+ ++.+.+|.+...
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 0 000111 11111111111112222 23444555555568877753 568888887654
No 429
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.16 E-value=0.53 Score=30.89 Aligned_cols=100 Identities=8% Similarity=0.071 Sum_probs=64.6
Q ss_pred EEEEeecCCeEEEEEcCCcc--------ccceecccCcceEEEEeCCC----CCceEEEeeCCCcEEEEEcCCCceEEEe
Q 022590 25 FLVAGGINGIIRVIDVSNEK--------LHKSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQTGICILIF 92 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~--------~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 92 (294)
.|++++.-|.|.|++..... .++.+. -...|++|+-.+. +...|+.|+. .++..||+....-+..-
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYK 89 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhh
Confidence 78888899999999876432 233333 4567888765442 3556777766 67889999877655332
Q ss_pred eccCCCCCceeEEEEec---CCCceEEeeecCCcEEEEeccc
Q 022590 93 AGAGGHRNEVLSVDFHP---SDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 93 ~~~~~~~~~v~~l~~~~---~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
.-.+.|+++.+-. .... ++..+.+..|.-||...
T Consensus 90 ----e~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 90 ----EVPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEG 126 (136)
T ss_pred ----hCccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCC
Confidence 2556788887632 1234 44444467788777665
No 430
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.10 E-value=0.27 Score=35.87 Aligned_cols=68 Identities=18% Similarity=0.415 Sum_probs=48.1
Q ss_pred EcccCCcceEEEEcCCCeEEEEeccCCCceeee-ecc---cc------ccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590 222 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RLS---HA------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291 (294)
Q Consensus 222 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~---~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 291 (294)
+...+ .++++-+.+|.+++||+.+.+..... .+. .. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 18 l~~~~--~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG--SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCC--CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 44445 57899999999999999987643222 111 10 2446789999999998777764 578899886
Q ss_pred C
Q 022590 292 I 292 (294)
Q Consensus 292 ~ 292 (294)
+
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 4
No 431
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.93 E-value=0.81 Score=34.80 Aligned_cols=98 Identities=9% Similarity=0.132 Sum_probs=62.4
Q ss_pred CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee------CCCcEEEEEcCCCceEEEeec-c-CCCCCcee
Q 022590 32 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAG-A-GGHRNEVL 103 (294)
Q Consensus 32 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~-~-~~~~~~v~ 103 (294)
-..|++||..+.+-...-.+-.+.|++|.|.. +.+++++|. ....+..||..+..- ..+.. . ..-.++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEE
Confidence 35699999887766555555678999999986 677777774 456788899866543 23331 0 12347888
Q ss_pred EEEEecCCCceEE-eee-cCC--cEEEEeccc
Q 022590 104 SVDFHPSDIYRIA-SCG-MDN--TVKIWSMKE 131 (294)
Q Consensus 104 ~l~~~~~~~~~l~-~~~-~dg--~i~~wd~~~ 131 (294)
.+.+...+...+. .|. .+| .|..||=.+
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 8888654544344 443 233 466665544
No 432
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.92 E-value=2.5 Score=37.37 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=49.1
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcc--------eEEEEeCC---------------CCCceEEEeeCCCcEEEE
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDS--------INEIRTQP---------------LKPSLVVSASKDESVRLW 81 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~--------v~~~~~~~---------------~~~~~l~s~~~dg~i~vw 81 (294)
.++.++.++.|.-.|..+|+.+-++...... ...+++.. .....++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5777888899999999999887766532211 12233321 023478888999999999
Q ss_pred EcCCCceEEEee
Q 022590 82 NVQTGICILIFA 93 (294)
Q Consensus 82 d~~~~~~~~~~~ 93 (294)
|.++|+....+.
T Consensus 276 DA~TGk~~W~fg 287 (764)
T TIGR03074 276 DADTGKLCEDFG 287 (764)
T ss_pred ECCCCCEEEEec
Confidence 999999887764
No 433
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=1.2 Score=33.66 Aligned_cols=158 Identities=9% Similarity=0.047 Sum_probs=95.9
Q ss_pred cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccc
Q 022590 54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133 (294)
Q Consensus 54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 133 (294)
+-+..+.++. ++...+..+.-++|.|+.+.........+ ...+.-.++.. ++++..++..|.-..+.|+.+..
T Consensus 87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~l-nt~gyaygv~v---sGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFL-NTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccc-cCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC
Confidence 4456666754 56777777777999999877655443321 12244455555 56778777767778888988732
Q ss_pred cccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC
Q 022590 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 213 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 213 (294)
. .............-..+..+|++-..+..|+-+.+-|+..... ...+.....
T Consensus 160 s--------------------P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~s------Pvli~~~n~- 212 (370)
T COG5276 160 S--------------------PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHS------PVLIGSYNT- 212 (370)
T ss_pred C--------------------ceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCC------CeEEEEEec-
Confidence 1 0111122222222345666799999999999999999988753 223333332
Q ss_pred CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC
Q 022590 214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 249 (294)
Q Consensus 214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 249 (294)
...+.++..+++. .+++... . -+.+-|....+
T Consensus 213 g~g~~sv~vsdnr--~y~vvy~-e-gvlivd~s~~s 244 (370)
T COG5276 213 GPGTYSVSVSDNR--AYLVVYD-E-GVLIVDVSGPS 244 (370)
T ss_pred CCceEEEEecCCe--eEEEEcc-c-ceEEEecCCCC
Confidence 3367777777765 3444433 2 36666666554
No 434
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=1.3 Score=33.35 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=88.1
Q ss_pred CceeEEEEecCCCceEEeeecCCc-EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceE
Q 022590 100 NEVLSVDFHPSDIYRIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFI 178 (294)
Q Consensus 100 ~~v~~l~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 178 (294)
..-..|+|+|..+.-++.+-.-|+ ..++|........... ...-..+.+|.- .+-+|.+|
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~---------------s~~~RHfyGHGv----fs~dG~~L 128 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV---------------SQEGRHFYGHGV----FSPDGRLL 128 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe---------------cccCceeecccc----cCCCCcEE
Confidence 344568888877777777776665 5678887632211000 001112223321 12237777
Q ss_pred EEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-----------------
Q 022590 179 LSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR----------------- 236 (294)
Q Consensus 179 ~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~----------------- 236 (294)
...-.| |.|-+||.+.+- +.+.+++.+.-....+.+.+|+. .++....
T Consensus 129 YATEndfd~~rGViGvYd~r~~f--------qrvgE~~t~GiGpHev~lm~DGr--tlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 129 YATENDFDPNRGVIGVYDAREGF--------QRVGEFSTHGIGPHEVTLMADGR--TLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred EeecCCCCCCCceEEEEeccccc--------ceecccccCCcCcceeEEecCCc--EEEEeCCceecccccCccccchhh
Confidence 765443 789999998543 35667777777777889999994 4544321
Q ss_pred -CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590 237 -EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 280 (294)
Q Consensus 237 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 280 (294)
.-.+.+.|..+++.+....++...+...|+.++..+||..++.+
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 12233444444443333444433455678999999998776654
No 435
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.72 E-value=2.9 Score=37.12 Aligned_cols=214 Identities=11% Similarity=0.079 Sum_probs=109.7
Q ss_pred EEEEeecCCeEEEEEcCCccccce--------ecccCcceEEEEeC--CCCCceEEEeeCC---CcEEEEEcCC--C---
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKS--------FVGHGDSINEIRTQ--PLKPSLVVSASKD---ESVRLWNVQT--G--- 86 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~--------~~~h~~~v~~~~~~--~~~~~~l~s~~~d---g~i~vwd~~~--~--- 86 (294)
-+++-..+|.+++|-.+....... +..-...|+..++. . +++.++.++.+ +.|++|.+.- +
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~-~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSD-NGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecC-CCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 567777889999997733222111 11233456655554 4 55455444444 7888886431 1
Q ss_pred -----c--eEEEeec---c--C--C-----------CCCceeEEEEec------CCCceEEeeec----CCcEEEEeccc
Q 022590 87 -----I--CILIFAG---A--G--G-----------HRNEVLSVDFHP------SDIYRIASCGM----DNTVKIWSMKE 131 (294)
Q Consensus 87 -----~--~~~~~~~---~--~--~-----------~~~~v~~l~~~~------~~~~~l~~~~~----dg~i~~wd~~~ 131 (294)
+ +...+.. . . . .-..++.+.|-+ .....+++.+. ...|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0 0011110 0 0 0 113567777765 12344554432 34689999988
Q ss_pred cccccccceeecCCCCCC---CCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC----C
Q 022590 132 FWTYVEKSFTWTDLPSKF---PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE----G 202 (294)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~----~ 202 (294)
........+...+..... ...........-......|.++... +..++....||+|.++|..+.+..... .
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 654444333322211111 0111111111112233456666554 778999999999999999887543322 1
Q ss_pred Cceeeeeee-----cC-CCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590 203 TADILQKYP-----VP-ECDIWFIKFSCDFHYNAAAIGNREGKIF 241 (294)
Q Consensus 203 ~~~~~~~~~-----~~-~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 241 (294)
....+.... .+ ......++|||.+ ..++.-..+|.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~--c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTM--CSLVQIDEDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECccc--ceEEEEecCCCce
Confidence 211111111 11 1144568899998 4677777788765
No 436
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.65 E-value=0.2 Score=25.17 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecc
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 51 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 51 (294)
|+++.++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56763455555688999999988887777664
No 437
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.63 E-value=1.8 Score=34.38 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=47.1
Q ss_pred cCCCceEEEEeecCC--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC
Q 022590 19 NVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 96 (294)
Q Consensus 19 ~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 96 (294)
.++|+.+|+++..|| .+.+.|+.+++..+.-.+.........++| +.+.++-...+..|+-.|+.+.+....+..
