Query 022591
Match_columns 294
No_of_seqs 143 out of 303
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:43:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1.8E-45 4E-50 297.4 8.4 101 4-109 1-101 (101)
2 PF04706 Dickkopf_N: Dickkopf 16.0 79 0.0017 23.5 1.1 16 3-18 21-36 (52)
3 PF14653 IGFL: Insulin growth 15.9 76 0.0016 26.3 1.0 15 12-26 42-56 (89)
4 PF03242 LEA_3: Late embryogen 14.3 75 0.0016 26.2 0.6 20 70-89 58-77 (93)
5 PRK00451 glycine dehydrogenase 13.6 1E+02 0.0022 29.6 1.4 35 22-62 2-36 (447)
6 PF15300 INT_SG_DDX_CT_C: INTS 11.6 1.1E+02 0.0024 23.8 0.8 30 45-74 18-51 (65)
7 PF00172 Zn_clus: Fungal Zn(2) 11.5 1.2E+02 0.0025 20.5 0.8 15 3-17 1-15 (40)
8 PF05965 FYRC: F/Y rich C-term 10.7 1.7E+02 0.0036 22.5 1.6 22 41-62 53-76 (86)
9 PF14623 Vint: Hint-domain 10.3 1.1E+02 0.0024 27.6 0.5 38 41-84 122-159 (162)
10 smart00542 FYRC "FY-rich" doma 7.9 2.5E+02 0.0053 22.1 1.5 20 42-61 50-71 (86)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=1.8e-45 Score=297.44 Aligned_cols=101 Identities=30% Similarity=0.576 Sum_probs=97.4
Q ss_pred CChhhhhccCCCCCCCccccCCCCCCCChhhhhhHHHHHhhcccccHHHHHhcCCCCChHHHHHHhhhhhcccccCCCcc
Q 022591 4 SCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYG 83 (294)
Q Consensus 4 ~CAACK~LRRkC~~dCilAPYFPw~~spe~q~naf~fvhKVFG~SNV~KmL~~lp~~~R~dA~~SL~YEA~aR~rDPVyG 83 (294)
+|||||||||+|+++|+|||||| .++.+.|.++|||||++||+|||+++|+++|+++|+||+|||++|.+|||||
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP-----~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~G 75 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFP-----ADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYG 75 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCC-----hhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcc
Confidence 79999999999999999999998 5667889999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhHHHHHHHHHHHHcCCCc
Q 022591 84 SVGLLWSGSWQLCQAAVEAVLKGAPI 109 (294)
Q Consensus 84 cvGiI~~Lq~Qi~qaavEavL~ga~I 109 (294)
|+|+||.|||||+++++|+++.+++|
T Consensus 76 c~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 76 CVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999998876
No 2
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=15.97 E-value=79 Score=23.49 Aligned_cols=16 Identities=38% Similarity=0.821 Sum_probs=14.1
Q ss_pred CCChhhhhccCCCCCC
Q 022591 3 MSCNGCRVLRKGCNEN 18 (294)
Q Consensus 3 ~~CAACK~LRRkC~~d 18 (294)
..|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 4699999999999966
No 3
>PF14653 IGFL: Insulin growth factor-like family
Probab=15.91 E-value=76 Score=26.27 Aligned_cols=15 Identities=33% Similarity=1.150 Sum_probs=13.3
Q ss_pred cCCCCCCCccccCCC
Q 022591 12 RKGCNENCSIRPCLQ 26 (294)
Q Consensus 12 RRkC~~dCilAPYFP 26 (294)
-++|..+|.|.|+|.
