Query 022592
Match_columns 294
No_of_seqs 252 out of 2546
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:43:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3045 Predicted RNA methylas 100.0 2.5E-46 5.5E-51 320.6 19.9 284 2-294 31-325 (325)
2 PF05148 Methyltransf_8: Hypot 100.0 8.3E-46 1.8E-50 311.5 15.5 216 71-294 2-219 (219)
3 COG2226 UbiE Methylase involve 99.9 1.3E-20 2.8E-25 164.6 16.2 155 97-255 11-221 (238)
4 PF01209 Ubie_methyltran: ubiE 99.8 1.2E-20 2.7E-25 165.6 8.6 153 98-255 8-217 (233)
5 PLN02233 ubiquinone biosynthes 99.8 1.2E-18 2.5E-23 155.9 18.5 166 98-268 34-259 (261)
6 PLN02244 tocopherol O-methyltr 99.7 4E-17 8.7E-22 151.3 16.8 119 141-259 118-279 (340)
7 TIGR02752 MenG_heptapren 2-hep 99.7 1.4E-16 3E-21 139.7 17.2 169 98-270 6-231 (231)
8 KOG1540 Ubiquinone biosynthesi 99.7 5.2E-17 1.1E-21 140.3 14.0 163 99-266 62-288 (296)
9 PLN02396 hexaprenyldihydroxybe 99.7 6.5E-17 1.4E-21 148.2 12.8 116 141-256 131-287 (322)
10 PTZ00098 phosphoethanolamine N 99.7 1.2E-16 2.7E-21 143.0 12.5 131 129-260 41-204 (263)
11 PRK15068 tRNA mo(5)U34 methylt 99.7 3.1E-16 6.7E-21 144.2 14.2 128 130-259 112-275 (322)
12 PRK11036 putative S-adenosyl-L 99.7 4.7E-16 1E-20 138.6 14.7 125 131-257 36-206 (255)
13 PF13489 Methyltransf_23: Meth 99.7 2E-16 4.4E-21 130.1 10.7 124 132-255 12-160 (161)
14 PRK10258 biotin biosynthesis p 99.7 1E-15 2.2E-20 136.0 15.8 146 99-253 9-182 (251)
15 PRK14103 trans-aconitate 2-met 99.7 1.6E-15 3.4E-20 135.2 15.6 125 129-255 18-181 (255)
16 TIGR00452 methyltransferase, p 99.7 1.1E-15 2.4E-20 139.5 14.2 127 130-258 111-273 (314)
17 PRK00216 ubiE ubiquinone/menaq 99.7 1.3E-14 2.8E-19 127.1 18.9 169 98-270 12-238 (239)
18 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.4E-15 3E-20 140.1 13.0 129 132-260 104-258 (340)
19 PLN02336 phosphoethanolamine N 99.6 1.4E-15 3.1E-20 147.1 13.2 129 129-258 255-414 (475)
20 PRK05785 hypothetical protein; 99.6 4.1E-15 8.9E-20 130.3 13.6 169 97-271 9-225 (226)
21 PF08241 Methyltransf_11: Meth 99.6 4.7E-16 1E-20 116.3 6.4 78 146-223 1-95 (95)
22 PRK15451 tRNA cmo(5)U34 methyl 99.6 6.4E-16 1.4E-20 137.2 7.3 130 141-272 56-244 (247)
23 PRK11207 tellurite resistance 99.6 1.8E-14 3.9E-19 123.6 13.6 124 130-257 20-169 (197)
24 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 6.7E-14 1.5E-18 121.3 16.2 128 131-259 30-211 (223)
25 PF08003 Methyltransf_9: Prote 99.6 2E-14 4.3E-19 128.3 12.6 127 128-256 103-265 (315)
26 PRK11873 arsM arsenite S-adeno 99.6 3.1E-14 6.7E-19 128.0 14.0 118 140-257 76-229 (272)
27 COG2227 UbiG 2-polyprenyl-3-me 99.6 1.7E-15 3.8E-20 130.7 5.2 115 141-255 59-212 (243)
28 smart00828 PKS_MT Methyltransf 99.6 3E-14 6.6E-19 124.2 12.0 118 144-262 2-148 (224)
29 TIGR02072 BioC biotin biosynth 99.6 6.5E-14 1.4E-18 122.5 14.1 114 142-256 35-174 (240)
30 TIGR00477 tehB tellurite resis 99.6 8.2E-14 1.8E-18 119.3 13.8 128 127-258 17-169 (195)
31 TIGR00740 methyltransferase, p 99.5 4.2E-15 9.1E-20 131.2 5.6 127 141-269 53-238 (239)
32 PRK01683 trans-aconitate 2-met 99.5 1.3E-13 2.8E-18 123.0 15.0 125 129-255 20-184 (258)
33 PF02353 CMAS: Mycolic acid cy 99.5 2.6E-14 5.6E-19 128.4 9.8 125 130-258 52-217 (273)
34 PRK11088 rrmA 23S rRNA methylt 99.5 1.4E-14 3.1E-19 130.3 8.0 81 141-227 85-183 (272)
35 KOG1270 Methyltransferases [Co 99.5 1.1E-14 2.5E-19 126.6 5.6 111 142-255 90-246 (282)
36 PRK08317 hypothetical protein; 99.5 2.2E-13 4.9E-18 119.0 13.9 125 132-257 11-175 (241)
37 COG2230 Cfa Cyclopropane fatty 99.5 1.3E-13 2.8E-18 122.8 11.4 126 130-259 62-224 (283)
38 TIGR03840 TMPT_Se_Te thiopurin 99.5 4.5E-13 9.8E-18 116.2 13.6 139 117-256 7-185 (213)
39 PRK12335 tellurite resistance 99.5 4.3E-13 9.3E-18 121.6 14.0 114 141-257 120-258 (287)
40 PF13847 Methyltransf_31: Meth 99.5 8.6E-14 1.9E-18 114.3 8.3 86 141-227 3-112 (152)
41 PF07021 MetW: Methionine bios 99.5 3.5E-13 7.6E-18 113.2 12.0 122 130-258 5-167 (193)
42 PRK06202 hypothetical protein; 99.5 7.9E-13 1.7E-17 116.1 14.8 113 141-256 60-220 (232)
43 TIGR02021 BchM-ChlM magnesium 99.5 6.1E-13 1.3E-17 115.8 12.0 128 130-260 43-208 (219)
44 PRK00107 gidB 16S rRNA methylt 99.5 1.8E-12 3.9E-17 110.2 14.3 102 141-255 45-166 (187)
45 PF12847 Methyltransf_18: Meth 99.5 1.2E-13 2.6E-18 107.0 6.3 84 141-225 1-111 (112)
46 PLN02336 phosphoethanolamine N 99.4 6.8E-13 1.5E-17 128.4 12.5 126 129-255 26-179 (475)
47 TIGR00537 hemK_rel_arch HemK-r 99.4 5.2E-12 1.1E-16 106.6 15.9 127 132-269 11-176 (179)
48 TIGR02081 metW methionine bios 99.4 2E-12 4.4E-17 110.5 13.3 126 130-259 5-168 (194)
49 PRK05134 bifunctional 3-demeth 99.4 2.4E-12 5.3E-17 112.9 14.2 117 141-257 48-204 (233)
50 PRK11188 rrmJ 23S rRNA methylt 99.4 2.2E-12 4.8E-17 111.7 13.6 115 132-255 42-186 (209)
51 PRK04266 fibrillarin; Provisio 99.4 4.4E-12 9.6E-17 110.9 15.4 127 140-270 71-225 (226)
52 KOG4300 Predicted methyltransf 99.4 4.2E-13 9.1E-18 112.8 7.8 91 135-226 71-183 (252)
53 TIGR02716 C20_methyl_CrtF C-20 99.4 5E-12 1.1E-16 115.6 15.1 121 132-255 141-303 (306)
54 TIGR03587 Pse_Me-ase pseudamin 99.4 7E-12 1.5E-16 108.1 14.7 94 132-228 34-145 (204)
55 PRK07580 Mg-protoporphyrin IX 99.4 5.8E-12 1.3E-16 110.1 14.2 126 130-258 50-214 (230)
56 PRK06922 hypothetical protein; 99.4 1.5E-12 3.2E-17 127.4 11.1 122 99-225 379-537 (677)
57 PRK11705 cyclopropane fatty ac 99.4 4.2E-12 9.1E-17 119.4 12.9 122 132-258 159-312 (383)
58 TIGR00138 gidB 16S rRNA methyl 99.4 8.7E-12 1.9E-16 105.6 13.5 105 141-258 42-169 (181)
59 PRK00121 trmB tRNA (guanine-N( 99.4 1.1E-12 2.4E-17 113.0 8.1 106 141-254 40-177 (202)
60 PRK13255 thiopurine S-methyltr 99.4 1.1E-11 2.5E-16 107.8 13.5 146 107-256 3-188 (218)
61 PF08242 Methyltransf_12: Meth 99.4 9E-13 2E-17 100.1 5.9 76 146-221 1-99 (99)
62 PF03848 TehB: Tellurite resis 99.4 3.4E-12 7.5E-17 108.3 9.9 121 132-256 22-167 (192)
63 TIGR01983 UbiG ubiquinone bios 99.3 9.1E-12 2E-16 108.5 11.9 117 141-257 45-202 (224)
64 PF05401 NodS: Nodulation prot 99.3 7.9E-12 1.7E-16 105.3 10.8 130 141-272 43-198 (201)
65 PTZ00146 fibrillarin; Provisio 99.3 6E-11 1.3E-15 106.6 16.9 128 140-271 131-287 (293)
66 PF13649 Methyltransf_25: Meth 99.3 1.2E-12 2.6E-17 100.0 4.2 75 145-219 1-101 (101)
67 PLN02585 magnesium protoporphy 99.3 2.4E-11 5.2E-16 111.2 12.7 132 129-264 130-305 (315)
68 KOG2361 Predicted methyltransf 99.3 1.9E-11 4.2E-16 105.3 10.1 115 144-258 74-237 (264)
69 smart00138 MeTrc Methyltransfe 99.3 2.1E-11 4.6E-16 109.2 10.4 85 141-225 99-242 (264)
70 PRK14968 putative methyltransf 99.3 2.2E-10 4.7E-15 96.8 15.7 116 132-257 15-172 (188)
71 PLN03075 nicotianamine synthas 99.3 1.1E-10 2.5E-15 105.1 14.6 132 133-272 116-276 (296)
72 PRK00517 prmA ribosomal protei 99.3 3.4E-11 7.3E-16 107.1 10.9 119 141-270 119-249 (250)
73 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.4E-11 3.1E-16 105.3 8.1 107 141-255 16-155 (194)
74 COG2264 PrmA Ribosomal protein 99.3 5.6E-11 1.2E-15 106.9 12.0 118 141-270 162-299 (300)
75 PRK08287 cobalt-precorrin-6Y C 99.3 8.1E-11 1.8E-15 100.0 12.1 111 132-255 23-153 (187)
76 PRK15001 SAM-dependent 23S rib 99.2 1.6E-10 3.4E-15 108.1 13.6 129 130-272 218-375 (378)
77 KOG3010 Methyltransferase [Gen 99.2 3.3E-11 7.1E-16 103.9 8.2 81 144-224 36-135 (261)
78 TIGR03438 probable methyltrans 99.2 3.2E-10 6.9E-15 103.6 14.6 83 141-223 63-175 (301)
79 TIGR02469 CbiT precorrin-6Y C5 99.2 1.1E-10 2.5E-15 91.5 10.0 90 132-224 11-121 (124)
80 PLN02232 ubiquinone biosynthes 99.2 4.1E-11 8.9E-16 99.4 7.8 85 172-256 27-145 (160)
81 TIGR00438 rrmJ cell division p 99.2 3.8E-10 8.3E-15 95.9 13.8 114 133-255 24-167 (188)
82 PRK13944 protein-L-isoaspartat 99.2 8.7E-11 1.9E-15 101.4 9.6 89 130-224 62-172 (205)
83 PF06325 PrmA: Ribosomal prote 99.2 1.9E-10 4.1E-15 104.1 11.6 125 132-270 151-294 (295)
84 PRK14967 putative methyltransf 99.2 5.2E-10 1.1E-14 97.7 13.9 106 141-255 36-181 (223)
85 PRK13256 thiopurine S-methyltr 99.2 7.2E-10 1.6E-14 96.6 14.6 139 116-255 15-194 (226)
86 TIGR01177 conserved hypothetic 99.2 1.9E-10 4.1E-15 106.3 11.4 107 139-257 180-314 (329)
87 PF05724 TPMT: Thiopurine S-me 99.2 1.5E-10 3.3E-15 100.7 9.9 141 116-257 9-189 (218)
88 PF05175 MTS: Methyltransferas 99.2 1.8E-10 3.9E-15 96.5 9.9 94 130-225 21-140 (170)
89 KOG1271 Methyltransferases [Ge 99.2 5.6E-10 1.2E-14 92.4 12.4 104 143-255 69-202 (227)
90 TIGR03534 RF_mod_PrmC protein- 99.2 3.7E-10 8E-15 99.9 12.2 105 142-256 88-239 (251)
91 COG4106 Tam Trans-aconitate me 99.1 5.9E-11 1.3E-15 100.7 6.2 127 127-255 17-183 (257)
92 PRK13942 protein-L-isoaspartat 99.1 2.4E-10 5.2E-15 99.2 9.9 89 130-224 66-175 (212)
93 COG4123 Predicted O-methyltran 99.1 8.4E-10 1.8E-14 96.9 13.1 132 132-272 35-214 (248)
94 PRK00377 cbiT cobalt-precorrin 99.1 6.9E-10 1.5E-14 95.2 12.3 105 140-254 39-166 (198)
95 TIGR00406 prmA ribosomal prote 99.1 3.6E-10 7.9E-15 102.5 10.9 104 141-257 159-282 (288)
96 TIGR00080 pimt protein-L-isoas 99.1 4.6E-10 1E-14 97.5 10.3 89 130-224 67-176 (215)
97 PRK09489 rsmC 16S ribosomal RN 99.1 9.5E-10 2.1E-14 102.0 12.5 128 130-272 186-338 (342)
98 COG4976 Predicted methyltransf 99.1 8.3E-11 1.8E-15 100.6 4.8 118 141-258 125-265 (287)
99 TIGR03533 L3_gln_methyl protei 99.1 3.2E-09 7E-14 96.1 15.4 115 141-266 121-282 (284)
100 PF06080 DUF938: Protein of un 99.1 1.2E-09 2.6E-14 93.1 11.5 127 144-270 28-204 (204)
101 PHA03411 putative methyltransf 99.1 1.5E-09 3.3E-14 96.6 12.5 112 141-255 64-211 (279)
102 PRK14121 tRNA (guanine-N(7)-)- 99.1 7E-10 1.5E-14 103.6 10.0 94 131-225 113-235 (390)
103 TIGR00536 hemK_fam HemK family 99.1 4.1E-09 9E-14 95.5 14.5 103 143-255 116-266 (284)
104 KOG1541 Predicted protein carb 99.0 1.3E-09 2.8E-14 92.8 10.0 117 130-252 38-181 (270)
105 PF05891 Methyltransf_PK: AdoM 99.0 4.6E-10 9.9E-15 96.2 7.3 161 97-258 7-201 (218)
106 PRK14966 unknown domain/N5-glu 99.0 8.4E-09 1.8E-13 97.1 15.7 122 125-255 234-402 (423)
107 PRK09328 N5-glutamine S-adenos 99.0 5.7E-09 1.2E-13 93.7 14.0 106 141-256 108-260 (275)
108 PF13659 Methyltransf_26: Meth 99.0 2.6E-10 5.7E-15 88.9 4.5 84 142-225 1-115 (117)
109 TIGR03704 PrmC_rel_meth putati 99.0 7.4E-09 1.6E-13 92.1 13.8 108 142-258 87-240 (251)
110 COG2242 CobL Precorrin-6B meth 99.0 6.6E-09 1.4E-13 87.0 12.4 114 132-257 26-160 (187)
111 PF05219 DREV: DREV methyltran 99.0 4.5E-09 9.7E-14 92.2 11.8 115 142-256 95-238 (265)
112 PF11968 DUF3321: Putative met 99.0 5.6E-09 1.2E-13 89.3 12.2 129 143-273 53-195 (219)
113 PRK00312 pcm protein-L-isoaspa 99.0 2.5E-09 5.4E-14 92.6 10.1 89 131-225 69-175 (212)
114 KOG1331 Predicted methyltransf 99.0 1.1E-09 2.3E-14 96.9 7.1 100 127-226 31-144 (293)
115 PRK11805 N5-glutamine S-adenos 99.0 1.9E-08 4.2E-13 92.0 15.2 103 143-256 135-284 (307)
116 COG2813 RsmC 16S RNA G1207 met 99.0 1.1E-08 2.3E-13 91.8 12.7 127 129-270 147-299 (300)
117 cd02440 AdoMet_MTases S-adenos 98.9 6E-09 1.3E-13 77.5 7.8 81 144-224 1-103 (107)
118 PF00891 Methyltransf_2: O-met 98.9 1.2E-08 2.7E-13 89.9 10.9 84 141-227 100-201 (241)
119 PRK14901 16S rRNA methyltransf 98.9 3E-08 6.4E-13 95.1 14.3 110 140-254 251-409 (434)
120 PRK01544 bifunctional N5-gluta 98.9 2.5E-08 5.4E-13 97.2 13.8 104 142-255 139-290 (506)
121 KOG2940 Predicted methyltransf 98.9 5.4E-09 1.2E-13 89.6 6.9 117 142-258 73-227 (325)
122 PRK07402 precorrin-6B methylas 98.9 1.9E-08 4.2E-13 86.0 10.6 91 132-226 32-143 (196)
123 PF03141 Methyltransf_29: Puta 98.8 3.4E-09 7.3E-14 100.4 5.4 123 144-271 120-261 (506)
124 PF01135 PCMT: Protein-L-isoas 98.8 7.7E-09 1.7E-13 89.4 6.8 90 129-224 61-171 (209)
125 COG2518 Pcm Protein-L-isoaspar 98.8 1.5E-08 3.2E-13 86.7 8.3 92 128-225 60-169 (209)
126 PRK14904 16S rRNA methyltransf 98.8 1.1E-07 2.3E-12 91.6 15.0 117 132-254 241-402 (445)
127 PRK10901 16S rRNA methyltransf 98.8 8.3E-08 1.8E-12 91.8 13.5 116 134-255 238-398 (427)
128 PRK13943 protein-L-isoaspartat 98.8 2.7E-08 5.8E-13 91.4 9.7 88 131-224 71-179 (322)
129 PF07942 N2227: N2227-like pro 98.8 1.8E-07 3.9E-12 83.5 14.2 117 142-258 57-242 (270)
130 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.8 3.7E-08 8.1E-13 87.3 9.5 117 141-257 56-238 (256)
131 PRK14902 16S rRNA methyltransf 98.8 1.5E-07 3.2E-12 90.5 14.2 110 140-255 249-405 (444)
132 PRK14903 16S rRNA methyltransf 98.8 7.7E-08 1.7E-12 92.1 12.1 119 132-255 228-392 (431)
133 COG2890 HemK Methylase of poly 98.7 5E-07 1.1E-11 81.7 15.4 115 144-269 113-275 (280)
134 PHA03412 putative methyltransf 98.7 1.5E-07 3.3E-12 82.2 11.4 112 141-254 49-198 (241)
135 TIGR00446 nop2p NOL1/NOP2/sun 98.7 5.2E-08 1.1E-12 87.3 8.8 87 140-226 70-200 (264)
136 smart00650 rADc Ribosomal RNA 98.7 9.1E-08 2E-12 79.9 9.6 92 130-224 3-112 (169)
137 PRK04457 spermidine synthase; 98.7 6.8E-08 1.5E-12 86.5 9.1 84 141-225 66-177 (262)
138 PF03291 Pox_MCEL: mRNA cappin 98.7 2.7E-08 5.8E-13 91.8 6.5 85 141-225 62-186 (331)
139 PRK13168 rumA 23S rRNA m(5)U19 98.7 3.5E-07 7.5E-12 88.0 14.4 109 132-256 289-422 (443)
140 PF01739 CheR: CheR methyltran 98.7 4.5E-08 9.7E-13 83.8 7.3 84 141-224 31-174 (196)
141 TIGR00563 rsmB ribosomal RNA s 98.7 1.8E-07 3.8E-12 89.6 11.7 115 132-252 230-391 (426)
142 KOG1975 mRNA cap methyltransfe 98.7 4.5E-07 9.8E-12 81.5 13.0 98 141-249 117-250 (389)
143 PRK00811 spermidine synthase; 98.6 1.1E-07 2.3E-12 86.2 8.3 84 141-224 76-190 (283)
144 KOG3191 Predicted N6-DNA-methy 98.6 1.7E-06 3.8E-11 71.9 13.8 120 142-270 44-208 (209)
145 PF02390 Methyltransf_4: Putat 98.6 9E-08 1.9E-12 82.0 6.6 82 144-225 20-133 (195)
146 PRK01581 speE spermidine synth 98.6 3.6E-07 7.7E-12 84.6 10.7 126 141-270 150-313 (374)
147 KOG3178 Hydroxyindole-O-methyl 98.6 4.3E-07 9.4E-12 82.8 10.9 125 143-270 179-342 (342)
148 PLN02672 methionine S-methyltr 98.6 6.3E-07 1.4E-11 93.4 12.8 122 126-256 99-301 (1082)
149 KOG1499 Protein arginine N-met 98.6 6.9E-08 1.5E-12 87.9 5.0 83 141-223 60-165 (346)
150 TIGR00478 tly hemolysin TlyA f 98.6 3.5E-07 7.7E-12 80.0 9.1 121 130-259 64-218 (228)
151 PLN02781 Probable caffeoyl-CoA 98.5 1.7E-07 3.6E-12 82.6 6.9 94 130-225 57-178 (234)
152 COG2519 GCD14 tRNA(1-methylade 98.5 7.1E-07 1.5E-11 78.2 10.4 112 130-255 84-217 (256)
153 PRK10611 chemotaxis methyltran 98.5 4.5E-07 9.7E-12 82.0 9.4 83 142-224 116-261 (287)
154 PF05185 PRMT5: PRMT5 arginine 98.5 5E-07 1.1E-11 86.6 10.1 116 96-223 149-295 (448)
155 PRK11783 rlmL 23S rRNA m(2)G24 98.5 4.6E-07 9.9E-12 91.8 10.0 108 141-257 538-679 (702)
156 PRK10909 rsmD 16S rRNA m(2)G96 98.5 4.8E-07 1E-11 77.7 8.7 93 132-224 44-158 (199)
157 PF12147 Methyltransf_20: Puta 98.5 3.5E-06 7.7E-11 75.2 13.8 139 132-270 126-311 (311)
158 PRK03522 rumB 23S rRNA methylu 98.5 1.9E-06 4E-11 79.3 12.3 115 141-268 173-311 (315)
159 PRK15128 23S rRNA m(5)C1962 me 98.5 7.2E-07 1.6E-11 84.4 9.4 102 141-249 220-356 (396)
160 PRK03612 spermidine synthase; 98.5 6.8E-07 1.5E-11 87.6 9.5 109 141-253 297-439 (521)
161 COG2521 Predicted archaeal met 98.4 3.3E-06 7.1E-11 72.9 11.6 129 127-257 118-276 (287)
162 PF08704 GCD14: tRNA methyltra 98.4 1E-06 2.2E-11 78.0 8.8 113 131-256 31-169 (247)
163 TIGR00417 speE spermidine synt 98.4 1.2E-06 2.7E-11 78.7 8.3 83 142-224 73-185 (270)
164 COG0293 FtsJ 23S rRNA methylas 98.4 1.3E-05 2.8E-10 68.6 14.0 107 140-255 44-180 (205)
165 PLN02366 spermidine synthase 98.4 1.6E-06 3.4E-11 79.4 8.6 127 141-271 91-254 (308)
166 TIGR00479 rumA 23S rRNA (uraci 98.4 3.8E-06 8.3E-11 80.5 11.7 107 141-258 292-420 (431)
167 COG1041 Predicted DNA modifica 98.3 8.5E-06 1.9E-10 74.7 12.7 115 129-256 185-328 (347)
168 KOG2899 Predicted methyltransf 98.3 1.2E-06 2.6E-11 76.0 6.6 112 141-255 58-254 (288)
169 COG1352 CheR Methylase of chem 98.3 4.9E-06 1.1E-10 74.4 10.6 83 142-224 97-240 (268)
170 COG2263 Predicted RNA methylas 98.3 1.7E-05 3.7E-10 66.6 12.3 101 140-256 44-166 (198)
171 TIGR02085 meth_trns_rumB 23S r 98.3 1.7E-05 3.7E-10 74.6 13.5 83 141-225 233-334 (374)
172 KOG1269 SAM-dependent methyltr 98.3 9.2E-07 2E-11 82.4 4.7 89 140-228 109-218 (364)
173 KOG2904 Predicted methyltransf 98.2 1E-05 2.2E-10 71.5 9.9 85 141-225 148-285 (328)
174 COG0220 Predicted S-adenosylme 98.2 3.6E-06 7.9E-11 73.6 7.2 83 143-225 50-164 (227)
175 PLN02476 O-methyltransferase 98.2 5.9E-06 1.3E-10 74.3 8.7 95 129-225 106-228 (278)
176 PRK14896 ksgA 16S ribosomal RN 98.2 1E-05 2.2E-10 72.3 9.3 70 129-201 18-103 (258)
177 PF10294 Methyltransf_16: Puta 98.2 6.2E-06 1.3E-10 69.2 7.3 86 140-225 44-156 (173)
178 PRK00274 ksgA 16S ribosomal RN 98.1 4.6E-06 1E-10 75.1 6.7 70 129-199 31-115 (272)
179 PRK01544 bifunctional N5-gluta 98.1 6E-06 1.3E-10 80.6 7.8 106 141-254 347-484 (506)
180 PF01596 Methyltransf_3: O-met 98.1 3.4E-06 7.3E-11 72.8 5.0 92 132-225 36-155 (205)
181 COG0500 SmtA SAM-dependent met 98.1 2.1E-05 4.6E-10 61.7 8.9 84 145-228 52-158 (257)
182 KOG3987 Uncharacterized conser 98.1 1.2E-06 2.6E-11 74.3 1.2 114 142-255 113-257 (288)
183 COG4122 Predicted O-methyltran 98.1 2.6E-05 5.6E-10 67.6 9.4 97 129-227 47-168 (219)
184 KOG1661 Protein-L-isoaspartate 98.1 1.2E-05 2.5E-10 68.5 6.8 89 132-225 72-193 (237)
185 KOG1500 Protein arginine N-met 98.0 6.7E-06 1.4E-10 74.5 5.5 83 141-224 177-281 (517)
186 TIGR00095 RNA methyltransferas 98.0 2.8E-05 6E-10 66.3 9.1 83 141-223 49-157 (189)
187 TIGR00755 ksgA dimethyladenosi 98.0 2.6E-05 5.6E-10 69.5 8.8 68 129-199 18-104 (253)
188 PLN02589 caffeoyl-CoA O-methyl 98.0 1.5E-05 3.3E-10 70.6 6.9 95 129-225 67-190 (247)
189 PF01728 FtsJ: FtsJ-like methy 98.0 1.3E-05 2.7E-10 67.6 5.5 106 141-255 23-160 (181)
190 TIGR03439 methyl_EasF probable 97.9 0.00059 1.3E-08 62.8 16.4 84 141-224 76-196 (319)
191 COG3963 Phospholipid N-methylt 97.9 7.3E-05 1.6E-09 61.5 8.9 96 131-227 39-158 (194)
192 PF03141 Methyltransf_29: Puta 97.9 0.00011 2.3E-09 70.3 11.4 139 101-260 337-493 (506)
193 KOG2798 Putative trehalase [Ca 97.9 0.00011 2.4E-09 66.1 10.5 70 188-257 258-336 (369)
194 PF01170 UPF0020: Putative RNA 97.9 5.4E-05 1.2E-09 63.9 8.1 111 136-259 23-172 (179)
195 PRK04148 hypothetical protein; 97.9 8E-05 1.7E-09 59.6 8.3 83 141-228 16-112 (134)
196 PLN02823 spermine synthase 97.9 4.7E-05 1E-09 70.5 7.9 82 142-223 104-218 (336)
197 PRK11727 23S rRNA mA1618 methy 97.9 0.00021 4.5E-09 65.7 12.0 115 141-255 114-289 (321)
198 PF02527 GidB: rRNA small subu 97.9 2.8E-05 6E-10 65.9 5.8 103 144-256 51-173 (184)
199 PTZ00338 dimethyladenosine tra 97.9 3.2E-05 6.9E-10 70.4 6.5 71 130-203 26-115 (294)
200 COG4798 Predicted methyltransf 97.8 0.00013 2.7E-09 61.6 9.2 115 141-256 48-203 (238)
201 PRK04338 N(2),N(2)-dimethylgua 97.8 5E-05 1.1E-09 71.6 7.6 80 142-224 58-157 (382)
202 PRK11760 putative 23S rRNA C24 97.7 0.00077 1.7E-08 62.0 13.1 76 140-218 210-296 (357)
203 COG1189 Predicted rRNA methyla 97.7 0.00067 1.5E-08 59.1 12.1 127 130-259 68-225 (245)
204 PRK11933 yebU rRNA (cytosine-C 97.7 0.00019 4.1E-09 69.4 9.5 86 140-225 112-242 (470)
205 PF08123 DOT1: Histone methyla 97.7 4.3E-05 9.4E-10 65.8 4.3 93 130-223 32-156 (205)
206 COG5459 Predicted rRNA methyla 97.7 7.8E-05 1.7E-09 68.1 5.8 84 143-227 115-227 (484)
207 KOG4589 Cell division protein 97.6 0.0012 2.5E-08 55.6 11.7 107 140-255 68-205 (232)
208 COG4627 Uncharacterized protei 97.6 2.7E-05 5.9E-10 63.2 2.0 78 144-225 5-86 (185)
209 PF03602 Cons_hypoth95: Conser 97.6 3.8E-05 8.1E-10 65.1 2.9 95 130-224 30-152 (183)
210 KOG3420 Predicted RNA methylas 97.6 7.2E-05 1.6E-09 60.2 4.2 61 141-201 48-126 (185)
211 PF09243 Rsm22: Mitochondrial 97.6 0.00028 6.2E-09 63.6 8.6 106 142-255 34-165 (274)
212 COG1092 Predicted SAM-dependen 97.6 0.00035 7.6E-09 65.8 9.2 93 136-228 212-339 (393)
213 PF04816 DUF633: Family of unk 97.6 0.001 2.2E-08 57.4 11.4 118 145-274 1-143 (205)
214 PRK05031 tRNA (uracil-5-)-meth 97.6 0.00082 1.8E-08 63.0 11.7 78 143-224 208-319 (362)
215 TIGR02143 trmA_only tRNA (urac 97.6 0.00086 1.9E-08 62.7 11.7 78 143-224 199-310 (353)
216 PF02475 Met_10: Met-10+ like- 97.6 0.00015 3.2E-09 62.3 5.7 78 141-222 101-199 (200)
217 COG0421 SpeE Spermidine syntha 97.5 0.00044 9.6E-09 62.4 8.5 82 143-224 78-189 (282)
218 COG0357 GidB Predicted S-adeno 97.5 0.00065 1.4E-08 58.8 9.1 105 142-255 68-192 (215)
219 PF01269 Fibrillarin: Fibrilla 97.5 0.00085 1.8E-08 58.0 9.5 115 140-255 72-209 (229)
220 PF02384 N6_Mtase: N-6 DNA Met 97.5 0.00018 3.8E-09 65.9 5.7 144 125-272 31-234 (311)
221 PRK00536 speE spermidine synth 97.4 0.00079 1.7E-08 60.1 8.9 103 141-255 72-196 (262)
222 KOG2352 Predicted spermine/spe 97.4 0.00042 9.1E-09 66.1 7.0 83 144-226 51-162 (482)
223 COG2520 Predicted methyltransf 97.4 0.0027 5.8E-08 58.7 12.0 109 141-254 188-316 (341)
224 COG0030 KsgA Dimethyladenosine 97.3 0.00054 1.2E-08 60.9 6.6 74 127-201 17-107 (259)
225 PF01564 Spermine_synth: Sperm 97.3 0.0014 3E-08 58.2 9.1 110 141-254 76-216 (246)
226 PF10672 Methyltrans_SAM: S-ad 97.3 0.00054 1.2E-08 62.0 6.4 103 141-250 123-256 (286)
227 PF03492 Methyltransf_7: SAM d 97.2 0.0032 7E-08 58.4 11.1 86 141-226 16-184 (334)
228 PLN02668 indole-3-acetate carb 97.2 0.0036 7.8E-08 58.9 11.3 42 185-226 158-238 (386)
229 COG0144 Sun tRNA and rRNA cyto 97.2 0.0074 1.6E-07 56.5 13.1 122 130-256 145-315 (355)
230 PF03059 NAS: Nicotianamine sy 97.1 0.0041 8.8E-08 55.9 10.1 121 143-272 122-273 (276)
231 COG0742 N6-adenine-specific me 97.1 0.0021 4.6E-08 54.3 7.5 95 130-224 31-153 (187)
232 TIGR00308 TRM1 tRNA(guanine-26 97.1 0.0068 1.5E-07 57.1 11.5 79 143-224 46-146 (374)
233 COG1889 NOP1 Fibrillarin-like 97.1 0.028 6.1E-07 48.0 13.8 112 140-255 75-211 (231)
234 KOG2915 tRNA(1-methyladenosine 97.0 0.0072 1.6E-07 53.7 10.4 115 129-255 94-232 (314)
235 KOG1663 O-methyltransferase [S 96.9 0.0051 1.1E-07 53.4 8.3 82 141-225 73-183 (237)
236 COG2265 TrmA SAM-dependent met 96.9 0.016 3.5E-07 55.6 12.4 112 130-256 283-418 (432)
237 PF04672 Methyltransf_19: S-ad 96.9 0.019 4.1E-07 51.3 11.8 125 129-255 56-233 (267)
238 COG2384 Predicted SAM-dependen 96.9 0.027 5.9E-07 48.6 12.3 130 129-272 7-160 (226)
239 PRK00050 16S rRNA m(4)C1402 me 96.9 0.0015 3.3E-08 59.4 4.9 70 129-199 8-100 (296)
240 COG4076 Predicted RNA methylas 96.9 0.0023 4.9E-08 53.9 5.5 80 142-224 33-134 (252)
241 KOG1709 Guanidinoacetate methy 96.8 0.0047 1E-07 53.1 7.5 104 120-225 82-206 (271)
242 TIGR02987 met_A_Alw26 type II 96.8 0.0084 1.8E-07 59.0 10.3 103 142-248 32-215 (524)
243 PRK11783 rlmL 23S rRNA m(2)G24 96.7 0.0058 1.3E-07 62.3 8.6 84 141-224 190-346 (702)
244 KOG0820 Ribosomal RNA adenine 96.7 0.0066 1.4E-07 54.0 7.3 57 141-199 58-133 (315)
245 KOG3201 Uncharacterized conser 96.6 0.0018 3.9E-08 53.1 3.3 107 142-255 30-163 (201)
246 PF07091 FmrO: Ribosomal RNA m 96.6 0.018 3.9E-07 50.8 9.3 133 129-264 92-250 (251)
247 PF00398 RrnaAD: Ribosomal RNA 96.6 0.0058 1.3E-07 54.7 6.5 86 129-217 19-123 (262)
248 COG4262 Predicted spermidine s 96.5 0.023 5.1E-07 52.6 9.8 127 142-272 290-453 (508)
249 PF05958 tRNA_U5-meth_tr: tRNA 96.5 0.011 2.3E-07 55.3 8.0 51 130-182 187-255 (352)
250 PF13578 Methyltransf_24: Meth 96.4 0.00072 1.6E-08 51.6 -0.1 80 146-225 1-105 (106)
251 COG3897 Predicted methyltransf 96.4 0.0076 1.7E-07 51.1 5.9 79 141-223 79-176 (218)
252 KOG1099 SAM-dependent methyltr 96.0 0.015 3.3E-07 50.4 5.6 82 143-224 43-162 (294)
253 PF09445 Methyltransf_15: RNA 95.9 0.0031 6.8E-08 52.3 1.1 56 144-199 2-79 (163)
254 KOG0822 Protein kinase inhibit 95.7 0.033 7.1E-07 53.9 7.0 123 99-232 334-485 (649)