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~-- 120 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYEV-- 120 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE---
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEEC--
Confidence 388986777666565 567778888877655443333344566778 556665555557888889999887666652
Q ss_pred CCCCceeEEEEe
Q 022590 97 GHRNEVLSVDFH 108 (294)
Q Consensus 97 ~~~~~v~~l~~~ 108 (294)
....+-...|.
T Consensus 121 -p~~~~g~gt~v 131 (386)
T PF14583_consen 121 -PDDWKGYGTWV 131 (386)
T ss_dssp --TTEEEEEEEE
T ss_pred -Cccccccccee
Confidence 45555456664
No 438
>PLN02153 epithiospecifier protein
Probab=94.51 E-value=1.9 Score=34.10 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=32.3
Q ss_pred CCceEEEEeecC-------CeEEEEEcCCccccce--ecc-cCc---ceEEEEeCCCCCceEEEeeCC-----CcEEEEE
Q 022590 21 DGIPFLVAGGIN-------GIIRVIDVSNEKLHKS--FVG-HGD---SINEIRTQPLKPSLVVSASKD-----ESVRLWN 82 (294)
Q Consensus 21 ~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~--~~~-h~~---~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd 82 (294)
+++ +.+.|+.+ ..+.+||..+.+-... ... ... ....+.+ ++.+++.|+.+ ..+.+||
T Consensus 32 ~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd 107 (341)
T PLN02153 32 GDK-LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYD 107 (341)
T ss_pred CCE-EEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEE
Confidence 344 66767653 2577888776532211 100 000 1122222 45677777753 2467788
Q ss_pred cCCCc
Q 022590 83 VQTGI 87 (294)
Q Consensus 83 ~~~~~ 87 (294)
+.+.+
T Consensus 108 ~~t~~ 112 (341)
T PLN02153 108 TVKNE 112 (341)
T ss_pred CCCCE
Confidence 87654
No 439
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=1.6 Score=39.85 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=24.9
Q ss_pred ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC
Q 022590 9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN 42 (294)
Q Consensus 9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 42 (294)
-+....+++++|... ++|.|+..|.|++|-...
T Consensus 34 ~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCcceeeccccc-eEEEEEecccEEEecccc
Confidence 333455566668887 999999999999997543
No 440
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.42 E-value=3 Score=36.54 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=51.3
Q ss_pred CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC----------CCc-eeeeecc------ccccCCCeEEEEEccC--
Q 022590 213 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS----------SPP-VLIARLS------HAQSKSPIRQTAMSYD-- 273 (294)
Q Consensus 213 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~-~~~~~~~------~~~~~~~v~~~~~s~~-- 273 (294)
..-.|..+.++|+| .+++..+..| |.|..+.. ++. ....... .......|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~g--~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 83 PLFEVHQISLNPTG--SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred CceeEEEEEECCCC--CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 34568889999999 4677766655 44444421 111 1111111 1234467999999996
Q ss_pred -CCEEEEeccCCcEEEEecCC
Q 022590 274 -GSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 274 -~~~l~s~~~dg~i~vw~~~~ 293 (294)
+..|+.-..|+++++||+..
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCeEEEEecCCEEEEEecCC
Confidence 57899999999999999863
No 441
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.33 E-value=2.5 Score=34.75 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=86.6
Q ss_pred eEEEEeCCCCCceEE-EeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC-------CCceEEeeecCCcEEEE
Q 022590 56 INEIRTQPLKPSLVV-SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-------DIYRIASCGMDNTVKIW 127 (294)
Q Consensus 56 v~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------~~~~l~~~~~dg~i~~w 127 (294)
+.-+..+.++..+|+ .|+....+.-.|++.|+.+..... |... -+.|.|. ....| +|-.+..|.-.
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~---~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrI 542 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDL---KDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRI 542 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeec---CCcc--eeecCCchhHHhcCccceE-EeecccceEEe
Confidence 334444444555554 455566777789999999988873 5443 5677772 12333 34445556555
Q ss_pred eccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce------ecceEEEeeCCCeEEEecCCCCCCCCCC
Q 022590 128 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW------LGDFILSKSVDNEIVLWEPKMKEQSPGE 201 (294)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 201 (294)
|.+-... ...........+.-.| ...++++++..|-|++||--...
T Consensus 543 DPR~~gN-----------------------Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r----- 594 (776)
T COG5167 543 DPRARGN-----------------------KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR----- 594 (776)
T ss_pred cccccCC-----------------------ceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcch-----
Confidence 6664210 0011111222222222 26799999999999999964322
Q ss_pred CCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590 202 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 246 (294)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 246 (294)
....++.-...|..+..+.+|+ ++++.+ ...+.+-|++
T Consensus 595 ----AKtalP~lG~aIk~idvta~Gk--~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 595 ----AKTALPGLGDAIKHIDVTANGK--HILATC-KNYLLLTDVP 632 (776)
T ss_pred ----hhhcCcccccceeeeEeecCCc--EEEEee-cceEEEEecc
Confidence 2333455566788888888885 444333 4567777764
No 442
>PRK13684 Ycf48-like protein; Provisional
Probab=94.12 E-value=2.3 Score=33.53 Aligned_cols=110 Identities=10% Similarity=0.060 Sum_probs=59.6
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEE-EEcCCcccccee-cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRV-IDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i-w~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 85 (294)
...++++.+. |++. +++++ ..|.+.. ++ ..++.-... ..-...++++.+.+ ++..++.+ ..|.+++=..+.
T Consensus 172 ~g~~~~i~~~--~~g~-~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRS--PDGK-YVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEEC--CCCe-EEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCC
Confidence 4567788775 7775 55444 4565543 22 222211112 22346789999999 77666654 557765433444
Q ss_pred CceEEEeecc-CCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590 86 GICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126 (294)
Q Consensus 86 ~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~ 126 (294)
+..-...... ......+.++.+.| ++..+ .++.+|.+..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~-~~G~~G~v~~ 284 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRT-PGEIW-AGGGNGTLLV 284 (334)
T ss_pred CCccccccCCccccccceeeEEEcC-CCCEE-EEcCCCeEEE
Confidence 4443322211 01223578899988 66644 4555675553
No 443
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.10 E-value=2 Score=32.79 Aligned_cols=239 Identities=12% Similarity=0.087 Sum_probs=123.9
Q ss_pred EEEEEeecCCCceEEEEeecCCeEEEEEcCC------c-cccceecc-----cCcceEEEEeCCCC-----------Cce
Q 022590 12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSN------E-KLHKSFVG-----HGDSINEIRTQPLK-----------PSL 68 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~-~~~~~~~~-----h~~~v~~~~~~~~~-----------~~~ 68 (294)
+.|+++ |.+. +-++....+...+||... . .++-++.. .....+.+.|+... ...
T Consensus 26 WGia~~--p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 26 WGLSYR--PGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ceeEec--CCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 456665 8886 777777788999999861 1 12222321 23457888887521 123
Q ss_pred EEEeeCCCcEEEEEcCCCce-----EEEeeccCCCCCce-eEEEEecC-CCceE-EeeecCCcEEEEeccccccccccce
Q 022590 69 VVSASKDESVRLWNVQTGIC-----ILIFAGAGGHRNEV-LSVDFHPS-DIYRI-ASCGMDNTVKIWSMKEFWTYVEKSF 140 (294)
Q Consensus 69 l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~v-~~l~~~~~-~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~ 140 (294)
++.+++||+|.-|...-+.. ...+.. .....| ..+++.+. .+.+| ++=-..++|.|+|-.-........+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~--s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDA--SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEcc--CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 67789999999998643322 122221 122333 34555432 23444 4445688999998665322222222
Q ss_pred eecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec--CCCC
Q 022590 141 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECD 216 (294)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~ 216 (294)
.....+..+..-. +..+.+ .-.|+-..-+ ...=+.+..-|.|.+||+... .++++.. .-..
T Consensus 181 ~DP~iPagyAPFn----Iqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----------l~~r~as~g~LNa 245 (336)
T TIGR03118 181 IDPALPAGYAPFN----VQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----------LLRRVASSGRLNA 245 (336)
T ss_pred cCCCCCCCCCCcc----eEEECC-eEEEEEEecCCcccccccCCCcceEEEEcCCCc----------EEEEeccCCcccC
Confidence 2222222211111 111000 0000000001 122233445578999998643 4444432 2245
Q ss_pred eeEEEEcccC----CcceEEEEcCCCeEEEEeccCCCceeeeeccc----cccCCCeEEEEEcc
Q 022590 217 IWFIKFSCDF----HYNAAAIGNREGKIFVWELQSSPPVLIARLSH----AQSKSPIRQTAMSY 272 (294)
Q Consensus 217 i~~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~v~~~~~s~ 272 (294)
.+.|+..|.. .+.+|+---.||+|..||..+++.+ -.+.. .--...++.++|..
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~--g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL--GQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee--eeecCCCCCeEEecCeEEeeeCC
Confidence 6677776642 1256777678999999999887632 22221 11123467888865
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=2.8 Score=38.57 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=30.6
Q ss_pred ccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590 260 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 260 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 293 (294)
.+..+|..++.....+.|.+-++.|.|.+|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5567999999999999999999999999999864
No 445
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.01 E-value=2.5 Score=33.61 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=61.1
Q ss_pred CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCC-CCCceEEEee----------------------CCC
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP-LKPSLVVSAS----------------------KDE 76 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~----------------------~dg 76 (294)
|+++ .++-......|+-.|+++.+....+......+-...|.. .++.+++-.- ...
