BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022591
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VLV|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase
(tm1097) From Thermotoga Maritima At 2.25 A Resolution
Length = 325
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 51 MNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGL 87
MN + GPE L+P RS +++ C IV GSV
Sbjct: 193 MNFVACGPEELKP---RSDVFKRCQEIVKETDGSVSF 226
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 28.5 bits (62), Expect = 4.5, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 23/78 (29%)
Query: 7 GCRVLRKGCNENCSIRPCLQ-------WIKSPESQANATVFLAK---------------- 43
GC ++R+ + C + C+Q ++ +PE N FLA+
Sbjct: 1101 GCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNE 1160
Query: 44 FYGRAGLMNLINAGPEHL 61
GR L++ ++ G EHL
Sbjct: 1161 VIGRTDLLHQVSRGAEHL 1178
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 23/78 (29%)
Query: 7 GCRVLRKGCNENCSIRPCLQ-------WIKSPESQANATVFLAK---------------- 43
GC ++R+ + C + C+Q ++ +PE N FLA+
Sbjct: 1101 GCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNE 1160
Query: 44 FYGRAGLMNLINAGPEHL 61
GR L++ ++ G EHL
Sbjct: 1161 VIGRTDLLHQVSRGAEHL 1178
>pdb|1EE6|A Chain A, Crystal Structure Of Pectate Lyase From Bacillus Sp.
Strain Ksm-P15
Length = 197
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 50 LMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSG 91
+MN+ N ++ A+ R+ + GRIVN Y +V L+ G
Sbjct: 142 VMNVENCNISRVKDAILRTDSSTSTGRIVNTRYSNVPTLFKG 183
>pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWN|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWN|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWN|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWN|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 SGSWQLCQAAVEAVLKGAPITPINSEAAA 118
+GS QLCQAAV A+ A P++ AAA
Sbjct: 98 TGSTQLCQAAVHALSSLARSQPVSVVAAA 126
>pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWO|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWO|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWO|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWO|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 SGSWQLCQAAVEAVLKGAPITPINSEAAA 118
+GS QLCQAAV A+ A P++ AAA
Sbjct: 98 TGSTQLCQAAVHALSSLARSQPVSVVAAA 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,115,863
Number of Sequences: 62578
Number of extensions: 236461
Number of successful extensions: 381
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 8
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)