255 KOG3115 Methyltransferase-like 95.6 0.072 1.6E-06 45.6 7.9 82 143-224 62-182 (249)
256 PF06962 rRNA_methylase: Putat 95.5 0.014 3E-07 47.1 3.4 98 162-259 1-126 (140)
257 PF04989 CmcI: Cephalosporin h 95.5 0.14 3.1E-06 44.0 9.7 114 141-254 32-186 (206)
258 PF13679 Methyltransf_32: Meth 95.4 0.028 6.1E-07 45.3 4.8 31 140-170 24-63 (141)
259 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.3 0.029 6.3E-07 50.8 5.2 111 140-255 84-245 (283)
260 KOG2187 tRNA uracil-5-methyltr 95.1 0.039 8.6E-07 53.2 5.5 47 136-182 378-442 (534)
261 PRK13699 putative methylase; P 95.1 0.061 1.3E-06 47.1 6.3 73 174-255 3-93 (227)
262 cd00315 Cyt_C5_DNA_methylase C 94.8 0.41 8.9E-06 43.1 11.2 110 144-255 2-140 (275)
263 PF05430 Methyltransf_30: S-ad 94.8 0.028 6.1E-07 44.5 3.2 74 174-259 34-112 (124)
264 PF07757 AdoMet_MTase: Predict 94.7 0.078 1.7E-06 40.6 5.2 29 142-170 59-90 (112)
265 COG0116 Predicted N6-adenine-s 94.5 0.2 4.3E-06 47.0 8.4 90 135-224 185-343 (381)
266 KOG2793 Putative N2,N2-dimethy 94.4 0.39 8.4E-06 42.6 9.7 83 142-224 87-198 (248)
267 KOG2730 Methylase [General fun 94.1 0.036 7.8E-07 47.9 2.5 78 142-219 95-196 (263)
268 KOG1122 tRNA and rRNA cytosine 94.0 0.47 1E-05 44.9 9.8 109 141-255 241-397 (460)
269 KOG1596 Fibrillarin and relate 93.8 0.79 1.7E-05 40.4 10.1 114 140-255 155-292 (317)
270 COG1064 AdhP Zn-dependent alco 93.7 0.67 1.4E-05 43.0 10.1 82 140-228 165-262 (339)
271 KOG2920 Predicted methyltransf 93.7 0.049 1.1E-06 48.8 2.6 85 140-224 115-233 (282)
272 PF03269 DUF268: Caenorhabditi 93.6 0.14 2.9E-06 42.3 4.8 67 187-255 61-142 (177)
273 KOG4058 Uncharacterized conser 93.5 0.18 3.8E-06 41.0 5.2 106 114-224 43-171 (199)
274 PRK01747 mnmC bifunctional tRN 93.2 0.44 9.5E-06 48.3 9.0 57 188-256 165-225 (662)
275 PF06859 Bin3: Bicoid-interact 93.0 0.038 8.3E-07 42.5 0.8 66 189-255 1-89 (110)
276 TIGR01444 fkbM_fam methyltrans 92.8 0.083 1.8E-06 42.1 2.5 27 144-170 1-32 (143)
277 TIGR00006 S-adenosyl-methyltra 92.0 0.29 6.4E-06 44.7 5.3 70 129-199 9-102 (305)
278 COG4301 Uncharacterized conser 91.8 3.2 7E-05 36.8 11.2 90 135-224 72-192 (321)
279 PRK11524 putative methyltransf 91.5 0.25 5.4E-06 44.7 4.3 54 171-224 7-79 (284)
280 COG0275 Predicted S-adenosylme 91.3 1.6 3.6E-05 39.6 9.1 41 129-170 12-58 (314)
281 PF04445 SAM_MT: Putative SAM- 91.1 0.2 4.2E-06 44.0 3.0 72 130-201 63-163 (234)
282 KOG1098 Putative SAM-dependent 91.0 0.34 7.5E-06 47.9 4.9 84 140-223 43-156 (780)
283 PRK10742 putative methyltransf 90.2 0.55 1.2E-05 41.6 5.1 72 130-202 76-177 (250)
284 COG0286 HsdM Type I restrictio 90.1 5 0.00011 39.3 12.2 120 125-248 171-346 (489)
285 PRK10458 DNA cytosine methylas 89.6 6.5 0.00014 38.3 12.3 111 142-254 88-255 (467)
286 PTZ00357 methyltransferase; Pr 89.3 1.5 3.3E-05 44.2 7.7 125 96-220 638-830 (1072)
287 TIGR00027 mthyl_TIGR00027 meth 89.3 8.5 0.00018 34.3 12.1 114 143-256 83-248 (260)
288 PF00145 DNA_methylase: C-5 cy 89.1 1 2.2E-05 40.9 6.2 109 144-255 2-139 (335)
289 PF11312 DUF3115: Protein of u 89.1 0.39 8.6E-06 43.8 3.4 58 173-230 177-247 (315)
290 PF11599 AviRa: RRNA methyltra 88.8 0.67 1.5E-05 40.1 4.4 29 142-170 52-87 (246)
291 PF11253 DUF3052: Protein of u 85.0 14 0.0003 29.3 9.4 79 187-268 43-121 (127)
292 COG0270 Dcm Site-specific DNA 84.9 5.5 0.00012 36.8 8.6 110 143-255 4-144 (328)
293 PF05971 Methyltransf_10: Prot 84.7 2.8 6.2E-05 38.2 6.4 60 142-201 103-189 (299)
294 TIGR00675 dcm DNA-methyltransf 84.1 1.8 4E-05 39.7 5.1 109 145-255 1-137 (315)
295 COG1063 Tdh Threonine dehydrog 83.6 1.7 3.7E-05 40.5 4.7 82 141-227 168-271 (350)
296 KOG2198 tRNA cytosine-5-methyl 83.5 13 0.00029 34.8 10.2 109 140-253 154-319 (375)
297 PF01861 DUF43: Protein of unk 83.4 12 0.00026 33.0 9.5 112 141-258 44-178 (243)
298 PF10354 DUF2431: Domain of un 82.9 12 0.00027 30.9 9.1 72 178-255 60-149 (166)
299 cd08283 FDH_like_1 Glutathione 82.7 7 0.00015 36.7 8.5 87 140-226 183-307 (386)
300 PF03686 UPF0146: Uncharacteri 81.6 4 8.6E-05 32.3 5.3 95 132-230 4-107 (127)
301 PF12692 Methyltransf_17: S-ad 81.3 1.9 4.1E-05 35.1 3.4 91 132-224 21-133 (160)
302 PF05711 TylF: Macrocin-O-meth 80.0 5.8 0.00013 35.2 6.4 44 204-254 191-234 (248)
303 PHA01634 hypothetical protein 80.0 3.7 7.9E-05 32.7 4.5 30 141-170 28-61 (156)
304 cd08254 hydroxyacyl_CoA_DH 6-h 79.5 15 0.00032 33.2 9.3 82 140-226 164-264 (338)
305 PRK09424 pntA NAD(P) transhydr 79.3 11 0.00023 37.2 8.6 86 141-226 164-286 (509)
306 KOG2539 Mitochondrial/chloropl 79.0 2.5 5.3E-05 40.7 3.9 83 143-225 202-315 (491)
307 KOG1562 Spermidine synthase [A 77.6 4.8 0.00011 36.6 5.2 85 141-225 121-236 (337)
308 COG1568 Predicted methyltransf 76.8 1.9 4.2E-05 38.8 2.4 107 141-255 152-285 (354)
309 KOG2651 rRNA adenine N-6-methy 76.7 3.9 8.5E-05 38.4 4.5 39 132-170 144-186 (476)
310 PRK09880 L-idonate 5-dehydroge 76.7 6.8 0.00015 36.0 6.2 81 141-226 169-267 (343)
311 PF01555 N6_N4_Mtase: DNA meth 75.4 3.5 7.5E-05 35.0 3.7 31 140-170 190-223 (231)
312 KOG2671 Putative RNA methylase 75.2 3.5 7.6E-05 38.3 3.7 96 129-224 196-353 (421)
313 PF11899 DUF3419: Protein of u 75.2 3 6.5E-05 39.4 3.4 54 172-225 276-334 (380)
314 KOG1253 tRNA methyltransferase 73.8 5.7 0.00012 38.6 4.9 134 136-272 104-286 (525)
315 COG3510 CmcI Cephalosporin hyd 73.8 21 0.00046 30.6 7.7 116 134-250 63-211 (237)
316 PF06460 NSP13: Coronavirus NS 73.6 22 0.00047 31.9 8.1 94 130-224 46-168 (299)
317 PRK11524 putative methyltransf 73.4 6.2 0.00014 35.6 4.9 44 128-171 194-241 (284)
318 cd05188 MDR Medium chain reduc 73.2 11 0.00025 32.4 6.5 82 140-226 133-233 (271)
319 KOG3924 Putative protein methy 72.9 6.3 0.00014 37.2 4.8 95 130-225 182-308 (419)
320 COG2933 Predicted SAM-dependen 72.6 16 0.00034 32.9 7.0 76 140-218 210-296 (358)
321 PF10237 N6-adenineMlase: Prob 70.7 59 0.0013 26.8 11.4 95 129-224 12-122 (162)
322 PRK13699 putative methylase; P 70.6 8.4 0.00018 33.6 4.9 44 127-170 148-195 (227)
323 PF01795 Methyltransf_5: MraW 68.8 8.3 0.00018 35.4 4.6 70 129-199 9-103 (310)
324 PF02636 Methyltransf_28: Puta 68.3 6.9 0.00015 34.5 4.0 28 143-170 20-60 (252)
325 TIGR01202 bchC 2-desacetyl-2-h 65.9 16 0.00035 33.0 6.0 79 141-226 144-232 (308)
326 PF01206 TusA: Sulfurtransfera 65.0 41 0.00088 23.0 6.7 55 205-267 14-68 (70)
327 KOG2918 Carboxymethyl transfer 64.2 85 0.0018 29.0 10.0 21 237-257 256-276 (335)
328 cd08230 glucose_DH Glucose deh 63.0 24 0.00052 32.5 6.7 79 141-226 172-270 (355)
329 cd03423 SirA SirA (also known 62.3 49 0.0011 22.8 7.2 54 206-267 14-67 (69)
330 KOG0024 Sorbitol dehydrogenase 61.8 46 0.001 30.8 7.9 84 140-228 168-276 (354)
331 PRK00299 sulfur transfer prote 61.4 58 0.0013 23.4 9.6 70 190-267 8-77 (81)
332 cd08232 idonate-5-DH L-idonate 60.6 27 0.00059 31.6 6.5 80 141-225 165-262 (339)
333 cd03420 SirA_RHOD_Pry_redox Si 60.0 54 0.0012 22.6 7.2 54 205-266 13-66 (69)
334 PF08484 Methyltransf_14: C-me 59.9 77 0.0017 26.0 8.4 79 141-224 67-158 (160)
335 PF02254 TrkA_N: TrkA-N domain 58.0 76 0.0017 23.7 7.9 89 150-254 4-113 (116)
336 cd00291 SirA_YedF_YeeD SirA, Y 57.5 57 0.0012 22.1 7.1 51 208-266 16-66 (69)
337 KOG1501 Arginine N-methyltrans 56.9 8.4 0.00018 37.0 2.4 28 143-170 68-99 (636)
338 PF06016 Reovirus_L2: Reovirus 56.4 25 0.00053 38.2 5.9 79 142-220 823-920 (1289)
339 PF01555 N6_N4_Mtase: DNA meth 55.5 20 0.00043 30.2 4.5 45 204-255 35-80 (231)
340 COG0686 Ald Alanine dehydrogen 55.3 19 0.00041 33.2 4.3 83 142-224 168-267 (371)
341 PF14740 DUF4471: Domain of un 55.3 9.2 0.0002 34.8 2.4 63 187-255 220-286 (289)
342 cd03422 YedF YedF is a bacteri 55.2 67 0.0015 22.2 7.0 53 206-266 14-66 (69)
343 PF00107 ADH_zinc_N: Zinc-bind 54.7 31 0.00067 26.4 5.1 36 188-228 57-92 (130)
344 TIGR03451 mycoS_dep_FDH mycoth 54.4 43 0.00092 30.9 6.8 82 140-226 175-277 (358)
345 cd08234 threonine_DH_like L-th 53.8 37 0.00079 30.6 6.2 82 140-226 158-258 (334)
346 PRK05225 ketol-acid reductoiso 53.7 28 0.0006 33.9 5.4 79 141-224 35-130 (487)
347 PF03514 GRAS: GRAS domain fam 53.7 40 0.00087 31.8 6.5 38 130-168 100-149 (374)
348 TIGR00006 S-adenosyl-methyltra 53.6 15 0.00033 33.7 3.5 25 204-228 219-243 (305)
349 COG3129 Predicted SAM-dependen 51.8 30 0.00065 30.6 4.8 61 141-201 78-165 (292)
350 TIGR02822 adh_fam_2 zinc-bindi 51.6 58 0.0012 29.7 7.1 80 140-226 164-255 (329)
351 cd00401 AdoHcyase S-adenosyl-L 50.8 34 0.00074 32.8 5.6 89 129-225 189-289 (413)
352 cd08237 ribitol-5-phosphate_DH 50.8 20 0.00043 32.9 3.9 84 141-226 163-257 (341)
353 PF06897 DUF1269: Protein of u 50.1 67 0.0015 24.3 6.0 46 205-258 42-87 (102)
354 PF05206 TRM13: Methyltransfer 49.5 18 0.00038 32.4 3.2 85 140-224 17-139 (259)
355 TIGR00561 pntA NAD(P) transhyd 49.3 43 0.00093 33.1 6.1 84 141-224 163-283 (511)
356 PF07109 Mg-por_mtran_C: Magne 49.2 47 0.001 25.0 5.0 29 237-265 61-89 (97)
357 PRK00050 16S rRNA m(4)C1402 me 48.4 21 0.00045 32.6 3.5 25 204-228 215-239 (296)
358 COG1255 Uncharacterized protei 47.6 1.1E+02 0.0024 24.0 6.8 83 141-228 13-105 (129)
359 TIGR02825 B4_12hDH leukotriene 46.3 1.4E+02 0.0031 26.7 8.8 80 140-225 137-237 (325)
360 COG1565 Uncharacterized conser 45.6 24 0.00053 33.1 3.5 30 141-170 77-119 (370)
361 COG4121 Uncharacterized conser 45.3 70 0.0015 28.5 6.2 70 174-256 149-227 (252)
362 cd08245 CAD Cinnamyl alcohol d 44.5 1.6E+02 0.0034 26.4 8.8 81 140-225 161-256 (330)
363 cd08255 2-desacetyl-2-hydroxye 43.3 81 0.0018 27.4 6.6 82 140-226 96-191 (277)
364 PLN02586 probable cinnamyl alc 43.2 1.1E+02 0.0025 28.2 7.8 79 141-225 183-278 (360)
365 PLN03154 putative allyl alcoho 43.0 51 0.0011 30.3 5.4 80 140-226 157-259 (348)
366 PF02005 TRM: N2,N2-dimethylgu 42.8 33 0.00071 32.4 4.1 80 142-224 50-153 (377)
367 PRK11018 hypothetical protein; 42.4 1.2E+02 0.0026 21.5 9.1 69 191-267 8-76 (78)
368 PF01795 Methyltransf_5: MraW 42.3 16 0.00035 33.5 1.9 25 204-228 220-244 (310)
369 cd08294 leukotriene_B4_DH_like 42.3 2E+02 0.0043 25.6 9.1 80 140-225 142-241 (329)
370 PF04343 DUF488: Protein of un 40.7 83 0.0018 24.3 5.5 50 208-257 2-51 (122)
371 PRK09489 rsmC 16S ribosomal RN 38.6 67 0.0014 29.9 5.4 55 188-250 75-129 (342)
372 cd05285 sorbitol_DH Sorbitol d 38.5 1.6E+02 0.0035 26.6 8.0 34 188-226 233-266 (343)
373 cd05278 FDH_like Formaldehyde 38.5 61 0.0013 29.3 5.1 33 188-225 235-267 (347)
374 COG1724 Predicted RNA binding 38.4 79 0.0017 22.0 4.3 26 235-260 5-30 (66)
375 cd05213 NAD_bind_Glutamyl_tRNA 37.4 1.7E+02 0.0036 26.7 7.8 104 141-247 177-301 (311)
376 PF07101 DUF1363: Protein of u 37.2 12 0.00027 27.9 0.2 12 145-156 6-17 (124)
377 PF11899 DUF3419: Protein of u 36.3 49 0.0011 31.3 4.1 35 140-174 34-71 (380)
378 cd08261 Zn_ADH7 Alcohol dehydr 36.2 1.2E+02 0.0026 27.4 6.7 82 140-226 158-259 (337)
379 KOG2422 Uncharacterized conser 36.0 21 0.00046 35.4 1.6 42 6-47 92-134 (665)
380 TIGR03366 HpnZ_proposed putati 35.4 1.1E+02 0.0023 27.1 6.1 80 141-226 120-219 (280)
381 cd08281 liver_ADH_like1 Zinc-d 34.8 1.7E+02 0.0038 26.9 7.6 82 140-226 190-291 (371)
382 COG2813 RsmC 16S RNA G1207 met 34.3 1.1E+02 0.0023 28.0 5.8 37 189-225 37-73 (300)
383 PHA02119 hypothetical protein 34.1 26 0.00057 24.5 1.4 61 207-267 17-84 (87)
384 TIGR03201 dearomat_had 6-hydro 33.6 61 0.0013 29.7 4.3 22 205-226 252-273 (349)
385 TIGR00497 hsdM type I restrict 33.2 2.3E+02 0.005 27.7 8.5 20 205-224 335-354 (501)
386 PF07927 YcfA: YcfA-like prote 32.8 68 0.0015 20.8 3.3 17 240-256 2-18 (56)
387 PTZ00075 Adenosylhomocysteinas 32.5 2.2E+02 0.0047 27.9 7.9 76 140-225 252-341 (476)
388 PLN00016 RNA-binding protein; 32.3 2.4E+02 0.0053 26.1 8.2 55 143-197 53-138 (378)
389 PF01358 PARP_regulatory: Poly 32.2 1.8E+02 0.0039 26.5 6.8 73 143-231 60-141 (294)
390 cd08295 double_bond_reductase_ 32.2 1.2E+02 0.0026 27.5 6.0 80 140-225 150-251 (338)
391 PRK13243 glyoxylate reductase; 32.0 43 0.00092 31.0 2.9 101 141-248 149-256 (333)
392 PF10017 Methyltransf_33: Hist 31.6 95 0.0021 24.3 4.5 23 237-259 96-118 (127)
393 PRK15469 ghrA bifunctional gly 31.0 78 0.0017 29.0 4.5 102 141-249 135-243 (312)
394 cd08293 PTGR2 Prostaglandin re 31.0 3.5E+02 0.0075 24.3 8.9 77 143-225 156-254 (345)
395 PRK15001 SAM-dependent 23S rib 30.8 1.1E+02 0.0024 29.0 5.5 92 132-227 35-144 (378)
396 KOG1227 Putative methyltransfe 29.7 26 0.00056 32.1 1.1 81 141-225 194-297 (351)
397 cd08239 THR_DH_like L-threonin 29.3 1.8E+02 0.0038 26.3 6.6 80 141-226 163-263 (339)
398 PLN02827 Alcohol dehydrogenase 29.0 1.3E+02 0.0028 28.0 5.7 81 140-226 192-296 (378)
399 PF02826 2-Hacid_dh_C: D-isome 29.0 20 0.00044 29.7 0.2 98 141-250 35-145 (178)
400 PRK06487 glycerate dehydrogena 28.8 59 0.0013 29.8 3.3 98 141-248 147-249 (317)
401 PLN02740 Alcohol dehydrogenase 28.7 2E+02 0.0044 26.6 7.0 82 140-226 197-301 (381)
402 cd03421 SirA_like_N SirA_like_ 28.1 1.9E+02 0.0042 19.4 7.4 44 214-266 21-64 (67)
403 PRK08410 2-hydroxyacid dehydro 28.0 62 0.0013 29.6 3.3 99 141-249 144-249 (311)
404 PRK12480 D-lactate dehydrogena 27.8 85 0.0018 29.0 4.2 101 141-249 145-251 (330)
405 PF04072 LCM: Leucine carboxyl 27.5 2.6E+02 0.0056 23.1 6.8 75 132-207 69-175 (183)
406 KOG2811 Uncharacterized conser 27.1 79 0.0017 29.8 3.7 20 141-160 182-201 (420)
407 TIGR00518 alaDH alanine dehydr 27.0 57 0.0012 30.7 2.9 84 141-224 166-266 (370)
408 PRK10309 galactitol-1-phosphat 27.0 2.1E+02 0.0046 25.9 6.7 22 205-226 240-261 (347)
409 PHA03108 poly(A) polymerase sm 26.9 3E+02 0.0066 25.0 7.2 75 141-230 60-143 (300)
410 cd08236 sugar_DH NAD(P)-depend 26.9 3.9E+02 0.0084 24.0 8.4 81 140-225 158-258 (343)
411 cd08263 Zn_ADH10 Alcohol dehyd 26.8 2.7E+02 0.0058 25.5 7.4 34 187-225 254-287 (367)
412 PRK06242 flavodoxin; Provision 26.6 2.3E+02 0.005 22.2 6.1 62 188-255 42-107 (150)
413 KOG1202 Animal-type fatty acid 26.5 1.7E+02 0.0038 32.3 6.3 52 172-230 1209-1265(2376)
414 COG0373 HemA Glutamyl-tRNA red 26.5 3.5E+02 0.0075 26.0 8.0 61 141-201 177-250 (414)
415 PF10006 DUF2249: Uncharacteri 26.0 2.2E+02 0.0048 19.4 8.1 57 200-266 8-66 (69)
416 COG3315 O-Methyltransferase in 25.0 5.3E+02 0.011 23.5 11.4 114 143-256 94-262 (297)
417 PRK08306 dipicolinate synthase 24.8 2.3E+02 0.0049 25.7 6.3 78 141-223 151-239 (296)
418 cd08285 NADP_ADH NADP(H)-depen 24.7 4.5E+02 0.0097 23.8 8.5 34 188-226 234-267 (351)
419 PF14258 DUF4350: Domain of un 24.1 1.5E+02 0.0032 20.2 4.0 20 205-224 50-69 (70)
420 PRK06249 2-dehydropantoate 2-r 24.0 4.2E+02 0.009 23.9 8.0 35 188-224 71-105 (313)
421 TIGR00936 ahcY adenosylhomocys 23.7 3.6E+02 0.0077 25.8 7.6 95 140-248 193-299 (406)
422 cd08278 benzyl_alcohol_DH Benz 23.7 2.1E+02 0.0045 26.3 6.0 81 140-225 185-285 (365)
423 COG1867 TRM1 N2,N2-dimethylgua 23.5 1.6E+02 0.0035 27.8 5.0 80 142-224 53-153 (380)
424 COG0604 Qor NADPH:quinone redu 23.5 2.8E+02 0.0062 25.4 6.8 84 139-228 140-244 (326)
425 PF08468 MTS_N: Methyltransfer 23.4 76 0.0016 26.0 2.6 106 141-257 12-128 (155)
426 PLN02928 oxidoreductase family 22.8 83 0.0018 29.3 3.1 101 141-248 158-278 (347)
427 PLN02494 adenosylhomocysteinas 22.7 2E+02 0.0044 28.2 5.8 90 129-225 241-341 (477)
428 cd08241 QOR1 Quinone oxidoredu 22.4 4E+02 0.0086 23.1 7.5 80 140-225 138-238 (323)
429 COG1743 Adenine-specific DNA m 22.3 2E+02 0.0042 30.1 5.7 45 205-255 568-613 (875)
430 TIGR00692 tdh L-threonine 3-de 22.3 2.6E+02 0.0056 25.2 6.3 34 188-226 229-262 (340)
431 PRK06701 short chain dehydroge 22.2 5.2E+02 0.011 22.8 8.2 85 141-225 45-181 (290)
432 PLN00203 glutamyl-tRNA reducta 22.2 4.3E+02 0.0093 26.2 8.0 86 142-227 266-369 (519)
433 PRK05396 tdh L-threonine 3-deh 22.2 2.6E+02 0.0056 25.2 6.3 35 188-227 231-265 (341)
434 PF03721 UDPG_MGDP_dh_N: UDP-g 22.1 1.4E+02 0.003 25.1 4.1 42 204-251 99-140 (185)
435 PF01963 TraB: TraB family; I 22.0 1.6E+02 0.0034 25.5 4.7 43 206-255 215-258 (259)
436 COG1052 LdhA Lactate dehydroge 22.0 59 0.0013 30.0 2.0 96 141-248 145-252 (324)
437 PRK08324 short chain dehydroge 21.8 3.8E+02 0.0082 27.4 7.9 85 141-225 421-557 (681)
438 PF01548 DEDD_Tnp_IS110: Trans 21.8 1.3E+02 0.0028 23.5 3.7 77 163-258 1-78 (144)
439 COG4803 Predicted membrane pro 21.7 2.7E+02 0.0058 22.8 5.3 46 205-258 103-148 (170)
440 PF08351 DUF1726: Domain of un 21.6 1.4E+02 0.0031 22.0 3.6 36 188-225 10-45 (92)
441 COG3735 Uncharacterized protei 21.6 1.5E+02 0.0032 27.1 4.3 47 203-256 251-298 (299)
442 COG3603 Uncharacterized conser 21.5 3.1E+02 0.0068 21.5 5.5 76 177-254 47-127 (128)
443 PRK07502 cyclohexadienyl dehyd 21.3 1.4E+02 0.0031 26.9 4.3 76 143-223 7-98 (307)
444 PF07090 DUF1355: Protein of u 21.1 65 0.0014 27.0 1.8 38 188-225 66-108 (177)
445 COG3414 SgaB Phosphotransferas 20.5 59 0.0013 24.2 1.3 45 148-197 6-57 (93)
446 PLN02178 cinnamyl-alcohol dehy 20.4 2.2E+02 0.0048 26.5 5.5 80 141-226 178-274 (375)
447 PRK05786 fabG 3-ketoacyl-(acyl 20.3 4.4E+02 0.0096 22.0 7.1 85 141-225 4-135 (238)
448 cd05281 TDH Threonine dehydrog 20.1 5.2E+02 0.011 23.2 7.9 33 188-225 230-262 (341)
No 1
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=100.00 E-value=2.5e-46 Score=320.58 Aligned_cols=284 Identities=45% Similarity=0.800 Sum_probs=232.9
Q ss_pred CcchhhHHHhhhcccCCCCCCchhhhhhhhhhh---------hhhhccccc--cccccccccccccccccccCCCCCCch
Q 022592 2 KEGESRKRKRRRRHNSNSKPQDQESYQSKSTAK---------TTAKKHKQD--TVKNNEQQYEHHQTSAAASAKRPKPSS 70 (294)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (294)
++++++|.|+|+++++|.+.+......+..... +.+...|.+ ..+.+ .+.|...-...........++
T Consensus 31 k~~~~kKkkKRkk~~rkl~~~k~A~~~e~v~~~p~g~~ak~~~~~n~~kk~r~~~kkk-k~~p~~~a~~~~~t~~~~~~~ 109 (325)
T KOG3045|consen 31 KTKEEKKKKKRKKGERKLKAKKAAELKENVEEPPLGSEAKSSPKENSKKKRRNETKKK-KEKPPEKAGAAAETEKTEATD 109 (325)
T ss_pred ccchhhhhhhhhhHHHhhhhhhhhhhhcCccCCCCcccCCCCCcccchhhccCccccc-ccCChhhhccccchhhhcccC
Confidence 467888999999998888877765554433221 111111111 11111 112211111111112235788
Q ss_pred HHHHHHccccccccceeccccccCCcHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcC
Q 022592 71 FLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGC 150 (294)
Q Consensus 71 ~~~~m~~~l~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGc 150 (294)
++..|..+|.|++||++|+++|++.+..++++|.+++..|+.||.+|..+...||.+|++.+++.|...+....|.|+||
T Consensus 110 l~~km~~rL~ggrFR~lNEqLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GC 189 (325)
T KOG3045|consen 110 LQAKMKKRLDGGRFRYLNEQLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGC 189 (325)
T ss_pred HHHHHHHhhcccceehhhhhhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877779999999
Q ss_pred cccHHHHHhccceEEEeccCCCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCC
Q 022592 151 GDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRF 230 (294)
Q Consensus 151 G~G~~~~~l~~~v~gvD~s~~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~ 230 (294)
|.+.++......|+.+|+...+-+++.||+.++|++++++|++|+|.+|+.+|+..++.|++|+|+|||.++|+|+.++|
T Consensus 190 GEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf 269 (325)
T KOG3045|consen 190 GEAKIASSERHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRF 269 (325)
T ss_pred chhhhhhccccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhc
Confidence 99999987778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEECCccccccccCCCCcccccccccC
Q 022592 231 DPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294 (294)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 294 (294)
. +...|...|...||.+.+.+..+.+|++++|.|... .+.+.-.-..|+||+||||
T Consensus 270 ~------dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~~--~k~~k~~~~~l~pclyKkR 325 (325)
T KOG3045|consen 270 S------DVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTPK--PKAPKPRILKLKPCLYKKR 325 (325)
T ss_pred c------cHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCCc--ccccccchhhccchhhccC
Confidence 6 567899999999999999999999999999999874 2222111235899999998
No 2
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=100.00 E-value=8.3e-46 Score=311.53 Aligned_cols=216 Identities=59% Similarity=1.014 Sum_probs=164.3
Q ss_pred HHHHHHccccccccceeccccccCCcHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcC
Q 022592 71 FLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGC 150 (294)
Q Consensus 71 ~~~~m~~~l~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGc 150 (294)
+++.|+.+|.|++||++|+++|++.++++.++|.++++.|+.||+||+.+...||.+|++.++++|...++...|.|+||
T Consensus 2 L~~~m~~kL~gsrFR~lNE~LYT~~s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GC 81 (219)
T PF05148_consen 2 LQEKMREKLSGSRFRWLNEQLYTTSSEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGC 81 (219)
T ss_dssp ------HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-
T ss_pred hHHHHHHHcccCchHHHHHhHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999998866779999999
Q ss_pred cccHHHHHhcc--ceEEEeccCCCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 151 GDARLAKSVKN--KVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 151 G~G~~~~~l~~--~v~gvD~s~~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
|.+.++..+.. .|+.+|+...+..++.||+.++|++++++|++|+|.+|+.+|+..++.|+.|+|||||.|+|+|+.+
T Consensus 82 GdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 82 GDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred chHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc
Confidence 99999998874 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEECCccccccccCCCCcccccccccC
Q 022592 229 RFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEKQNSKSKEIQWPELKPCLYKRR 294 (294)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 294 (294)
+|. +.+.+.+.++..||++...+.++.+|+++.|+|.+....+ ... |..|+||+||||
T Consensus 162 Rf~------~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~~~~~-~~~-~~~LkPClYKkR 219 (219)
T PF05148_consen 162 RFE------NVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRKKEPK-KKP-GLKLKPCLYKKR 219 (219)
T ss_dssp G-S-------HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SSS-TT-----GG----------
T ss_pred cCc------CHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCccccc-ccC-CcccccCCccCC
Confidence 997 6799999999999999999999999999999998855442 333 889999999998
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.86 E-value=1.3e-20 Score=164.56 Aligned_cols=155 Identities=21% Similarity=0.351 Sum_probs=118.1
Q ss_pred HHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-
Q 022592 97 KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS- 170 (294)
Q Consensus 97 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~- 170 (294)
+.....|+..+..||....-++- +.....-+.++..+... ++.+|||||||||.++..++ .+|+|+|+|+
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~---g~~~~Wr~~~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ 86 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSF---GLHRLWRRALISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISES 86 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccC---cchHHHHHHHHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHH
Confidence 45556777777777775532211 11111123345555444 78899999999999999887 3899999998
Q ss_pred --------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCC-
Q 022592 171 --------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT- 234 (294)
Q Consensus 171 --------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~- 234 (294)
.+++|+.+|++++||++++||+|+++++|+++ +++.+|+|++|+|||||.+++.|+.....+..