T Consensus 90 ~~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~ 168 (386)
T PF14583_consen 90 PDDR-ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC 168 (386)
T ss_dssp TTSS-EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred cCCC-eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence 6666 555444556788889988877666666666665566642 2444443321 112
Q ss_pred cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec---CCc-EEEEeccc
Q 022590 77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNT-VKIWSMKE 131 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~---dg~-i~~wd~~~ 131 (294)
.|.-.|+.+|+....+. -...+..+.|+|.++.+|+-|-+ +.. -|||-++.
T Consensus 169 ~i~~idl~tG~~~~v~~----~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE----DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp EEEEEETTT--EEEEEE----ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred eEEEEECCCCceeEEEe----cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 35556777877666665 56678899999988887777643 222 36776665
No 446
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.75 E-value=2.8 Score=33.23 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=23.4
Q ss_pred eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 284 (294)
.+.+||..+.+......++.. .-...+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~----~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQG----LAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCC----ceeeEEEEcCCEEEEEeccCC
Confidence 467888887764433333211 112223345778888887653
No 447
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.36 E-value=0.58 Score=39.71 Aligned_cols=69 Identities=19% Similarity=0.400 Sum_probs=42.3
Q ss_pred EEEEeecCCeEEEEEcCC----cccc-----------ceecc-----------cCcceEEEEeCC---CCCceEEEeeCC
Q 022590 25 FLVAGGINGIIRVIDVSN----EKLH-----------KSFVG-----------HGDSINEIRTQP---LKPSLVVSASKD 75 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~----~~~~-----------~~~~~-----------h~~~v~~~~~~~---~~~~~l~s~~~d 75 (294)
.++.+..||.+....... +... +.+.+ ....+..++.++ .+..+|++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 688888898888877654 1110 01110 122344455544 256789999999
Q ss_pred CcEEEEEcCCCceEEEee
Q 022590 76 ESVRLWNVQTGICILIFA 93 (294)
Q Consensus 76 g~i~vwd~~~~~~~~~~~ 93 (294)
+++|+||+.+++++....
T Consensus 240 ~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 240 HTLRIWSLETGQCLATID 257 (547)
T ss_dssp SEEEEEETTTTCEEEEEE
T ss_pred CeEEEEECCCCeEEEEec
Confidence 999999999999976654
No 448
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.32 E-value=4 Score=33.67 Aligned_cols=143 Identities=15% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC-------CCceEEEeeCCCcEEEEEcCC-CceEEEe
Q 022590 21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-------KPSLVVSASKDESVRLWNVQT-GICILIF 92 (294)
Q Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-------~~~~l~s~~~dg~i~vwd~~~-~~~~~~~ 92 (294)
+..-++..|.....++-.|++-|+.+..+..|... -+.|.|. +.+.|+ |-.+..|.-.|.+- |..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 33424455666677888888889999988877665 5677773 123344 44445554456543 3222222
Q ss_pred eccCCCCCceeEEEEec---CCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCcee
Q 022590 93 AGAGGHRNEVLSVDFHP---SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 169 (294)
Q Consensus 93 ~~~~~~~~~v~~l~~~~---~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 169 (294)
. ....++.-.|+. ....++|+++..|-|++||--. ......+.+-...|.
T Consensus 555 e----sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-----------------------~rAKtalP~lG~aIk 607 (776)
T COG5167 555 E----SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-----------------------KRAKTALPGLGDAIK 607 (776)
T ss_pred e----ehhccccccccccccccCceEEEecCCCceeeehhhc-----------------------chhhhcCccccccee
Confidence 2 222233333322 1456799999999999999654 222233444445555
Q ss_pred eccee--cceEEEeeCCCeEEEecCCC
Q 022590 170 CNRWL--GDFILSKSVDNEIVLWEPKM 194 (294)
Q Consensus 170 ~~~~~--~~~l~~~~~d~~i~iwd~~~ 194 (294)
.+... |.++++.+ ...+.+-|++-
T Consensus 608 ~idvta~Gk~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 608 HIDVTANGKHILATC-KNYLLLTDVPI 633 (776)
T ss_pred eeEeecCCcEEEEee-cceEEEEeccc
Confidence 55543 66666544 45677777754
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.23 E-value=1.3 Score=31.09 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=26.7
Q ss_pred CCceeEEEEecC-----CCceEEeeecCCcEEEEeccc
Q 022590 99 RNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 99 ~~~v~~l~~~~~-----~~~~l~~~~~dg~i~~wd~~~ 131 (294)
...+..++|+|. .+-+|++...++.|.+|....
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 347999999993 246789999999999998765
No 450
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.20 E-value=4.7 Score=34.15 Aligned_cols=201 Identities=9% Similarity=-0.003 Sum_probs=104.2
Q ss_pred ceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC-Cce-------eEEEEecCCCceEEeeecCCcEEEEecccccccccc
Q 022590 67 SLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NEV-------LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 138 (294)
Q Consensus 67 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v-------~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 138 (294)
..++.++.++.|.-.|..+|+.+-.+....... ... ..+++. + ..++.++.|+.+.-.|.++++..-..
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~-~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--D-GKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--C-CEEEEEcCCCEEEEEECCCCCEEeec
Confidence 466777778899999999999888765311000 010 112232 2 35677788999999999886543322
Q ss_pred ceeecCCCCCCCCceeeeceEEeecCCCceee-cceecceEEEee------CCCeEEEecCCCCCCCCCCCCceee----
Q 022590 139 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLGDFILSKS------VDNEIVLWEPKMKEQSPGEGTADIL---- 207 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~---- 207 (294)
...... ....+.+ -...++.++++. .+|.|.-+|.++++..........-
T Consensus 147 ~~~~~~-------------------~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~ 207 (527)
T TIGR03075 147 KNGDYK-------------------AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL 207 (527)
T ss_pred cccccc-------------------ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence 210000 0000110 011134455543 2678888888888653221111000
Q ss_pred --------e----------eeecCCCCe-eEEEEcccCCcceEEEEcCC-----C-----------eEEEEeccCCCcee
Q 022590 208 --------Q----------KYPVPECDI-WFIKFSCDFHYNAAAIGNRE-----G-----------KIFVWELQSSPPVL 252 (294)
Q Consensus 208 --------~----------~~~~~~~~i-~~~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~ 252 (294)
. ........+ ..+++.+.. .+++.+..+ + .|.-.|+++++.+.
T Consensus 208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~--~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W 285 (527)
T TIGR03075 208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET--NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKW 285 (527)
T ss_pred cccccccccccccCCCCCCccccCCCCccCceeEcCCC--CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEE
Confidence 0 000001111 123444444 345544421 2 57777888887665
Q ss_pred eeeccccccC-------CCeEEEEEccCCC---EEEEeccCCcEEEEecCC
Q 022590 253 IARLSHAQSK-------SPIRQTAMSYDGS---TILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 253 ~~~~~~~~~~-------~~v~~~~~s~~~~---~l~s~~~dg~i~vw~~~~ 293 (294)
..... .|. .+..-+.+..+|+ .++.+..+|.+++.|.++
T Consensus 286 ~~Q~~--~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t 334 (527)
T TIGR03075 286 HYQTT--PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN 334 (527)
T ss_pred eeeCC--CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence 55443 221 1112233334665 788999999999999764
No 451
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.00 E-value=3.6 Score=32.26 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=31.1
Q ss_pred CCceEEEeeCCC-----cEEEEEcCCCce---EEEeeccCCCCCceeEEEEecCCCceEEeeecC-----CcEEEEeccc
Q 022590 65 KPSLVVSASKDE-----SVRLWNVQTGIC---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKE 131 (294)
Q Consensus 65 ~~~~l~s~~~dg-----~i~vwd~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-----g~i~~wd~~~ 131 (294)
++.+++.|+.++ .+..+|+.+.+. ...+..+ .....-.+++.. ++.+++.|+.. ..+..||+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~l-p~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNL-PFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCC-CcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCC
Confidence 446777777543 456667766543 1222211 011111222332 56667777642 3466777665
No 452
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.87 E-value=3.1 Score=31.27 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE-EcCCCce
Q 022590 10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW-NVQTGIC 88 (294)
Q Consensus 10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw-d~~~~~~ 88 (294)
.+.+.+++ ++|+.+.+....++.-.||-...+.....+. ....++.-.|++ ++...+....+...+++ +...+..
T Consensus 25 ~~~s~AvS--~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVS--PDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEEC--CCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Q ss_pred EEEeeccCCCCCceeEEEEecCCCceEEeee---cCCcEEEEeccccccccccceeecCCCCCCC-CceeeeceEEeecC
Q 022590 89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP-TKYVQFPVFIASVH 164 (294)
Q Consensus 89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (294)
...--....-...|..+.++| ++..++... .++.|.+=-+.. .... ......+.......
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r---------------~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVR---------------DGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEe---------------CCCCCcceeccceEecccc
Q ss_pred CCceeeccee-cceEEEeeCCC
Q 022590 165 SNYVDCNRWL-GDFILSKSVDN 185 (294)
Q Consensus 165 ~~~i~~~~~~-~~~l~~~~~d~ 185 (294)
...+..+.|. +..|++.....
T Consensus 165 ~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 165 LSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred cCcceeeeecCCCEEEEEeCCC
No 453
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.63 E-value=3.7 Score=31.46 Aligned_cols=214 Identities=14% Similarity=0.144 Sum_probs=111.3
Q ss_pred ceEEEEeCCCCCceEEEeeCCCcEEEEEcC------CCce-EEEeeccCC--CCCceeEEEEecCC-----------Cce
Q 022590 55 SINEIRTQPLKPSLVVSASKDESVRLWNVQ------TGIC-ILIFAGAGG--HRNEVLSVDFHPSD-----------IYR 114 (294)
Q Consensus 55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~------~~~~-~~~~~~~~~--~~~~v~~l~~~~~~-----------~~~ 114 (294)
.-+.|+++| .+.+.++....+...+||.. ..+. +..+....+ .....+.+.|+... ...