T Consensus 42 T~~Cg~~Ctf~pcfe 56 (89)
T PF14653_consen 42 TRKCGPNCTFWPCFE 56 (89)
T ss_pred ccccCCCCCccCccc
Confidence 378999999999996
No 4
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=14.27 E-value=75 Score=26.15 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=16.3
Q ss_pred hhhhcccccCCCccchhhhh
Q 022591 70 LYEACGRIVNPIYGSVGLLW 89 (294)
Q Consensus 70 ~YEA~aR~rDPVyGcvGiI~ 89 (294)
-++-..|..|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 66778999999999986544
No 5
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=13.58 E-value=1e+02 Score=29.64 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=23.6
Q ss_pred ccCCCCCCCChhhhhhHHHHHhhcccccHHHHHhcCCCCCh
Q 022591 22 RPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLR 62 (294)
Q Consensus 22 APYFPw~~spe~q~naf~fvhKVFG~SNV~KmL~~lp~~~R 62 (294)
-||.| .+++++ ..+-+.||.++|-.++..+|.+.|
T Consensus 2 ~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIP--HTEEDI----REMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCC--CCHHHH----HHHHHHhCCCCHHHHHHhCCHHHH
Confidence 38888 344443 246789999999888776765444
No 6
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=11.61 E-value=1.1e+02 Score=23.81 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=24.9
Q ss_pred ccc--ccHHHHHhcC--CCCChHHHHHHhhhhhc
Q 022591 45 YGR--AGLMNLINAG--PEHLRPAVFRSLLYEAC 74 (294)
Q Consensus 45 FG~--SNV~KmL~~l--p~~~R~dA~~SL~YEA~ 74 (294)
+|. +.|.++|+.+ |.+.|...+..++.||.
T Consensus 18 pGr~ye~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 18 PGRNYEKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred cCCcHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 555 4788999975 78899999999999985
No 7
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=11.50 E-value=1.2e+02 Score=20.50 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=10.7
Q ss_pred CCChhhhhccCCCCC
Q 022591 3 MSCNGCRVLRKGCNE 17 (294)
Q Consensus 3 ~~CAACK~LRRkC~~ 17 (294)
.+|..|+..+.+|..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 379999999999986
No 8
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=10.74 E-value=1.7e+02 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=17.8
Q ss_pred HHhhccccc--HHHHHhcCCCCCh
Q 022591 41 LAKFYGRAG--LMNLINAGPEHLR 62 (294)
Q Consensus 41 vhKVFG~SN--V~KmL~~lp~~~R 62 (294)
-+.+||.++ |.++|++||-.++
T Consensus 53 G~~~FGls~p~V~~lie~Lp~a~~ 76 (86)
T PF05965_consen 53 GPEMFGLSNPAVQRLIESLPGADK 76 (86)
T ss_dssp HHHHHSTTSHHHHHHHTTSTTGGG
T ss_pred HhHhcCCCCHHHHHHHHhCCCcch
Confidence 478999865 8999999997554
No 9
>PF14623 Vint: Hint-domain
Probab=10.27 E-value=1.1e+02 Score=27.57 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=28.8
Q ss_pred HHhhcccccHHHHHhcCCCCChHHHHHHhhhhhcccccCCCccc
Q 022591 41 LAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGS 84 (294)
Q Consensus 41 vhKVFG~SNV~KmL~~lp~~~R~dA~~SL~YEA~aR~rDPVyGc 84 (294)
+|.|||-..|.+-|..|+.-.- =+.+...-.|||.-|-
T Consensus 122 aH~fFG~~~V~~~L~~L~~~~~------G~v~~~g~~Rd~~Tgl 159 (162)
T PF14623_consen 122 AHAFFGDNAVVRDLASLPGFAN------GVVECRGVKRDPETGL 159 (162)
T ss_pred eecccCcHHHHHHHHhCCCCCC------CEEEecceEECccccc
Confidence 6999999999999999986422 2455666688887764
No 10
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=7.90 E-value=2.5e+02 Score=22.12 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=16.3
Q ss_pred Hhhccccc--HHHHHhcCCCCC
Q 022591 42 AKFYGRAG--LMNLINAGPEHL 61 (294)
Q Consensus 42 hKVFG~SN--V~KmL~~lp~~~ 61 (294)
..+||.++ |+++|++||..+
T Consensus 50 ~~mFGls~p~V~~lie~Lpga~ 71 (86)
T smart00542 50 EDMFGLSSPAVVKLIEQLPGVH 71 (86)
T ss_pred HHHhCCCcHHHHHHHHhCCCch
Confidence 47899876 899999999754
Done!