T Consensus 87 ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~ 166 (238)
T COG2226 87 MLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR 166 (238)
T ss_pred HHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH
Confidence 23789999999999999999999999999994 99999999999999999999998654211100
Q ss_pred -------------------C---------------CCCHHHHHHHHHHCCCeEEE
Q 022592 235 -------------------G---------------GADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 235 -------------------~---------------~~~~~~~~~~l~~~Gf~~~~ 255 (294)
. ..+.+++..+++++||..+.
T Consensus 167 ~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 167 KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 0 05788999999999999877
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.83 E-value=1.2e-20 Score=165.60 Aligned_cols=153 Identities=22% Similarity=0.348 Sum_probs=73.3
Q ss_pred HHHHHHhcChhhHHHHHHhHHhh-hccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC
Q 022592 98 EALDYFNENPALFDMYHSGYQEQ-MSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS 170 (294)
Q Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~ 170 (294)
.....|+..+..||....-..-. ...|.. .+++.+... ++.+|||+|||||.++..++ ..|+|+|+|+
T Consensus 8 ~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~----~~~~~~~~~-~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~ 82 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDRMNDLLSFGQDRRWRR----KLIKLLGLR-PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP 82 (233)
T ss_dssp -----------------------------S----HHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H
T ss_pred HHHHHHHHHHHHhCCCccccCCcHHHHHHH----HHHhccCCC-CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH
Confidence 34467777777777755432211 123333 344444333 67799999999999988775 3789999998
Q ss_pred ---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCC-----
Q 022592 171 ---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSR----- 229 (294)
Q Consensus 171 ---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~----- 229 (294)
.+++++++|++++|+++++||+|+++++|++ .|+..+++|++|+|||||.++|.|+...
T Consensus 83 ~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~ 162 (233)
T PF01209_consen 83 GMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLL 162 (233)
T ss_dssp HHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHH
T ss_pred HHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchh
Confidence 3788999999999999999999999999998 5999999999999999999999985531
Q ss_pred ----------CCCCC-------------------CCCCHHHHHHHHHHCCCeEEE
Q 022592 230 ----------FDPNT-------------------GGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 230 ----------~~~~~-------------------~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
+.|.. ...+.+++.++|+++||+.+.
T Consensus 163 ~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~ 217 (233)
T PF01209_consen 163 RALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVE 217 (233)
T ss_dssp HHHHHH-------------------------------------------------
T ss_pred hceeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01100 014778999999999998766
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.81 E-value=1.2e-18 Score=155.89 Aligned_cols=166 Identities=20% Similarity=0.266 Sum_probs=118.4
Q ss_pred HHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHH-HHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC
Q 022592 98 EALDYFNENPALFDMYHSGYQEQMSHWPELPVNII-VKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS 170 (294)
Q Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~ 170 (294)
...+.|+..+..||.....+... ....+..+ +..+. ..++.+|||||||+|.++..++ ..|+|+|+|+
T Consensus 34 ~v~~~f~~~A~~YD~~~~~~s~g----~~~~~r~~~~~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~ 108 (261)
T PLN02233 34 ERQALFNRIAPVYDNLNDLLSLG----QHRIWKRMAVSWSG-AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS 108 (261)
T ss_pred HHHHHHHHhhhHHHHhhhhhcCC----hhHHHHHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 34467777777777643211000 01122322 33333 3367799999999999887765 2799999997
Q ss_pred C------------------CCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCC
Q 022592 171 N------------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFD 231 (294)
Q Consensus 171 ~------------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~ 231 (294)
. ++.++++|+.++|+++++||+|+++++++|. ++..+++++.|+|||||.+++.++.....
T Consensus 109 ~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 109 EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred HHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 1 4678999999999999999999999999985 89999999999999999999998654211
Q ss_pred C----------------------C-----------CCCCCHHHHHHHHHHCCCeEEEEe-ccCCeEEEEEE
Q 022592 232 P----------------------N-----------TGGADPNKFSKAVCDLGFAPVSKD-FSNKMFIMFYF 268 (294)
Q Consensus 232 ~----------------------~-----------~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~f~~i~~ 268 (294)
+ . ...++.+++.++|+++||+++... ......++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 189 PFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 0 0 112588999999999999987743 34444444444
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.75 E-value=4e-17 Score=151.32 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=98.2
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~ 200 (294)
++.+|||||||+|.++..++ ..|+|+|+|+ .++.++++|+.++|+++++||+|++..+++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 56799999999999988776 3899999997 257899999999999999999999999999
Q ss_pred CC-CHHHHHHHHHHhcCcCcEEEEEeecCCCC-CC--------------------C-CCCCHHHHHHHHHHCCCeEEEEe
Q 022592 201 GI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFD-PN--------------------T-GGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 201 ~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~-~~--------------------~-~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
|. +...+++++.|+|+|||.|+++++..... +. . ...+.+++..+++++||.++...
T Consensus 198 h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 198 HMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 95 89999999999999999999987543211 10 0 01378899999999999998855
Q ss_pred cc
Q 022592 258 FS 259 (294)
Q Consensus 258 ~~ 259 (294)
..
T Consensus 278 d~ 279 (340)
T PLN02244 278 DW 279 (340)
T ss_pred eC
Confidence 43
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=1.4e-16 Score=139.66 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=119.4
Q ss_pred HHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC-
Q 022592 98 EALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS- 170 (294)
Q Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~- 170 (294)
....+|+..+..||.....+. ..........++..+... ++.+|||+|||+|.++..++ ..|+|+|+++
T Consensus 6 ~~~~~f~~~a~~yd~~~~~~~---~~~~~~~~~~~l~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~ 81 (231)
T TIGR02752 6 RVHKVFEKIYKKYDRMNSVIS---FQRHKKWRKDTMKRMNVQ-AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN 81 (231)
T ss_pred HHHHHHHHhhhHHhHHHHHhc---CCchHHHHHHHHHhcCCC-CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH
Confidence 344567666777776432210 001111123455555433 56799999999999887765 3789999986
Q ss_pred --------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCC----
Q 022592 171 --------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFD---- 231 (294)
Q Consensus 171 --------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~---- 231 (294)
.++.++.+|+..+++++++||+|++..++++ .++..++.++.++|+|||.+++.+......
T Consensus 82 ~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 161 (231)
T TIGR02752 82 MLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFK 161 (231)
T ss_pred HHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHH
Confidence 2567889999998888899999999999988 488999999999999999999876432110
Q ss_pred -----------CC-------------------CCCCCHHHHHHHHHHCCCeEEEEe-ccCCeEEEEEEEE
Q 022592 232 -----------PN-------------------TGGADPNKFSKAVCDLGFAPVSKD-FSNKMFIMFYFKK 270 (294)
Q Consensus 232 -----------~~-------------------~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~f~~i~~~k 270 (294)
+. ...++.+++..+|+++||.++++. ......++++.+|
T Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 162 QLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 00 011467889999999999988744 3446666666654
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.73 E-value=5.2e-17 Score=140.27 Aligned_cols=163 Identities=20% Similarity=0.279 Sum_probs=119.4
Q ss_pred HHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----------cceEEEe
Q 022592 99 ALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----------NKVFSFD 167 (294)
Q Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----------~~v~gvD 167 (294)
....|...+..||.....+.- +-.+-.-+.++..+... .++++||++||||..+..+. .+|+++|
T Consensus 62 V~~vF~~vA~~YD~mND~mSl---GiHRlWKd~~v~~L~p~-~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~D 137 (296)
T KOG1540|consen 62 VHHVFESVAKKYDIMNDAMSL---GIHRLWKDMFVSKLGPG-KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLD 137 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---chhHHHHHHhhhccCCC-CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEe
Confidence 345666666667665543321 11111124455666554 66899999999999887764 3799999
Q ss_pred ccC------------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 168 LVS------------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 168 ~s~------------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
+++ ..+.|+++|++.+||++++||+.++.+.|.. ++++++|+|++|+|||||++.+.++..
T Consensus 138 inp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 138 INPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred CCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 998 2378999999999999999999999999997 699999999999999999999998654
Q ss_pred CCCC---------------C-------------------CCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592 229 RFDP---------------N-------------------TGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMF 266 (294)
Q Consensus 229 ~~~~---------------~-------------------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i 266 (294)
...+ . ....+.+++..+++++||..+. .+.+..|.++
T Consensus 218 v~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~-~ye~lt~Gv~ 288 (296)
T KOG1540|consen 218 VENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN-GYENLTFGVV 288 (296)
T ss_pred cccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc-ccccceeeee
Confidence 2210 0 0114778999999999998886 3444455433
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.72 E-value=6.5e-17 Score=148.15 Aligned_cols=116 Identities=14% Similarity=0.222 Sum_probs=97.7
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
++.+|||||||+|.++..++ ..|+|+|+++ .++.++++|++++++++++||+|++..+|+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 45689999999999988887 3899999996 1567889999888888889999999999999
Q ss_pred C-CHHHHHHHHHHhcCcCcEEEEEeecCCC----------------CCC-----CCCCCHHHHHHHHHHCCCeEEEE
Q 022592 202 I-NFPNYLQEAQRVLKPSGWLLIAEVKSRF----------------DPN-----TGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 202 ~-~~~~~l~el~r~LkpgG~l~i~e~~~~~----------------~~~-----~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
. ++..++.++.++|||||.+++..++... .+. ...++++++..+|+++||+++++
T Consensus 211 v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 211 VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 5 9999999999999999999998755421 111 12368999999999999999874
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.70 E-value=1.2e-16 Score=142.99 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=104.1
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC-------------CCCcEEEccCCCCCCCCCCcc
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD 191 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD 191 (294)
...++..+... ++.+|||||||+|..+..++ ..|+|+|+|+ .++.+..+|+...|+++++||
T Consensus 41 ~~~~l~~l~l~-~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 41 TTKILSDIELN-ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHHhCCCC-CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 45566666444 67799999999999887775 3899999997 257788999999899899999
Q ss_pred EEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-------------CCCCCCHHHHHHHHHHCCCeEEE
Q 022592 192 VAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-------------NTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 192 ~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-------------~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
+|++..+++|. ++..++++++++|+|||.|++.++...... .....+.+++..+|+++||.++.
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 199 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVV 199 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeee
Confidence 99999888884 678999999999999999999876432110 11225889999999999999988
Q ss_pred EeccC
Q 022592 256 KDFSN 260 (294)
Q Consensus 256 ~~~~~ 260 (294)
.....
T Consensus 200 ~~d~~ 204 (263)
T PTZ00098 200 AKDIS 204 (263)
T ss_pred EEeCc
Confidence 55433
No 11
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=3.1e-16 Score=144.19 Aligned_cols=128 Identities=15% Similarity=0.132 Sum_probs=100.6
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS 189 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~ 189 (294)
..++..+... .+.+|||||||+|.++..++ ..|+|+|+|+ .++.++.+|++++|+ +++
T Consensus 112 ~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~ 189 (322)
T PRK15068 112 DRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA 189 (322)
T ss_pred HHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence 4455666544 56799999999999988776 3699999987 146788999999998 788
Q ss_pred ccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC------CCCC---------CCCCHHHHHHHHHHCCCeE
Q 022592 190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF------DPNT---------GGADPNKFSKAVCDLGFAP 253 (294)
Q Consensus 190 fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~------~~~~---------~~~~~~~~~~~l~~~Gf~~ 253 (294)
||+|++..+++|. ++..++.+++++|+|||.+++..+.... .+.. ...+..++..+|+++||++
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~ 269 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKD 269 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCce
Confidence 9999999999994 8999999999999999999986532110 0100 0137889999999999999
Q ss_pred EEEecc
Q 022592 254 VSKDFS 259 (294)
Q Consensus 254 ~~~~~~ 259 (294)
+.+...
T Consensus 270 i~~~~~ 275 (322)
T PRK15068 270 VRIVDV 275 (322)
T ss_pred EEEEeC
Confidence 886543
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.69 E-value=4.7e-16 Score=138.58 Aligned_cols=125 Identities=21% Similarity=0.260 Sum_probs=97.7
Q ss_pred HHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCC-CCCCCc
Q 022592 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTP-LNSSSV 190 (294)
Q Consensus 131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp-~~~~~f 190 (294)
.+++.+. ..+.+|||||||+|.++..++ ..|+|+|+|+ .++.++++|+.+++ +.+++|
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 3444444 245699999999999998887 4899999997 24678888887764 567899
Q ss_pred cEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC-------------------------CCCCCCCCHHHHHH
Q 022592 191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF-------------------------DPNTGGADPNKFSK 244 (294)
Q Consensus 191 D~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~-------------------------~~~~~~~~~~~~~~ 244 (294)
|+|++..+++|. ++..++.++.++|+|||.+++..++... ......++++++..
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 193 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQ 193 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHH
Confidence 999999999995 8999999999999999999987543210 00112368899999
Q ss_pred HHHHCCCeEEEEe
Q 022592 245 AVCDLGFAPVSKD 257 (294)
Q Consensus 245 ~l~~~Gf~~~~~~ 257 (294)
+|+++||+++...
T Consensus 194 ~l~~aGf~~~~~~ 206 (255)
T PRK11036 194 WLEEAGWQIMGKT 206 (255)
T ss_pred HHHHCCCeEeeee
Confidence 9999999998744
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.68 E-value=2e-16 Score=130.08 Aligned_cols=124 Identities=21% Similarity=0.393 Sum_probs=97.7
Q ss_pred HHHHhhc-cCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC-----CCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592 132 IVKWLKD-HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN-----DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI 202 (294)
Q Consensus 132 ~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~-----~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~ 202 (294)
++..+.. ..++.+|||||||+|.++..++ .+++|+|+++. .......+....+.++++||+|+++.+|+|.
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 3443432 3467899999999999999887 38999999984 3444444455566678899999999999996
Q ss_pred -CHHHHHHHHHHhcCcCcEEEEEeecCC---------C-C-----CCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 203 -NFPNYLQEAQRVLKPSGWLLIAEVKSR---------F-D-----PNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 203 -~~~~~l~el~r~LkpgG~l~i~e~~~~---------~-~-----~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
++..+++++.++|+|||++++.+.... + . .....++.+++..+++++||++++
T Consensus 92 ~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 92 PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 899999999999999999999986532 1 1 112337999999999999999985
No 14
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.68 E-value=1e-15 Score=135.97 Aligned_cols=146 Identities=18% Similarity=0.268 Sum_probs=108.0
Q ss_pred HHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC----
Q 022592 99 ALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---- 171 (294)
Q Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---- 171 (294)
....|+..+..|+.+.... ......+++.+... +..+|||+|||+|.++..++ ..|+|+|+|+.
T Consensus 9 i~~~F~~aa~~Y~~~~~~q--------~~~a~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~ 79 (251)
T PRK10258 9 IAAAFGRAAAHYEQHAELQ--------RQSADALLAMLPQR-KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQ 79 (251)
T ss_pred HHHHHHHHHHhHhHHHHHH--------HHHHHHHHHhcCcc-CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHH
Confidence 3345555556665532211 11224455666543 45689999999999988776 48999999982
Q ss_pred ------CCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCC--------------
Q 022592 172 ------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRF-------------- 230 (294)
Q Consensus 172 ------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~-------------- 230 (294)
...++++|++.+|+++++||+|+++.+++|. ++..++.++.++|+|||.++++.+....
T Consensus 80 a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~ 159 (251)
T PRK10258 80 ARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDER 159 (251)
T ss_pred HHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccC
Confidence 3468899999999999999999999999984 8999999999999999999998654321
Q ss_pred CCCCCCCCHHHHHHHHHHCCCeE
Q 022592 231 DPNTGGADPNKFSKAVCDLGFAP 253 (294)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~Gf~~ 253 (294)
......++.+++..++...|+..
T Consensus 160 ~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 160 PHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred CccccCCCHHHHHHHHHhCCcee
Confidence 11223468899999999888754
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=1.6e-15 Score=135.21 Aligned_cols=125 Identities=14% Similarity=0.235 Sum_probs=98.1
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEE
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVF 195 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~ 195 (294)
...+++.+... ++.+|||||||+|.++..++ ..|+|+|+|+ .++.++.+|+..++ ++++||+|++
T Consensus 18 ~~~ll~~l~~~-~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~ 95 (255)
T PRK14103 18 FYDLLARVGAE-RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVVVS 95 (255)
T ss_pred HHHHHHhCCCC-CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEE
Confidence 34566666544 56799999999999998886 3799999998 46789999998775 5678999999
Q ss_pred cccccCC-CHHHHHHHHHHhcCcCcEEEEEeecC----------------CCCC---------CCCCCCHHHHHHHHHHC
Q 022592 196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKS----------------RFDP---------NTGGADPNKFSKAVCDL 249 (294)
Q Consensus 196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~----------------~~~~---------~~~~~~~~~~~~~l~~~ 249 (294)
+.++||. ++..++.+++++|+|||.+++..... .+.. .....+.+.+..+|+++
T Consensus 96 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~a 175 (255)
T PRK14103 96 NAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDA 175 (255)
T ss_pred ehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhC
Confidence 9999995 88999999999999999999863211 0110 01124789999999999
Q ss_pred CCeEEE
Q 022592 250 GFAPVS 255 (294)
Q Consensus 250 Gf~~~~ 255 (294)
||.+..
T Consensus 176 Gf~v~~ 181 (255)
T PRK14103 176 GCKVDA 181 (255)
T ss_pred CCeEEE
Confidence 998654
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.67 E-value=1.1e-15 Score=139.48 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=96.9
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS 189 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~ 189 (294)
..++..+... ++.+|||||||+|.++..++ ..|+|+|+|+ .++.+..++++++|.. .+
T Consensus 111 ~~~l~~l~~~-~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~ 188 (314)
T TIGR00452 111 DRVLPHLSPL-KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YA 188 (314)
T ss_pred HHHHHhcCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CC
Confidence 3455555444 56799999999999877665 3699999987 1345677888888764 47
Q ss_pred ccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecC--CCC----CC---------CCCCCHHHHHHHHHHCCCeE
Q 022592 190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKS--RFD----PN---------TGGADPNKFSKAVCDLGFAP 253 (294)
Q Consensus 190 fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~--~~~----~~---------~~~~~~~~~~~~l~~~Gf~~ 253 (294)
||+|++..+|+|. ++..++.+++++|+|||.|++.++.- ... +. ...++..++..+|+++||+.
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 9999999999995 89999999999999999999865321 110 00 01248899999999999999
Q ss_pred EEEec
Q 022592 254 VSKDF 258 (294)
Q Consensus 254 ~~~~~ 258 (294)
+++..
T Consensus 269 V~i~~ 273 (314)
T TIGR00452 269 FRILD 273 (314)
T ss_pred EEEEe
Confidence 88544
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.65 E-value=1.3e-14 Score=127.12 Aligned_cols=169 Identities=21% Similarity=0.349 Sum_probs=119.8
Q ss_pred HHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC-
Q 022592 98 EALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS- 170 (294)
Q Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~- 170 (294)
....+|+..+..|+.++... ...........++..+... ++.+|||+|||+|.++..++ ..++++|+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 87 (239)
T PRK00216 12 KVAEMFDSIAPKYDLMNDLL---SFGLHRVWRRKTIKWLGVR-PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG 87 (239)
T ss_pred HHHHHHHHhhhhHHHHHHHH---hcCCcHHHHHHHHHHhCCC-CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence 34456666666665433211 0111222234455555444 56799999999999887664 4789999986
Q ss_pred ---------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCC--
Q 022592 171 ---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-- 232 (294)
Q Consensus 171 ---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-- 232 (294)
.++.+..+|+...+++.++||+|++..++++. ++..++..+.++|+|||.+++.++......
T Consensus 88 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~ 167 (239)
T PRK00216 88 MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPL 167 (239)
T ss_pred HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHH
Confidence 24678889998888777899999999999884 889999999999999999999875432110
Q ss_pred --------------------C------------CCCCCHHHHHHHHHHCCCeEEEEec-cCCeEEEEEEEE
Q 022592 233 --------------------N------------TGGADPNKFSKAVCDLGFAPVSKDF-SNKMFIMFYFKK 270 (294)
Q Consensus 233 --------------------~------------~~~~~~~~~~~~l~~~Gf~~~~~~~-~~~~f~~i~~~k 270 (294)
. ...++.+++..+|+++||.++.... ....+.++.++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 168 KKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 0 1124678899999999999988554 556677777765
No 18
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.65 E-value=1.4e-15 Score=140.06 Aligned_cols=129 Identities=18% Similarity=0.116 Sum_probs=99.8
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------CCCcEEEccCCCCCCCCCCccEEE
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAV 194 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~Vi 194 (294)
+++.+....++.+|||||||+|.++..++ ..|+++|+|+ .++.++.+|++++++++++||+|+
T Consensus 104 ~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVI 183 (340)
T PLN02490 104 ALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYV 183 (340)
T ss_pred HHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEE
Confidence 44443332356799999999999877664 3799999986 367889999999999889999999
Q ss_pred EcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecC-CC-----CC--CCCCCCHHHHHHHHHHCCCeEEEEeccC
Q 022592 195 FCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKS-RF-----DP--NTGGADPNKFSKAVCDLGFAPVSKDFSN 260 (294)
Q Consensus 195 ~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~-~~-----~~--~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 260 (294)
++.++++ .++..+++++.++|+|||.+++.+... .+ .. .....+.+++.++|+++||+.+......
T Consensus 184 s~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred EcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 9999998 488999999999999999998875321 10 00 0112478999999999999988855433
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.64 E-value=1.4e-15 Score=147.05 Aligned_cols=129 Identities=21% Similarity=0.236 Sum_probs=102.7
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCc
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSV 190 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~f 190 (294)
.+.+++.+.. .++.+|||||||+|.++..++ ..|+|+|+|+ .++.+..+|+...++++++|
T Consensus 255 te~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 255 TKEFVDKLDL-KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHHhcCC-CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 3445665543 356799999999998877665 3799999996 25678899999988888899
Q ss_pred cEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCC------------CCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP------------NTGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 191 D~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
|+|++..+++|. ++..++.+++++|+|||.+++.++...... .....+..++.++++++||.++...
T Consensus 334 D~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 334 DVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred EEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 999999999995 899999999999999999999875432110 1122578899999999999998754
Q ss_pred c
Q 022592 258 F 258 (294)
Q Consensus 258 ~ 258 (294)
.
T Consensus 414 d 414 (475)
T PLN02336 414 D 414 (475)
T ss_pred c
Confidence 3
No 20
>PRK05785 hypothetical protein; Provisional
Probab=99.63 E-value=4.1e-15 Score=130.25 Aligned_cols=169 Identities=14% Similarity=0.104 Sum_probs=110.6
Q ss_pred HHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc----cceEEEeccCC
Q 022592 97 KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN 171 (294)
Q Consensus 97 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~ 171 (294)
+...+.|+..+..||....... ..-.......++..+... .++.+|||||||+|.++..++ ..|+|+|+|+.
T Consensus 9 ~~v~~~f~~iA~~YD~~n~~~s---~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~ 85 (226)
T PRK05785 9 EELQEAYNKIPKAYDRANRFIS---FNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAEN 85 (226)
T ss_pred HHHHHHHHhhhHHHHHhhhhcc---CCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHH
Confidence 3445677777777776442211 000111112234444321 245799999999999988776 37899999983
Q ss_pred -------CCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC--------------
Q 022592 172 -------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR-------------- 229 (294)
Q Consensus 172 -------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~-------------- 229 (294)
...++++|++.+|+++++||+|+++++++|. ++..+++++.|+|||.+ .+.++...
T Consensus 86 Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~--~ile~~~p~~~~~~~~~~~y~~ 163 (226)
T PRK05785 86 MLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV--GFIAMGKPDNVIKRKYLSFYLR 163 (226)
T ss_pred HHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce--EEEEeCCCCcHHHHHHHHHHHH
Confidence 3457889999999999999999999999984 99999999999999942 23332210
Q ss_pred ---------CCCCCC-----------CCCHHHHHHHHHHCCCe-EEEEeccCCeEEEEEEEEC
Q 022592 230 ---------FDPNTG-----------GADPNKFSKAVCDLGFA-PVSKDFSNKMFIMFYFKKK 271 (294)
Q Consensus 230 ---------~~~~~~-----------~~~~~~~~~~l~~~Gf~-~~~~~~~~~~f~~i~~~k~ 271 (294)
+..... ..+.+++.++++++| . +.........-.+++.+|.
T Consensus 164 ~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 164 YIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSSR 225 (226)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEeeC
Confidence 000000 047789999999964 3 3334455555666666653
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.63 E-value=4.7e-16 Score=116.30 Aligned_cols=78 Identities=32% Similarity=0.472 Sum_probs=67.6
Q ss_pred EEEcCcccHHHHHhcc----ceEEEeccC------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CHHHHH
Q 022592 146 ADFGCGDARLAKSVKN----KVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYL 208 (294)
Q Consensus 146 LDiGcG~G~~~~~l~~----~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~~~~l 208 (294)
||+|||+|..+..++. .++++|+++ ..+.+..+|+..+|+++++||+|++..+++|. ++..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 8999999999998874 699999998 24459999999999999999999999999996 899999
Q ss_pred HHHHHhcCcCcEEEE
Q 022592 209 QEAQRVLKPSGWLLI 223 (294)
Q Consensus 209 ~el~r~LkpgG~l~i 223 (294)
+++.|+|||||+++|
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999986
No 22
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=6.4e-16 Score=137.17 Aligned_cols=130 Identities=21% Similarity=0.233 Sum_probs=102.4
Q ss_pred CCCEEEEEcCcccHHHHHhc-------cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcc
Q 022592 141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL 197 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~ 197 (294)
++.+|||||||+|..+..++ .+++|+|+|+ .++.++.+|+..+|++ .+|+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 56799999999999876553 3799999997 2578899999888764 489999999
Q ss_pred cccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCCC---------------------------------CCCCCCHHH
Q 022592 198 SLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDP---------------------------------NTGGADPNK 241 (294)
Q Consensus 198 ~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~---------------------------------~~~~~~~~~ 241 (294)
+++|.+ ...++++++++|+|||.|++.+......+ .....+.++
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999864 46899999999999999999873321100 011148889
Q ss_pred HHHHHHHCCCeEEEEeccCCeEEEEEEEECC
Q 022592 242 FSKAVCDLGFAPVSKDFSNKMFIMFYFKKKE 272 (294)
Q Consensus 242 ~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~ 272 (294)
..++|+++||..+...+..-.|..++++|.+
T Consensus 214 ~~~~L~~aGF~~v~~~~~~~~f~~~~a~k~~ 244 (247)
T PRK15451 214 HKARLHKAGFEHSELWFQCFNFGSLVALKAE 244 (247)
T ss_pred HHHHHHHcCchhHHHHHHHHhHHHHhheecc
Confidence 9999999999998877777778778887754
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=1.8e-14 Score=123.63 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=94.1
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD 191 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD 191 (294)
..+++.+... ++.+|||+|||+|.++..++ ..|+|+|+|+ .++.+.+.|+..++++ ++||
T Consensus 20 ~~l~~~l~~~-~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 97 (197)
T PRK11207 20 SEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYD 97 (197)
T ss_pred HHHHHhcccC-CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcC
Confidence 4566666554 45799999999999999887 3799999997 2467788888877764 5799
Q ss_pred EEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCC-CC----CCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 192 VAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF-DP----NTGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 192 ~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~-~~----~~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
+|+++.+++|. +...++.++.++|+|||.+++....... .+ ....++.+++.+.++ ||+++...