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 347899999 77888888888999999986 2222 222221111 23467888887521 123
Q ss_pred EEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC-CCce-eeccee----cceEEEe-eCCCeE
Q 022590 115 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYV-DCNRWL----GDFILSK-SVDNEI 187 (294)
Q Consensus 115 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i-~~~~~~----~~~l~~~-~~d~~i 187 (294)
++.+++||+|.-|...-....+.. ........ ...| ..++.- +++|..+ -..++|
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~------------------~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTR------------------AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRI 164 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccc------------------cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCce
Confidence 677789999999985432110000 00111100 1111 122221 3444443 457889
Q ss_pred EEecCCCCCCCCCCC--Cceee-----eeeecCCCC--eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc
Q 022590 188 VLWEPKMKEQSPGEG--TADIL-----QKYPVPECD--IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 258 (294)
Q Consensus 188 ~iwd~~~~~~~~~~~--~~~~~-----~~~~~~~~~--i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (294)
.+||-.-........ ...+. ..+..-.+. |+...-.++. ..=+.|..-|.|-+||+... .+.++..
T Consensus 165 DVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~--~d~v~G~G~G~VdvFd~~G~---l~~r~as 239 (336)
T TIGR03118 165 DVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR--NDEVAGAGLGYVNVFTLNGQ---LLRRVAS 239 (336)
T ss_pred EEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc--cccccCCCcceEEEEcCCCc---EEEEecc
Confidence 888865332110000 00000 000000011 1111111222 12234555688999998775 5555654
Q ss_pred cccCCCeEEEEEcc------CCCEEEEeccCCcEEEEecC
Q 022590 259 AQSKSPIRQTAMSY------DGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 259 ~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~vw~~~ 292 (294)
.+.-..-..|+..| .|.+|+---.||+|..||..
T Consensus 240 ~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 240 SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence 45555667788866 46677766679999999965
No 454
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.58 E-value=4.8 Score=32.64 Aligned_cols=173 Identities=11% Similarity=0.094 Sum_probs=74.9
Q ss_pred cCCCceEEEEeec------CCeEEEEEcCCccccceecccC---cceEEEEeCCCCCceEEEee----------------
Q 022590 19 NVDGIPFLVAGGI------NGIIRVIDVSNEKLHKSFVGHG---DSINEIRTQPLKPSLVVSAS---------------- 73 (294)
Q Consensus 19 ~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~---------------- 73 (294)
-|+|+ +++++-. -|-+.++|-++.+......... .--..+-|.| ..+.++|..
T Consensus 138 lp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 138 LPDGR-IMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp -SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTH
T ss_pred cCCcc-EEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHh
Confidence 37887 6666432 2567888877766665554322 2235566777 556666642
Q ss_pred ----CCCcEEEEEcCCCceEEEeeccCCCC-CceeEEEEec--CCCceEEeeecCCcEEEEec-cccccccccceeecCC
Q 022590 74 ----KDESVRLWNVQTGICILIFAGAGGHR-NEVLSVDFHP--SDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTWTDL 145 (294)
Q Consensus 74 ----~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~~ 145 (294)
...++.+||+.+.+.++.+.. +.. ..+..+.|.. ....-++.+...++|..|-- ..+.-..+..++....
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idL--g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDL--GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES---TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred hcccccCeEEEEECCCCcEeeEEec--CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 345799999999999999875 222 3466777765 22334555555556655544 3222222222221110
Q ss_pred CCCCCCceeeeceEEeecCCCceeeccee--cceEEEee-CCCeEEEecCCCCCC
Q 022590 146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQ 197 (294)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~ 197 (294)
+.. .-.....+..+..-+.-|+.+..+ .++|..+. ..|.|+.||+.....
T Consensus 294 ~v~--~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 294 KVE--GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp E----SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ccC--cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 000 000000000011113345555554 56665544 689999999988754
No 455
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.42 E-value=4.1 Score=33.40 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=21.7
Q ss_pred Cceeeccee--cceEEEeeCCCeEEEecCCC
Q 022590 166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKM 194 (294)
Q Consensus 166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~ 194 (294)
..|.++..+ .+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 347777776 67899999999999999975
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.03 E-value=0.85 Score=22.77 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=21.8
Q ss_pred CCc-eEEEeeCCCcEEEEEcCCCceEEEee
Q 022590 65 KPS-LVVSASKDESVRLWNVQTGICILIFA 93 (294)
Q Consensus 65 ~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 93 (294)
+++ ++++...+++|.++|..+++.+..+.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 344 45555568899999999888888776
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.73 E-value=5.3 Score=31.32 Aligned_cols=100 Identities=8% Similarity=0.015 Sum_probs=45.2
Q ss_pred ecceEEEeeC-----CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC----eEEEEe
Q 022590 174 LGDFILSKSV-----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG----KIFVWE 244 (294)
Q Consensus 174 ~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg----~i~i~d 244 (294)
.+.+.+.|+. ...+..||+.+.+- ..+..++.. ......+...++ .+.+.|+.++ .+..||
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W-------~~~~~~p~~-~r~~~~~~~~~~--~iYv~GG~~~~~~~~~~~yd 192 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEW-------FELPDFPGE-PRVQPVCVKLQN--ELYVFGGGSNIAYTDGYKYS 192 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCe-------eECCCCCCC-CCCcceEEEECC--EEEEEcCCCCccccceEEEe
Confidence 3556666654 24578888876531 122111111 111122223344 4566666553 356888
Q ss_pred ccCCCceeeeeccccccCCCe-EEE-EEccCCCEEEEeccC
Q 022590 245 LQSSPPVLIARLSHAQSKSPI-RQT-AMSYDGSTILSCCED 283 (294)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~v-~~~-~~s~~~~~l~s~~~d 283 (294)
..+.+................ ... +...++++++.|+.+
T Consensus 193 ~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 193 PKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred cCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 887754333221100000000 111 122356788888866
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.48 E-value=7.3 Score=32.37 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=48.1
Q ss_pred CeeEEEEcccCCcceEEEEcCCCeEEEEe---------ccCCCceeeeecc-------ccccCCCeEEEEEccCC---CE
Q 022590 216 DIWFIKFSCDFHYNAAAIGNREGKIFVWE---------LQSSPPVLIARLS-------HAQSKSPIRQTAMSYDG---ST 276 (294)
Q Consensus 216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d---------~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~---~~ 276 (294)
.|..+..++.| ..++-.+.+|.+.++= ++.+++....+.. .....-.+..++|+|+. ..
T Consensus 105 eV~~vl~s~~G--S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTG--SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCC--ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 46677888888 4677777788655443 1233332222211 01122357788999975 67
Q ss_pred EEEeccCCcEEEEecCC
Q 022590 277 ILSCCEDGAIWRWDAIP 293 (294)
Q Consensus 277 l~s~~~dg~i~vw~~~~ 293 (294)
|..-+.|..|++||+..
T Consensus 183 L~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEEecCcEEEEEecCC
Confidence 88888899999999864
No 459
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.35 E-value=10 Score=33.86 Aligned_cols=71 Identities=17% Similarity=0.033 Sum_probs=47.6
Q ss_pred CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee-----------ecccc----ccCCCeEEEEEccCCCEEEE
Q 022590 215 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-----------RLSHA----QSKSPIRQTAMSYDGSTILS 279 (294)
Q Consensus 215 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~~~~----~~~~~v~~~~~s~~~~~l~s 279 (294)
..|.++....-+ .+++....||.|.++|-.+.+..... .+... ....++..++|||.+.-++.
T Consensus 260 ~~V~si~~~~~~--~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELD--IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CeEEEEEecccC--cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 445556555555 58899999999999998776433222 00000 11124556899999999999
Q ss_pred eccCCcEE
Q 022590 280 CCEDGAIW 287 (294)
Q Consensus 280 ~~~dg~i~ 287 (294)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 99998855
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.17 E-value=1.6 Score=37.20 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=38.1
Q ss_pred ceEEEEcCCCeEEEEeccC---CCceeeee-ccc------------------cccCCCeEEEEEcc----CCCEEEEecc
Q 022590 229 NAAAIGNREGKIFVWELQS---SPPVLIAR-LSH------------------AQSKSPIRQTAMSY----DGSTILSCCE 282 (294)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~---~~~~~~~~-~~~------------------~~~~~~v~~~~~s~----~~~~l~s~~~ 282 (294)
..++.+..||.+....... ........ ... .........+++++ +..+|++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 4677788888888888765 11111111 100 01124466677777 7789999999
Q ss_pred CCcEEEEecCC
Q 022590 283 DGAIWRWDAIP 293 (294)
Q Consensus 283 dg~i~vw~~~~ 293 (294)
|+.+|+||+++
T Consensus 239 D~~LRiW~l~t 249 (547)
T PF11715_consen 239 DHTLRIWSLET 249 (547)
T ss_dssp TSEEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 99999999975
No 461
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.14 E-value=0.062 Score=43.07 Aligned_cols=103 Identities=18% Similarity=0.290 Sum_probs=70.7
Q ss_pred EEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590 13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL 90 (294)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 90 (294)
.++|. .+|...++.+-..+.+.+|++.+....+.-. .|.... +.|++ ....++.+...|.+.|++..+.+.+.
T Consensus 79 dm~wD--kegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~ii 153 (615)
T KOG2247|consen 79 DMAWD--KEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRII 153 (615)
T ss_pred hhhhc--cccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhh
Confidence 45565 5676567777888999999987653322111 133322 78999 88888999999999999987776554
Q ss_pred EeeccCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590 91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK 125 (294)
Q Consensus 91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~ 125 (294)
..- .|...++++++.+ .+. .+.++.|..+.
