BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022592
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
pdb|2ZFU|B Chain B, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
Length = 215
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 132/221 (59%), Gaps = 7/221 (3%)
Query: 75 MRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVK 134
M RL G FR LNE+LY+ A F E+P F +YH G+Q Q+ WP PV+ I +
Sbjct: 1 MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIAR 60
Query: 135 WLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAV 194
L+ SLV+ADFGCGD RLA S++N V FDL S DP V CDM+ PL SVDVAV
Sbjct: 61 DLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAV 120
Query: 195 FCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254
FCLSLMG N ++L+EA RVLKP G L +AEV SRF+ D F +AV LGF V
Sbjct: 121 FCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKIV 174
Query: 255 SKDFSNKMFIMFYFXXXX-XXXXXXXXIQWPELKPCLYKRR 294
SKD +N F +F F + +L+PCLYKRR
Sbjct: 175 SKDLTNSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR 215
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 144 VIADFGCGDARLAKSVKNKVFSFDLVSNDPS-----------------VIACDMSNTPLN 186
V + G G R+A + + + + + D + V+ D PL
Sbjct: 42 VFLELGVGTGRIALPLIARGYRYIALDADAAXLEVFRQKIAGVDRKVQVVQADARAIPLP 101
Query: 187 SSSV-DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLL 222
SV V V L + ++P L EA RVLKP G LL
Sbjct: 102 DESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALL 138
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 20/95 (21%)
Query: 146 ADFGCGDARLAKSVKNKVFSFDLVSNDPS-------------VIACDMSNTPLNSSSVDV 192
+ G G R A +K K+ +PS V+ N PL S D
Sbjct: 52 VEIGVGTGRFAVPLKIKI------GVEPSERXAEIARKRGVFVLKGTAENLPLKDESFDF 105
Query: 193 AVFCLSLMGINFPNY-LQEAQRVLKPSGWLLIAEV 226
A+ ++ ++ P L+EA R+LK G+L++ V
Sbjct: 106 ALXVTTICFVDDPERALKEAYRILKKGGYLIVGIV 140
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 20/102 (19%)
Query: 144 VIADFGCGDAR----LAKSVKNKVFSFDL----------------VSNDPSVIACDMSNT 183
+IAD GCG LA+ V K+ D + N I M +
Sbjct: 55 LIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDL 114
Query: 184 PLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225
S+D+ ++ I F L+E + LKP G+L ++E
Sbjct: 115 SFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSE 156
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 20/102 (19%)
Query: 144 VIADFGCGDAR----LAKSVKNKVFSFDL----------------VSNDPSVIACDMSNT 183
+IAD GCG LA+ V K+ D + N I M +
Sbjct: 50 LIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDL 109
Query: 184 PLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225
S+D+ ++ I F L+E + LKP G+L ++E
Sbjct: 110 SFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSE 151
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 130 NIIVKWLKDH--SPSLVIADFGCGDARLAKSVKNKV-----FSFDL--------VSNDPS 174
+ IV L++ + + D GCG+ + + + F D+ P
Sbjct: 72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ 131
Query: 175 VIACDMSN--TPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSR 229
V C S+ P + +S D +++ I P +E RV+KP GW++ A R
Sbjct: 132 VTFCVASSHRLPFSDTSXD------AIIRIYAPCKAEELARVVKPGGWVITATPGPR 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,013,422
Number of Sequences: 62578
Number of extensions: 301688
Number of successful extensions: 531
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 6
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)