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence 99999999885 4579999999999999997665432211 11 112368888988887 89887753
No 24
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.58 E-value=6.7e-14 Score=121.32 Aligned_cols=128 Identities=25% Similarity=0.357 Sum_probs=99.7
Q ss_pred HHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCCCCCCCCCcc
Q 022592 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD 191 (294)
Q Consensus 131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD 191 (294)
.++..+... ++.+|||+|||+|.++..++ ..++++|+++ .++.+..+|+.+.+++.++||
T Consensus 30 ~~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIGVF-KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhccC-CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 344444443 66799999999999888775 2799999986 257888999998888778999
Q ss_pred EEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-----------------------C-----------CCC
Q 022592 192 VAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-----------------------N-----------TGG 236 (294)
Q Consensus 192 ~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-----------------------~-----------~~~ 236 (294)
+|+++.++++. ++..+++++.++|+|||.+++.++...... . ...
T Consensus 109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAF 188 (223)
T ss_pred EEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhC
Confidence 99999999884 889999999999999999999875432110 0 012
Q ss_pred CCHHHHHHHHHHCCCeEEEEecc
Q 022592 237 ADPNKFSKAVCDLGFAPVSKDFS 259 (294)
Q Consensus 237 ~~~~~~~~~l~~~Gf~~~~~~~~ 259 (294)
++..++..+|+++||+++.....
T Consensus 189 ~~~~~~~~~l~~aGf~~~~~~~~ 211 (223)
T TIGR01934 189 PSQEELAAMLKEAGFEEVRYRSL 211 (223)
T ss_pred CCHHHHHHHHHHcCCccceeeee
Confidence 46788999999999998775443
No 25
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.58 E-value=2e-14 Score=128.30 Aligned_cols=127 Identities=16% Similarity=0.187 Sum_probs=98.5
Q ss_pred HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CC--CcEEEccCCCCCCCC
Q 022592 128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------ND--PSVIACDMSNTPLNS 187 (294)
Q Consensus 128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~--~~~~~~d~~~lp~~~ 187 (294)
.++++...+... .+.+|||||||+|+++..++ ..|+|+|++. .. +.++...++++|. .
T Consensus 103 KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 103 KWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred hHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 456778888655 77899999999999998776 4799999987 11 2223246677787 7
Q ss_pred CCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecC------CCCCCCCC---------CCHHHHHHHHHHCCC
Q 022592 188 SSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKS------RFDPNTGG---------ADPNKFSKAVCDLGF 251 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~------~~~~~~~~---------~~~~~~~~~l~~~Gf 251 (294)
+.||+|+|..+|+| .+|...|.++...|+|||.|++-.+.- ...|...+ .+...+..+|+++||
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF 260 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGF 260 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCC
Confidence 88999999999999 599999999999999999999853221 01111111 489999999999999
Q ss_pred eEEEE
Q 022592 252 APVSK 256 (294)
Q Consensus 252 ~~~~~ 256 (294)
..+++
T Consensus 261 ~~v~~ 265 (315)
T PF08003_consen 261 KDVRC 265 (315)
T ss_pred ceEEE
Confidence 98884
No 26
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.58 E-value=3.1e-14 Score=128.00 Aligned_cols=118 Identities=22% Similarity=0.324 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS 198 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~ 198 (294)
.++.+|||||||+|.++..++ .+|+|+|+++ .++.++.+|++.+|+++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 367899999999998765443 2699999987 3567888999999998889999999999
Q ss_pred ccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCC--------------CCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 199 LMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFD--------------PNTGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 199 l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~--------------~~~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
++|. +...+++++.++|+|||.|++.++...-. .....++..++..+|+++||..+.+.
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 9885 88899999999999999999987542110 01122577899999999999987653
No 27
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.57 E-value=1.7e-15 Score=130.66 Aligned_cols=115 Identities=17% Similarity=0.332 Sum_probs=92.3
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccCCC--------------CcEEEccCCCCCCCCCCccEEEEcccccCC-
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSND--------------PSVIACDMSNTPLNSSSVDVAVFCLSLMGI- 202 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~~--------------~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~- 202 (294)
++.+|||||||-|.++..++ ..|+|+|+++.. +.+....++++....++||+|+|..+|+|.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 67899999999999999998 499999999842 335555666655555899999999999995
Q ss_pred CHHHHHHHHHHhcCcCcEEEEEeecCCCC----------------CCC-----CCCCHHHHHHHHHHCCCeEEE
Q 022592 203 NFPNYLQEAQRVLKPSGWLLIAEVKSRFD----------------PNT-----GGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 203 ~~~~~l~el~r~LkpgG~l~i~e~~~~~~----------------~~~-----~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
++..+++.+.+++||||.++++.++..+. |.. -...++++..++..+|+.+..
T Consensus 139 dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~ 212 (243)
T COG2227 139 DPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIID 212 (243)
T ss_pred CHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence 99999999999999999999998765321 110 015778888888888988876
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.56 E-value=3e-14 Score=124.25 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=93.3
Q ss_pred EEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592 144 VIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI 202 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~ 202 (294)
+|||||||+|.++..++ ..|+|+|+|+ .++.++.+|+...|++ ++||+|++..+++|.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 69999999999888775 3689999986 2457888898766664 589999999999995
Q ss_pred -CHHHHHHHHHHhcCcCcEEEEEeecCCCCC-------CCCCCCHHHHHHHHHHCCCeEEEEeccCCe
Q 022592 203 -NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP-------NTGGADPNKFSKAVCDLGFAPVSKDFSNKM 262 (294)
Q Consensus 203 -~~~~~l~el~r~LkpgG~l~i~e~~~~~~~-------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 262 (294)
++..+++++.++|+|||.+++.++...... .....+..++..++.++||.++.......+
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLE 148 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence 889999999999999999999886432111 011257889999999999999885543333
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.56 E-value=6.5e-14 Score=122.53 Aligned_cols=114 Identities=23% Similarity=0.345 Sum_probs=93.0
Q ss_pred CCEEEEEcCcccHHHHHhc-----cceEEEeccC-----------CCCcEEEccCCCCCCCCCCccEEEEcccccCC-CH
Q 022592 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NF 204 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~ 204 (294)
..+|||||||+|.++..++ ..++++|+++ .++.++.+|+...++++++||+|++..+++|. ++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~ 114 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL 114 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence 4689999999999888776 2679999987 25688999999999888999999999999996 89
Q ss_pred HHHHHHHHHhcCcCcEEEEEeecCCCC---------CCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592 205 PNYLQEAQRVLKPSGWLLIAEVKSRFD---------PNTGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~e~~~~~~---------~~~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
..++.++.++|+|||.+++.++..... ......+.+.+.+++..+ |..+..
T Consensus 115 ~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 115 SQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred HHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEE
Confidence 999999999999999999986543211 112335778899999888 876653
No 30
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.55 E-value=8.2e-14 Score=119.34 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=94.8
Q ss_pred cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCCCCCCCC
Q 022592 127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSS 189 (294)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~ 189 (294)
.....++..+... ++.+|||+|||+|.++..++ ..|+|+|+|+. ++.+..+|+...+++ ++
T Consensus 17 ~~~~~l~~~~~~~-~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~ 94 (195)
T TIGR00477 17 TTHSAVREAVKTV-APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-ED 94 (195)
T ss_pred CchHHHHHHhccC-CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CC
Confidence 3345566666555 44699999999999999887 38999999971 345667777666654 57
Q ss_pred ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCC----C-CCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592 190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF----D-PNTGGADPNKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~----~-~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 258 (294)
||+|+++.+++|. +...+++++.++|+|||++++.++...- . +....++.+++..++. +|++.....
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e 169 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNE 169 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeec
Confidence 9999999999885 3568999999999999997776543211 1 1122478899999886 688887553
No 31
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.55 E-value=4.2e-15 Score=131.16 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=96.3
Q ss_pred CCCEEEEEcCcccHHHHHhc-------cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcc
Q 022592 141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL 197 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~ 197 (294)
++.+|||||||+|.++..++ .+++|+|+|+ .++.++.+|+..++++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 56799999999999887664 2699999986 2467899999988875 489999999
Q ss_pred cccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCC---------------------C------------CCCCCCCHHH
Q 022592 198 SLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRF---------------------D------------PNTGGADPNK 241 (294)
Q Consensus 198 ~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~---------------------~------------~~~~~~~~~~ 241 (294)
+++|. ++..+++++.++|+|||.+++.+..... . .....++.++
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~ 210 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIET 210 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHH
Confidence 99985 3578999999999999999998742210 0 0112368899
Q ss_pred HHHHHHHCCCeEEEEeccCCeEEEEEEE
Q 022592 242 FSKAVCDLGFAPVSKDFSNKMFIMFYFK 269 (294)
Q Consensus 242 ~~~~l~~~Gf~~~~~~~~~~~f~~i~~~ 269 (294)
+..+++++||..+........|..++.+
T Consensus 211 ~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 211 HKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred HHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 9999999999876654444444444443
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=1.3e-13 Score=122.96 Aligned_cols=125 Identities=13% Similarity=0.203 Sum_probs=94.5
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEE
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVA 193 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~V 193 (294)
...++..+... ++.+|||||||+|.++..++ ..|+|+|+|+ .++.++.+|+..++ +.++||+|
T Consensus 20 ~~~ll~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVPLE-NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLI 97 (258)
T ss_pred HHHHHhhCCCc-CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEE
Confidence 34566665443 56799999999999988776 3799999997 36778899998765 45689999
Q ss_pred EEcccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCC----------------CC-----CC---CCCCCHHHHHHHHHH
Q 022592 194 VFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSR----------------FD-----PN---TGGADPNKFSKAVCD 248 (294)
Q Consensus 194 i~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~----------------~~-----~~---~~~~~~~~~~~~l~~ 248 (294)
+++.+++|. +...++.++.++|+|||.+++...... +. .. ....+...+...+.+
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAP 177 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHh
Confidence 999999995 888999999999999999988531110 00 00 112466788999999
Q ss_pred CCCeEEE
Q 022592 249 LGFAPVS 255 (294)
Q Consensus 249 ~Gf~~~~ 255 (294)
+|+.+..
T Consensus 178 ~g~~v~~ 184 (258)
T PRK01683 178 AACRVDI 184 (258)
T ss_pred CCCceee
Confidence 9987543
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.54 E-value=2.6e-14 Score=128.36 Aligned_cols=125 Identities=22% Similarity=0.297 Sum_probs=88.6
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS 189 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~ 189 (294)
+.+++.+... ++.+|||||||.|.++..++ .+|+|+++|. +.+.+..+|..+++. +
T Consensus 52 ~~~~~~~~l~-~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~ 127 (273)
T PF02353_consen 52 DLLCEKLGLK-PGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---K 127 (273)
T ss_dssp HHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S
T ss_pred HHHHHHhCCC-CCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---C
Confidence 3445555443 88899999999999999987 3899999997 356788888877654 8
Q ss_pred ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecC------------------CCCCCCCCCCHHHHHHHHHH
Q 022592 190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKS------------------RFDPNTGGADPNKFSKAVCD 248 (294)
Q Consensus 190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~------------------~~~~~~~~~~~~~~~~~l~~ 248 (294)
||.|++..+++|. +...+++.+.++|+|||.+++-.+.. .+.|...-.+..++...+++
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~ 207 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAED 207 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhc
Confidence 9999999999996 67899999999999999999864331 11222223578899999999
Q ss_pred CCCeEEEEec
Q 022592 249 LGFAPVSKDF 258 (294)
Q Consensus 249 ~Gf~~~~~~~ 258 (294)
.||++.....
T Consensus 208 ~~l~v~~~~~ 217 (273)
T PF02353_consen 208 AGLEVEDVEN 217 (273)
T ss_dssp TT-EEEEEEE
T ss_pred CCEEEEEEEE
Confidence 9999988654
No 34
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.54 E-value=1.4e-14 Score=130.32 Aligned_cols=81 Identities=20% Similarity=0.439 Sum_probs=67.7
Q ss_pred CCCEEEEEcCcccHHHHHhcc--------ceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592 141 PSLVIADFGCGDARLAKSVKN--------KVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI 202 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~~--------~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~ 202 (294)
...+|||||||+|.++..++. .++|+|+|+ .++.+.++|+.++|+++++||+|++.++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 346899999999998887651 579999997 4678999999999999999999998765
Q ss_pred CHHHHHHHHHHhcCcCcEEEEEeec
Q 022592 203 NFPNYLQEAQRVLKPSGWLLIAEVK 227 (294)
Q Consensus 203 ~~~~~l~el~r~LkpgG~l~i~e~~ 227 (294)
...+.++.|+|+|||.|+++...
T Consensus 161 --~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 --PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred --CCCHHHHHhhccCCCEEEEEeCC
Confidence 23568999999999999997543
No 35
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.52 E-value=1.1e-14 Score=126.57 Aligned_cols=111 Identities=19% Similarity=0.292 Sum_probs=88.1
Q ss_pred CCEEEEEcCcccHHHHHhc---cceEEEeccCC---------------------CCcEEEccCCCCCCCCCCccEEEEcc
Q 022592 142 SLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------------DPSVIACDMSNTPLNSSSVDVAVFCL 197 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------------------~~~~~~~d~~~lp~~~~~fD~Vi~~~ 197 (294)
+.+|||+|||.|.++..|+ +.|+|+|+++. .+.+.+.|++... +.||+|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence 4689999999999999998 59999999982 1334444555443 4599999999
Q ss_pred cccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCC---------------------CCCCHHHHHHHHHHCCCeEEE
Q 022592 198 SLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT---------------------GGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 198 ~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~---------------------~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
+++|. |+..++..+.++|+|||.++|+++........ ...++.++..++...|+.+..
T Consensus 167 vleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~ 246 (282)
T KOG1270|consen 167 VLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVND 246 (282)
T ss_pred HHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhh
Confidence 99996 99999999999999999999997665321111 115889999999999998766
No 36
>PRK08317 hypothetical protein; Provisional
Probab=99.52 E-value=2.2e-13 Score=118.98 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=96.5
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC--------------CCCcEEEccCCCCCCCCCCcc
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVD 191 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD 191 (294)
++..+... ++.+|||+|||+|.++..++ ..++|+|+++ .++.+..+|+...++++++||
T Consensus 11 ~~~~~~~~-~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 11 TFELLAVQ-PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred HHHHcCCC-CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence 34444433 66799999999999888775 3789999986 246788889988888888999
Q ss_pred EEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCC---CCC----------------CCCCCCHHHHHHHHHHCCC
Q 022592 192 VAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSR---FDP----------------NTGGADPNKFSKAVCDLGF 251 (294)
Q Consensus 192 ~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~---~~~----------------~~~~~~~~~~~~~l~~~Gf 251 (294)
+|++..+++| .++..++.++.++|+|||.+++.+.... +.+ .........+..+|+++||
T Consensus 90 ~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 169 (241)
T PRK08317 90 AVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGL 169 (241)
T ss_pred EEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCC
Confidence 9999999998 4999999999999999999999864311 111 0111345678899999999
Q ss_pred eEEEEe
Q 022592 252 APVSKD 257 (294)
Q Consensus 252 ~~~~~~ 257 (294)
.++...
T Consensus 170 ~~~~~~ 175 (241)
T PRK08317 170 TDIEVE 175 (241)
T ss_pred CceeEE
Confidence 887643
No 37
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=1.3e-13 Score=122.81 Aligned_cols=126 Identities=18% Similarity=0.279 Sum_probs=100.0
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS 189 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~ 189 (294)
+.+++.+... ||.+|||||||.|.++..++ .+|+|+++|+ .++++...|..+++ +.
T Consensus 62 ~~~~~kl~L~-~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~ 137 (283)
T COG2230 62 DLILEKLGLK-PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EP 137 (283)
T ss_pred HHHHHhcCCC-CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cc
Confidence 4456666555 89999999999999999888 3899999998 26677777777765 34
Q ss_pred ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC--------------CCCCCHHHHHHHHHHCCCe
Q 022592 190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN--------------TGGADPNKFSKAVCDLGFA 252 (294)
Q Consensus 190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~--------------~~~~~~~~~~~~l~~~Gf~ 252 (294)
||-|++..+++|+ +.+.++..+.++|+|||.+++-.+.....+. ..-.+...+....+++||.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~ 217 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFV 217 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcE
Confidence 9999999999995 6899999999999999999997665433221 1124778899999999999
Q ss_pred EEEEecc
Q 022592 253 PVSKDFS 259 (294)
Q Consensus 253 ~~~~~~~ 259 (294)
+......
T Consensus 218 v~~~~~~ 224 (283)
T COG2230 218 VLDVESL 224 (283)
T ss_pred EehHhhh
Confidence 9875443
No 38
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.49 E-value=4.5e-13 Score=116.21 Aligned_cols=139 Identities=12% Similarity=0.096 Sum_probs=97.7
Q ss_pred HHhhhccCCC-cHHHHHHHHhhcc--CCCCEEEEEcCcccHHHHHhcc---ceEEEeccCC-------------------
Q 022592 117 YQEQMSHWPE-LPVNIIVKWLKDH--SPSLVIADFGCGDARLAKSVKN---KVFSFDLVSN------------------- 171 (294)
Q Consensus 117 ~~~~~~~~~~-~~~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~~------------------- 171 (294)
|......|.. .+-..+.+++... +++.+|||+|||.|..+..|+. .|+|+|+|+.
T Consensus 7 y~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~ 86 (213)
T TIGR03840 7 WQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQG 86 (213)
T ss_pred HhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccc
Confidence 3444456642 3334455554432 3567999999999999999983 8999999982
Q ss_pred --------CCcEEEccCCCCCCC-CCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCCC---CCCC
Q 022592 172 --------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDP---NTGG 236 (294)
Q Consensus 172 --------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~---~~~~ 236 (294)
++.++++|+.+++.. .+.||+|+-..+++|.+ +..++..+.++|+|||.+++..+...... .-..
T Consensus 87 ~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~ 166 (213)
T TIGR03840 87 EFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFS 166 (213)
T ss_pred cceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCC
Confidence 256789999887643 35799999998888863 45799999999999998777654321111 1123
Q ss_pred CCHHHHHHHHHHCCCeEEEE
Q 022592 237 ADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 237 ~~~~~~~~~l~~~Gf~~~~~ 256 (294)
++.+++.+++.. +|.+...
T Consensus 167 ~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 167 VSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred CCHHHHHHHhcC-CceEEEE
Confidence 688999888863 5666653
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.49 E-value=4.3e-13 Score=121.63 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=87.6
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCCCCCCCCccEEEEcccccCC-
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI- 202 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~- 202 (294)
++.+|||||||+|.++..++ ..|+|+|+|+. ++.+...|+...++ +++||+|++..+++|.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence 34599999999999998887 38999999972 45677778877665 6789999999999985
Q ss_pred --CHHHHHHHHHHhcCcCcEEEEEeecCC-CC----CCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 203 --NFPNYLQEAQRVLKPSGWLLIAEVKSR-FD----PNTGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 203 --~~~~~l~el~r~LkpgG~l~i~e~~~~-~~----~~~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
+...+++++.++|+|||+++++..... .. +....++..++.+.+. +|+++...
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 456899999999999999777543221 11 1123378899999887 49888753
No 40
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.49 E-value=8.6e-14 Score=114.29 Aligned_cols=86 Identities=27% Similarity=0.475 Sum_probs=75.1
Q ss_pred CCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC--CCCCCccEEEEcc
Q 022592 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCL 197 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~ 197 (294)
.+.+|||+|||+|.++..++ .+++|+|+|+ .+++++++|+.+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 45799999999999988777 3799999998 46899999999977 55 7899999999
Q ss_pred cccCC-CHHHHHHHHHHhcCcCcEEEEEeec
Q 022592 198 SLMGI-NFPNYLQEAQRVLKPSGWLLIAEVK 227 (294)
Q Consensus 198 ~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~ 227 (294)
+++|. ++..++.++.++|++||.+++.+..
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99885 7789999999999999999998766
No 41
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.49 E-value=3.5e-13 Score=113.20 Aligned_cols=122 Identities=23% Similarity=0.438 Sum_probs=95.7
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhcc----ceEEEeccC--------CCCcEEEccCCC-C-CCCCCCccEEEE
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN----KVFSFDLVS--------NDPSVIACDMSN-T-PLNSSSVDVAVF 195 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~----~v~gvD~s~--------~~~~~~~~d~~~-l-p~~~~~fD~Vi~ 195 (294)
+.+.+++. |+.+|||+|||.|.++..|.. .++|+|+++ ..+.++++|+.. + .+++++||.||+
T Consensus 5 ~~I~~~I~---pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 5 QIIAEWIE---PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred HHHHHHcC---CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence 45666665 778999999999999999973 689999998 467899999975 4 488999999999
Q ss_pred cccccCC-CHHHHHHHHHHhcCcCcEEEEEeecC-------------------------CC-CCCCCCCCHHHHHHHHHH
Q 022592 196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKS-------------------------RF-DPNTGGADPNKFSKAVCD 248 (294)
Q Consensus 196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~-------------------------~~-~~~~~~~~~~~~~~~l~~ 248 (294)
+.+|++. +|..+|+|+.|+ |...+++ +.+ ++ .|+...+|..+|+.+.++
T Consensus 82 sqtLQ~~~~P~~vL~EmlRV---gr~~IVs-FPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 82 SQTLQAVRRPDEVLEEMLRV---GRRAIVS-FPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred HhHHHhHhHHHHHHHHHHHh---cCeEEEE-ecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHH
Confidence 9999995 889999999877 4345554 111 11 233444799999999999
Q ss_pred CCCeEEEEec
Q 022592 249 LGFAPVSKDF 258 (294)
Q Consensus 249 ~Gf~~~~~~~ 258 (294)
.|+++++...
T Consensus 158 ~~i~I~~~~~ 167 (193)
T PF07021_consen 158 LGIRIEERVF 167 (193)
T ss_pred CCCEEEEEEE
Confidence 9999988543
No 42
>PRK06202 hypothetical protein; Provisional
Probab=99.49 E-value=7.9e-13 Score=116.14 Aligned_cols=113 Identities=15% Similarity=0.201 Sum_probs=86.2
Q ss_pred CCCEEEEEcCcccHHHHHhc---------cceEEEeccC------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592 141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL 199 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l 199 (294)
++.+|||||||+|.++..++ ..|+|+|+|+ .++.+...+...++.++++||+|+++.++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 55699999999999877664 2799999998 24567777777777777899999999999
Q ss_pred cCC-C--HHHHHHHHHHhcCcCcEEEEEeecCC------------------CCCC------CCCCCHHHHHHHHHHCCCe
Q 022592 200 MGI-N--FPNYLQEAQRVLKPSGWLLIAEVKSR------------------FDPN------TGGADPNKFSKAVCDLGFA 252 (294)
Q Consensus 200 ~~~-~--~~~~l~el~r~LkpgG~l~i~e~~~~------------------~~~~------~~~~~~~~~~~~l~~~Gf~ 252 (294)
||. + ...+++++.++++ |.+++.++... +... ...++.+++.+++++ ||+
T Consensus 140 hh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~ 216 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWR 216 (232)
T ss_pred ecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCe
Confidence 996 3 3579999999998 56666554421 1111 123799999999999 999
Q ss_pred EEEE
Q 022592 253 PVSK 256 (294)
Q Consensus 253 ~~~~ 256 (294)
+...
T Consensus 217 ~~~~ 220 (232)
T PRK06202 217 VERQ 220 (232)
T ss_pred EEec
Confidence 8763
No 43
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.46 E-value=6.1e-13 Score=115.82 Aligned_cols=128 Identities=16% Similarity=0.228 Sum_probs=94.5
Q ss_pred HHHHHHhhc-cCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCC
Q 022592 130 NIIVKWLKD-HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS 189 (294)
Q Consensus 130 ~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~ 189 (294)
..+++++.. ..++.+|||||||+|.++..++ ..|+|+|+|+ .++.+.++|+..++ ++
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~ 119 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GE 119 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CC
Confidence 345666653 2356799999999999998887 4899999997 15678888988765 78
Q ss_pred ccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecC----------CCC-----CCCCCCCHHHHHHHHHHCCC
Q 022592 190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKS----------RFD-----PNTGGADPNKFSKAVCDLGF 251 (294)
Q Consensus 190 fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~----------~~~-----~~~~~~~~~~~~~~l~~~Gf 251 (294)
||+|++..+++|. +...++.++.+++++++.+.+..... .+. .....++.+++.++++++||
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 199 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGW 199 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCc
Confidence 9999999999885 35678999999998776666542110 111 11122588999999999999
Q ss_pred eEEEEeccC
Q 022592 252 APVSKDFSN 260 (294)
Q Consensus 252 ~~~~~~~~~ 260 (294)
+++......
T Consensus 200 ~v~~~~~~~ 208 (219)
T TIGR02021 200 KIVREGLVS 208 (219)
T ss_pred eeeeeeccc
Confidence 999865443
No 44
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.46 E-value=1.8e-12 Score=110.21 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=83.9
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~ 200 (294)
++.+|||||||+|..+..++ .+|+++|+++ .+++++.+|+.+++. .++||+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 46799999999999888765 3899999997 257889999988776 778999998642
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.++..++++++++|+|||.+++.... .....+..+.+..|+.+..
T Consensus 122 -~~~~~~l~~~~~~LkpGG~lv~~~~~---------~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 122 -ASLSDLVELCLPLLKPGGRFLALKGR---------DPEEEIAELPKALGGKVEE 166 (187)
T ss_pred -cCHHHHHHHHHHhcCCCeEEEEEeCC---------ChHHHHHHHHHhcCceEee
Confidence 47789999999999999999997532 1346788888888998766
No 45
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.45 E-value=1.2e-13 Score=107.02 Aligned_cols=84 Identities=24% Similarity=0.435 Sum_probs=68.8
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccC-CCCCCCCCCccEEEEcc-
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDM-SNTPLNSSSVDVAVFCL- 197 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~-~~lp~~~~~fD~Vi~~~- 197 (294)
|+.+|||||||+|.++..++ .+|+|+|+|+ +++.++.+|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 46799999999999988886 3899999997 5788999999 33333 35699999999
Q ss_pred cccC-C---CHHHHHHHHHHhcCcCcEEEEEe
Q 022592 198 SLMG-I---NFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 198 ~l~~-~---~~~~~l~el~r~LkpgG~l~i~e 225 (294)
++++ . +...+++.+.+.|+|||+|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5554 2 45789999999999999999864
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.45 E-value=6.8e-13 Score=128.41 Aligned_cols=126 Identities=17% Similarity=0.250 Sum_probs=97.3
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCC--CCCCCCCCc
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMS--NTPLNSSSV 190 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~--~lp~~~~~f 190 (294)
...++..+... ++.+|||||||+|.++..++ ..|+|+|+++ .++.++++|+. .+++++++|
T Consensus 26 ~~~il~~l~~~-~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 26 RPEILSLLPPY-EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred hhHHHhhcCcc-CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 34566666543 45699999999999999887 4799999987 25678888986 467788899
Q ss_pred cEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCCCC-------CCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 191 DVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSRFD-------PNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 191 D~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~-------~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
|+|++..+++|.. ...++.++.++|+|||.+++.|...... ..........+..++.++||....
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence 9999999999953 5689999999999999999987432111 011123577889999999997764
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.44 E-value=5.2e-12 Score=106.57 Aligned_cols=127 Identities=15% Similarity=0.207 Sum_probs=93.2
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhcc---ceEEEeccCC--------------CCcEEEccCCCCCCCCCCccEEE
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVKN---KVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVDVAV 194 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~fD~Vi 194 (294)
+...+... ++.+|||+|||+|.++..++. .|+++|+++. ++.++.+|+...+ .++||+|+
T Consensus 11 l~~~l~~~-~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi 87 (179)
T TIGR00537 11 LEANLREL-KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVIL 87 (179)
T ss_pred HHHHHHhc-CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEE
Confidence 44444444 456899999999999888873 6999999982 3567778876644 35899999
Q ss_pred EcccccCCC----------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCe
Q 022592 195 FCLSLMGIN----------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFA 252 (294)
Q Consensus 195 ~~~~l~~~~----------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 252 (294)
++..+++.+ ...++.++.++|+|||.+++...... ...++...|++.||.
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------~~~~~~~~l~~~gf~ 159 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------GEPDTFDKLDERGFR 159 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------ChHHHHHHHHhCCCe
Confidence 998776531 24679999999999999999763221 257889999999999
Q ss_pred EEEEeccCCeEEEEEEE
Q 022592 253 PVSKDFSNKMFIMFYFK 269 (294)
Q Consensus 253 ~~~~~~~~~~f~~i~~~ 269 (294)
..........+.-+...
T Consensus 160 ~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 160 YEIVAERGLFFEELFAI 176 (179)
T ss_pred EEEEEEeecCceEEEEE
Confidence 88865554444444433
No 48
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.44 E-value=2e-12 Score=110.51 Aligned_cols=126 Identities=18% Similarity=0.320 Sum_probs=91.4
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC--------CCCcEEEccCCC-C-CCCCCCccEEEE
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------NDPSVIACDMSN-T-PLNSSSVDVAVF 195 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------~~~~~~~~d~~~-l-p~~~~~fD~Vi~ 195 (294)
+.+.+.+. ++.+|||||||+|.++..++ ..++|+|+++ .++.++.+|+.. + ++++++||+|++
T Consensus 5 ~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 5 ESILNLIP---PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred HHHHHhcC---CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEE
Confidence 44555553 55799999999999988775 2679999987 357788899875 4 477789999999
Q ss_pred cccccCC-CHHHHHHHHHHhcCcCcEEEEEee----------cC------------CCC-CCCCCCCHHHHHHHHHHCCC
Q 022592 196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEV----------KS------------RFD-PNTGGADPNKFSKAVCDLGF 251 (294)
Q Consensus 196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~----------~~------------~~~-~~~~~~~~~~~~~~l~~~Gf 251 (294)
+.+++|. ++..+++++.|+++++ .+.+..+ .. .+. +....++.+++.++++++||
T Consensus 82 ~~~l~~~~d~~~~l~e~~r~~~~~-ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 82 SQTLQATRNPEEILDEMLRVGRHA-IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred hhHhHcCcCHHHHHHHHHHhCCeE-EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 9999995 8899999998887653 1111100 00 000 11224689999999999999
Q ss_pred eEEEEecc
Q 022592 252 APVSKDFS 259 (294)
Q Consensus 252 ~~~~~~~~ 259 (294)
+++.....
T Consensus 161 ~v~~~~~~ 168 (194)
T TIGR02081 161 RILDRAAF 168 (194)
T ss_pred EEEEEEEe
Confidence 99885543
No 49
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.44 E-value=2.4e-12 Score=112.91 Aligned_cols=117 Identities=14% Similarity=0.239 Sum_probs=90.5
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------CCcEEEccCCCCC-CCCCCccEEEEcccccCC
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTP-LNSSSVDVAVFCLSLMGI 202 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------~~~~~~~d~~~lp-~~~~~fD~Vi~~~~l~~~ 202 (294)
++.+|||||||+|.++..+. ..++++|+++. .+.+..+|+...+ ...+.||+|++..+++|.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 56799999999999887775 47999999872 2456666666554 345789999999999985
Q ss_pred -CHHHHHHHHHHhcCcCcEEEEEeecCCCC---------------------CCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 203 -NFPNYLQEAQRVLKPSGWLLIAEVKSRFD---------------------PNTGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 203 -~~~~~l~el~r~LkpgG~l~i~e~~~~~~---------------------~~~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
++..++..+.++|+|||.+++..+..... .....++.+++.++++++||+++...