T Consensus 154 v~G---kh~RRgtq~av~l-Ed~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 154 VMG---KHQRRGTQIAVTL-EDY-VILCDCDNTLS 183 (615)
T ss_pred hhc---ccccceeEEEecc-cce-eeecCcHHHHH
Confidence 443 3899999999998 544 55555554443
No 462
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.97 E-value=7.8 Score=31.80 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.9
Q ss_pred CCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590 263 SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292 (294)
Q Consensus 263 ~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 292 (294)
..|.+++..+..+.|++.+.+|.|.+|++.
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 349999999999999999999999999985
No 463
>PLN02153 epithiospecifier protein
Probab=90.72 E-value=7.1 Score=30.91 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=21.5
Q ss_pred CeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEecc
Q 022590 238 GKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCE 282 (294)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~ 282 (294)
..+.+||..+.+........ .......... ...++++++.|+.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~--~~~~~~iyv~GG~ 260 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAH--AVVGKYIIIFGGE 260 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeee--EEECCEEEEECcc
Confidence 46889998887644332211 0011111122 2235677777775
No 464
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.27 E-value=8.9 Score=31.32 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=43.2
Q ss_pred ceEEEEeCCCCCceEEEe-eCCC----cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceE-EeeecC-------
Q 022590 55 SINEIRTQPLKPSLVVSA-SKDE----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMD------- 121 (294)
Q Consensus 55 ~v~~~~~~~~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~d------- 121 (294)
.+....++| +++++|-+ +..| ++++.|+.+++.+...- ....-..+.|.+ ++..| .+...+
T Consensus 125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i----~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI----ENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE----EEEESEEEEECT-TSSEEEEEECSTTTSS-CC
T ss_pred EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc----cccccceEEEeC-CCCEEEEEEeCcccccccC
Confidence 344678999 77766644 4444 49999999997765332 111223499998 54444 443222
Q ss_pred ---CcEEEEecccc
Q 022590 122 ---NTVKIWSMKEF 132 (294)
Q Consensus 122 ---g~i~~wd~~~~ 132 (294)
..|+.|.+.+.
T Consensus 199 ~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 199 GYPRQVYRHKLGTP 212 (414)
T ss_dssp GCCEEEEEEETTS-
T ss_pred CCCcEEEEEECCCC
Confidence 23677777663
No 465
>PLN02193 nitrile-specifier protein
Probab=90.25 E-value=9.8 Score=31.78 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=32.1
Q ss_pred CCceEEEeeCCC-----cEEEEEcCCCceEEEeeccC--CCCCceeEEEEecCCCceEEeeecCC-----cEEEEeccc
Q 022590 65 KPSLVVSASKDE-----SVRLWNVQTGICILIFAGAG--GHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKE 131 (294)
Q Consensus 65 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~~~~~dg-----~i~~wd~~~ 131 (294)
++.+++.|+.++ .+..+|+.+.+-.. +.... .....-.++... ++.+++.|+.++ .+..||+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL-LTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEE-cCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCC
Confidence 456777777653 57788887654332 22110 011111122222 566777777654 355666655
No 466
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.21 E-value=9.7 Score=33.27 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=62.0
Q ss_pred EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590 12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 91 (294)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 91 (294)
+..+..-+|.|+ -++.+..||+|++|+.......+... ...+-..+.|.. . -|+++..|..+.-|.- .|-..+.
T Consensus 16 ~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tn-h--gl~~~tsdrr~la~~~-dgvvqqq 89 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTN-H--GLVTATSDRRALAWKE-DGVVQQQ 89 (1636)
T ss_pred eeeeeeecCCCc-eEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeec-c--ceEEEeccchhheeec-cCcchhh
Confidence 344445569888 99999999999999986654422222 223444566654 3 3677778888877864 3433333
Q ss_pred eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEec
Q 022590 92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 129 (294)
Q Consensus 92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~ 129 (294)
|.-.........++...|...+ ++|..-|-+.-+|.
T Consensus 90 fdyndqsekefss~~cdptaqn--vvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQN--VVGTLCGGVEQFDC 125 (1636)
T ss_pred ccccchhhhhccceecCchhhh--hhhhhccceeeehH
Confidence 3211123334556666663333 23333344554543
No 467
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.20 E-value=14 Score=33.39 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=61.9
Q ss_pred EEEEeecCCeEEEEEcCCcccccee-cccCcceEEEEeCCC--CCc---eEEEeeCCCcEEEEEcC-CCceEEEeec-cC
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPL--KPS---LVVSASKDESVRLWNVQ-TGICILIFAG-AG 96 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~---~l~s~~~dg~i~vwd~~-~~~~~~~~~~-~~ 96 (294)
.++.++.++.+...++..+...... +.....|.|+.++|. +.+ +++.|..+..+.+.-.. ....+..... ..
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~ 580 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE 580 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence 4566666666666666555422111 224568999999974 233 78888887776655433 3333322211 00
Q ss_pred CCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 97 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 97 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
.-...|.-..+-. +.++|.++..||.+..+-+..
T Consensus 581 ~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 581 IIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred ccchheeeEEeec-cceEEEEEcCCceEEEEEEEc
Confidence 1122344445543 578999999999998877665
No 468
>PLN02193 nitrile-specifier protein
Probab=90.06 E-value=10 Score=31.68 Aligned_cols=52 Identities=4% Similarity=-0.009 Sum_probs=26.3
Q ss_pred eEEEEcCC----CeEEEEeccCCCceeeeeccc-cccCCCeEEEEEccCCCEEEEeccC
Q 022590 230 AAAIGNRE----GKIFVWELQSSPPVLIARLSH-AQSKSPIRQTAMSYDGSTILSCCED 283 (294)
Q Consensus 230 ~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d 283 (294)
+++.++.+ ..+.+||+.+.+......... ...+....++ .-++++++.|+.+
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~ 387 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVIFGGEI 387 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEEECCcc
Confidence 55555544 458899998876443332210 0111111222 3356777777753
No 469
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.61 E-value=8.2 Score=29.93 Aligned_cols=230 Identities=13% Similarity=0.027 Sum_probs=98.2
Q ss_pred cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-ccccee--ccc---CcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590 7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSF--VGH---GDSINEIRTQPLKPSLVVSASKDESVRL 80 (294)
Q Consensus 7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~--~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~v 80 (294)
-+.++.+|.|. +.+.-+++|. .+.| +...++ +.=... ... .-...++.|.. ...+++| ..+ +.+
T Consensus 15 t~~~l~dV~F~---d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll 84 (302)
T PF14870_consen 15 TDKPLLDVAFV---DPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLL 84 (302)
T ss_dssp -SS-EEEEEES---SSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEE
T ss_pred CCCceEEEEEe---cCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEE
Confidence 35688889985 3332455554 5543 333333 221111 111 12467788865 3445544 445 334
Q ss_pred EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590 81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160 (294)
Q Consensus 81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
...+.|+.-..+.....-.+....+.... ++..+++ +..|. +|........- ...
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~-~~~G~--iy~T~DgG~tW---------------------~~~ 139 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELA-GDRGA--IYRTTDGGKTW---------------------QAV 139 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEE-ETT----EEEESSTTSSE---------------------EEE
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEE-cCCCc--EEEeCCCCCCe---------------------eEc
Confidence 45555655544431111223344455444 4443333 33444 33333321110 001
Q ss_pred eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590 161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 238 (294)
Q Consensus 161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 238 (294)
...-...+..+... +.+++++.......-||.-... . ..........+..+.|.|++. +.+ ....|
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-------w--~~~~r~~~~riq~~gf~~~~~--lw~-~~~Gg 207 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-------W--QPHNRNSSRRIQSMGFSPDGN--LWM-LARGG 207 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----------EEEE--SSS-EEEEEE-TTS---EEE-EETTT
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-------c--eEEccCccceehhceecCCCC--EEE-EeCCc
Confidence 11222444444443 7777777666666778765321 1 112222457899999999973 333 34788
Q ss_pred eEEEEeccCCCceeee-eccccccCCCeEEEEEccCCCEEEEeccC
Q 022590 239 KIFVWELQSSPPVLIA-RLSHAQSKSPIRQTAMSYDGSTILSCCED 283 (294)
Q Consensus 239 ~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 283 (294)
.|++=+.......... ..+.....-.+..++|.+++...|+|+..
T Consensus 208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 8888772221111111 11111223448999999998888776544
No 470
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.33 E-value=7.8 Score=29.31 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=57.9
Q ss_pred ecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCC
Q 022590 18 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG 97 (294)
Q Consensus 18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 97 (294)
+.|||. .-+++...|.|--.|..+++....--+....-..|..-| ++..-++-+.. -|.=.|-++.+.. .|.....
T Consensus 69 papdG~-VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt-~f~lp~~ 144 (353)
T COG4257 69 PAPDGA-VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVT-RFPLPLE 144 (353)
T ss_pred cCCCCc-eEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceE-Eeecccc
Confidence 347776 677777777777777777776554444455566777777 55555543332 3444455454433 2332222
Q ss_pred C-CCceeEEEEecCCCceEEeee
Q 022590 98 H-RNEVLSVDFHPSDIYRIASCG 119 (294)
Q Consensus 98 ~-~~~v~~l~~~~~~~~~l~~~~ 119 (294)
| ........|.+ .+++-+++.
T Consensus 145 ~a~~nlet~vfD~-~G~lWFt~q 166 (353)
T COG4257 145 HADANLETAVFDP-WGNLWFTGQ 166 (353)
T ss_pred cCCCcccceeeCC-CccEEEeec
Confidence 3 35677888888 777777764
No 471
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.69 E-value=11 Score=30.23 Aligned_cols=203 Identities=12% Similarity=0.144 Sum_probs=105.6
Q ss_pred CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEec----CCCce-EEeee-cC---CcEEEEeccccccc
Q 022590 65 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP----SDIYR-IASCG-MD---NTVKIWSMKEFWTY 135 (294)
Q Consensus 65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~~-l~~~~-~d---g~i~~wd~~~~~~~ 135 (294)
...+++....++-+.+||+ .|+.+..+.. +.++.+..-. .+... |+.++ .+ .+|++|.+......
