Query 022591
Match_columns 294
No_of_seqs 143 out of 303
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 07:58:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022591.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022591hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pyia1 g.38.1.1 (A:30-71) PPR 19.2 22 0.0016 22.1 1.5 17 2-18 2-18 (42)
2 d2otaa1 a.284.1.1 (A:7-68) Hyp 15.1 31 0.0023 24.0 1.6 20 50-69 35-54 (62)
3 d3coqa1 g.38.1.1 (A:8-48) Gal4 15.0 31 0.0022 21.1 1.4 15 3-17 2-16 (41)
4 d1clda_ g.38.1.1 (A:) CD2-Lac9 13.9 38 0.0028 19.9 1.6 16 3-18 1-16 (33)
5 d2dasa1 g.39.1.17 (A:8-56) Zin 12.7 34 0.0024 22.9 1.1 16 2-17 13-37 (49)
6 d1zmec1 g.38.1.1 (C:31-66) PUT 10.0 51 0.0037 19.9 1.2 15 3-17 2-16 (36)
7 d3alca_ g.38.1.1 (A:) Ethanol 9.5 56 0.004 21.5 1.4 15 2-16 11-25 (65)
8 d1hdla_ g.68.1.2 (A:) Serine p 8.8 98 0.0072 20.7 2.5 29 73-101 21-49 (55)
9 d1qp9a1 g.38.1.1 (A:55-97) Hap 7.4 95 0.0069 19.0 1.8 17 2-18 7-23 (43)
10 d2jrxa1 a.284.1.1 (A:1-75) Unc 6.4 1.4E+02 0.01 21.2 2.4 20 50-69 41-61 (75)
No 1
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.22 E-value=22 Score=22.07 Aligned_cols=17 Identities=29% Similarity=0.944 Sum_probs=14.8
Q ss_pred CCCChhhhhccCCCCCC
Q 022591 2 RMSCNGCRVLRKGCNEN 18 (294)
Q Consensus 2 r~~CAACK~LRRkC~~d 18 (294)
|.+|..||..+.+|...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 67899999999999764
No 2
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=15.13 E-value=31 Score=24.04 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=16.3
Q ss_pred HHHHHhcCCCCChHHHHHHh
Q 022591 50 LMNLINAGPEHLRPAVFRSL 69 (294)
Q Consensus 50 V~KmL~~lp~~~R~dA~~SL 69 (294)
++++|+.+|+.+|..++++.
T Consensus 35 vTnii~~V~~~qR~~iAe~F 54 (62)
T d2otaa1 35 VTNIIAQVPESKRVAVVDNF 54 (62)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 56778889999999888754
No 3
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.97 E-value=31 Score=21.11 Aligned_cols=15 Identities=27% Similarity=0.851 Sum_probs=13.1
Q ss_pred CCChhhhhccCCCCC
Q 022591 3 MSCNGCRVLRKGCNE 17 (294)
Q Consensus 3 ~~CAACK~LRRkC~~ 17 (294)
.+|..||..+.+|..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 589999999999975
No 4
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=13.94 E-value=38 Score=19.95 Aligned_cols=16 Identities=25% Similarity=0.810 Sum_probs=13.6
Q ss_pred CCChhhhhccCCCCCC
Q 022591 3 MSCNGCRVLRKGCNEN 18 (294)
Q Consensus 3 ~~CAACK~LRRkC~~d 18 (294)
.+|..||..+.+|...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 3799999999999864
No 5
>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.70 E-value=34 Score=22.92 Aligned_cols=16 Identities=31% Similarity=0.926 Sum_probs=11.6
Q ss_pred CCCChhhh---------hccCCCCC
Q 022591 2 RMSCNGCR---------VLRKGCNE 17 (294)
Q Consensus 2 r~~CAACK---------~LRRkC~~ 17 (294)
+..|+.|| |||++++.
T Consensus 13 ~v~Ca~Ckk~lqKGQTAyqrkGs~~ 37 (49)
T d2dasa1 13 KITCANCKKPLQKGQTAYQRKGSAH 37 (49)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCC
T ss_pred EeEecccchHHhccchHHhhCCCcc
Confidence 56799998 57777653
No 6
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.99 E-value=51 Score=19.94 Aligned_cols=15 Identities=27% Similarity=0.691 Sum_probs=13.1
Q ss_pred CCChhhhhccCCCCC
Q 022591 3 MSCNGCRVLRKGCNE 17 (294)
Q Consensus 3 ~~CAACK~LRRkC~~ 17 (294)
.+|..||..+.+|..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 479999999999975
No 7
>d3alca_ g.38.1.1 (A:) Ethanol regulon transcriptional activator ALCR DNA-binding domain {Emericella nidulans, also known as Aspergillus nidulans [TaxId: 162425]}
Probab=9.52 E-value=56 Score=21.47 Aligned_cols=15 Identities=33% Similarity=0.921 Sum_probs=13.1
Q ss_pred CCCChhhhhccCCCC
Q 022591 2 RMSCNGCRVLRKGCN 16 (294)
Q Consensus 2 r~~CAACK~LRRkC~ 16 (294)
..+|-.||..+.+|.
T Consensus 11 ~~AC~~CR~rK~kCd 25 (65)
T d3alca_ 11 NHSCDPCRKGKRRCD 25 (65)
T ss_dssp CCSCHHHHHTTCCCS
T ss_pred CHhHHHHHhccccCC
Confidence 458999999999995
No 8
>d1hdla_ g.68.1.2 (A:) Serine proteinase inhibitor lekti {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.83 E-value=98 Score=20.71 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=23.9
Q ss_pred hcccccCCCccchhhhhhhhHHHHHHHHH
Q 022591 73 ACGRIVNPIYGSVGLLWSGSWQLCQAAVE 101 (294)
Q Consensus 73 A~aR~rDPVyGcvGiI~~Lq~Qi~qaavE 101 (294)
+|-|..|||-|.=|.+..-.=.+|.+..+
T Consensus 21 ~Ctr~~~Pv~g~dGkty~NkC~~C~~~~e 49 (55)
T d1hdla_ 21 FCPQDKKFFQSLDGIMFINKCATCKMILE 49 (55)
T ss_dssp CCCSCGGGGGSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCCCCCCCEeccHhHHHHHHHH
Confidence 37899999999999998887777776544
No 9
>d1qp9a1 g.38.1.1 (A:55-97) Hap1 (Cyp1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.40 E-value=95 Score=19.01 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=14.2
Q ss_pred CCCChhhhhccCCCCCC
Q 022591 2 RMSCNGCRVLRKGCNEN 18 (294)
Q Consensus 2 r~~CAACK~LRRkC~~d 18 (294)
..+|..|+-.+-+|...
T Consensus 7 ~~aC~~Cr~rKikCd~~ 23 (43)
T d1qp9a1 7 PLGCTICRKRKVKCDKL 23 (43)
T ss_dssp CSSCHHHHHHTSCCCCC
T ss_pred ccchHHHHhhccCcCCc
Confidence 46899999999999753
No 10
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=6.41 E-value=1.4e+02 Score=21.25 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=15.6
Q ss_pred HHHHHh-cCCCCChHHHHHHh
Q 022591 50 LMNLIN-AGPEHLRPAVFRSL 69 (294)
Q Consensus 50 V~KmL~-~lp~~~R~dA~~SL 69 (294)
++++|+ ++|+.+|..++++.
T Consensus 41 vTniln~~V~~~qR~~iAe~F 61 (75)
T d2jrxa1 41 VTNLINTSIAPAQRQAIANSF 61 (75)
T ss_dssp HHHHHHHHSCTTSHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 567775 69999999887653
Done!