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 128 PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 88899999999999999999875432110 01123588899999999999998753
No 50
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.44 E-value=2.2e-12 Score=111.68 Aligned_cols=115 Identities=16% Similarity=0.229 Sum_probs=83.9
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEccCCCCC--------CCCCCccEE
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVA 193 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~d~~~lp--------~~~~~fD~V 193 (294)
+...+....++.+|||||||+|.++..++ ..|+|+|+++ +++.++++|+.+.+ +.+++||+|
T Consensus 42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 34444433467799999999999988775 3799999987 46889999998853 667889999
Q ss_pred EEcccccCC-CH-----------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 194 VFCLSLMGI-NF-----------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 194 i~~~~l~~~-~~-----------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
++..+.++. ++ ..++.++.++|+|||.|++..+... ...++...+.. +|..++
T Consensus 122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~--------~~~~~l~~l~~-~f~~v~ 186 (209)
T PRK11188 122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE--------GFDEYLREIRS-LFTKVK 186 (209)
T ss_pred ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc--------CHHHHHHHHHh-CceEEE
Confidence 998877653 21 3589999999999999999765431 22444443333 676666
No 51
>PRK04266 fibrillarin; Provisional
Probab=99.43 E-value=4.4e-12 Score=110.93 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCcccHHHHHhcc-----ceEEEeccC-------------CCCcEEEccCCCC----CCCCCCccEEEEcc
Q 022592 140 SPSLVIADFGCGDARLAKSVKN-----KVFSFDLVS-------------NDPSVIACDMSNT----PLNSSSVDVAVFCL 197 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~-------------~~~~~~~~d~~~l----p~~~~~fD~Vi~~~ 197 (294)
.++.+|||+|||+|.++..++. .|+|+|+++ .++.++.+|+... ++ .++||+|++..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~ 149 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDV 149 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECC
Confidence 3678999999999999888862 699999997 3678888888652 22 25699998643
Q ss_pred cccCC-CHHHHHHHHHHhcCcCcEEEEE-eecCCCCCCCC-CCCHHHHHHHHHHCCCeEEEEeccCCe---EEEEEEEE
Q 022592 198 SLMGI-NFPNYLQEAQRVLKPSGWLLIA-EVKSRFDPNTG-GADPNKFSKAVCDLGFAPVSKDFSNKM---FIMFYFKK 270 (294)
Q Consensus 198 ~l~~~-~~~~~l~el~r~LkpgG~l~i~-e~~~~~~~~~~-~~~~~~~~~~l~~~Gf~~~~~~~~~~~---f~~i~~~k 270 (294)
. .. ....++.++.++|||||.++|+ .+. ..+.... .....+..+.++++||+++.......+ ++++++++
T Consensus 150 ~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~-~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 150 A--QPNQAEIAIDNAEFFLKDGGYLLLAIKAR-SIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred C--ChhHHHHHHHHHHHhcCCCcEEEEEEecc-cccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 2 11 1235689999999999999994 221 1111000 011234569999999999986554333 56666654
No 52
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=4.2e-13 Score=112.85 Aligned_cols=91 Identities=26% Similarity=0.351 Sum_probs=77.4
Q ss_pred HhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCc-EEEccCCCCC-CCCCCccEE
Q 022592 135 WLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPS-VIACDMSNTP-LNSSSVDVA 193 (294)
Q Consensus 135 ~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~-~~~~d~~~lp-~~~~~fD~V 193 (294)
++... ....||+||||||..-.+.. ..|+++|+++ .++. |++++.+++| +++++||.|
T Consensus 71 ~~gk~-~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 71 FLGKS-GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred Hhccc-CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeE
Confidence 44433 33478999999999887775 4899999998 2444 8899999998 899999999
Q ss_pred EEcccccC-CCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 194 VFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 194 i~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
|+.++|.- .++.+.|+++.|+|+|||++++.|.
T Consensus 150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999985 6999999999999999999999873
No 53
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.41 E-value=5e-12 Score=115.61 Aligned_cols=121 Identities=20% Similarity=0.284 Sum_probs=90.0
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD 191 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD 191 (294)
+++.+.. .+..+|||||||+|.++..++ .+++++|+.. ++++++.+|+...+++. +|
T Consensus 141 l~~~~~~-~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D 217 (306)
T TIGR02716 141 LLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--AD 217 (306)
T ss_pred HHHHcCC-CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CC
Confidence 4444433 255799999999999998876 2688999743 35778999998766653 69
Q ss_pred EEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecCCC--CCC-----------------CCCCCHHHHHHHHHHC
Q 022592 192 VAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKSRF--DPN-----------------TGGADPNKFSKAVCDL 249 (294)
Q Consensus 192 ~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~--~~~-----------------~~~~~~~~~~~~l~~~ 249 (294)
+|+++.++|+.+. ..++++++++|+|||.++|.|+...- .+. ......+++.++|+++
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL 297 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHc
Confidence 9999999987543 47899999999999999999863211 110 0112468899999999
Q ss_pred CCeEEE
Q 022592 250 GFAPVS 255 (294)
Q Consensus 250 Gf~~~~ 255 (294)
||+.+.
T Consensus 298 Gf~~v~ 303 (306)
T TIGR02716 298 GYKDVT 303 (306)
T ss_pred CCCeeE
Confidence 998775
No 54
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.41 E-value=7e-12 Score=108.11 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=74.6
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEc
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC 196 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~ 196 (294)
+...+...+++.+|||||||+|.++..++ ..++|+|+|+ .++.+..+|+.. |+++++||+|++.
T Consensus 34 ~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~ 112 (204)
T TIGR03587 34 FARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTK 112 (204)
T ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEEC
Confidence 33334334456789999999999888775 3699999998 356788899888 8889999999999
Q ss_pred ccccCCC---HHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 197 LSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 197 ~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
.+|+|.+ ...+++++.|++ ++.++|.++..
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 9999964 467888888887 57888888654
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.40 E-value=5.8e-12 Score=110.08 Aligned_cols=126 Identities=19% Similarity=0.244 Sum_probs=87.0
Q ss_pred HHHHHHhhc--cCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCC
Q 022592 130 NIIVKWLKD--HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS 188 (294)
Q Consensus 130 ~~~~~~l~~--~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~ 188 (294)
..++.++.. ..++.+|||||||+|.++..++ ..|+|+|+|+ .++.+..+|+ +..++
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~ 126 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLG 126 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccC
Confidence 345566654 3356799999999999988886 3799999986 1466777774 33467
Q ss_pred CccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeec----------CCCC-----CCCCCCCHHHHHHHHHHCC
Q 022592 189 SVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVK----------SRFD-----PNTGGADPNKFSKAVCDLG 250 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~----------~~~~-----~~~~~~~~~~~~~~l~~~G 250 (294)
+||+|++..+++|. +...++..+.+.+++++.+.+.... ..+. .....++..++.++++.+|
T Consensus 127 ~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 206 (230)
T PRK07580 127 RFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAG 206 (230)
T ss_pred CcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCC
Confidence 89999999999874 3457788888877554444332110 0110 1112357889999999999
Q ss_pred CeEEEEec
Q 022592 251 FAPVSKDF 258 (294)
Q Consensus 251 f~~~~~~~ 258 (294)
|++.....
T Consensus 207 f~~~~~~~ 214 (230)
T PRK07580 207 FKVVRTER 214 (230)
T ss_pred CceEeeee
Confidence 99988544
No 56
>PRK06922 hypothetical protein; Provisional
Probab=99.40 E-value=1.5e-12 Score=127.43 Aligned_cols=122 Identities=26% Similarity=0.415 Sum_probs=86.6
Q ss_pred HHHHHhcChhhHHHHHHh--HHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC
Q 022592 99 ALDYFNENPALFDMYHSG--YQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN 171 (294)
Q Consensus 99 ~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~ 171 (294)
.+++|...++.++.+... |......+ ...... +....++.+|||||||+|.++..++ ..|+|+|+|+.
T Consensus 379 ~fd~fg~r~D~~dRf~~~~~yle~m~~~----~~~k~~-i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ 453 (677)
T PRK06922 379 LFDFFGLRKDAYDRFHNEEVYLEHMNSS----ADDKRI-ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISEN 453 (677)
T ss_pred HHHHhccChhhHhHHHhHHHHHHhcccc----HHHHHH-HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHH
Confidence 345666666667665532 22222221 111112 2222256799999999999887765 38999999982
Q ss_pred --------------CCcEEEccCCCCC--CCCCCccEEEEcccccCC--------------CHHHHHHHHHHhcCcCcEE
Q 022592 172 --------------DPSVIACDMSNTP--LNSSSVDVAVFCLSLMGI--------------NFPNYLQEAQRVLKPSGWL 221 (294)
Q Consensus 172 --------------~~~~~~~d~~~lp--~~~~~fD~Vi~~~~l~~~--------------~~~~~l~el~r~LkpgG~l 221 (294)
++.++++|+.++| +++++||+|+++.++|+. +...++++++++|||||.+
T Consensus 454 MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrL 533 (677)
T PRK06922 454 VIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRI 533 (677)
T ss_pred HHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEE
Confidence 3466888998887 788999999999988852 3468999999999999999
Q ss_pred EEEe
Q 022592 222 LIAE 225 (294)
Q Consensus 222 ~i~e 225 (294)
++.+
T Consensus 534 II~D 537 (677)
T PRK06922 534 IIRD 537 (677)
T ss_pred EEEe
Confidence 9986
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.38 E-value=4.2e-12 Score=119.44 Aligned_cols=122 Identities=21% Similarity=0.283 Sum_probs=88.9
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCC------------CCcEEEccCCCCCCCCCCccEEEE
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN------------DPSVIACDMSNTPLNSSSVDVAVF 195 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~------------~~~~~~~d~~~lp~~~~~fD~Vi~ 195 (294)
+++.+... ++.+|||||||+|.++..++ ..|+|+|+|+. .+.+..+|...+ +++||+|++
T Consensus 159 l~~~l~l~-~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs 234 (383)
T PRK11705 159 ICRKLQLK-PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVS 234 (383)
T ss_pred HHHHhCCC-CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEE
Confidence 44444333 67799999999999988776 37999999982 345666666554 468999999
Q ss_pred cccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCC-------------CCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592 196 CLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFD-------------PNTGGADPNKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 196 ~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~-------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 258 (294)
..+++|. ++..+++++.++|+|||.+++..+..... |.....+..++..+++ .||.+..+..
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 9999985 45789999999999999999976532211 1111246778777766 5898887543
No 58
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.38 E-value=8.7e-12 Score=105.56 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=79.8
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~ 200 (294)
++.+|||||||+|.++..++ .+|+|+|+++ .++.++.+|+.+++ ..++||+|++.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 46799999999999877765 3799999997 25788999998874 357899999875 2
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH---CCCeEEEEec
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD---LGFAPVSKDF 258 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~---~Gf~~~~~~~ 258 (294)
.+...++..+.++|+|||.+++..- .....++..+.++ .||+.+....
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~~---------~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYKG---------KKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEcC---------CCcHHHHHHHHHhhhhcCceEeeccc
Confidence 3567788899999999999998631 1133555555555 7999888543
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.38 E-value=1.1e-12 Score=112.97 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=83.1
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccC-CCCC--CCCCCccEEEEcc
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDM-SNTP--LNSSSVDVAVFCL 197 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~-~~lp--~~~~~fD~Vi~~~ 197 (294)
++.+|||||||+|.++..++ ..|+|+|+|+ .++.++++|+ ..++ +++++||+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 45689999999999988775 3799999997 3577899998 6666 7778999999876
Q ss_pred cccCC---------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592 198 SLMGI---------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254 (294)
Q Consensus 198 ~l~~~---------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 254 (294)
...+. ....+++++.++|+|||.|+++..... ....+.+.++..||.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH--------HHHHHHHHHHhCccccc
Confidence 65431 247899999999999999999742221 23577888899998665
No 60
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=1.1e-11 Score=107.84 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=98.3
Q ss_pred hhhHHHHHHhHHhhhccCC-CcHHHHHHHHhhcc--CCCCEEEEEcCcccHHHHHhcc---ceEEEeccCC---------
Q 022592 107 PALFDMYHSGYQEQMSHWP-ELPVNIIVKWLKDH--SPSLVIADFGCGDARLAKSVKN---KVFSFDLVSN--------- 171 (294)
Q Consensus 107 ~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~~--------- 171 (294)
++.|+. .|......|. ..+-..+.+++... +++.+|||+|||.|..+..|+. .|+|+|+|+.
T Consensus 3 ~~~Wd~---rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~ 79 (218)
T PRK13255 3 PDFWHE---KWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAEN 79 (218)
T ss_pred HhHHHH---HHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHc
Confidence 344555 2333334564 44444455555321 3557999999999999999983 8999999972
Q ss_pred ------------------CCcEEEccCCCCCCC-CCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeec-C
Q 022592 172 ------------------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVK-S 228 (294)
Q Consensus 172 ------------------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~-~ 228 (294)
++.+.++|+.+++.. .+.||+|+-..+++|.+ +..++..+.++|+|||.++++... .
T Consensus 80 ~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~ 159 (218)
T PRK13255 80 GLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP 159 (218)
T ss_pred CCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence 245678899887543 25799999999988863 568999999999999975553322 1
Q ss_pred CCCCCC--CCCCHHHHHHHHHHCCCeEEEE
Q 022592 229 RFDPNT--GGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 229 ~~~~~~--~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
...... ..++.+++.+++.. +|.+...
T Consensus 160 ~~~~~gPp~~~~~~el~~~~~~-~~~i~~~ 188 (218)
T PRK13255 160 QEELAGPPFSVSDEEVEALYAG-CFEIELL 188 (218)
T ss_pred CccCCCCCCCCCHHHHHHHhcC-CceEEEe
Confidence 111111 13688999998863 3766653
No 61
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.37 E-value=9e-13 Score=100.12 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=48.0
Q ss_pred EEEcCcccHHHHHhc-----cceEEEeccCCCC---------------cEEEccCCCCC--CCCCCccEEEEcccccCC-
Q 022592 146 ADFGCGDARLAKSVK-----NKVFSFDLVSNDP---------------SVIACDMSNTP--LNSSSVDVAVFCLSLMGI- 202 (294)
Q Consensus 146 LDiGcG~G~~~~~l~-----~~v~gvD~s~~~~---------------~~~~~d~~~lp--~~~~~fD~Vi~~~~l~~~- 202 (294)
||||||+|.++..+. .+++|+|+|+..+ .....+..+.. ...++||+|+++.++||.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999888775 3789999999433 12222222221 112589999999999996
Q ss_pred CHHHHHHHHHHhcCcCcEE
Q 022592 203 NFPNYLQEAQRVLKPSGWL 221 (294)
Q Consensus 203 ~~~~~l~el~r~LkpgG~l 221 (294)
++..+++.+.++|+|||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 8999999999999999986
No 62
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.36 E-value=3.4e-12 Score=108.28 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=85.5
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhcc---ceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEE
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVKN---KVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAV 194 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi 194 (294)
+++.+... +..++||+|||.|+.+.+|+. .|+++|.|+ -.+...+.|+....++ +.||+|+
T Consensus 22 v~~a~~~~-~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 22 VLEAVPLL-KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp HHHHCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred HHHHHhhc-CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEE
Confidence 44444444 456999999999999999983 899999998 1466788899887775 6799999
Q ss_pred EcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCC-----CCCCHHHHHHHHHHCCCeEEEE
Q 022592 195 FCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT-----GGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 195 ~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~-----~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
+..+++|. ..+.+++.+...++|||++++..+........ -.+...++...+. ||+++.-
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 99899885 35678999999999999999865433211111 1135566776666 7988773
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.35 E-value=9.1e-12 Score=108.46 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=91.2
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccCC---------------CCcEEEccCCCCCCC-CCCccEEEEcccccC
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMG 201 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~ 201 (294)
.+.+|||+|||+|.++..++ ..++++|+++. ++.+...|+...+.. .++||+|++..+++|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 46799999999999888775 47999999861 366777777766544 378999999999998
Q ss_pred C-CHHHHHHHHHHhcCcCcEEEEEeecCCC----------------CCC-----CCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 202 I-NFPNYLQEAQRVLKPSGWLLIAEVKSRF----------------DPN-----TGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 202 ~-~~~~~l~el~r~LkpgG~l~i~e~~~~~----------------~~~-----~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
. ++..++.++.++|+|||.+++....... .+. ...++..++.++++++||++++..
T Consensus 125 ~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 125 VPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 5 8899999999999999999987643211 000 112477899999999999998854
No 64
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.35 E-value=7.9e-12 Score=105.32 Aligned_cols=130 Identities=14% Similarity=0.210 Sum_probs=88.0
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC-
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN- 203 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~- 203 (294)
.-.++||+|||.|.++..|+ ..++++|+|+ +++.+++.|+... .|+++||+|+++.++++.+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSS
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCC
Confidence 34589999999999999998 4899999997 5789999999775 3678999999999999863
Q ss_pred ---HHHHHHHHHHhcCcCcEEEEEeecCCC-CCCCCCCCHHHHHHHHHHCCCeEEE-----EeccCCeEEEEEEEECC
Q 022592 204 ---FPNYLQEAQRVLKPSGWLLIAEVKSRF-DPNTGGADPNKFSKAVCDLGFAPVS-----KDFSNKMFIMFYFKKKE 272 (294)
Q Consensus 204 ---~~~~l~el~r~LkpgG~l~i~e~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~-----~~~~~~~f~~i~~~k~~ 272 (294)
...++..+...|.|||.|++..+.... ......+..+++..+|.+. |..++ -...+..-.+.-|++..
T Consensus 122 ~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (201)
T PF05401_consen 122 AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECRGGSPNEDCLLARFRNPV 198 (201)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-SSTTSEEEEEEEE--S
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEcCCCCCCceEeeeecCCc
Confidence 347899999999999999998765421 1111235778899988875 44444 12345666666676653
No 65
>PTZ00146 fibrillarin; Provisional
Probab=99.34 E-value=6e-11 Score=106.59 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCC---CCCCCCCccEEEEcc
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSN---TPLNSSSVDVAVFCL 197 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~---lp~~~~~fD~Vi~~~ 197 (294)
.++.+|||+|||+|.++..++ ..|+++|+++ .++.++.+|+.. .++..++||+|++..
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 367899999999999988887 3699999986 377888889854 222345799999876
Q ss_pred cccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH----HHHHHHCCCeEEEEec---cCCeEEEEEEEE
Q 022592 198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF----SKAVCDLGFAPVSKDF---SNKMFIMFYFKK 270 (294)
Q Consensus 198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~----~~~l~~~Gf~~~~~~~---~~~~f~~i~~~k 270 (294)
. +..+...++.++.++|||||.|+|. +..... ....+++++ .+.|+++||++++... -...+.+++.+.
T Consensus 211 a-~pdq~~il~~na~r~LKpGG~~vI~-ika~~i--d~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~ 286 (293)
T PTZ00146 211 A-QPDQARIVALNAQYFLKNGGHFIIS-IKANCI--DSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVY 286 (293)
T ss_pred C-CcchHHHHHHHHHHhccCCCEEEEE-Eecccc--ccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEE
Confidence 4 2224446667899999999999994 332221 223344554 4789999999777332 233344455444
Q ss_pred C
Q 022592 271 K 271 (294)
Q Consensus 271 ~ 271 (294)
.
T Consensus 287 ~ 287 (293)
T PTZ00146 287 R 287 (293)
T ss_pred c
Confidence 3
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.32 E-value=1.2e-12 Score=99.98 Aligned_cols=75 Identities=27% Similarity=0.597 Sum_probs=61.9
Q ss_pred EEEEcCcccHHHHHhc--------cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEc-ccccC
Q 022592 145 IADFGCGDARLAKSVK--------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFC-LSLMG 201 (294)
Q Consensus 145 VLDiGcG~G~~~~~l~--------~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~-~~l~~ 201 (294)
|||+|||+|..+..+. ..++|+|+|+ ..++++++|+.++++.+++||+|+++ .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999887765 4789999997 36789999999999888999999995 44888
Q ss_pred CC---HHHHHHHHHHhcCcCc
Q 022592 202 IN---FPNYLQEAQRVLKPSG 219 (294)
Q Consensus 202 ~~---~~~~l~el~r~LkpgG 219 (294)
.+ ...+++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 64 5689999999999998
No 67
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.31 E-value=2.4e-11 Score=111.24 Aligned_cols=132 Identities=18% Similarity=0.282 Sum_probs=87.4
Q ss_pred HHHHHHHhhcc--CCCCEEEEEcCcccHHHHHhc---cceEEEeccCC--------------------CCcEEEccCCCC
Q 022592 129 VNIIVKWLKDH--SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------------DPSVIACDMSNT 183 (294)
Q Consensus 129 ~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~--------------------~~~~~~~d~~~l 183 (294)
++.++.++... .++.+|||||||+|.++..++ ..|+|+|+|+. ++.+...|+..+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l 209 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL 209 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc
Confidence 34566666542 256799999999999998887 37999999982 234566666543
Q ss_pred CCCCCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecC-----------CCC-CCC----CCCCHHHHHH
Q 022592 184 PLNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKS-----------RFD-PNT----GGADPNKFSK 244 (294)
Q Consensus 184 p~~~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~-----------~~~-~~~----~~~~~~~~~~ 244 (294)
+++||+|++..+++|... ..+++.+.+ +.+||.++...... .+. +.. ..++.+++..
T Consensus 210 ---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~ 285 (315)
T PLN02585 210 ---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVER 285 (315)
T ss_pred ---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHH
Confidence 578999999999988532 345666654 45555544321110 111 110 1137899999
Q ss_pred HHHHCCCeEEEEeccCCeEE
Q 022592 245 AVCDLGFAPVSKDFSNKMFI 264 (294)
Q Consensus 245 ~l~~~Gf~~~~~~~~~~~f~ 264 (294)
+|+++||++.........||
T Consensus 286 lL~~AGf~v~~~~~~~~~~y 305 (315)
T PLN02585 286 ALKKAGWKVARREMTATQFY 305 (315)
T ss_pred HHHHCCCEEEEEEEeeccee
Confidence 99999999988666555554
No 68
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.29 E-value=1.9e-11 Score=105.27 Aligned_cols=115 Identities=22% Similarity=0.394 Sum_probs=86.8
Q ss_pred EEEEEcCcccHHHHHhc-------cceEEEeccCC--------------CCcEEEccCCC----CCCCCCCccEEEEccc
Q 022592 144 VIADFGCGDARLAKSVK-------NKVFSFDLVSN--------------DPSVIACDMSN----TPLNSSSVDVAVFCLS 198 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~-------~~v~gvD~s~~--------------~~~~~~~d~~~----lp~~~~~fD~Vi~~~~ 198 (294)
+||+||||.|.....+. -.|+++|.|+. ++...+.|+.. -|...+++|+|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 79999999998766554 17899999982 33445556543 3566789999999999
Q ss_pred ccCC---CHHHHHHHHHHhcCcCcEEEEEeecC----------------CCC-CCCC----CCCHHHHHHHHHHCCCeEE
Q 022592 199 LMGI---NFPNYLQEAQRVLKPSGWLLIAEVKS----------------RFD-PNTG----GADPNKFSKAVCDLGFAPV 254 (294)
Q Consensus 199 l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~----------------~~~-~~~~----~~~~~~~~~~l~~~Gf~~~ 254 (294)
|... ....++..+.++|||||.|++-|... .++ ..++ .++.+++..+++++||..+
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~ 233 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEV 233 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchh
Confidence 9875 35689999999999999999986432 111 1111 2689999999999999988
Q ss_pred EEec
Q 022592 255 SKDF 258 (294)
Q Consensus 255 ~~~~ 258 (294)
..+.
T Consensus 234 ~~~~ 237 (264)
T KOG2361|consen 234 QLEV 237 (264)
T ss_pred cccc
Confidence 7543
No 69
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.28 E-value=2.1e-11 Score=109.21 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=69.1
Q ss_pred CCCEEEEEcCcccH----HHHHhc----------cceEEEeccCC-----------------------------------
Q 022592 141 PSLVIADFGCGDAR----LAKSVK----------NKVFSFDLVSN----------------------------------- 171 (294)
Q Consensus 141 ~~~~VLDiGcG~G~----~~~~l~----------~~v~gvD~s~~----------------------------------- 171 (294)
++.+|||+|||+|. ++..++ ..|+|+|+|+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999996 333332 26999999971
Q ss_pred -------CCcEEEccCCCCCCCCCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEe
Q 022592 172 -------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 172 -------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e 225 (294)
++.|.+.|+.+.+++.++||+|+|..+|+|++ ...++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35678889988887788999999999999974 3479999999999999999964
No 70
>PRK14968 putative methyltransferase; Provisional
Probab=99.27 E-value=2.2e-10 Score=96.78 Aligned_cols=116 Identities=22% Similarity=0.352 Sum_probs=84.8
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC---------------C--CcEEEccCCCCCCCCCCcc
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------D--PSVIACDMSNTPLNSSSVD 191 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------------~--~~~~~~d~~~lp~~~~~fD 191 (294)
++..+... ++.+|||+|||+|.++..++ ..++|+|+|+. + +.++.+|+.+ ++.+.+||
T Consensus 15 l~~~~~~~-~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d 92 (188)
T PRK14968 15 LAENAVDK-KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFD 92 (188)
T ss_pred HHHhhhcc-CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCce
Confidence 44444333 56789999999999988886 48999999971 1 6677888765 33455899
Q ss_pred EEEEcccccCC----------------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592 192 VAVFCLSLMGI----------------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL 249 (294)
Q Consensus 192 ~Vi~~~~l~~~----------------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~ 249 (294)
+|+++..+.+. ....+++++.++|+|||.+++.... . ...+.+..++.++
T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~--~------~~~~~l~~~~~~~ 164 (188)
T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS--L------TGEDEVLEYLEKL 164 (188)
T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc--c------CCHHHHHHHHHHC
Confidence 99987654321 1356899999999999998876311 1 2347889999999
Q ss_pred CCeEEEEe
Q 022592 250 GFAPVSKD 257 (294)
Q Consensus 250 Gf~~~~~~ 257 (294)
||.+....
T Consensus 165 g~~~~~~~ 172 (188)
T PRK14968 165 GFEAEVVA 172 (188)
T ss_pred CCeeeeee
Confidence 99887643
No 71
>PLN03075 nicotianamine synthase; Provisional
Probab=99.27 E-value=1.1e-10 Score=105.11 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=88.6
Q ss_pred HHHhhccCCCCEEEEEcCcccHHHHHhc-------cceEEEeccC-----------------CCCcEEEccCCCCCCCCC
Q 022592 133 VKWLKDHSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS-----------------NDPSVIACDMSNTPLNSS 188 (294)
Q Consensus 133 ~~~l~~~~~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~-----------------~~~~~~~~d~~~lp~~~~ 188 (294)
+..+... +..+|||||||.|.++..+. ..++|+|+++ +++.|..+|+.+++...+
T Consensus 116 L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 116 LSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLK 194 (296)
T ss_pred HHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccC
Confidence 3333333 45699999999885533321 3699999997 358899999987653356
Q ss_pred CccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe--ccCCeE
Q 022592 189 SVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD--FSNKMF 263 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~f 263 (294)
.||+|++. +++++ ++.++++.+.+.|+|||.+++..-...-.-..+..++++.. ||++..+. .....-
T Consensus 195 ~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~------gf~~~~~~~P~~~v~N 267 (296)
T PLN03075 195 EYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR------GFEVLSVFHPTDEVIN 267 (296)
T ss_pred CcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC------CeEEEEEECCCCCcee
Confidence 79999999 77764 78899999999999999999964211110001112233322 99987733 233456
Q ss_pred EEEEEEECC
Q 022592 264 IMFYFKKKE 272 (294)
Q Consensus 264 ~~i~~~k~~ 272 (294)
+++++||..
T Consensus 268 svi~~r~~~ 276 (296)
T PLN03075 268 SVIIARKPG 276 (296)
T ss_pred eEEEEEeec
Confidence 777778864
No 72
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.26 E-value=3.4e-11 Score=107.12 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=81.9
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccCCCCcEEE-------c-cCCCCCCCCCCccEEEEcccccCCCHHHHH
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSVIA-------C-DMSNTPLNSSSVDVAVFCLSLMGINFPNYL 208 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~~~~~~-------~-d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l 208 (294)
++.+|||+|||+|.++..++ ..|+|+|+++..+.... . +...++..+.+||+|+++... .....++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~--~~~~~l~ 196 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILA--NPLLELA 196 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcH--HHHHHHH
Confidence 56799999999999887765 25999999983221100 0 111122222379999986432 2345788
Q ss_pred HHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592 209 QEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKK 270 (294)
Q Consensus 209 ~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k 270 (294)
.++.++|+|||.++++.+.. ...+.+...+++.||.+....... .+..+.++|
T Consensus 197 ~~~~~~LkpgG~lilsgi~~--------~~~~~v~~~l~~~Gf~~~~~~~~~-~W~~~~~~~ 249 (250)
T PRK00517 197 PDLARLLKPGGRLILSGILE--------EQADEVLEAYEEAGFTLDEVLERG-EWVALVGKK 249 (250)
T ss_pred HHHHHhcCCCcEEEEEECcH--------hhHHHHHHHHHHCCCEEEEEEEeC-CEEEEEEEe
Confidence 99999999999999986532 134788899999999998866544 455555554
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.26 E-value=1.4e-11 Score=105.33 Aligned_cols=107 Identities=16% Similarity=0.256 Sum_probs=79.8
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCC---CCCCCccEEEEcc
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP---LNSSSVDVAVFCL 197 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp---~~~~~fD~Vi~~~ 197 (294)
...+|||||||+|.++..++ ..|+|+|++. .++.++.+|+..++ ++++++|.|++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 34589999999999998887 3799999987 36788999987643 4567899999887
Q ss_pred cccCCC---------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC-CeEEE
Q 022592 198 SLMGIN---------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG-FAPVS 255 (294)
Q Consensus 198 ~l~~~~---------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~ 255 (294)
...|.. ...++.++.++|+|||.|++..-... ..+.+.+.+...| |+...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~--------~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP--------LFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH--------HHHHHHHHHHhCCCeEecc
Confidence 655421 25799999999999999988642221 1245566676666 76654
No 74
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.6e-11 Score=106.88 Aligned_cols=118 Identities=22% Similarity=0.320 Sum_probs=86.0
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC------------CCCc----EEEccCCCCCCCCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS------------NDPS----VIACDMSNTPLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~------------~~~~----~~~~d~~~lp~~~~~fD~Vi~~~~l~ 200 (294)
++.+|||+|||+|.++...+ ..|+|+|+.+ +.+. ....+....+ ..+.||+|+++- |-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANI-LA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANI-LA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehh-hH
Confidence 67799999999999998876 4799999988 2333 1122222222 235899999873 21
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKK 270 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k 270 (294)
--...+...+.+.|+|||+++++.+.... .+.+.+.++++||.++..... .-+..+.++|
T Consensus 240 -~vl~~La~~~~~~lkpgg~lIlSGIl~~q--------~~~V~~a~~~~gf~v~~~~~~-~eW~~i~~kr 299 (300)
T COG2264 240 -EVLVELAPDIKRLLKPGGRLILSGILEDQ--------AESVAEAYEQAGFEVVEVLER-EEWVAIVGKR 299 (300)
T ss_pred -HHHHHHHHHHHHHcCCCceEEEEeehHhH--------HHHHHHHHHhCCCeEeEEEec-CCEEEEEEEc
Confidence 12347788999999999999999765433 377889999999999987665 5677777765
No 75
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.25 E-value=8.1e-11 Score=99.96 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=81.9
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD 191 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD 191 (294)
++..+... ++.+|||||||+|.++..++ .+|+++|+++ .++.++.+|+. .++ .++||
T Consensus 23 ~~~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D 99 (187)
T PRK08287 23 ALSKLELH-RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKAD 99 (187)
T ss_pred HHHhcCCC-CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCC
Confidence 33444433 66799999999999988775 3799999997 24566777764 233 35799
Q ss_pred EEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 192 VAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 192 ~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
+|++..... ....++..+.++|+|||.+++..+. ..+..++..++++.||..+.