T Consensus 67 ~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~-----Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDL-DGKELQSLPV-----GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEET-TS-EEEEE-S-----S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred ccceEEEEeCCCCEEEEcC-CCcEEEeecC-----CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 3457888888888999999 6777766642 3344443321 12221 33333 32 46999988642111
Q ss_pred cccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-----c-ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeee
Q 022590 136 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----G-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 209 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 209 (294)
... +.... .+ +......+..++.- + -+.++...+|.+..|.+...... ......+++
T Consensus 141 L~~-v~~~~-----------~p---~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g--~v~~~lVR~ 203 (381)
T PF02333_consen 141 LTD-VTDPA-----------AP---IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG--KVSATLVRE 203 (381)
T ss_dssp EEE--CBTT-----------C----EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS--SEEEEEEEE
T ss_pred ceE-cCCCC-----------cc---cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC--cEeeEEEEE
Confidence 100 00000 00 00111223344431 3 36677788898888877532210 012346777
Q ss_pred eecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc---eeeeeccccccCCCeEEEEEcc--CC-CEEEE-ecc
Q 022590 210 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP---VLIARLSHAQSKSPIRQTAMSY--DG-STILS-CCE 282 (294)
Q Consensus 210 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~s~--~~-~~l~s-~~~ 282 (294)
+.... .+..|...... ..|+.+-++--|.-|+.+.... ..+...........|..|++-. ++ .||+. .=.
T Consensus 204 f~~~s-Q~EGCVVDDe~--g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 204 FKVGS-QPEGCVVDDET--GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp EE-SS--EEEEEEETTT--TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred ecCCC-cceEEEEeccc--CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 76643 57777777665 5899999998888888874322 2222222223345677887753 33 35554 446
Q ss_pred CCcEEEEecCC
Q 022590 283 DGAIWRWDAIP 293 (294)
Q Consensus 283 dg~i~vw~~~~ 293 (294)
++...||+.+.
T Consensus 281 ~~sf~Vy~r~~ 291 (381)
T PF02333_consen 281 DNSFAVYDREG 291 (381)
T ss_dssp GTEEEEEESST
T ss_pred CCeEEEEecCC
Confidence 77899999764
No 472
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.67 E-value=17 Score=32.45 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=46.3
Q ss_pred EEEEeecCCeEEEEEcCCccccceecccCcceE-------------EEEeCCC-CCceEEEeeC----------CCcEEE
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN-------------EIRTQPL-KPSLVVSASK----------DESVRL 80 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-------------~~~~~~~-~~~~l~s~~~----------dg~i~v 80 (294)
.++.++.|+.+.-.|.++|+....+.. .+.|. .+.-.|. .+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 688888999999999999998866532 11110 0111110 1235555542 688999
Q ss_pred EEcCCCceEEEeec
Q 022590 81 WNVQTGICILIFAG 94 (294)
Q Consensus 81 wd~~~~~~~~~~~~ 94 (294)
+|.++|+.+-.+..
T Consensus 341 ~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 341 FDVNTGALVWAWDP 354 (764)
T ss_pred EECCCCcEeeEEec
Confidence 99999999988863
No 473
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.49 E-value=1.6 Score=20.34 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=20.7
Q ss_pred ceEEEeeCCCcEEEEEcCCCceEEE
Q 022590 67 SLVVSASKDESVRLWNVQTGICILI 91 (294)
Q Consensus 67 ~~l~s~~~dg~i~vwd~~~~~~~~~ 91 (294)
..++.++.+|.+..+|..+|+.+..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3677888899999999999887654
No 474
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=19 Score=32.51 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=42.7
Q ss_pred CCCceEEEEeecCCeEEEEEcCCcccc---ce------e--cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590 20 VDGIPFLVAGGINGIIRVIDVSNEKLH---KS------F--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 88 (294)
Q Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~------~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 88 (294)
.-|+ .+..|+.+|.+.+|.+.+.... .. + .-+..+|+.+...+ .-.++. .-.|+.|.++++.+-+.
T Consensus 24 ~~~~-~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~-~~~~ll-~l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 24 AYGN-HLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCA-SLELLL-ILSDSQIAVHKLPELEP 100 (877)
T ss_pred HhCC-EEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcc-hhcchh-eecCCcceeeecCcccc
Confidence 3465 8999999999999998654211 11 1 11357788887777 333333 34567788888876555
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.18 E-value=10 Score=29.22 Aligned_cols=197 Identities=8% Similarity=-0.031 Sum_probs=87.7
Q ss_pred cEEEEEcCCCceEEEeeccC---CCCCceeEEEEecCCC-----ceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590 77 SVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDI-----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 148 (294)
Q Consensus 77 ~i~vwd~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~-----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 148 (294)
.|.+||+.+++.++.+.... ...+.+..+.+....+ ...++=...+-|.|+|+.++.......-.....+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 57789999998887776421 1245678888876332 233444445689999999854322221111111110
Q ss_pred CCCceeeeceEEeecCCCceeeccee-----cceEEEeeCCCeEEEecCC-----CCCCCCCCCCceeeeeeecCCCCee
Q 022590 149 FPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPK-----MKEQSPGEGTADILQKYPVPECDIW 218 (294)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (294)
.... ..-..+.. ...+..++.+ ++.|.-....+. ++|.+. .............+..+-.......
T Consensus 115 ~~~~---i~g~~~~~-~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~ 189 (287)
T PF03022_consen 115 GPFT---IGGESFQW-PDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSD 189 (287)
T ss_dssp EEEE---ETTEEEEE-TTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SEC
T ss_pred ccee---ccCceEec-CCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCc
Confidence 0000 00001111 1113333332 233333322221 122221 1111000000011122211123455
Q ss_pred EEEEcccCCcceEEEEcCCCeEEEEeccCCCce-eeeecccccc-CCCeEEEEEcc--CCCEEEEe
Q 022590 219 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV-LIARLSHAQS-KSPIRQTAMSY--DGSTILSC 280 (294)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~-~~~v~~~~~s~--~~~~l~s~ 280 (294)
.+++.++| .++++--..+.|..|+....-.. ....+..... -..+..+.+.+ +|.+.+..
T Consensus 190 g~~~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 190 GMAIDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred eEEECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 67888877 67778888999999998872110 1111111122 35678899998 77655544
No 476
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.61 E-value=13 Score=29.83 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=50.0
Q ss_pred CCeeEEEEccc--CCcceEEEEcCCCeEEEEeccC-CCc----eeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590 215 CDIWFIKFSCD--FHYNAAAIGNREGKIFVWELQS-SPP----VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 287 (294)
Q Consensus 215 ~~i~~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~-~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 287 (294)
..++.+++-.+ ....+++....+|.+..|.+.. ++. ..++++. -...+..+.......+|..+-++.-|.
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---~~sQ~EGCVVDDe~g~LYvgEE~~GIW 232 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---VGSQPEGCVVDDETGRLYVGEEDVGIW 232 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTTEEEEEETTTEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec---CCCcceEEEEecccCCEEEecCccEEE
Confidence 34677776432 2224777788899999998863 221 2333333 235789999998888999998887777
Q ss_pred EEecCC
Q 022590 288 RWDAIP 293 (294)
Q Consensus 288 vw~~~~ 293 (294)
-|+.++
T Consensus 233 ~y~Aep 238 (381)
T PF02333_consen 233 RYDAEP 238 (381)
T ss_dssp EEESSC
T ss_pred EEecCC
Confidence 777765
No 477
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=87.25 E-value=1.8 Score=19.48 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=20.7
Q ss_pred cceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590 54 DSINEIRTQPLKPSLVVSASKDESVRLWN 82 (294)
Q Consensus 54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 82 (294)
..|.+++..+ .+++.+..-+.+|+|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 4578888866 6888888889999873
No 478
>PRK10115 protease 2; Provisional
Probab=86.63 E-value=22 Score=31.45 Aligned_cols=108 Identities=7% Similarity=-0.016 Sum_probs=58.1
Q ss_pred EeecCCCceEEEEee-cC----CeEEEEEcCCccccceecccCcceEEEEeCCCCCc-eEEEeeCC-----CcEEEEEcC
Q 022590 16 WACNVDGIPFLVAGG-IN----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKD-----ESVRLWNVQ 84 (294)
Q Consensus 16 ~~~~~~~~~~l~~~~-~d----g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~d-----g~i~vwd~~ 84 (294)
|.++|+|+ +|+.+. .+ ..|++.|+.+++.+...-.... ..++|.+ +++ ++++...+ ..|..+++.
T Consensus 132 ~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 132 MAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEEEECC
Confidence 44469999 666543 22 3588999988864332221222 5699999 555 44444322 357778888
Q ss_pred CC--ceEEEeeccCCCCCceeEEEEecCCCceEEeee---cCCcEEEEecc
Q 022590 85 TG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMK 130 (294)
Q Consensus 85 ~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~---~dg~i~~wd~~ 130 (294)
++ +-...+.. ......-..+.+.++.+++..+ .++.+.+++..
