Query 022591
Match_columns 294
No_of_seqs 143 out of 303
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 07:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lrv_A LRV, leucine-rich repea 20.3 35 0.0012 30.0 1.4 75 4-101 13-96 (244)
2 3coq_A Regulatory protein GAL4 10.2 1.1E+02 0.0039 21.7 1.5 17 2-18 1-17 (89)
3 2er8_A Regulatory protein Leu3 9.8 1.4E+02 0.0047 20.7 1.8 17 2-18 3-19 (72)
4 1d66_A Protein (GAL4); protein 9.4 1.3E+02 0.0044 20.2 1.5 17 2-18 8-24 (66)
5 1pyi_A Protein (pyrimidine pat 9.4 5.3E+02 0.018 18.5 5.3 17 2-18 4-20 (96)
6 2jr2_A UPF0352 protein CPS_261 8.7 87 0.003 24.3 0.4 20 50-69 41-60 (76)
7 1cld_A CD2-LAC9; zinc-binding 7.8 1.7E+02 0.0059 19.4 1.6 17 2-18 9-25 (61)
8 1r1f_A Palicourein; cyclotide, 6.5 1.7E+02 0.0057 19.9 0.9 13 14-26 2-16 (37)
9 1bh4_A Circulin A; cyclic pept 6.5 2.1E+02 0.0071 18.6 1.3 12 15-26 1-12 (30)
10 2ib1_A Death domain containing 5.8 1.6E+02 0.0054 22.4 0.6 30 46-75 58-87 (91)
No 1
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=20.31 E-value=35 Score=30.03 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=46.0
Q ss_pred CChhhhhcc-----CCCCCC--CccccCCCCCCCChhhhhhHHHHHhhccc--ccHHHHHhcCCCCChHHHHHHhhhhhc
Q 022591 4 SCNGCRVLR-----KGCNEN--CSIRPCLQWIKSPESQANATVFLAKFYGR--AGLMNLINAGPEHLRPAVFRSLLYEAC 74 (294)
Q Consensus 4 ~CAACK~LR-----RkC~~d--CilAPYFPw~~spe~q~naf~fvhKVFG~--SNV~KmL~~lp~~~R~dA~~SL~YEA~ 74 (294)
.|+.|.|+- -+|.++ |+..+|=+ + +-+||.. .-+..++++-.++-|..+++.|
T Consensus 13 ~c~~c~~~~~~~~~~~c~~~~~c~~~~~~~-------r------i~~~~~~~p~l~~~ll~d~~~~VR~~AA~~l----- 74 (244)
T 1lrv_A 13 DCRVCSFRMSLLLTGRCTPGDACVAVESGR-------Q------IDRFFRNNPHLAVQYLADPFWERRAIAVRYS----- 74 (244)
T ss_dssp CTTTSTTTTTTGGGTSSBTTTBCSSSSCHH-------H------HHHHHHHCGGGGGGGTTCSSHHHHHHHHTTS-----
T ss_pred cccCCCCcccchhcCCCCCCchHhhcCcHH-------H------HHHHHcCCHHHHHHHhcCCCHHHHHHHHHhC-----
Confidence 599999998 789966 99988642 1 3444432 1122333333455677777755
Q ss_pred ccccCCCccchhhhhhhhHHHHHHHHH
Q 022591 75 GRIVNPIYGSVGLLWSGSWQLCQAAVE 101 (294)
Q Consensus 75 aR~rDPVyGcvGiI~~Lq~Qi~qaavE 101 (294)
|+.....++..-++.+..++++
T Consensus 75 -----~~~~l~~L~~D~~~~VR~~aA~ 96 (244)
T 1lrv_A 75 -----PVEALTPLIRDSDEVVRRAVAY 96 (244)
T ss_dssp -----CGGGGGGGTTCSSHHHHHHHHT
T ss_pred -----CHHHHHHHccCcCHHHHHHHHH
Confidence 4444555556667777776654
No 2
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=10.16 E-value=1.1e+02 Score=21.74 Aligned_cols=17 Identities=24% Similarity=0.776 Sum_probs=13.9
Q ss_pred CCCChhhhhccCCCCCC
Q 022591 2 RMSCNGCRVLRKGCNEN 18 (294)
Q Consensus 2 r~~CAACK~LRRkC~~d 18 (294)
+.+|..||..+-+|...
T Consensus 1 ~~aC~~Cr~rK~kCd~~ 17 (89)
T 3coq_A 1 EQACDICRLKKLKCSKE 17 (89)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred CccchhhhccCCCCCCc
Confidence 46899999999999753
No 3
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=9.77 E-value=1.4e+02 Score=20.68 Aligned_cols=17 Identities=24% Similarity=0.855 Sum_probs=13.7
Q ss_pred CCCChhhhhccCCCCCC
Q 022591 2 RMSCNGCRVLRKGCNEN 18 (294)
Q Consensus 2 r~~CAACK~LRRkC~~d 18 (294)
..+|..|+..+-+|...
T Consensus 3 ~~AC~~Cr~rK~kCd~~ 19 (72)
T 2er8_A 3 KFACVECRQQKSKCDAH 19 (72)
T ss_dssp CCCCHHHHHTTCCCCSG
T ss_pred CchhHHHHhcccCCCCC
Confidence 46899999988888754
No 4
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=9.41 E-value=1.3e+02 Score=20.18 Aligned_cols=17 Identities=24% Similarity=0.776 Sum_probs=14.0
Q ss_pred CCCChhhhhccCCCCCC
Q 022591 2 RMSCNGCRVLRKGCNEN 18 (294)
Q Consensus 2 r~~CAACK~LRRkC~~d 18 (294)
+.+|..|+..+-+|...