T Consensus 100 ~v~~~~~~~--~~~~~l~~~~~~Lk~gG~lv~~~~~--------~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 100 AIFIGGSGG--NLTAIIDWSLAHLHPGGRLVLTFIL--------LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred EEEECCCcc--CHHHHHHHHHHhcCCCeEEEEEEec--------HhhHHHHHHHHHHCCCCcce
Confidence 999876543 4567899999999999999886432 12447888999999997655
No 76
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.22 E-value=1.6e-10 Score=108.09 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=91.5
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC------------------CCcEEEccCCCCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------------DPSVIACDMSNTPLN 186 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~------------------~~~~~~~d~~~lp~~ 186 (294)
+.+++.+... ...+|||+|||+|.++..++ .+|+++|+|+. +++++..|+... ++
T Consensus 218 rllL~~lp~~-~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 218 RFFMQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHhCCcc-cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 4466776544 34599999999999998876 37999999961 346666776442 23
Q ss_pred CCCccEEEEcccccCC---C---HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccC
Q 022592 187 SSSVDVAVFCLSLMGI---N---FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSN 260 (294)
Q Consensus 187 ~~~fD~Vi~~~~l~~~---~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 260 (294)
.++||+|+++..+|.. . ...++..+.++|+|||.|+++. ..+ ..+...|++ .|..++....+
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~--nr~---------l~y~~~L~~-~fg~~~~va~~ 363 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA--NRH---------LDYFHKLKK-IFGNCTTIATN 363 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE--ecC---------cCHHHHHHH-HcCCceEEccC
Confidence 4689999998887742 1 3478999999999999999973 222 123344444 35556666778
Q ss_pred CeEEEEEEEECC
Q 022592 261 KMFIMFYFKKKE 272 (294)
Q Consensus 261 ~~f~~i~~~k~~ 272 (294)
..|.++.++|..
T Consensus 364 ~kf~vl~a~k~~ 375 (378)
T PRK15001 364 NKFVVLKAVKLG 375 (378)
T ss_pred CCEEEEEEEeCC
Confidence 889999988843
No 77
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.22 E-value=3.3e-11 Score=103.88 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=62.5
Q ss_pred EEEEEcCcccHHHHHhc---cceEEEeccCC---------CCcE-------EEccCCCCCCCCCCccEEEEcccccCCCH
Q 022592 144 VIADFGCGDARLAKSVK---NKVFSFDLVSN---------DPSV-------IACDMSNTPLNSSSVDVAVFCLSLMGINF 204 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------~~~~-------~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~ 204 (294)
.++|+|||+|..++.++ .+|+|+|+|+. ++.+ ...++..+--.++++|+|++...+||+|.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdl 115 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDL 115 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhch
Confidence 79999999997777776 58999999982 2222 22223333333899999999999999999
Q ss_pred HHHHHHHHHhcCcCcEEEEE
Q 022592 205 PNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~ 224 (294)
..+.++++|+||+.|-++.+
T Consensus 116 e~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 116 ERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHHHHHHHHHcCCCCCEEEE
Confidence 99999999999997744444
No 78
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.21 E-value=3.2e-10 Score=103.56 Aligned_cols=83 Identities=17% Similarity=0.273 Sum_probs=59.9
Q ss_pred CCCEEEEEcCcccHHHHHhc------cceEEEeccCC--------------C--CcEEEccCCC-CCCCCCC----ccEE
Q 022592 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSN--------------D--PSVIACDMSN-TPLNSSS----VDVA 193 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~--------------~--~~~~~~d~~~-lp~~~~~----fD~V 193 (294)
++..|||+|||+|..+..++ ..|+++|+|+. . +.++++|+.+ ++++... ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 45689999999999877664 36999999982 2 3457889876 4443332 2344
Q ss_pred EEcccccCCC---HHHHHHHHHHhcCcCcEEEE
Q 022592 194 VFCLSLMGIN---FPNYLQEAQRVLKPSGWLLI 223 (294)
Q Consensus 194 i~~~~l~~~~---~~~~l~el~r~LkpgG~l~i 223 (294)
++..++++.+ ...++++++++|+|||.|++
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4445666654 45789999999999999996
No 79
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.21 E-value=1.1e-10 Score=91.50 Aligned_cols=90 Identities=17% Similarity=0.242 Sum_probs=67.5
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCC-CCCCCCCc
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSV 190 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~-lp~~~~~f 190 (294)
++..+... ++.+|||+|||+|.++..++ ..|+++|+++ .++.++.+|+.. ++....+|
T Consensus 11 ~~~~~~~~-~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLRLR-PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcCCC-CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 44444332 45699999999999988776 2799999987 245677777654 33334689
Q ss_pred cEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 191 DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 191 D~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
|+|++..... ....+++++.++|+|||.+++.
T Consensus 90 D~v~~~~~~~--~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGG--LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcch--hHHHHHHHHHHHcCCCCEEEEE
Confidence 9999876543 3468999999999999999985
No 80
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=4.1e-11 Score=99.41 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=70.8
Q ss_pred CCcEEEccCCCCCCCCCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCC---------------C---
Q 022592 172 DPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFD---------------P--- 232 (294)
Q Consensus 172 ~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~---------------~--- 232 (294)
++.++++|+.++|+++++||+|++.+++++ .++..++++++|+|||||.+++.++..... .
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVA 106 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhh
Confidence 578999999999999999999999999998 589999999999999999999998653210 0
Q ss_pred ----C-----------CCCCCHHHHHHHHHHCCCeEEEE
Q 022592 233 ----N-----------TGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 233 ----~-----------~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
. ....+.+++.++|+++||+.+..
T Consensus 107 ~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~ 145 (160)
T PLN02232 107 TVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH 145 (160)
T ss_pred HHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence 0 01148889999999999987763
No 81
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.20 E-value=3.8e-10 Score=95.93 Aligned_cols=114 Identities=20% Similarity=0.295 Sum_probs=79.2
Q ss_pred HHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEccCCCCC--------CCCCCccEEE
Q 022592 133 VKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVAV 194 (294)
Q Consensus 133 ~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~d~~~lp--------~~~~~fD~Vi 194 (294)
.+.+....++.+|||+|||+|.++..++ .+++++|+++ .++.++.+|+.+.+ ++.++||+|+
T Consensus 24 ~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 24 NQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred HHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 3333333477899999999999887664 2599999998 36778888887643 4566899999
Q ss_pred Eccccc----C-CC-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 195 FCLSLM----G-IN-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 195 ~~~~l~----~-~~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
+..+.+ + .+ ...++..+.++|+|||.+++..+.. ....++...++.. |..+.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~--------~~~~~~l~~l~~~-~~~~~ 167 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG--------EEIDEYLNELRKL-FEKVK 167 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC--------ccHHHHHHHHHhh-hceEE
Confidence 865422 1 11 3678999999999999999853221 2335666666653 64443
No 82
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=8.7e-11 Score=101.37 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=68.4
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNS 187 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~ 187 (294)
..+++.+... ++.+|||||||+|..+..++ .+|+++|+++ .++.++.+|+.......
T Consensus 62 ~~~~~~l~~~-~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 62 AMMCELIEPR-PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHhcCCC-CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 4455555433 66799999999999887664 3799999997 13678888987754456
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
.+||+|++..++++.. .++.++|+|||+|++.
T Consensus 141 ~~fD~Ii~~~~~~~~~-----~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP-----SALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh-----HHHHHhcCcCcEEEEE
Confidence 7899999998876542 4788999999999885
No 83
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.18 E-value=1.9e-10 Score=104.14 Aligned_cols=125 Identities=21% Similarity=0.328 Sum_probs=84.7
Q ss_pred HHHHhhcc-CCCCEEEEEcCcccHHHHHhc----cceEEEeccCC------------C--CcEEEccCCCCCCCCCCccE
Q 022592 132 IVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN------------D--PSVIACDMSNTPLNSSSVDV 192 (294)
Q Consensus 132 ~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~------------~--~~~~~~d~~~lp~~~~~fD~ 192 (294)
.++.|... .++.+|||+|||+|.++...+ ..|+|+|+.+. + ..+......+ ...+.||+
T Consensus 151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~~~~~~dl 228 (295)
T PF06325_consen 151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--LVEGKFDL 228 (295)
T ss_dssp HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--TCCS-EEE
T ss_pred HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--cccccCCE
Confidence 34444432 356799999999999988775 48999999981 1 1333322222 23488999
Q ss_pred EEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEE
Q 022592 193 AVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKK 270 (294)
Q Consensus 193 Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k 270 (294)
|+++-.. .-....+..+.++|+|||.|+++.+...- .+.+.+.+++ ||.+...... ..|..+.++|
T Consensus 229 vvANI~~--~vL~~l~~~~~~~l~~~G~lIlSGIl~~~--------~~~v~~a~~~-g~~~~~~~~~-~~W~~l~~~K 294 (295)
T PF06325_consen 229 VVANILA--DVLLELAPDIASLLKPGGYLILSGILEEQ--------EDEVIEAYKQ-GFELVEEREE-GEWVALVFKK 294 (295)
T ss_dssp EEEES-H--HHHHHHHHHCHHHEEEEEEEEEEEEEGGG--------HHHHHHHHHT-TEEEEEEEEE-TTEEEEEEEE
T ss_pred EEECCCH--HHHHHHHHHHHHhhCCCCEEEEccccHHH--------HHHHHHHHHC-CCEEEEEEEE-CCEEEEEEEe
Confidence 9987432 12346677788999999999999765433 3788888977 9999887654 4566666665
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=99.18 E-value=5.2e-10 Score=97.74 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=75.8
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccCC--------------CCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI 202 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~--------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~ 202 (294)
++.+|||+|||+|.++..++ .+++++|+++. ++.++.+|+... +++++||+|+++..+...
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCCC
Confidence 56799999999999988775 27999999971 345677787653 456789999997543321
Q ss_pred -C---------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 203 -N---------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 203 -~---------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
. ...++.++.++|+|||.++++.... ....++...++..||.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL--------SGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--------cCHHHHHHHHHHCCCCeEE
Confidence 1 3467888999999999999853211 1335666777777776544
No 85
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.18 E-value=7.2e-10 Score=96.60 Aligned_cols=139 Identities=15% Similarity=0.086 Sum_probs=98.5
Q ss_pred hHHhhhccCCCcHH-HHHHHHhhcc--CCCCEEEEEcCcccHHHHHhcc---ceEEEeccC-------------------
Q 022592 116 GYQEQMSHWPELPV-NIIVKWLKDH--SPSLVIADFGCGDARLAKSVKN---KVFSFDLVS------------------- 170 (294)
Q Consensus 116 ~~~~~~~~~~~~~~-~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~------------------- 170 (294)
.|......|..... ..+.+++... .++.+||+.|||.|..+.+|+. .|+|+|+|+
T Consensus 15 rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~ 94 (226)
T PRK13256 15 RWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHG 94 (226)
T ss_pred HHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecc
Confidence 34444566744322 3344555433 2457999999999999999983 899999997
Q ss_pred --------CCCcEEEccCCCCCCC---CCCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCC
Q 022592 171 --------NDPSVIACDMSNTPLN---SSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGG 236 (294)
Q Consensus 171 --------~~~~~~~~d~~~lp~~---~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~ 236 (294)
.++.+.++|+.+++.. .+.||+|+-..+|.+. .+.+.++.+.++|+|||.++++.+.-......+.
T Consensus 95 ~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPP 174 (226)
T PRK13256 95 NDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPP 174 (226)
T ss_pred cccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCC
Confidence 1567889999988642 2679999999999885 3568999999999999999998764322222222
Q ss_pred --CCHHHHHHHHHHCCCeEEE
Q 022592 237 --ADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 237 --~~~~~~~~~l~~~Gf~~~~ 255 (294)
.+.+++..++.. +|.+..
T Consensus 175 f~v~~~e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 175 YSVTQAELIKNFSA-KIKFEL 194 (226)
T ss_pred CcCCHHHHHHhccC-CceEEE
Confidence 467888888764 455544
No 86
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.17 E-value=1.9e-10 Score=106.34 Aligned_cols=107 Identities=23% Similarity=0.200 Sum_probs=83.1
Q ss_pred cCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592 139 HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 139 ~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~ 200 (294)
..++..|||+|||+|.++..++ ..++|+|+++ .++.+..+|+.++|+++++||+|++...+.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 3467799999999999877664 5899999987 235788999999998888999999975432
Q ss_pred C------C---C-HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 201 G------I---N-FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 201 ~------~---~-~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
. . + ...++.++.++|+|||++++.... ...+..+++++|| ++...
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~-----------~~~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT-----------RIDLESLAEDAFR-VVKRF 314 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC-----------CCCHHHHHhhcCc-chhee
Confidence 1 1 1 468999999999999999886422 1355677999999 76633
No 87
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.17 E-value=1.5e-10 Score=100.68 Aligned_cols=141 Identities=18% Similarity=0.215 Sum_probs=93.4
Q ss_pred hHHhhhccCCCcH-HHHHHHHhhc--cCCCCEEEEEcCcccHHHHHhcc---ceEEEeccC-------------------
Q 022592 116 GYQEQMSHWPELP-VNIIVKWLKD--HSPSLVIADFGCGDARLAKSVKN---KVFSFDLVS------------------- 170 (294)
Q Consensus 116 ~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~------------------- 170 (294)
.|......|.... -..+.+++.. ..++.+||..|||.|..+..|+. .|+|+|+|+
T Consensus 9 ~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~ 88 (218)
T PF05724_consen 9 RWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSV 88 (218)
T ss_dssp HHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTC
T ss_pred HHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccc
Confidence 3444456676532 2233444443 23566999999999999999983 899999997
Q ss_pred --------CCCcEEEccCCCCCCCC-CCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC-CCC-
Q 022592 171 --------NDPSVIACDMSNTPLNS-SSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN-TGG- 236 (294)
Q Consensus 171 --------~~~~~~~~d~~~lp~~~-~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~-~~~- 236 (294)
.++.+.++|+..++... ++||+|+=...|... .+.+..+.+.++|+|||.++++.+.-..... .+.
T Consensus 89 ~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf 168 (218)
T PF05724_consen 89 GGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPF 168 (218)
T ss_dssp TTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-
T ss_pred cceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCC
Confidence 13567899999877543 579999988888764 5679999999999999995544333221111 122
Q ss_pred -CCHHHHHHHHHHCCCeEEEEe
Q 022592 237 -ADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 237 -~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
.+.+++.+++. .+|++....
T Consensus 169 ~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 169 SVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp ---HHHHHHHHT-TTEEEEEEE
T ss_pred CCCHHHHHHHhc-CCcEEEEEe
Confidence 57788999888 789887743
No 88
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.17 E-value=1.8e-10 Score=96.51 Aligned_cols=94 Identities=22% Similarity=0.444 Sum_probs=71.8
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhcc-----ceEEEeccC---------------CCCcEEEccCCCCCCCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-----KVFSFDLVS---------------NDPSVIACDMSNTPLNSSS 189 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~ 189 (294)
..+++.+... +..+|||+|||+|.++..++. .|+++|+++ .++.++.+|+... +++++
T Consensus 21 ~lL~~~l~~~-~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~ 98 (170)
T PF05175_consen 21 RLLLDNLPKH-KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGK 98 (170)
T ss_dssp HHHHHHHHHH-TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTC
T ss_pred HHHHHHHhhc-cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccc
Confidence 4466667665 567999999999999988872 699999998 2367888888653 23688
Q ss_pred ccEEEEcccccCC-C-----HHHHHHHHHHhcCcCcEEEEEe
Q 022592 190 VDVAVFCLSLMGI-N-----FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 190 fD~Vi~~~~l~~~-~-----~~~~l~el~r~LkpgG~l~i~e 225 (294)
||+|+++..++.. + ...++.++.++|+|||.|+++.
T Consensus 99 fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 99 FDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp EEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 9999999887753 2 4688999999999999998753
No 89
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.17 E-value=5.6e-10 Score=92.42 Aligned_cols=104 Identities=19% Similarity=0.328 Sum_probs=84.7
Q ss_pred CEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
.+|||+|||+|.++..|+ ...+|+|.|+ +.+.|.+.|+....+..++||+|.--.++-.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 389999999999999998 3589999998 2388999999987777888999987666543
Q ss_pred C----C-----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 202 I----N-----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 202 ~----~-----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
. + +...+..+.++|+|||+++|...+ ++.+++.+.++..||....
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN---------~T~dELv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN---------FTKDELVEEFENFNFEYLS 202 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecC---------ccHHHHHHHHhcCCeEEEE
Confidence 1 1 235678889999999999997644 4679999999999998766
No 90
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.16 E-value=3.7e-10 Score=99.86 Aligned_cols=105 Identities=24% Similarity=0.407 Sum_probs=80.0
Q ss_pred CCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
+.+|||+|||+|.++..++ ..++|+|+++ .++.++.+|+.. ++++++||+|+++..+..
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 4589999999999988876 2789999987 247788889876 456788999998654331
Q ss_pred C---------------------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592 202 I---------------------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254 (294)
Q Consensus 202 ~---------------------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 254 (294)
. ....++..+.++|+|||.+++.. . ....+.+.++++++||..+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~--------~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-G--------YDQGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-C--------ccHHHHHHHHHHhCCCCce
Confidence 0 02367889999999999998842 1 1245788999999999876
Q ss_pred EE
Q 022592 255 SK 256 (294)
Q Consensus 255 ~~ 256 (294)
..
T Consensus 238 ~~ 239 (251)
T TIGR03534 238 ET 239 (251)
T ss_pred EE
Confidence 64
No 91
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.15 E-value=5.9e-11 Score=100.72 Aligned_cols=127 Identities=15% Similarity=0.195 Sum_probs=98.1
Q ss_pred cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCcc
Q 022592 127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVD 191 (294)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD 191 (294)
.+...++..+... ....|.|+|||+|..+..|+ +.++|+|-|+ .++.|..+|+.+.. +....|
T Consensus 17 RPa~dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~d 94 (257)
T COG4106 17 RPARDLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTD 94 (257)
T ss_pred CcHHHHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccc
Confidence 3456677777766 44589999999999999887 4899999887 57889999998865 457799
Q ss_pred EEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCC----------------CCC--------CCCCCCHHHHHHHH
Q 022592 192 VAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSR----------------FDP--------NTGGADPNKFSKAV 246 (294)
Q Consensus 192 ~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~----------------~~~--------~~~~~~~~~~~~~l 246 (294)
+++++.+|+| .+-...+..+...|.|||+|.+--..+. |.. ...-.++..+.++|
T Consensus 95 llfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 95 LLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 9999999999 4888999999999999999998521110 110 01115778888888
Q ss_pred HHCCCeEEE
Q 022592 247 CDLGFAPVS 255 (294)
Q Consensus 247 ~~~Gf~~~~ 255 (294)
...+.++..
T Consensus 175 a~~~~rvDi 183 (257)
T COG4106 175 APLACRVDI 183 (257)
T ss_pred Ccccceeee
Confidence 888776654
No 92
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=2.4e-10 Score=99.19 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=69.3
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS 188 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~ 188 (294)
..+++.+... ++.+|||||||+|.++..++ .+|+++|+++ .++.++.+|....+.+.+
T Consensus 66 ~~~~~~l~~~-~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLDLK-EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcCCC-CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 4455555443 67899999999999887665 3899999996 367889999877665678
Q ss_pred CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
+||+|++..++.+. ...+.+.|+|||.|++.
T Consensus 145 ~fD~I~~~~~~~~~-----~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAAGPDI-----PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCEEEECCCcccc-----hHHHHHhhCCCcEEEEE
Confidence 89999988765432 34677899999999885
No 93
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.14 E-value=8.4e-10 Score=96.87 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=99.0
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCC--CCCC
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSS 188 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp--~~~~ 188 (294)
++......+...+|||+|||+|.++..++ ..++|||+.+ +++++++.|+.++. ....
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~ 114 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA 114 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence 33333333346799999999999999997 3789999987 57889999998754 3345
Q ss_pred CccEEEEcccccCC-------------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592 189 SVDVAVFCLSLMGI-------------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL 249 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~-------------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~ 249 (294)
+||+|+|+.-++-. +...+++.+..+|||||.+.++--. -...++..++.+.
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------erl~ei~~~l~~~ 185 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------ERLAEIIELLKSY 185 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---------HHHHHHHHHHHhc
Confidence 79999998776531 3568899999999999999997421 1346789999999
Q ss_pred CCeEEEEec------cCCeEEEEEEEECC
Q 022592 250 GFAPVSKDF------SNKMFIMFYFKKKE 272 (294)
Q Consensus 250 Gf~~~~~~~------~~~~f~~i~~~k~~ 272 (294)
+|....+.+ ......++.++|..
T Consensus 186 ~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 186 NLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred CCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 998877433 35567777777764
No 94
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.13 E-value=6.9e-10 Score=95.19 Aligned_cols=105 Identities=17% Similarity=0.271 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-CCCCCCccEEEEc
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-PLNSSSVDVAVFC 196 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p~~~~~fD~Vi~~ 196 (294)
.++.+|||+|||+|.++..++ .+|+++|+++ .++.++.+|+.+. +...+.||+|++.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 367799999999999887653 3799999986 2456777787653 3334679999985
Q ss_pred ccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592 197 LSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254 (294)
Q Consensus 197 ~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 254 (294)
.. ..++..++.++.++|+|||.+++.... . .+..+....|++.||...
T Consensus 119 ~~--~~~~~~~l~~~~~~LkpgG~lv~~~~~--~------~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 119 GG--SEKLKEIISASWEIIKKGGRIVIDAIL--L------ETVNNALSALENIGFNLE 166 (198)
T ss_pred CC--cccHHHHHHHHHHHcCCCcEEEEEeec--H------HHHHHHHHHHHHcCCCeE
Confidence 42 246788999999999999999874321 1 134677888999998543
No 95
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.13 E-value=3.6e-10 Score=102.54 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=75.1
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccCC----------------CCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN----------------DPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~----------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~ 200 (294)
++.+|||+|||+|.++..++ ..|+|+|+++. .+.+...+. .+..+++||+|+++....
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecCHH
Confidence 56799999999999887765 37999999972 223333332 233457899999875432
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
....++.++.++|+|||.++++.+... ..+++.+.+++. |.++...
T Consensus 237 --~l~~ll~~~~~~LkpgG~li~sgi~~~--------~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 237 --VIKELYPQFSRLVKPGGWLILSGILET--------QAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred --HHHHHHHHHHHHcCCCcEEEEEeCcHh--------HHHHHHHHHHcc-CceeeEe
Confidence 345788999999999999999875321 346788888776 8777643
No 96
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.11 E-value=4.6e-10 Score=97.53 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=68.5
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---c---ceEEEeccC---------------CCCcEEEccCCCCCCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---N---KVFSFDLVS---------------NDPSVIACDMSNTPLNSS 188 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~---~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~ 188 (294)
..+++.+... ++.+|||||||+|.++..++ . .|+++|+++ .++.++.+|+........
T Consensus 67 ~~~~~~l~~~-~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLELK-PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhCCC-CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 4456666544 67899999999999988776 2 399999987 367888899876544456
Q ss_pred CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
+||+|++.....+ ....+.+.|+|||+|++.
T Consensus 146 ~fD~Ii~~~~~~~-----~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPK-----IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCccc-----ccHHHHHhcCcCcEEEEE
Confidence 8999998766543 345678899999999885
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.10 E-value=9.5e-10 Score=101.97 Aligned_cols=128 Identities=18% Similarity=0.230 Sum_probs=88.9
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------C--CCcEEEccCCCCCCCCCCc
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------N--DPSVIACDMSNTPLNSSSV 190 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~--~~~~~~~d~~~lp~~~~~f 190 (294)
..+++.+... ...+|||+|||+|.++..++ ..|+++|+++ . ...++..|+... ..+.|
T Consensus 186 ~lLl~~l~~~-~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~f 262 (342)
T PRK09489 186 QLLLSTLTPH-TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRF 262 (342)
T ss_pred HHHHHhcccc-CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCc
Confidence 4556666544 34589999999999988776 2799999996 1 234666676542 25789
Q ss_pred cEEEEcccccC-C-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEE
Q 022592 191 DVAVFCLSLMG-I-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFI 264 (294)
Q Consensus 191 D~Vi~~~~l~~-~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~ 264 (294)
|+|+++..+|+ . ....++.++.++|+|||.|+++. ..+.+ .+ ..+++. |..+++-..+..|.
T Consensus 263 DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa--n~~l~------y~---~~l~~~-Fg~~~~la~~~~f~ 330 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA--NAFLP------YP---DLLDET-FGSHEVLAQTGRFK 330 (342)
T ss_pred cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE--eCCCC------hH---HHHHHH-cCCeEEEEeCCCEE
Confidence 99999998886 1 34689999999999999999964 22221 12 223322 44455555677888
Q ss_pred EEEEEECC
Q 022592 265 MFYFKKKE 272 (294)
Q Consensus 265 ~i~~~k~~ 272 (294)
++.++|.+
T Consensus 331 v~~a~~~~ 338 (342)
T PRK09489 331 VYRAIMTR 338 (342)
T ss_pred EEEEEccC
Confidence 88887654
No 98
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.10 E-value=8.3e-11 Score=100.60 Aligned_cols=118 Identities=15% Similarity=0.257 Sum_probs=85.3
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccCCCC----------cEEEccCCC-CC-CCCCCccEEEEcccccCC-CH
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSNDP----------SVIACDMSN-TP-LNSSSVDVAVFCLSLMGI-NF 204 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~~~----------~~~~~d~~~-lp-~~~~~fD~Vi~~~~l~~~-~~ 204 (294)
+..++||+|||||..+..+. ...+|||+|.+.+ .+.++++.. ++ ...+.||+|++..||.+. +.
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L 204 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL 204 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch
Confidence 35689999999999887775 5899999998432 233334332 22 345789999999999986 88
Q ss_pred HHHHHHHHHhcCcCcEEEEEee--cCC--C--CCCCCC-CCHHHHHHHHHHCCCeEEEEec
Q 022592 205 PNYLQEAQRVLKPSGWLLIAEV--KSR--F--DPNTGG-ADPNKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~e~--~~~--~--~~~~~~-~~~~~~~~~l~~~Gf~~~~~~~ 258 (294)
..++..+...|+|||.|.++.- ..+ | .|...+ .+..-+..++...||+++....
T Consensus 205 e~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 205 EGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred hhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 9999999999999999999721 111 1 111111 2445678999999999988654
No 99
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.09 E-value=3.2e-09 Score=96.12 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=84.2
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL 199 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l 199 (294)
+..+|||+|||+|.++..++ ..|+|+|+|+ .++.++.+|+.. ++++++||+|+++...
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 34689999999999988886 2799999997 246788888754 2345689999986321
Q ss_pred c-------------CC-------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592 200 M-------------GI-------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253 (294)
Q Consensus 200 ~-------------~~-------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 253 (294)
. |. ....++..+.++|+|||++++ ++. .+.+.+..++.+.||.-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~-e~g---------~~~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV-EVG---------NSMEALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE-EEC---------cCHHHHHHHHHhCCCce
Confidence 1 10 024678899999999999886 332 23468889999999988
Q ss_pred EEEeccCCeEEEE
Q 022592 254 VSKDFSNKMFIMF 266 (294)
Q Consensus 254 ~~~~~~~~~f~~i 266 (294)
...+.....|+.+
T Consensus 270 ~~~~~~~~~~~~~ 282 (284)
T TIGR03533 270 LEFENGGDGVFLL 282 (284)
T ss_pred eeecCCCcEEEEE
Confidence 7766666655554
No 100
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.09 E-value=1.2e-09 Score=93.12 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=89.9
Q ss_pred EEEEEcCcccHHHHHhccceE-----EEeccC---------------CCC-cEEEccCCCCC--C------CCCCccEEE
Q 022592 144 VIADFGCGDARLAKSVKNKVF-----SFDLVS---------------NDP-SVIACDMSNTP--L------NSSSVDVAV 194 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~~~v~-----gvD~s~---------------~~~-~~~~~d~~~lp--~------~~~~fD~Vi 194 (294)
+|||||||||..+.+++...- -.|+.. +++ .-+..|+...+ . ..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999988874221 112221 111 12344554432 2 245899999
Q ss_pred EcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecC------------------CCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592 195 FCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKS------------------RFDPNTGGADPNKFSKAVCDLGFAP 253 (294)
Q Consensus 195 ~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~------------------~~~~~~~~~~~~~~~~~l~~~Gf~~ 253 (294)
+..++|... ...+++.+.++|+|||.|+++.... ..++..+..+.+++..+..++|+..
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL 187 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence 999999754 4588999999999999999984221 1233344468999999999999999
Q ss_pred EEEeccCCeEEEEEEEE
Q 022592 254 VSKDFSNKMFIMFYFKK 270 (294)
Q Consensus 254 ~~~~~~~~~f~~i~~~k 270 (294)
+........-.+++|+|
T Consensus 188 ~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 188 EEDIDMPANNLLLVFRK 204 (204)
T ss_pred CcccccCCCCeEEEEeC
Confidence 88777777777888875
No 101
>PHA03411 putative methyltransferase; Provisional
Probab=99.08 E-value=1.5e-09 Score=96.60 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=84.3
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC--
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN-- 203 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~-- 203 (294)
...+|||+|||+|.++..++ ..|+|+|+++ .++.++.+|+..... ..+||+|+++..+.+.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 34689999999999877663 3799999998 357789999987653 46899999988887621
Q ss_pred -------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 204 -------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 204 -------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
...++.....+|+|+|.+++.--...+ .....+.+++.++|+++||....
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~--y~~sl~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY--YDGTMKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc--ccccCCHHHHHHHHHhcCcEecC
Confidence 235667778899999977775211111 13346889999999999997644
No 102
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.07 E-value=7e-10 Score=103.56 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=74.1
Q ss_pred HHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCC--CCCCC
Q 022592 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSS 188 (294)
Q Consensus 131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~l--p~~~~ 188 (294)
.+++.+... .+..+||||||+|.++..++ ..++|+|++. .++.++.+|+..+ .++++
T Consensus 113 ~~~~~~~~~-~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFISKN-QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhcCC-CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 455555543 45689999999999999887 3799999986 4778899998654 57789
Q ss_pred CccEEEEcccccCC-C------HHHHHHHHHHhcCcCcEEEEEe
Q 022592 189 SVDVAVFCLSLMGI-N------FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~-~------~~~~l~el~r~LkpgG~l~i~e 225 (294)
++|.|++.+...|. . ...++.++.|+|+|||.+.+..
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999987665553 1 1589999999999999999963
No 103
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.06 E-value=4.1e-09 Score=95.45 Aligned_cols=103 Identities=20% Similarity=0.341 Sum_probs=74.3
Q ss_pred CEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccc---
Q 022592 143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS--- 198 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~--- 198 (294)
.+|||+|||+|.++..++ ..|+|+|+|+ .++.++.+|+.. +++..+||+|+++..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 589999999999988776 3799999998 137788888865 344458999998631
Q ss_pred ----------ccCC-------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH-HCCCeEE
Q 022592 199 ----------LMGI-------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC-DLGFAPV 254 (294)
Q Consensus 199 ----------l~~~-------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~~ 254 (294)
+.|. ....++..+.++|+|||++++ ++... ..+.+.+++. ..||..+
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~~--------q~~~~~~~~~~~~~~~~~ 265 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC-EIGNW--------QQKSLKELLRIKFTWYDV 265 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECcc--------HHHHHHHHHHhcCCCcee
Confidence 2221 134678899999999999877 33221 2357777777 4688654
Q ss_pred E
Q 022592 255 S 255 (294)
Q Consensus 255 ~ 255 (294)
.