T Consensus 208 t~~~~d~lv~~e---~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 208 TPASQDELVYEE---KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CChhHCeEEEee---CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 77 33344442 2222331223332555444433 34568888854
No 479
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=86.55 E-value=2 Score=19.37 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=18.5
Q ss_pred eEEEEEccCCCEEEEeccCCcEEEE
Q 022590 265 IRQTAMSYDGSTILSCCEDGAIWRW 289 (294)
Q Consensus 265 v~~~~~s~~~~~l~s~~~dg~i~vw 289 (294)
...++++++|+++++=+....|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4667888888877777777777664
No 480
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=86.28 E-value=14 Score=28.76 Aligned_cols=99 Identities=10% Similarity=0.140 Sum_probs=56.5
Q ss_pred EEEEeecCCeEEEEEcCC--ccccceecccCcceEEEEeCCCCCceEE-EeeCCCcEEEEEcCCCce-------------
Q 022590 25 FLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQTGIC------------- 88 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~------------- 88 (294)
+|+.|+.+|...+ +..+ .+..+.+ +...|+++...+ ..+.|+ -++....++++++..-..
T Consensus 15 ~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~~~v~q~~v~~-~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 15 WLLVGTEEGLYVL-NISDQPGTLEKLI--GRRSVTQIWVLE-ENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred EEEEEeCCceEEE-EcccCCCCeEEec--CcCceEEEEEEh-hhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 8999999985554 4544 2333322 467899999998 555444 444445599999843221
Q ss_pred ---EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590 89 ---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131 (294)
Q Consensus 89 ---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~ 131 (294)
...+ ++................++++....+|.++....
T Consensus 91 ~~~~~~~----~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~ 132 (302)
T smart00036 91 KNVLTKI----PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYN 132 (302)
T ss_pred ccceEeC----CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccC
Confidence 1111 24443444444432233445556667787775543
No 481
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.99 E-value=28 Score=31.94 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred eEEEEEcCCccccceecccCc----ceEEEEeCCCCCceEEEeeCCCcEEEEEc-------------CCCceEEEeeccC
Q 022590 34 IIRVIDVSNEKLHKSFVGHGD----SINEIRTQPLKPSLVVSASKDESVRLWNV-------------QTGICILIFAGAG 96 (294)
Q Consensus 34 ~i~iw~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~s~~~dg~i~vwd~-------------~~~~~~~~~~~~~ 96 (294)
.|++.|..+++.+..+....+ .|.++.|+..+...++.++.+.+-.+|.. ..++.+..+.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh--- 930 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH--- 930 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee---
Q ss_pred CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc
Q 022590 97 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 176 (294)
Q Consensus 97 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 176 (294)
...-+-.-.+..|..+..|+..+ ..+++||+...+ .........-+..|..+++.+.
T Consensus 931 ~T~~~~~v~Ai~~f~~~~LagvG--~~l~~YdlG~K~---------------------lLRk~e~k~~p~~Is~iqt~~~ 987 (1205)
T KOG1898|consen 931 KTEIPGPVGAICPFQGRVLAGVG--RFLRLYDLGKKK---------------------LLRKCELKFIPNRISSIQTYGA 987 (1205)
T ss_pred ccCCCccceEEeccCCEEEEecc--cEEEEeeCChHH---------------------HHhhhhhccCceEEEEEeecce
Q ss_pred eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590 177 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 245 (294)
Q Consensus 177 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 245 (294)
.+++|..--.+.++-.+.. ....+.-...+-.+.....+--|. ..++.++.=|.+.+..+
T Consensus 988 RI~VgD~qeSV~~~~y~~~-------~n~l~~fadD~~pR~Vt~~~~lD~--~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRRE-------DNQLIVFADDPVPRHVTALELLDY--DTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEEEeeccceEEEEEEecC-------CCeEEEEeCCCccceeeEEEEecC--CceeeccccCcEEEEEC
No 482
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.74 E-value=2.9 Score=20.46 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=18.2
Q ss_pred CceeEEEEEeecCCCceEEEEeecC--CeEEEE
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGIN--GIIRVI 38 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~d--g~i~iw 38 (294)
.+.-....|+ |||+.++.++..+ |.-.||
T Consensus 8 ~~~~~~p~~S--pDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWS--PDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE---TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEe--cCCCEEEEEecCCCCCCcCEE
Confidence 3445566666 9999566666666 666665
No 483
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.74 E-value=17 Score=29.23 Aligned_cols=102 Identities=10% Similarity=-0.071 Sum_probs=59.3
Q ss_pred EEEEeecCCeEEEEEcCCccccceeccc--CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCC-c
Q 022590 25 FLVAGGINGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN-E 101 (294)
Q Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~ 101 (294)
.+.++..+|.|.-.|.++++.+.....- ...+..-.+.. +++ ++.++.+|.+..+|..+|+.+..... ... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~---~~~~~ 144 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNV---GGSPY 144 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEec---CCCeE
Confidence 4777788898888898888765433221 12222222222 444 77788889888999988998888773 220 1
Q ss_pred eeEEEEecCCCceEEeeecCCcEEEEeccccc
Q 022590 102 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133 (294)
Q Consensus 102 v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 133 (294)
+..-..- ....+..++.++.+...+..++.
T Consensus 145 ~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 145 YASPPVV--GDGTVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred EecCcEE--cCcEEEEecCCCeEEEEEccCCc
Confidence 1111111 12223334466777777776643
No 484
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.89 E-value=3.3 Score=20.28 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.9
Q ss_pred eEEEeeCCCcEEEEEcCCCceEEEeec
Q 022590 68 LVVSASKDESVRLWNVQTGICILIFAG 94 (294)
Q Consensus 68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~ 94 (294)
.++.++.+|.|.-.|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 356669999999999999999988873
No 485
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.75 E-value=19 Score=28.96 Aligned_cols=157 Identities=10% Similarity=-0.025 Sum_probs=0.0
Q ss_pred CceeEEEEecCCCceEEee-----------ecCC-cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590 100 NEVLSVDFHPSDIYRIASC-----------GMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 167 (294)
Q Consensus 100 ~~v~~l~~~~~~~~~l~~~-----------~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (294)
.....|+|.+ +++++++- ...+ .|.+++-......... ...+......
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~-------------------~~vfa~~l~~ 73 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK-------------------SNVFAEELSM 73 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce-------------------eEEeecCCCC
Q ss_pred eeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC----CCCeeEEEEcccCCcceEEEEcCC------
Q 022590 168 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNRE------ 237 (294)
Q Consensus 168 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~~~~~d------ 237 (294)
...+.+..+- +-.+....|..+.-..+...........+..+... ......+.|.|++ .+.++-+..
T Consensus 74 p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG--~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 74 VTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG--WLYFNHGNTLASKVT 150 (367)
T ss_pred ccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC--CEEEecccCCCceec
Q ss_pred -------------CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590 238 -------------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284 (294)
Q Consensus 238 -------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 284 (294)
|.|.-++....+......--.. ...++|+|+|+++++-..++
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rn-----p~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQN-----PYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCC-----CccceECCCCCEEEEccCCC
No 486
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.67 E-value=3.4 Score=20.24 Aligned_cols=28 Identities=7% Similarity=0.251 Sum_probs=22.1
Q ss_pred eEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590 230 AAAIGNREGKIFVWELQSSPPVLIARLS 257 (294)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 257 (294)
.++.++.+|.++-.|.++++.+......
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566699999999999999866666554
No 487
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=84.46 E-value=20 Score=28.95 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=21.1
Q ss_pred EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590 240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 283 (294)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 283 (294)
+.+||.++.+......++.. .... .+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~--~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYG--VSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccce--EEEEeCCEEEEEcCCC
Confidence 56788887764333333211 1112 2334467788887753
No 488
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=84.29 E-value=20 Score=31.80 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=49.6
Q ss_pred CCeeEEEEc----ccCCcceEEEEcCCCeEE-EEeccC---CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcE
Q 022590 215 CDIWFIKFS----CDFHYNAAAIGNREGKIF-VWELQS---SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 286 (294)
Q Consensus 215 ~~i~~~~~~----~~~~~~~l~~~~~dg~i~-i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 286 (294)
...+.++.. .++.+..|+.|+++|+|. +..... ...+.+..+..-.+..+|..|..++..+.|+.|+..|.+
T Consensus 408 ~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV~ 487 (737)
T KOG3611|consen 408 YRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGVV 487 (737)
T ss_pred ceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcEE
Confidence 445555555 556678899999999865 333333 111133344433445889999999998899999999876
Q ss_pred EE
Q 022590 287 WR 288 (294)
Q Consensus 287 ~v 288 (294)
+|
T Consensus 488 qv 489 (737)
T KOG3611|consen 488 QV 489 (737)
T ss_pred Ee
Confidence 64
No 489
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.22 E-value=36 Score=31.70 Aligned_cols=33 Identities=6% Similarity=0.229 Sum_probs=26.6
Q ss_pred cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
.....++|+| ...+++.++..|.|.++-...-+
T Consensus 36 ~~~~~~afD~-~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDP-TQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeecc-ccceEEEEEecccEEEecccceE
Confidence 3556788999 77899999999999999764433
No 490
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=84.21 E-value=21 Score=28.96 Aligned_cols=65 Identities=8% Similarity=0.044 Sum_probs=40.7
Q ss_pred eEEEeeCCCcEEEEEcCCCceEEEeecc-CCCCCceeEEEEecCCCceEEee-------ecCCcEEEEeccccc
Q 022590 68 LVVSASKDESVRLWNVQTGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASC-------GMDNTVKIWSMKEFW 133 (294)
Q Consensus 68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~-------~~dg~i~~wd~~~~~ 133 (294)
.+..-+..+.|-+|+..+++....+... ....+.-..+.|.+ ...+++.. ..++.|++||.+...