T Consensus 8 ~~aC~~Cr~rK~kCd~~ 24 (66)
T 1d66_A 8 EQACDICRLKKLKCSKE 24 (66)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred CchHHHHHhCcCcCCCc
Confidence 56899999999999754
No 5
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=9.41 E-value=5.3e+02 Score=18.46 Aligned_cols=17 Identities=29% Similarity=0.944 Sum_probs=14.5
Q ss_pred CCCChhhhhccCCCCCC
Q 022591 2 RMSCNGCRVLRKGCNEN 18 (294)
Q Consensus 2 r~~CAACK~LRRkC~~d 18 (294)
+.+|..||..+-+|...
T Consensus 4 ~~aC~~Cr~rK~kCd~~ 20 (96)
T 1pyi_A 4 RTACKRCRLKKIKCDQE 20 (96)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cchhHHHhccCcCcCCc
Confidence 57899999999999864
No 6
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=8.67 E-value=87 Score=24.26 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=16.2
Q ss_pred HHHHHhcCCCCChHHHHHHh
Q 022591 50 LMNLINAGPEHLRPAVFRSL 69 (294)
Q Consensus 50 V~KmL~~lp~~~R~dA~~SL 69 (294)
++++|+.+|+.||..++++.
T Consensus 41 vTnlln~V~~~qR~~iAe~F 60 (76)
T 2jr2_A 41 VTNIIAQVPESKRVAVVDNF 60 (76)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 56788899999999887653
No 7
>1cld_A CD2-LAC9; zinc-binding domain, transcription regulation; NMR {Kluyveromyces lactis} SCOP: g.38.1.1
Probab=7.75 E-value=1.7e+02 Score=19.41 Aligned_cols=17 Identities=24% Similarity=0.775 Sum_probs=13.1
Q ss_pred CCCChhhhhccCCCCCC
Q 022591 2 RMSCNGCRVLRKGCNEN 18 (294)
Q Consensus 2 r~~CAACK~LRRkC~~d 18 (294)
+.+|..|+..+-+|...
T Consensus 9 ~~aC~~Cr~rk~kCd~~ 25 (61)
T 1cld_A 9 HQACDACRKKKWKCSKT 25 (61)
T ss_dssp -CCCHHHHHSCCCCCCC
T ss_pred chHHHHHHhcCCCcCCc
Confidence 46899999988888753
No 8
>1r1f_A Palicourein; cyclotide, plant protein; NMR {Palicourea condensata} SCOP: g.3.3.4
Probab=6.48 E-value=1.7e+02 Score=19.95 Aligned_cols=13 Identities=38% Similarity=1.078 Sum_probs=10.6
Q ss_pred CCCCCCcccc-C-CC
Q 022591 14 GCNENCSIRP-C-LQ 26 (294)
Q Consensus 14 kC~~dCilAP-Y-FP 26 (294)
-|.+.|++-| + |.
T Consensus 2 pCGEsCv~iP~Ct~t 16 (37)
T 1r1f_A 2 FCGETCRVIPVCTYS 16 (37)
T ss_dssp CCSSCCSSSCSCSSG
T ss_pred CcccceEEccccccc
Confidence 4889999999 7 65
No 9
>1bh4_A Circulin A; cyclic peptide, cystine knot, anti-HIV activity; NMR {Chassalia parviflora} SCOP: g.3.3.3 PDB: 2eri_A 2kcg_A 2knm_A 2knn_A* 2kux_A 1vb8_A 1nbj_A
Probab=6.47 E-value=2.1e+02 Score=18.62 Aligned_cols=12 Identities=42% Similarity=1.243 Sum_probs=9.4
Q ss_pred CCCCCccccCCC
Q 022591 15 CNENCSIRPCLQ 26 (294)
Q Consensus 15 C~~dCilAPYFP 26 (294)
|.+.|++-|+|-
T Consensus 1 CGEsCv~~pC~t 12 (30)
T 1bh4_A 1 CGESCVWIPCIS 12 (30)
T ss_dssp CCCCCSSSCCSH
T ss_pred CCcceeeeEccC
Confidence 778888888874
No 10
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=5.84 E-value=1.6e+02 Score=22.43 Aligned_cols=30 Identities=30% Similarity=0.101 Sum_probs=25.4
Q ss_pred ccccHHHHHhcCCCCChHHHHHHhhhhhcc
Q 022591 46 GRAGLMNLINAGPEHLRPAVFRSLLYEACG 75 (294)
Q Consensus 46 G~SNV~KmL~~lp~~~R~dA~~SL~YEA~a 75 (294)
+.+.+-+|++.|..-.|.|++..|.-++++
T Consensus 58 ~~ATv~~L~~aL~~i~R~Di~~~L~~~~~~ 87 (91)
T 2ib1_A 58 NRATLRVLEDALAAIGREDVVQVLSSPAES 87 (91)
T ss_dssp STTSTTHHHHHHHTTTCHHHHHHHTCCCCC
T ss_pred CCCcHHHHHHHHHHcCHHHHHHHHhccccc
Confidence 357888999999989999999999887764
Done!