T Consensus 266 ~ 266 (284)
T TIGR00536 266 E 266 (284)
T ss_pred E
Confidence 4
No 104
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.05 E-value=1.3e-09 Score=92.85 Aligned_cols=117 Identities=17% Similarity=0.260 Sum_probs=84.4
Q ss_pred HHHHHHhhccC-CCCEEEEEcCcccHHHHHhc---cceEEEeccCCC----------CcEEEccC-CCCCCCCCCccEEE
Q 022592 130 NIIVKWLKDHS-PSLVIADFGCGDARLAKSVK---NKVFSFDLVSND----------PSVIACDM-SNTPLNSSSVDVAV 194 (294)
Q Consensus 130 ~~~~~~l~~~~-~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~~----------~~~~~~d~-~~lp~~~~~fD~Vi 194 (294)
++.++.+.... ...-|||||||+|..+..+. ...+|+|+|+.. -.++.+|+ +.+||..++||.||
T Consensus 38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEE
Confidence 45566655432 24579999999999998887 367899999831 25778888 45999999999999
Q ss_pred EcccccCC--------CH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCe
Q 022592 195 FCLSLMGI--------NF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFA 252 (294)
Q Consensus 195 ~~~~l~~~--------~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 252 (294)
+..++.|. ++ ..|+..++.+|++|+..++-- .+... -..+-+......+||.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf-----Ypen~-~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF-----YPENE-AQIDMIMQQAMKAGFG 181 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe-----cccch-HHHHHHHHHHHhhccC
Confidence 99998872 22 367888999999999998842 22111 1334555666778874
No 105
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.05 E-value=4.6e-10 Score=96.22 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=97.9
Q ss_pred HHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhcc-----CCCCEEEEEcCcccHHHHHhc----cceEEEe
Q 022592 97 KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH-----SPSLVIADFGCGDARLAKSVK----NKVFSFD 167 (294)
Q Consensus 97 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~VLDiGcG~G~~~~~l~----~~v~gvD 167 (294)
..+.+||+..+..-+-+..+|..... -+......++..+... ....+.||.|||-|+.+..+. ..|-.+|
T Consensus 7 ~~a~~YW~~v~atvdGMLGG~~~is~-~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVE 85 (218)
T PF05891_consen 7 EKAKEYWENVPATVDGMLGGFGHISR-IDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVE 85 (218)
T ss_dssp HHHHHHHHTS-SSHHHHTTT-GGGHH-HHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEE
T ss_pred HHHHHHHcCCCCCccccccCCCCCCh-HHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEec
Confidence 45566777666666666656642211 0011123344444332 134589999999999998775 3666677
Q ss_pred ccCC--------------C-CcEEEccCCCCCCCCCCccEEEEcccccCC---CHHHHHHHHHHhcCcCcEEEEEeecC-
Q 022592 168 LVSN--------------D-PSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSGWLLIAEVKS- 228 (294)
Q Consensus 168 ~s~~--------------~-~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~- 228 (294)
+++. . ..+.++.+.+...+...||+|++.+++.|. +...+|..+...|+|||.++|=|=..
T Consensus 86 p~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~ 165 (218)
T PF05891_consen 86 PVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS 165 (218)
T ss_dssp S-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred cCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence 6651 1 245666666655445789999999999994 67799999999999999999965221
Q ss_pred ----CCCCCCCC--CCHHHHHHHHHHCCCeEEEEec
Q 022592 229 ----RFDPNTGG--ADPNKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 229 ----~~~~~~~~--~~~~~~~~~l~~~Gf~~~~~~~ 258 (294)
.++..+.. .+.+.+..++++||++++....
T Consensus 166 ~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 166 SGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp SSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred CCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 12222222 4678999999999999998544
No 106
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.03 E-value=8.4e-09 Score=97.06 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=84.1
Q ss_pred CCcHHHHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------CCCcEEEccCCCCC
Q 022592 125 PELPVNIIVKWLKDH-SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP 184 (294)
Q Consensus 125 ~~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------~~~~~~~~d~~~lp 184 (294)
|+...+.+++.+... .++.+|||+|||+|.++..++ ..|+|+|+|+ .++.++.+|+....
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence 333344455544322 245689999999999988765 3799999998 24678889986543
Q ss_pred CC-CCCccEEEEcccccCC----------------------C----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCC
Q 022592 185 LN-SSSVDVAVFCLSLMGI----------------------N----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGA 237 (294)
Q Consensus 185 ~~-~~~fD~Vi~~~~l~~~----------------------~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~ 237 (294)
++ .++||+|+++...... + ...++..+.+.|+|||.+++ ++.. .
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~--------~ 384 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF--------D 384 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------c
Confidence 32 4579999997643210 1 23667777889999999876 3321 1
Q ss_pred CHHHHHHHHHHCCCeEEE
Q 022592 238 DPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 238 ~~~~~~~~l~~~Gf~~~~ 255 (294)
..+.+.+++++.||..+.
T Consensus 385 Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 385 QGAAVRGVLAENGFSGVE 402 (423)
T ss_pred HHHHHHHHHHHCCCcEEE
Confidence 347899999999997665
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=5.7e-09 Score=93.67 Aligned_cols=106 Identities=23% Similarity=0.384 Sum_probs=77.9
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~ 200 (294)
++.+|||+|||+|.++..++ ..++|+|+++ .++.++.+|+... ++.++||+|+++....
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCcC
Confidence 55689999999999888776 3799999997 2567888887542 3357899999864332
Q ss_pred CC---------------------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592 201 GI---------------------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253 (294)
Q Consensus 201 ~~---------------------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 253 (294)
.. ....++.++.++|+|||.+++. ... ...+.+..++.+.||..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~g~--------~~~~~~~~~l~~~gf~~ 257 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE-IGY--------DQGEAVRALLAAAGFAD 257 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE-ECc--------hHHHHHHHHHHhCCCce
Confidence 10 1246788888999999999883 211 13467889999999976
Q ss_pred EEE
Q 022592 254 VSK 256 (294)
Q Consensus 254 ~~~ 256 (294)
+..
T Consensus 258 v~~ 260 (275)
T PRK09328 258 VET 260 (275)
T ss_pred eEE
Confidence 553
No 108
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.02 E-value=2.6e-10 Score=88.92 Aligned_cols=84 Identities=25% Similarity=0.378 Sum_probs=67.3
Q ss_pred CCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCC--CCCCCccEEEEcccc
Q 022592 142 SLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSL 199 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~~l 199 (294)
+.+|||+|||+|.++..++ ..++|+|+++ .++.++++|+.... +++++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 3589999999999888775 5899999998 35789999998765 778999999998887
Q ss_pred cCC---------CHHHHHHHHHHhcCcCcEEEEEe
Q 022592 200 MGI---------NFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 200 ~~~---------~~~~~l~el~r~LkpgG~l~i~e 225 (294)
... ....+++++.++|+|||.++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 641 13588999999999999999863
No 109
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.01 E-value=7.4e-09 Score=92.14 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=77.7
Q ss_pred CCEEEEEcCcccHHHHHhc-----cceEEEeccC------------CCCcEEEccCCCC-CC-CCCCccEEEEcccccC-
Q 022592 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSNT-PL-NSSSVDVAVFCLSLMG- 201 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~~~~~~~~d~~~l-p~-~~~~fD~Vi~~~~l~~- 201 (294)
..+|||+|||+|.++..++ ..|+|+|+++ .+..++.+|+.+. +- ..+.||+|+++.-...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 3589999999999988775 2799999998 2356888888652 21 1357999998764321
Q ss_pred -----C-----------------C----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 202 -----I-----------------N----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 202 -----~-----------------~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
. + ...++..+.++|+|||++++.- ... ....+..++++.||....
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~-~~~--------~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET-SER--------QAPLAVEAFARAGLIARV 237 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-Ccc--------hHHHHHHHHHHCCCCcee
Confidence 0 1 2367778889999999999753 211 236788999999997766
Q ss_pred Eec
Q 022592 256 KDF 258 (294)
Q Consensus 256 ~~~ 258 (294)
...
T Consensus 238 ~~~ 240 (251)
T TIGR03704 238 ASS 240 (251)
T ss_pred eEc
Confidence 544
No 110
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.01 E-value=6.6e-09 Score=86.99 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=85.9
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCcc
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD 191 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD 191 (294)
.+..|... ++.+++|||||+|..+..++ .+|+++|-.+ +++.++.+++...-....++|
T Consensus 26 ~ls~L~~~-~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 26 TLSKLRPR-PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHhhCCC-CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 45555555 77899999999999998876 4899999766 577888888865321222799
Q ss_pred EEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCC-eEEEEe
Q 022592 192 VAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGF-APVSKD 257 (294)
Q Consensus 192 ~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf-~~~~~~ 257 (294)
.|+...+ -+.+.+++.+...|+|||.+++--+.- -+.....+.+++.|+ +++.+.
T Consensus 105 aiFIGGg---~~i~~ile~~~~~l~~ggrlV~naitl--------E~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 105 AIFIGGG---GNIEEILEAAWERLKPGGRLVANAITL--------ETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred EEEECCC---CCHHHHHHHHHHHcCcCCeEEEEeecH--------HHHHHHHHHHHHcCCceEEEEE
Confidence 9998776 577899999999999999999953221 133556788999999 666643
No 111
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.00 E-value=4.5e-09 Score=92.24 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=84.1
Q ss_pred CCEEEEEcCcccHHHHHhc---cceEEEeccCC------CCcEEEccCCCCCCCCCCccEEEEcccccC-CCHHHHHHHH
Q 022592 142 SLVIADFGCGDARLAKSVK---NKVFSFDLVSN------DPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INFPNYLQEA 211 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~~~~l~el 211 (294)
..++||||+|.|..+..++ .+|++.++|.. .-.|.+.+..+..-.+.+||+|.|..+|-. .+|...|+.|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i 174 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRDI 174 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHHHH
Confidence 4579999999999999887 58999999982 222334444444444568999999999986 6899999999
Q ss_pred HHhcCcCcEEEEEeecCC----------CCCCC-----CCC----CHHHHHHHHHHCCCeEEEE
Q 022592 212 QRVLKPSGWLLIAEVKSR----------FDPNT-----GGA----DPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 212 ~r~LkpgG~l~i~e~~~~----------~~~~~-----~~~----~~~~~~~~l~~~Gf~~~~~ 256 (294)
++.|+|+|.++++-+.+. ..+.. .+. ..+.+.+.++.+||+++..
T Consensus 175 ~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~ 238 (265)
T PF05219_consen 175 RRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERW 238 (265)
T ss_pred HHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999999999743221 11110 011 3345558899999999883
No 112
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.00 E-value=5.6e-09 Score=89.31 Aligned_cols=129 Identities=26% Similarity=0.337 Sum_probs=100.5
Q ss_pred CEEEEEcCcccHHHHHhc--cceEEEeccCCCCcEEEccCCCCCCC---CCCccEEEEcccccCC-C---HHHHHHHHHH
Q 022592 143 LVIADFGCGDARLAKSVK--NKVFSFDLVSNDPSVIACDMSNTPLN---SSSVDVAVFCLSLMGI-N---FPNYLQEAQR 213 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~--~~v~gvD~s~~~~~~~~~d~~~lp~~---~~~fD~Vi~~~~l~~~-~---~~~~l~el~r 213 (294)
.++|||||=+........ -.|+.+|+.+....+..+|+.+.|+| .+.||+|+++.+|.++ + +...+..+.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~ 132 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHK 132 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHH
Confidence 589999998665443322 25999999999999999999998875 6789999999999994 3 4589999999
Q ss_pred hcCcCcE-----EEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEECCc
Q 022592 214 VLKPSGW-----LLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKKEK 273 (294)
Q Consensus 214 ~LkpgG~-----l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~~~ 273 (294)
.|+|+|. |+++-..+- .....+++.+.+..+|+..||..+...... ....+.|++...
T Consensus 133 fL~~~g~~~~~~LFlVlP~~C-v~NSRy~~~~~l~~im~~LGf~~~~~~~~~-Kl~y~l~r~~~~ 195 (219)
T PF11968_consen 133 FLKPPGLSLFPSLFLVLPLPC-VTNSRYMTEERLREIMESLGFTRVKYKKSK-KLAYWLFRKSGK 195 (219)
T ss_pred HhCCCCccCcceEEEEeCchH-hhcccccCHHHHHHHHHhCCcEEEEEEecC-eEEEEEEeecCC
Confidence 9999999 888754332 234445788999999999999999875544 444556666543
No 113
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.00 E-value=2.5e-09 Score=92.63 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=65.9
Q ss_pred HHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccE
Q 022592 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDV 192 (294)
Q Consensus 131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~ 192 (294)
.++..+... ++.+|||||||+|.++..++ ..|+++|+++ .++.+..+|........++||+
T Consensus 69 ~l~~~l~~~-~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 69 RMTELLELK-PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HHHHhcCCC-CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCE
Confidence 344444433 66799999999999877665 4799999987 2467888887653333478999
Q ss_pred EEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 193 AVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 193 Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
|++...+++. ...+.+.|+|||.+++.-
T Consensus 148 I~~~~~~~~~-----~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 148 ILVTAAAPEI-----PRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEEccCchhh-----hHHHHHhcCCCcEEEEEE
Confidence 9998765433 456789999999999863
No 114
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.98 E-value=1.1e-09 Score=96.87 Aligned_cols=100 Identities=23% Similarity=0.340 Sum_probs=82.3
Q ss_pred cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-cceEEEeccC--------CCC-cEEEccCCCCCCCCCCccEEEEc
Q 022592 127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-NKVFSFDLVS--------NDP-SVIACDMSNTPLNSSSVDVAVFC 196 (294)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-~~v~gvD~s~--------~~~-~~~~~d~~~lp~~~~~fD~Vi~~ 196 (294)
.+|....+++...+.+..++|+|||.|.++..-. ..++|+|++. .+. ....+|+..+|+.+.+||.+++.
T Consensus 31 ~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 31 APWPMVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSI 110 (293)
T ss_pred CccHHHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhh
Confidence 3455577777777678899999999998776543 3688999887 344 68899999999999999999999
Q ss_pred ccccCC----CHHHHHHHHHHhcCcCcEEEEEee
Q 022592 197 LSLMGI----NFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 197 ~~l~~~----~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
.++||. -...+++++.|+|+|||...|.-|
T Consensus 111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 999994 245899999999999999888643
No 115
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.97 E-value=1.9e-08 Score=92.00 Aligned_cols=103 Identities=21% Similarity=0.213 Sum_probs=75.4
Q ss_pred CEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc--
Q 022592 143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL-- 199 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l-- 199 (294)
.+|||+|||+|.++..++ ..|+|+|+|+ .++.++.+|+.. +++.++||+|+++...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 589999999999988876 3799999997 247788899754 2345689999987321
Q ss_pred -----------cCC-------------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 200 -----------MGI-------------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 200 -----------~~~-------------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.|. ....++.++.++|+|||.+++ ++.. +...+..++.+.||....
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~-E~g~---------~~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV-EVGN---------SRVHLEEAYPDVPFTWLE 283 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE-EECc---------CHHHHHHHHhhCCCEEEE
Confidence 110 024678999999999999987 4332 235688888888876654
Q ss_pred E
Q 022592 256 K 256 (294)
Q Consensus 256 ~ 256 (294)
.
T Consensus 284 ~ 284 (307)
T PRK11805 284 F 284 (307)
T ss_pred e
Confidence 4
No 116
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.1e-08 Score=91.84 Aligned_cols=127 Identities=23% Similarity=0.311 Sum_probs=86.4
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCC
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS 188 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~ 188 (294)
.+.+++.+... .+.+|||+|||.|.++..++ ..++.+|++. .+..+...|+.. +..+
T Consensus 147 S~lLl~~l~~~-~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~- 223 (300)
T COG2813 147 SRLLLETLPPD-LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG- 223 (300)
T ss_pred HHHHHHhCCcc-CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-
Confidence 45577777766 34499999999999999887 3889999886 122345555544 3333
Q ss_pred CccEEEEcccccC---CC---HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCe
Q 022592 189 SVDVAVFCLSLMG---IN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKM 262 (294)
Q Consensus 189 ~fD~Vi~~~~l~~---~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 262 (294)
+||+|+|+.-+|- .. -.+++.++.+.|++||.|+|+-- .+- .+...|++. |..++.-..+.-
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan--~~l---------~y~~~L~~~-Fg~v~~la~~~g 291 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN--RHL---------PYEKKLKEL-FGNVEVLAKNGG 291 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc--CCC---------ChHHHHHHh-cCCEEEEEeCCC
Confidence 8999999999985 22 23899999999999999999742 221 122334332 444454455666
Q ss_pred EEEEEEEE
Q 022592 263 FIMFYFKK 270 (294)
Q Consensus 263 f~~i~~~k 270 (294)
|.++..+|
T Consensus 292 f~Vl~a~k 299 (300)
T COG2813 292 FKVLRAKK 299 (300)
T ss_pred EEEEEEec
Confidence 77776654
No 117
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.90 E-value=6e-09 Score=77.53 Aligned_cols=81 Identities=30% Similarity=0.545 Sum_probs=66.8
Q ss_pred EEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCC-CCCCccEEEEcccccC-C
Q 022592 144 VIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG-I 202 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~-~~~~fD~Vi~~~~l~~-~ 202 (294)
+|||+|||.|.++..+. ..++++|+++ ..+.++.+|+.+... ..++||+|++..++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 48999999999887776 3889999986 245677788877553 4578999999999987 4
Q ss_pred -CHHHHHHHHHHhcCcCcEEEEE
Q 022592 203 -NFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 203 -~~~~~l~el~r~LkpgG~l~i~ 224 (294)
....++..+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 6779999999999999999875
No 118
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.90 E-value=1.2e-08 Score=89.95 Aligned_cols=84 Identities=27% Similarity=0.371 Sum_probs=69.0
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEcccccCC---CH
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NF 204 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~~ 204 (294)
...+|||||+|+|.++..++ -+++.+|+-. +++.++.+|+. -++|. +|+|++.++||+. +.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~ 176 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDC 176 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHH
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcchHHH
Confidence 44689999999999998887 2788899864 68999999998 66665 9999999999975 34
Q ss_pred HHHHHHHHHhcCcC--cEEEEEeec
Q 022592 205 PNYLQEAQRVLKPS--GWLLIAEVK 227 (294)
Q Consensus 205 ~~~l~el~r~Lkpg--G~l~i~e~~ 227 (294)
..+|+.+++.|+|| |.|+|.|..
T Consensus 177 ~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 177 VKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp HHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCeEEEEeec
Confidence 58899999999999 999999854
No 119
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=3e-08 Score=95.09 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC----CCCCCccEEE
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP----LNSSSVDVAV 194 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp----~~~~~fD~Vi 194 (294)
.++.+|||+|||+|..+..++ ..|+++|+++ .++.++.+|+..++ +..++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 367899999999999877665 3799999997 25678888988765 4467899999
Q ss_pred Ecc------cccC-CC----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC-C
Q 022592 195 FCL------SLMG-IN----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL-G 250 (294)
Q Consensus 195 ~~~------~l~~-~~----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~-G 250 (294)
+.. ++.+ .+ ...++.++.++|||||.|++++..-... -+.+.+..++++. +
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-----Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-----ENEAQIEQFLARHPD 405 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-----hHHHHHHHHHHhCCC
Confidence 642 3322 22 2477999999999999999875331111 1345677778776 5
Q ss_pred CeEE
Q 022592 251 FAPV 254 (294)
Q Consensus 251 f~~~ 254 (294)
|++.
T Consensus 406 ~~~~ 409 (434)
T PRK14901 406 WKLE 409 (434)
T ss_pred cEec
Confidence 7654
No 120
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.89 E-value=2.5e-08 Score=97.24 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=75.3
Q ss_pred CCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~ 200 (294)
..+|||+|||+|.++..++ ..|+|+|+|+ .++.++.+|+.. +++.++||+|+++....
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 3589999999999988775 3799999997 246678888754 23456899999854221
Q ss_pred --------------C---------CC----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592 201 --------------G---------IN----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253 (294)
Q Consensus 201 --------------~---------~~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 253 (294)
| .+ ...++..+.++|+|||.+++ ++.. ...+.+..++.+.||..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~--------~q~~~v~~~~~~~g~~~ 288 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF--------KQEEAVTQIFLDHGYNI 288 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC--------chHHHHHHHHHhcCCCc
Confidence 1 01 23567788899999999877 4321 23478889999999986
Q ss_pred EE
Q 022592 254 VS 255 (294)
Q Consensus 254 ~~ 255 (294)
+.
T Consensus 289 ~~ 290 (506)
T PRK01544 289 ES 290 (506)
T ss_pred eE
Confidence 55
No 121
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.86 E-value=5.4e-09 Score=89.62 Aligned_cols=117 Identities=19% Similarity=0.319 Sum_probs=91.7
Q ss_pred CCEEEEEcCcccHHHHHhc----cceEEEeccCC-------------CCcEEEccCCCCCCCCCCccEEEEcccccCC-C
Q 022592 142 SLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-N 203 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~ 203 (294)
...++|||||-|.+...+. .+++-+|.|.. ...+.++|-+.++|.++++|+|+++.++||. +
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 3479999999999999887 37788998861 2346788999999999999999999999996 8
Q ss_pred HHHHHHHHHHhcCcCcEEEEEeec-------------------CCCCCCCCCC-CHHHHHHHHHHCCCeEEEEec
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAEVK-------------------SRFDPNTGGA-DPNKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e~~-------------------~~~~~~~~~~-~~~~~~~~l~~~Gf~~~~~~~ 258 (294)
.+..+..+...|||.|.++-+-+. .-+.|+...+ ...++-.+|..+||....++.
T Consensus 153 LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDt 227 (325)
T KOG2940|consen 153 LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDT 227 (325)
T ss_pred CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecc
Confidence 899999999999999998875221 1223333333 345788999999998876543
No 122
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.86 E-value=1.9e-08 Score=86.00 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=65.2
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCC-CCCCCCCc
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSV 190 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~-lp~~~~~f 190 (294)
++..+.. .++.+|||+|||+|.++..++ ..|+++|+++ .+++++.+|+.. ++.....+
T Consensus 32 l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 4555543 366799999999999987775 4799999987 246777787754 22212335
Q ss_pred cEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 191 DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 191 D~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
|.|++.. ..+...+++++.++|+|||.+++...
T Consensus 111 d~v~~~~---~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG---GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC---CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 7665432 13568999999999999999999753
No 123
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.84 E-value=3.4e-09 Score=100.42 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=81.5
Q ss_pred EEEEEcCcccHHHHHhcc-ceEEEeccC-----CCCcEE--------Ecc--CCCCCCCCCCccEEEEcccccC--CCHH
Q 022592 144 VIADFGCGDARLAKSVKN-KVFSFDLVS-----NDPSVI--------ACD--MSNTPLNSSSVDVAVFCLSLMG--INFP 205 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~~-~v~gvD~s~-----~~~~~~--------~~d--~~~lp~~~~~fD~Vi~~~~l~~--~~~~ 205 (294)
.+||||||.|.|+..|.. .|+.+-+.+ .+++|. .+- ...+||++++||+|.|+..+.. .+-.
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g 199 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG 199 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhccc
Confidence 589999999999999884 565554444 233332 112 2458999999999999888874 2445
Q ss_pred HHHHHHHHhcCcCcEEEEEeecCC-CCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEEEEEC
Q 022592 206 NYLQEAQRVLKPSGWLLIAEVKSR-FDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFYFKKK 271 (294)
Q Consensus 206 ~~l~el~r~LkpgG~l~i~e~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~~~k~ 271 (294)
.+|-++.|+|+|||+++++...-. -......-....+.++.+...|+.+..... +.+++|.
T Consensus 200 ~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~-----~aIwqKp 261 (506)
T PF03141_consen 200 FLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGD-----TAIWQKP 261 (506)
T ss_pred ceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCC-----EEEEecc
Confidence 688899999999999999743222 000000112346677788888887764332 5556664
No 124
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.82 E-value=7.7e-09 Score=89.38 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=65.5
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCC
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNS 187 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~ 187 (294)
+..+++.+... ++.+|||||||+|+++..++ ..|+++|..+ .++.++.+|........
T Consensus 61 ~a~~l~~L~l~-pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLK-PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC--TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcC-CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 35567777655 88899999999999988776 2588999887 37789999987644456
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
+.||.|++..+.... =..+.+.|++||+|++.
T Consensus 140 apfD~I~v~~a~~~i-----p~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 140 APFDRIIVTAAVPEI-----PEALLEQLKPGGRLVAP 171 (209)
T ss_dssp -SEEEEEESSBBSS-------HHHHHTEEEEEEEEEE
T ss_pred CCcCEEEEeeccchH-----HHHHHHhcCCCcEEEEE
Confidence 789999998876422 23477789999999995
No 125
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.5e-08 Score=86.66 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=72.2
Q ss_pred HHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCC
Q 022592 128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS 189 (294)
Q Consensus 128 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~ 189 (294)
.+..+++.|... ++.+|||||||+|+.+..++ .+|+.+|..+ .++.+.++|-..-.-+.+.
T Consensus 60 ~vA~m~~~L~~~-~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 60 MVARMLQLLELK-PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHHHHhCCC-CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 356677777766 77899999999999888776 5899999876 4788999998775555688
Q ss_pred ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
||.|+...+.... =..+.+.|+|||++++-.
T Consensus 139 yD~I~Vtaaa~~v-----P~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 139 YDRIIVTAAAPEV-----PEALLDQLKPGGRLVIPV 169 (209)
T ss_pred cCEEEEeeccCCC-----CHHHHHhcccCCEEEEEE
Confidence 9999987764322 134677899999999964
No 126
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=1.1e-07 Score=91.56 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=78.4
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCCCc
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV 190 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~f 190 (294)
+...+....++.+|||+|||+|..+..++ ..|+++|+++ .++.++.+|+..++ ++++|
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~f 319 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQP 319 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCC
Confidence 33333333467799999999998766554 3799999998 24678888987765 45789
Q ss_pred cEEEEcc------ccc-C------CC----------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 022592 191 DVAVFCL------SLM-G------IN----------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVC 247 (294)
Q Consensus 191 D~Vi~~~------~l~-~------~~----------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~ 247 (294)
|+|++.. ++. + .+ ...++.++.++|+|||.|+++...-... -+...+..+|+
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~-----Ene~~v~~~l~ 394 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE-----ENELQIEAFLQ 394 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-----hHHHHHHHHHH
Confidence 9999621 111 1 11 1358999999999999999976432211 12345667777
Q ss_pred HC-CCeEE
Q 022592 248 DL-GFAPV 254 (294)
Q Consensus 248 ~~-Gf~~~ 254 (294)
.. +|...
T Consensus 395 ~~~~~~~~ 402 (445)
T PRK14904 395 RHPEFSAE 402 (445)
T ss_pred hCCCCEEe
Confidence 66 46544
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.79 E-value=8.3e-08 Score=91.84 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=79.2
Q ss_pred HHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC--------------CCcEEEccCCCCC--CCCCCccE
Q 022592 134 KWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN--------------DPSVIACDMSNTP--LNSSSVDV 192 (294)
Q Consensus 134 ~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~--------------~~~~~~~d~~~lp--~~~~~fD~ 192 (294)
..+.. .++.+|||+|||+|..+..++ ..|+++|+++. ++.++.+|+..++ ++.++||.
T Consensus 238 ~~l~~-~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 238 TLLAP-QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred HHcCC-CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence 34433 367899999999999887765 37999999982 3467888987654 34578999
Q ss_pred EEEccccc------------C-CC----------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592 193 AVFCLSLM------------G-IN----------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL 249 (294)
Q Consensus 193 Vi~~~~l~------------~-~~----------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~ 249 (294)
|++..... | .. ...++..+.++|+|||.++++...-... -+.+.+...+++.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-----Ene~~v~~~l~~~ 391 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-----ENEQQIKAFLARH 391 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-----hCHHHHHHHHHhC
Confidence 99533211 1 01 1368999999999999999876422111 2345667777765
Q ss_pred -CCeEEE
Q 022592 250 -GFAPVS 255 (294)
Q Consensus 250 -Gf~~~~ 255 (294)
+|+++.
T Consensus 392 ~~~~~~~ 398 (427)
T PRK10901 392 PDAELLD 398 (427)
T ss_pred CCCEEec
Confidence 576544
No 128
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.79 E-value=2.7e-08 Score=91.42 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=65.3
Q ss_pred HHHHHhhccCCCCEEEEEcCcccHHHHHhcc------ceEEEeccC---------------CCCcEEEccCCCCCCCCCC
Q 022592 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVKN------KVFSFDLVS---------------NDPSVIACDMSNTPLNSSS 189 (294)
Q Consensus 131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~------~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~ 189 (294)
.+++.+... ++.+|||||||+|.++..++. .|+++|+++ .++.++.+|+...+...++
T Consensus 71 ~ll~~L~i~-~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcCCC-CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 344444333 667999999999999887762 589999997 2567888888766555578
Q ss_pred ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
||+|++...+.+ ....+.+.|+|||.+++.
T Consensus 150 fD~Ii~~~g~~~-----ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 150 YDVIFVTVGVDE-----VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ccEEEECCchHH-----hHHHHHHhcCCCCEEEEE
Confidence 999998766543 234577899999998884
No 129
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.78 E-value=1.8e-07 Score=83.48 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=85.2
Q ss_pred CCEEEEEcCcccHHHHHhcc---ceEEEeccC------------------------------------------------
Q 022592 142 SLVIADFGCGDARLAKSVKN---KVFSFDLVS------------------------------------------------ 170 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~------------------------------------------------ 170 (294)
..+||--|||-|+++..++. .+.|.+.|-
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p 136 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP 136 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence 46899999999999999984 566766663
Q ss_pred -------CCCcEEEccCCCCCCCC---CCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCC-----
Q 022592 171 -------NDPSVIACDMSNTPLNS---SSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT----- 234 (294)
Q Consensus 171 -------~~~~~~~~d~~~lp~~~---~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~----- 234 (294)
.++.+..+|+..+..++ ++||+|+.++-+-- .|....|..|.++|||||..+=....-......
T Consensus 137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~ 216 (270)
T PF07942_consen 137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNE 216 (270)
T ss_pred ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCC
Confidence 13445667776654444 78999999866654 478899999999999999555443221111111
Q ss_pred --CCCCHHHHHHHHHHCCCeEEEEec
Q 022592 235 --GGADPNKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 235 --~~~~~~~~~~~l~~~Gf~~~~~~~ 258 (294)
-.++.+++..+++..||+++....
T Consensus 217 ~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 217 MSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 347999999999999999987444
No 130
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.77 E-value=3.7e-08 Score=87.29 Aligned_cols=117 Identities=19% Similarity=0.294 Sum_probs=77.6
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccCC-------------------------------------------CC
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------------------------------------------DP 173 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------------------------------------------~~ 173 (294)
.+.++||||||+-.+-..-+ ..++..|.++. .+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 35589999999966532222 36778887751 01
Q ss_pred -cEEEccCCCC-CCCC-----CCccEEEEcccccC--CC---HHHHHHHHHHhcCcCcEEEEEeecCCCCCCC-------
Q 022592 174 -SVIACDMSNT-PLNS-----SSVDVAVFCLSLMG--IN---FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNT------- 234 (294)
Q Consensus 174 -~~~~~d~~~l-p~~~-----~~fD~Vi~~~~l~~--~~---~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~------- 234 (294)
.++.||+... |+.. ..||+|++++.|+. .+ ...+++.+.++|||||.|+++.+.....-..
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~ 215 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPC 215 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE-
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccc
Confidence 3678899763 3332 25999999999996 23 5688999999999999999986544221111
Q ss_pred CCCCHHHHHHHHHHCCCeEEEEe
Q 022592 235 GGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 235 ~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
-.++.+.+.+.|+++||.+....
T Consensus 216 l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 216 LPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp --B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCEEEecc
Confidence 12588999999999999998865
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=1.5e-07 Score=90.54 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC--CCCCCccEEEEc
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFC 196 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~ 196 (294)
.++.+|||+|||+|..+..++ ..|+++|+++ .++.++.+|+..++ ++ ++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 366799999999999887665 3799999987 24678888987653 33 679999975
Q ss_pred ccccC-------C------C----------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC-Ce
Q 022592 197 LSLMG-------I------N----------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG-FA 252 (294)
Q Consensus 197 ~~l~~-------~------~----------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G-f~ 252 (294)
..... . . ...++..+.++|+|||.|+++...-.... +...+..++++.+ |+
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E-----ne~vv~~~l~~~~~~~ 402 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE-----NEEVIEAFLEEHPEFE 402 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh-----hHHHHHHHHHhCCCcE
Confidence 43111 1 1 13579999999999999997643221111 2345566777663 76
Q ss_pred EEE
Q 022592 253 PVS 255 (294)
Q Consensus 253 ~~~ 255 (294)
++.