T Consensus 237 ~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~n-g~~~li~~~~fp~~~kdN~~i~~~d~Rd~n 309 (465)
T KOG2714|consen 237 QLVALSSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLN-GSNLLIDSQKFPLRMKDNDLIVTEDFRDRN 309 (465)
T ss_pred hhhhccccccccccchhhhceeeeeeccCccccCChhhhcccc-CceeEEEEeeccccccCCceEEEeeccCCC
Confidence 3445567788999999888544333321 12334556677887 44444332 357789999999854
No 491
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.10 E-value=21 Score=29.04 Aligned_cols=157 Identities=9% Similarity=-0.044 Sum_probs=0.0
Q ss_pred CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590 8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 87 (294)
Q Consensus 8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 87 (294)
.+....+.-. ++|. +++.+..-..++-||-....-...-......++.+.+.+ ++.+++++..-+.+.--|-....
T Consensus 238 ~Gsf~~v~~~--~dG~-~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g~~G~l~~S~d~G~~~ 313 (398)
T PLN00033 238 TGTFSTVNRS--PDGD-YVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLTRGGGLYVSKGTGLTE 313 (398)
T ss_pred ccceeeEEEc--CCCC-EEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEeCCceEEEecCCCCcc
Q ss_pred eEEEeeccCCCCCc--eeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590 88 CILIFAGAGGHRNE--VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 165 (294)
Q Consensus 88 ~~~~~~~~~~~~~~--v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (294)
....+......... +.++.|.+ ++. ++.++..|.+....-.... -........-.
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~-d~~-~~a~G~~G~v~~s~D~G~t---------------------W~~~~~~~~~~ 370 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRS-KKE-AWAAGGSGILLRSTDGGKS---------------------WKRDKGADNIA 370 (398)
T ss_pred cccceeecccCCCCcceEEEEEcC-CCc-EEEEECCCcEEEeCCCCcc---------------------eeEccccCCCC
Q ss_pred Cceeeccee-cceEEEeeCCCeEEEec
Q 022590 166 NYVDCNRWL-GDFILSKSVDNEIVLWE 191 (294)
Q Consensus 166 ~~i~~~~~~-~~~l~~~~~d~~i~iwd 191 (294)
..+..+.|. .+.....+.+|.|.-|.
T Consensus 371 ~~ly~v~f~~~~~g~~~G~~G~il~~~ 397 (398)
T PLN00033 371 ANLYSVKFFDDKKGFVLGNDGVLLRYL 397 (398)
T ss_pred cceeEEEEcCCCceEEEeCCcEEEEeC
No 492
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.07 E-value=14 Score=26.80 Aligned_cols=103 Identities=9% Similarity=-0.066 Sum_probs=58.1
Q ss_pred CCceEEEeeC--CCcEEEEEcCCCceEEEeecc--CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce
Q 022590 65 KPSLVVSASK--DESVRLWNVQTGICILIFAGA--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 140 (294)
Q Consensus 65 ~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 140 (294)
++.++.+.+. ...|++||+.+++.+..-... .-....++.+ +..+.+-.-.+|.-..+|.++.+.....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~-- 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRF-- 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhccc--
Confidence 4567777654 346999999999877655421 0011112211 2233333456788888888874322111
Q ss_pred eecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCC
Q 022590 141 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 196 (294)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 196 (294)
..++.-..++.++..|+.+....+++.-|..+..
T Consensus 128 ----------------------~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 128 ----------------------SYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ----------------------ccCCcceeeecCCcceEeeCCceEEEecCHHHhh
Confidence 1223334455556667776667778887876554
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.77 E-value=13 Score=26.13 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=24.5
Q ss_pred CCeEEEEEccCC------CEEEEeccCCcEEEEec
Q 022590 263 SPIRQTAMSYDG------STILSCCEDGAIWRWDA 291 (294)
Q Consensus 263 ~~v~~~~~s~~~------~~l~s~~~dg~i~vw~~ 291 (294)
..+.+++|||.| .+|++.+.+|.|.||.-
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 379999999954 47889999999999964
No 494
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.51 E-value=25 Score=29.45 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCceeEEEEecCCCceEEeeecCCcEEEEecc
Q 022590 99 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 130 (294)
Q Consensus 99 ~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~ 130 (294)
.-.|..+..++ .|..++-.|.+|.+.++=.+
T Consensus 103 ~feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~ 133 (741)
T KOG4460|consen 103 LFEVYQVLLSP-TGSHVALIGIKGLMVMELPK 133 (741)
T ss_pred eEEEEEEEecC-CCceEEEecCCeeEEEEchh
Confidence 34577788888 77778888888877665433
No 495
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.47 E-value=34 Score=30.85 Aligned_cols=124 Identities=8% Similarity=0.122 Sum_probs=72.2
Q ss_pred cCceeEEEEEe---ecCCCceEEEEeecCCeEEEEEcCCc---------------cccceecc---cCcceEEEEeCCCC
Q 022590 7 KEESFYTVSWA---CNVDGIPFLVAGGINGIIRVIDVSNE---------------KLHKSFVG---HGDSINEIRTQPLK 65 (294)
Q Consensus 7 h~~~v~~~~~~---~~~~~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~---h~~~v~~~~~~~~~ 65 (294)
-..+|..|+|+ ...+.....+..-....+.|+...-. .++..+.. -..+..+++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 45788889987 22222212344444557777772111 12222321 23467889999988
Q ss_pred CceEEEeeCCCcEEEEEcCCCc-----eEEEeeccCCC-------CCceeEEEEecCCCceEEeeecCCcEEEEecccc
Q 022590 66 PSLVVSASKDESVRLWNVQTGI-----CILIFAGAGGH-------RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 132 (294)
Q Consensus 66 ~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~ 132 (294)
...||.....|.-.||++.... .........++ .+.-..+.|.+ +.+.|+.+.. ..+.++|+...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-CceEEEECCCC
Confidence 8899999999999999992111 11111110011 12234778877 6566666664 57888998873
No 496
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.43 E-value=3.9 Score=19.99 Aligned_cols=28 Identities=21% Similarity=0.059 Sum_probs=17.6
Q ss_pred CCeeEEEEcccCCcceEEEEcCC--CeEEEE
Q 022590 215 CDIWFIKFSCDFHYNAAAIGNRE--GKIFVW 243 (294)
Q Consensus 215 ~~i~~~~~~~~~~~~~l~~~~~d--g~i~i~ 243 (294)
..-....|+|+|+ .++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk-~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGK-YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSS-EEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCC-EEEEEecCCCCCCcCEE
Confidence 3456788999997 455555555 666555
No 497
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.42 E-value=25 Score=29.23 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=0.0
Q ss_pred CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecce--
Q 022590 100 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDF-- 177 (294)
Q Consensus 100 ~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 177 (294)
...+.|+|.| ++.+|++--..|.|++++.......... ..+..........+..++++.++
T Consensus 30 ~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~----------------~l~~v~~~~ge~GLlglal~PdF~~ 92 (454)
T TIGR03606 30 NKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVF----------------TLPEIVNDAQHNGLLGLALHPDFMQ 92 (454)
T ss_pred CCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeee----------------cCCceeccCCCCceeeEEECCCccc
Q ss_pred ------EEEee----------CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-----
Q 022590 178 ------ILSKS----------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR----- 236 (294)
Q Consensus 178 ------l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~----- 236 (294)
|.... ....|.-|.+............-....-......-..+.|.|++. .++.+|+.
T Consensus 93 ~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~ 171 (454)
T TIGR03606 93 EKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQG 171 (454)
T ss_pred cCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCc
Q ss_pred --------------------------CCeEEEEeccCC-----------CceeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590 237 --------------------------EGKIFVWELQSS-----------PPVLIARLSHAQSKSPIRQTAMSYDGSTILS 279 (294)
Q Consensus 237 --------------------------dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 279 (294)
-|.|.-.+.... .+..... +|+++. .++|+|+|++.++
T Consensus 172 ~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~----G~RNp~-Gla~dp~G~Lw~~ 246 (454)
T TIGR03606 172 ANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY----GHRNPQ-GLAFTPDGTLYAS 246 (454)
T ss_pred ccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE----eccccc-eeEECCCCCEEEE
No 498
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=83.05 E-value=43 Score=31.79 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=17.4
Q ss_pred ccCCCeEEEEEccCCCEEEEeccCC
Q 022590 260 QSKSPIRQTAMSYDGSTILSCCEDG 284 (294)
Q Consensus 260 ~~~~~v~~~~~s~~~~~l~s~~~dg 284 (294)
.+-..+.++|.+|||...++-..+-
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~ 683 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNS 683 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCch
Confidence 3446778899999998776654443
No 499
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.54 E-value=37 Score=30.62 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=50.3
Q ss_pred ccCcceEEEEeC---CC---CCceEEEeeCCCcEEEEEcCCC---------------ceEEEeeccCCCCCceeEEEEec
Q 022590 51 GHGDSINEIRTQ---PL---KPSLVVSASKDESVRLWNVQTG---------------ICILIFAGAGGHRNEVLSVDFHP 109 (294)
Q Consensus 51 ~h~~~v~~~~~~---~~---~~~~l~s~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~l~~~~ 109 (294)
....+|..|+|. .. ...+|++ -....+.|+...-. .++..+....--..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 21 1234444 44456667762111 22233321111223678899999
Q ss_pred CCCceEEeeecCCcEEEEecc
Q 022590 110 SDIYRIASCGMDNTVKIWSMK 130 (294)
Q Consensus 110 ~~~~~l~~~~~dg~i~~wd~~ 130 (294)
.+...||.....|...||++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~ 176 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIK 176 (765)
T ss_pred CccceEEEEeccCcEEEEEec
Confidence 888899999999999999993
No 500
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=82.45 E-value=6.4 Score=23.99 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe--ccCCcEEEE
Q 022590 234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC--CEDGAIWRW 289 (294)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~vw 289 (294)
+..+|.+.-||..+++......--.- -+.+++++|+.+|+.+ ..-...+.|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~f-----pNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYF-----PNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESS-----EEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCc-----cCeEEEcCCCCEEEEEeccCceEEEEE
Done!