T Consensus 403 ~~~ 405 (444)
T PRK14902 403 LVP 405 (444)
T ss_pred Eec
Confidence 655
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=7.7e-08 Score=92.06 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=79.1
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC-CCCCC
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSS 189 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp-~~~~~ 189 (294)
++..+....++.+|||+|||+|..+..++ ..|+++|+++ .++.++.+|+..++ +..++
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~ 307 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDT 307 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhcc
Confidence 33333333467899999999998776554 4799999998 24567888887765 44678
Q ss_pred ccEEEEcccccC-----CC------------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHH
Q 022592 190 VDVAVFCLSLMG-----IN------------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAV 246 (294)
Q Consensus 190 fD~Vi~~~~l~~-----~~------------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l 246 (294)
||.|++...... .+ ..+.|..+.++|+|||.++++...-... -+.+.+..+|
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e-----Ene~vv~~fl 382 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE-----ENTEVVKRFV 382 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-----hCHHHHHHHH
Confidence 999996332211 11 1356889999999999999986542211 1335556666
Q ss_pred HHC-CCeEEE
Q 022592 247 CDL-GFAPVS 255 (294)
Q Consensus 247 ~~~-Gf~~~~ 255 (294)
++. +|.++.
T Consensus 383 ~~~~~~~~~~ 392 (431)
T PRK14903 383 YEQKDAEVID 392 (431)
T ss_pred HhCCCcEEec
Confidence 654 565443
No 133
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=5e-07 Score=81.66 Aligned_cols=115 Identities=23% Similarity=0.307 Sum_probs=76.4
Q ss_pred EEEEEcCcccHHHHHhc-----cceEEEeccCC------------C---CcEEEccCCCCCCCCCCccEEEEcccccCC-
Q 022592 144 VIADFGCGDARLAKSVK-----NKVFSFDLVSN------------D---PSVIACDMSNTPLNSSSVDVAVFCLSLMGI- 202 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~------------~---~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~- 202 (294)
+|||||||+|..+..++ ..|+|+|+|+. + +.++.+|... ++ .++||+|+++.-.--.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PL-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-cc-CCceeEEEeCCCCCCCc
Confidence 79999999999999887 28999999981 2 2344445433 12 2389999987654210
Q ss_pred -----------C--------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC-CeEEE-
Q 022592 203 -----------N--------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG-FAPVS- 255 (294)
Q Consensus 203 -----------~--------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~- 255 (294)
+ ...++.++.+.|+|||.+++- ... -..+.+.+++.+.| |..+.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le-~g~--------~q~~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE-IGL--------TQGEAVKALFEDTGFFEIVET 261 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE-ECC--------CcHHHHHHHHHhcCCceEEEE
Confidence 1 236788899999998888874 221 13478999999999 65444
Q ss_pred EeccCCeEEEEEEE
Q 022592 256 KDFSNKMFIMFYFK 269 (294)
Q Consensus 256 ~~~~~~~f~~i~~~ 269 (294)
.........++.++
T Consensus 262 ~~d~~g~~rv~~~~ 275 (280)
T COG2890 262 LKDLFGRDRVVLAK 275 (280)
T ss_pred EecCCCceEEEEEE
Confidence 22333344444443
No 134
>PHA03412 putative methyltransferase; Provisional
Probab=98.72 E-value=1.5e-07 Score=82.18 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=77.9
Q ss_pred CCCEEEEEcCcccHHHHHhc--------cceEEEeccC----------CCCcEEEccCCCCCCCCCCccEEEEcccccCC
Q 022592 141 PSLVIADFGCGDARLAKSVK--------NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI 202 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~--------~~v~gvD~s~----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~ 202 (294)
.+.+|||+|||+|.++..++ ..|+++|+++ .++.++.+|+...++ +++||+||++.-+.-.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 35699999999999988664 2699999998 357889999987665 5689999998877621
Q ss_pred ---C----------HHHHHHHHHHhcCcCcEEEEE-eecCCCCCC------CCCCCHHHHHHHHHHCCCeEE
Q 022592 203 ---N----------FPNYLQEAQRVLKPSGWLLIA-EVKSRFDPN------TGGADPNKFSKAVCDLGFAPV 254 (294)
Q Consensus 203 ---~----------~~~~l~el~r~LkpgG~l~i~-e~~~~~~~~------~~~~~~~~~~~~l~~~Gf~~~ 254 (294)
+ ...++..+.+++++|+. ++- .+...-.+. ....+...+.+++++.|+...
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLEMN 198 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeeccCcccHHHHHHHHhcCeeec
Confidence 1 34688888886676664 331 222211111 222466788899999887553
No 135
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.72 E-value=5.2e-08 Score=87.35 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS 198 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~ 198 (294)
.++.+|||+|||+|..+..++ ..|+++|+++ .++.++..|+..++...+.||.|++...
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 367899999999999887664 3799999997 2456778887766655567999996432
Q ss_pred cc------C-CC----------------HHHHHHHHHHhcCcCcEEEEEee
Q 022592 199 LM------G-IN----------------FPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 199 l~------~-~~----------------~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
.. + .+ ...+|..+.++|+|||+|+.+..
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 11 1 00 13589999999999999988753
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.71 E-value=9.1e-08 Score=79.94 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=65.3
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccEE
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVA 193 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~V 193 (294)
+.+++.+... ++..|||||||+|.++..++ .+++++|+++ .++.++.+|+..+++++.+||.|
T Consensus 3 ~~i~~~~~~~-~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 3 DKIVRAANLR-PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHHHHhcCCC-CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE
Confidence 3455555443 56799999999999999887 4799999997 25789999999988877779999
Q ss_pred EEcccccCCCHHHHHHHHHHh--cCcCcEEEEE
Q 022592 194 VFCLSLMGINFPNYLQEAQRV--LKPSGWLLIA 224 (294)
Q Consensus 194 i~~~~l~~~~~~~~l~el~r~--LkpgG~l~i~ 224 (294)
+++..++.. ...+..+.+. +.++|.+++-
T Consensus 82 i~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLPYNIS--TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred EECCCcccH--HHHHHHHHhcCCCcceEEEEEE
Confidence 987655432 2333333332 3466666553
No 137
>PRK04457 spermidine synthase; Provisional
Probab=98.70 E-value=6.8e-08 Score=86.51 Aligned_cols=84 Identities=18% Similarity=0.276 Sum_probs=63.5
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCC-CCCCCCCccEEEEccc
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSN-TPLNSSSVDVAVFCLS 198 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~~~ 198 (294)
+..+|||||||+|.++..++ .+++++|+++ +++.++.+|+.. +.-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 45689999999999998775 3789999976 356778888754 222236799999753
Q ss_pred ccC------CCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 199 LMG------INFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 199 l~~------~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
+.. .....+++++.++|+|||++++--
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 221 123699999999999999999853
No 138
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.70 E-value=2.7e-08 Score=91.76 Aligned_cols=85 Identities=21% Similarity=0.378 Sum_probs=60.0
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccCC-------------------------CCcEEEccCCCCC----CCC
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------------------------DPSVIACDMSNTP----LNS 187 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------------------------~~~~~~~d~~~lp----~~~ 187 (294)
++..|||||||-|..+.-.. ..++|+|++.. ...++.+|..... +++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 56799999999887655443 58999999971 1235677765421 233
Q ss_pred --CCccEEEEcccccC-C-C---HHHHHHHHHHhcCcCcEEEEEe
Q 022592 188 --SSVDVAVFCLSLMG-I-N---FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 188 --~~fD~Vi~~~~l~~-~-~---~~~~l~el~r~LkpgG~l~i~e 225 (294)
..||+|-|.++||+ + + ...+|..+...|+|||+++.+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 58999999999998 2 2 4578999999999999999973
No 139
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.69 E-value=3.5e-07 Score=87.98 Aligned_cols=109 Identities=14% Similarity=0.312 Sum_probs=75.5
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCC----CCCCCCC
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN----TPLNSSS 189 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~----lp~~~~~ 189 (294)
+++.+... ++.+|||+|||+|.++..++ ..|+|+|+|+ .++.++.+|+.+ .++.+++
T Consensus 289 vl~~l~~~-~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 289 ALEWLDPQ-PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred HHHHhcCC-CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCC
Confidence 44444333 56799999999999998887 4899999998 257889999864 2344568
Q ss_pred ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHH---HHHHHCCCeEEEE
Q 022592 190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFS---KAVCDLGFAPVSK 256 (294)
Q Consensus 190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~---~~l~~~Gf~~~~~ 256 (294)
||+|++...-. .....+..+.+ ++|+++++++- ++.++. ..|.+.||++..+
T Consensus 368 fD~Vi~dPPr~--g~~~~~~~l~~-~~~~~ivyvSC------------np~tlaRDl~~L~~~gY~l~~i 422 (443)
T PRK13168 368 FDKVLLDPPRA--GAAEVMQALAK-LGPKRIVYVSC------------NPATLARDAGVLVEAGYRLKRA 422 (443)
T ss_pred CCEEEECcCCc--ChHHHHHHHHh-cCCCeEEEEEe------------ChHHhhccHHHHhhCCcEEEEE
Confidence 99998764422 23456665555 68998888863 222221 3456789999883
No 140
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.69 E-value=4.5e-08 Score=83.76 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=56.4
Q ss_pred CCCEEEEEcCcccH--HHH--Hhc-------c---ceEEEeccC------------------------------------
Q 022592 141 PSLVIADFGCGDAR--LAK--SVK-------N---KVFSFDLVS------------------------------------ 170 (294)
Q Consensus 141 ~~~~VLDiGcG~G~--~~~--~l~-------~---~v~gvD~s~------------------------------------ 170 (294)
...+|+..||++|. ++. .+. . +++|.|+|+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34689999999997 222 221 1 789999997
Q ss_pred -------CCCcEEEccCCCCCCCCCCccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEE
Q 022592 171 -------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 171 -------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~ 224 (294)
.++.|...|+.+.+.+.+.||+|+|..+|.+++. ..+++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 3567888899884445678999999999999754 58999999999999999996
No 141
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.68 E-value=1.8e-07 Score=89.56 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=75.5
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccCC------------CC--cE--EEccCCCCCC--CCC
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------DP--SV--IACDMSNTPL--NSS 188 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~------------~~--~~--~~~d~~~lp~--~~~ 188 (294)
+...+... ++.+|||+|||+|..+..++ ..|+++|+++. .+ .+ ..+|....+. +.+
T Consensus 230 ~~~~L~~~-~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 230 VATWLAPQ-NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHhCCC-CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 33444433 67899999999998777665 48999999982 12 22 4456554443 467
Q ss_pred CccEEEEc------ccccC-CC----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHH
Q 022592 189 SVDVAVFC------LSLMG-IN----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKA 245 (294)
Q Consensus 189 ~fD~Vi~~------~~l~~-~~----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~ 245 (294)
+||.|++. .++.+ .+ ...+|.++.++|||||.|++++..-... -+...+..+
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~-----Ene~~v~~~ 383 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE-----ENSEQIKAF 383 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-----hCHHHHHHH
Confidence 89999963 22332 12 2478999999999999999986432211 134556677
Q ss_pred HHHC-CCe
Q 022592 246 VCDL-GFA 252 (294)
Q Consensus 246 l~~~-Gf~ 252 (294)
+++. +|.
T Consensus 384 l~~~~~~~ 391 (426)
T TIGR00563 384 LQEHPDFP 391 (426)
T ss_pred HHhCCCCe
Confidence 7765 354
No 142
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.66 E-value=4.5e-07 Score=81.53 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=75.3
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccCC---------------------CCcEEEccCCC------CCCCCCC
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN---------------------DPSVIACDMSN------TPLNSSS 189 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~---------------------~~~~~~~d~~~------lp~~~~~ 189 (294)
++..++|+|||-|..+.-.- ..++|+||+.. .+.|+.+|... +++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 56789999999998665442 48999999972 24688888754 4455666
Q ss_pred ccEEEEcccccC-C----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592 190 VDVAVFCLSLMG-I----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL 249 (294)
Q Consensus 190 fD~Vi~~~~l~~-~----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~ 249 (294)
||+|-|.+++|+ + ..+.+|+.+.++|+|||+++-+- .+.+.+..-|+..
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi-----------Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI-----------PDSDVIIKRLRAG 250 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec-----------CcHHHHHHHHHhc
Confidence 999999999997 2 35678999999999999998863 2456677777765
No 143
>PRK00811 spermidine synthase; Provisional
Probab=98.63 E-value=1.1e-07 Score=86.16 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=63.3
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------------CCCcEEEccCCC-CCCCCCCccEEE
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------------NDPSVIACDMSN-TPLNSSSVDVAV 194 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------------~~~~~~~~d~~~-lp~~~~~fD~Vi 194 (294)
...+||+||||+|..+..+. .+|+++|+++ +++.++.+|+.. +....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 44689999999999988775 3789999987 245677888755 233467899999
Q ss_pred EcccccCC-----CHHHHHHHHHHhcCcCcEEEEE
Q 022592 195 FCLSLMGI-----NFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 195 ~~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~ 224 (294)
+...-.+. -...+++.+.++|+|||.+++-
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 86543331 1257889999999999998873
No 144
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.7e-06 Score=71.87 Aligned_cols=120 Identities=17% Similarity=0.324 Sum_probs=88.1
Q ss_pred CCEEEEEcCcccHHHHHhcc------ceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 142 SLVIADFGCGDARLAKSVKN------KVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~~------~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
...+||||||+|..+..|+. .+.++|+++ ..+..+++|+...- ..++.|+++++....-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcCc
Confidence 35799999999998888862 467899998 24567888876532 2388999998766543
Q ss_pred C------------------C----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE---E
Q 022592 202 I------------------N----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS---K 256 (294)
Q Consensus 202 ~------------------~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~---~ 256 (294)
. + .+.++..+-.+|.|.|++++..+..+. ++++.++++..||.... .
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~--------p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK--------PKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC--------HHHHHHHHhhcccceeEEEEE
Confidence 1 1 235667777889999999998766544 48899999999997765 3
Q ss_pred eccCCeEEEEEEEE
Q 022592 257 DFSNKMFIMFYFKK 270 (294)
Q Consensus 257 ~~~~~~f~~i~~~k 270 (294)
.....+.+++.|.+
T Consensus 195 k~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 195 KAGGETLSILKFTR 208 (209)
T ss_pred ecCCceEEEEEEEe
Confidence 45666777777754
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.60 E-value=9e-08 Score=81.97 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=62.5
Q ss_pred EEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCC-CC--CCCCCccEEEEccccc
Q 022592 144 VIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TP--LNSSSVDVAVFCLSLM 200 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~-lp--~~~~~fD~Vi~~~~l~ 200 (294)
.+||||||.|.++..++ ..++|+|+.. .|+.++.+|+.. ++ ++++++|.|+..+.=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 89999999999999887 3799999987 588999999877 22 5578999998776654
Q ss_pred CC---------CHHHHHHHHHHhcCcCcEEEEEe
Q 022592 201 GI---------NFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 201 ~~---------~~~~~l~el~r~LkpgG~l~i~e 225 (294)
|. --..++..+.++|+|||.|.+..
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 42 13589999999999999999864
No 146
>PRK01581 speE spermidine synthase; Validated
Probab=98.59 E-value=3.6e-07 Score=84.62 Aligned_cols=126 Identities=16% Similarity=0.083 Sum_probs=81.6
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------------CCCcEEEccCCC-CCCCCCCccE
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSN-TPLNSSSVDV 192 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------------~~~~~~~~d~~~-lp~~~~~fD~ 192 (294)
...+||+||||+|..+..+. .+|++||+++ +++.++.+|+.. ++...+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 34599999999999877665 3789999987 244556666654 3334568999
Q ss_pred EEEcccccC------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec---c-CCe
Q 022592 193 AVFCLSLMG------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF---S-NKM 262 (294)
Q Consensus 193 Vi~~~~l~~------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~---~-~~~ 262 (294)
|++...-.. .--..+++.+.+.|+|||++++..-..... ......+.+.++++||.+..... . ...
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~----~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~ 305 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA----PLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD 305 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh----HHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence 998743211 112578999999999999988753111111 00113467889999998776221 1 122
Q ss_pred EEEEEEEE
Q 022592 263 FIMFYFKK 270 (294)
Q Consensus 263 f~~i~~~k 270 (294)
|.+.++.+
T Consensus 306 WgF~~as~ 313 (374)
T PRK01581 306 WGFHIAAN 313 (374)
T ss_pred eEEEEEeC
Confidence 55666655
No 147
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.59 E-value=4.3e-07 Score=82.82 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=91.7
Q ss_pred CEEEEEcCcccHHHHHhc---cceEEEeccC-----------CCCcEEEccCCCCCCCCCCccEEEEcccccCC---CHH
Q 022592 143 LVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFP 205 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-----------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~~~ 205 (294)
...+|+|.|.|..+..+. ..+-++++.. +.+..+.+|...- .|. -|+|++.++|||. +..
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcv 255 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCV 255 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCChHHHH
Confidence 578999999999988776 3455555433 2356677777654 333 3799999999983 677
Q ss_pred HHHHHHHHhcCcCcEEEEEeec-CC---CCCCCCC------------------CCHHHHHHHHHHCCCeEEEEeccCCeE
Q 022592 206 NYLQEAQRVLKPSGWLLIAEVK-SR---FDPNTGG------------------ADPNKFSKAVCDLGFAPVSKDFSNKMF 263 (294)
Q Consensus 206 ~~l~el~r~LkpgG~l~i~e~~-~~---~~~~~~~------------------~~~~~~~~~l~~~Gf~~~~~~~~~~~f 263 (294)
++|+.++..|+|||.+++.|.. +. ++..... .+..++..++.++||.+...-.....+
T Consensus 256 kiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~ 335 (342)
T KOG3178|consen 256 KILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSY 335 (342)
T ss_pred HHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCcc
Confidence 9999999999999999999852 21 1110111 478899999999999998877777777
Q ss_pred EEEEEEE
Q 022592 264 IMFYFKK 270 (294)
Q Consensus 264 ~~i~~~k 270 (294)
.+|.+.|
T Consensus 336 ~~Ie~~k 342 (342)
T KOG3178|consen 336 SVIEFHK 342 (342)
T ss_pred chheeCC
Confidence 7776654
No 148
>PLN02672 methionine S-methyltransferase
Probab=98.57 E-value=6.3e-07 Score=93.36 Aligned_cols=122 Identities=19% Similarity=0.289 Sum_probs=82.8
Q ss_pred CcHHHHHHHHhhccC----CCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------C-------------
Q 022592 126 ELPVNIIVKWLKDHS----PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------N------------- 171 (294)
Q Consensus 126 ~~~~~~~~~~l~~~~----~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~------------- 171 (294)
+...+.+++.+...+ .+.+|||+|||+|.++..++ ..|+|+|+|+ .
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 333444555443321 23589999999999998876 3799999997 1
Q ss_pred ------CCcEEEccCCCCCCC-CCCccEEEEcccccC-----------------------------------CC----HH
Q 022592 172 ------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMG-----------------------------------IN----FP 205 (294)
Q Consensus 172 ------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~-----------------------------------~~----~~ 205 (294)
++.++.+|+...... ...||+||++-...- .| ..
T Consensus 179 ~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr 258 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIA 258 (1082)
T ss_pred cccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHH
Confidence 257788888653321 236999998755310 00 14
Q ss_pred HHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHH-HHHHHCCCeEEEE
Q 022592 206 NYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFS-KAVCDLGFAPVSK 256 (294)
Q Consensus 206 ~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~-~~l~~~Gf~~~~~ 256 (294)
.++.++.++|+|||.+++ |+.... .+.+. .++++.||..+.+
T Consensus 259 ~i~~~a~~~L~pgG~l~l-EiG~~q--------~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 259 RAVEEGISVIKPMGIMIF-NMGGRP--------GQAVCERLFERRGFRITKL 301 (1082)
T ss_pred HHHHHHHHhccCCCEEEE-EECccH--------HHHHHHHHHHHCCCCeeEE
Confidence 677888899999998876 554322 36777 6999999988763
No 149
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.56 E-value=6.9e-08 Score=87.90 Aligned_cols=83 Identities=22% Similarity=0.250 Sum_probs=67.3
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
.+..|||||||+|.++...+ .+|+|||.|. .-++++.+.++++.+|.+++|+|++-+.-++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence 56799999999999988776 4999999987 3467888888887777789999998766554
Q ss_pred ----CCHHHHHHHHHHhcCcCcEEEE
Q 022592 202 ----INFPNYLQEAQRVLKPSGWLLI 223 (294)
Q Consensus 202 ----~~~~~~l~el~r~LkpgG~l~i 223 (294)
.-...+|-.--+.|+|||.++=
T Consensus 140 Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 140 LLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2456777777799999998765
No 150
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.55 E-value=3.5e-07 Score=80.02 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=74.9
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCC--------CCc---EEEccCCCCC-----CCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN--------DPS---VIACDMSNTP-----LNSSS 189 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~--------~~~---~~~~d~~~lp-----~~~~~ 189 (294)
..++..+.....+..|||+|||+|.++..++ ..|+|+|+++. +.. +...|+..+. ..-..
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~ 143 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFAT 143 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCcee
Confidence 3345554433366789999999999998885 47999999982 221 3334554322 11235
Q ss_pred ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCC-----CCC---------CCHHHHHHHHHHCCCeEEE
Q 022592 190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN-----TGG---------ADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~-----~~~---------~~~~~~~~~l~~~Gf~~~~ 255 (294)
||+++++.. ..+..+.++|+| |.+++. +.+.|.-. ..+ .....+...+.+.||.+..
T Consensus 144 ~DvsfiS~~-------~~l~~i~~~l~~-~~~~~L-~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 144 FDVSFISLI-------SILPELDLLLNP-NDLTLL-FKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred eeEEEeehH-------hHHHHHHHHhCc-CeEEEE-cChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 676666544 368889999999 776664 23333211 111 2345666777888998877
Q ss_pred Eecc
Q 022592 256 KDFS 259 (294)
Q Consensus 256 ~~~~ 259 (294)
...+
T Consensus 215 ~~~s 218 (228)
T TIGR00478 215 IIFS 218 (228)
T ss_pred EEEC
Confidence 5544
No 151
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.55 E-value=1.7e-07 Score=82.61 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=68.3
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCC-C--
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P-- 184 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~l-p-- 184 (294)
..++..+....+..+|||||||+|..+..++ .+|+++|+++ +++.++.+|+.+. +
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 3455555554456799999999998666554 3899999997 3567888888653 2
Q ss_pred ---CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 185 ---LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 185 ---~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
.+.++||+|++... ......++..+.++|+|||.+++-.
T Consensus 137 ~~~~~~~~fD~VfiDa~--k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD--KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HhCCCCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 12468999987532 1345688999999999999988854
No 152
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=7.1e-07 Score=78.16 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=84.5
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNS 187 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~ 187 (294)
..++..+.-. |+.+|||.|.|+|.++.+|+ ++|+.+|+-+ +++.+..+|+.+.-+++
T Consensus 84 ~~I~~~~gi~-pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 84 GYIVARLGIS-PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHcCCC-CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 3455555554 88999999999999999887 4899999876 34777788888866655
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.||+|+.. -.+|-.++..+..+|+|||.+++... .+. ........|++.||...+
T Consensus 163 -~vDav~LD----mp~PW~~le~~~~~Lkpgg~~~~y~P--~ve------Qv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 163 -DVDAVFLD----LPDPWNVLEHVSDALKPGGVVVVYSP--TVE------QVEKTVEALRERGFVDIE 217 (256)
T ss_pred -ccCEEEEc----CCChHHHHHHHHHHhCCCcEEEEEcC--CHH------HHHHHHHHHHhcCccchh
Confidence 79998854 34889999999999999999999642 111 124445667788886655
No 153
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.53 E-value=4.5e-07 Score=81.96 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCEEEEEcCcccH--HH--HHhc---------cceEEEeccC--------------------------------------
Q 022592 142 SLVIADFGCGDAR--LA--KSVK---------NKVFSFDLVS-------------------------------------- 170 (294)
Q Consensus 142 ~~~VLDiGcG~G~--~~--~~l~---------~~v~gvD~s~-------------------------------------- 170 (294)
..+|+..||++|. ++ ..+. -+|+|+|+|.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999996 22 2221 1589999997
Q ss_pred --------CCCcEEEccCCCCCCC-CCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEE
Q 022592 171 --------NDPSVIACDMSNTPLN-SSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 171 --------~~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~ 224 (294)
..+.|...|+.+.+++ .+.||+|+|..+|.|++ ...+++.+.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1234566677664433 57899999999999864 568999999999999998885
No 154
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.53 E-value=5e-07 Score=86.61 Aligned_cols=116 Identities=26% Similarity=0.383 Sum_probs=76.3
Q ss_pred cHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccC---CCCEEEEEcCcccHHHHHhc---------cce
Q 022592 96 GKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHS---PSLVIADFGCGDARLAKSVK---------NKV 163 (294)
Q Consensus 96 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~VLDiGcG~G~~~~~l~---------~~v 163 (294)
.....+.|..++-.|+.|.+.... .+.+...... .+..|||||||+|.++...+ .+|
T Consensus 149 ~s~tYe~fE~D~vKY~~Ye~AI~~-----------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~V 217 (448)
T PF05185_consen 149 ESQTYEVFEKDPVKYDQYERAIEE-----------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKV 217 (448)
T ss_dssp -HHHHHHHCC-HHHHHHHHHHHHH-----------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEE
T ss_pred ccccHhhHhcCHHHHHHHHHHHHH-----------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEE
Confidence 344567888888888888764322 2233333221 24689999999999875432 389
Q ss_pred EEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccccC---CCHHHHHHHHHHhcCcCcEEEE
Q 022592 164 FSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG---INFPNYLQEAQRVLKPSGWLLI 223 (294)
Q Consensus 164 ~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~---~~~~~~l~el~r~LkpgG~l~i 223 (294)
++|+-++ +.++++.+|++++..+. .+|+||+-..=.+ .-..+.|..+.|.|+|||+++=
T Consensus 218 yAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 218 YAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp EEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 9999887 47889999999988754 7999997433222 2345788999999999987764
No 155
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.51 E-value=4.6e-07 Score=91.81 Aligned_cols=108 Identities=13% Similarity=0.161 Sum_probs=77.3
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC-----------------CCCcEEEccCCCCC-CCCCCccEEEEccc
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTP-LNSSSVDVAVFCLS 198 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------------~~~~~~~~d~~~lp-~~~~~fD~Vi~~~~ 198 (294)
.+.+|||+|||+|.++..++ ..|+++|+|+ .++.++.+|+.+.. -..++||+|++..-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 46799999999999998887 2699999997 14678888876521 11468999998643
Q ss_pred ccC------------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 199 LMG------------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 199 l~~------------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
... .+...++..+.++|+|||.+++..-...+ + ...+++.++|+.+..+.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~-------~--~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF-------K--MDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC-------C--hhHHHHHhCCCeEEEEe
Confidence 211 13457888899999999999886422211 1 22677888998876643
No 156
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.51 E-value=4.8e-07 Score=77.67 Aligned_cols=93 Identities=9% Similarity=0.093 Sum_probs=63.6
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHH-hc---cceEEEeccC---------------CCCcEEEccCCC-CCCCCCCcc
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKS-VK---NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSVD 191 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~-l~---~~v~gvD~s~---------------~~~~~~~~d~~~-lp~~~~~fD 191 (294)
++..+.....+.+|||+|||+|.++.. ++ ..|+++|.++ .++.++.+|+.. ++....+||
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fD 123 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHN 123 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCce
Confidence 455554323567999999999999875 33 4899999987 246788888765 222245699
Q ss_pred EEEEcccccCCCHHHHHHHHHH--hcCcCcEEEEE
Q 022592 192 VAVFCLSLMGINFPNYLQEAQR--VLKPSGWLLIA 224 (294)
Q Consensus 192 ~Vi~~~~l~~~~~~~~l~el~r--~LkpgG~l~i~ 224 (294)
+|++...+..--...++..+.. +|.|+|++++.
T Consensus 124 lV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 124 VVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred EEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 9999877543233445555554 47898877775
No 157
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.49 E-value=3.5e-06 Score=75.16 Aligned_cols=139 Identities=14% Similarity=0.204 Sum_probs=95.9
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-------cceEEEeccCC---------------CC-cEEEccCCCC---CC
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVSN---------------DP-SVIACDMSNT---PL 185 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~~---------------~~-~~~~~d~~~l---p~ 185 (294)
.+..|.......+||||.||.|.+..... ..+...|.|+. ++ .|..+|+.+. .-
T Consensus 126 ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~ 205 (311)
T PF12147_consen 126 AIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA 205 (311)
T ss_pred HHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc
Confidence 33444433355699999999999877664 26788899982 33 7888888762 21
Q ss_pred CCCCccEEEEcccccCC-C---HHHHHHHHHHhcCcCcEEEEEe--ecCCC-------CCCCC-------CCCHHHHHHH
Q 022592 186 NSSSVDVAVFCLSLMGI-N---FPNYLQEAQRVLKPSGWLLIAE--VKSRF-------DPNTG-------GADPNKFSKA 245 (294)
Q Consensus 186 ~~~~fD~Vi~~~~l~~~-~---~~~~l~el~r~LkpgG~l~i~e--~~~~~-------~~~~~-------~~~~~~~~~~ 245 (294)
-+...++++.+..++.+ | ....+..+.+++.|||+|+.+. |++.. ..+.. ..+..++..+
T Consensus 206 l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~L 285 (311)
T PF12147_consen 206 LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQL 285 (311)
T ss_pred cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHH
Confidence 13457999999999875 3 3457889999999999999975 44321 11111 1488999999
Q ss_pred HHHCCCeEEEEe-ccCCeEEEEEEEE
Q 022592 246 VCDLGFAPVSKD-FSNKMFIMFYFKK 270 (294)
Q Consensus 246 l~~~Gf~~~~~~-~~~~~f~~i~~~k 270 (294)
++.+||+.+.+. ....-|++-.++|
T Consensus 286 v~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 286 VEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHcCCchhhheeccCCceEEEeecC
Confidence 999999877632 2344566666543
No 158
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.48 E-value=1.9e-06 Score=79.29 Aligned_cols=115 Identities=10% Similarity=0.111 Sum_probs=72.7
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCC-CCCCccEEEEcccccC
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG 201 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~-~~~~fD~Vi~~~~l~~ 201 (294)
++.+|||+|||+|.++..++ ..|+|+|+++ .+++++.+|+..+.. ..+.||+|++...-.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~- 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR- 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC-
Confidence 45799999999999999887 4899999997 257899999876532 235799999874421
Q ss_pred CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe-----ccCCeEEEEEE
Q 022592 202 INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD-----FSNKMFIMFYF 268 (294)
Q Consensus 202 ~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-----~~~~~f~~i~~ 268 (294)
.....+.++...+.|++.++++.-...+ ..++.. | .||++.... ....|..++..
T Consensus 252 -G~~~~~~~~l~~~~~~~ivyvsc~p~t~--------~rd~~~-l--~~y~~~~~~~~DmFP~T~HvE~v~~ 311 (315)
T PRK03522 252 -GIGKELCDYLSQMAPRFILYSSCNAQTM--------AKDLAH-L--PGYRIERVQLFDMFPHTAHYEVLTL 311 (315)
T ss_pred -CccHHHHHHHHHcCCCeEEEEECCcccc--------hhHHhh-c--cCcEEEEEEEeccCCCCCeEEEEEE
Confidence 1122333334447788777775322111 123333 3 589888733 34444444443
No 159
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.47 E-value=7.2e-07 Score=84.36 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=71.3
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------C--CCcEEEccCCCCC--C--CCCCccEEEE
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N--DPSVIACDMSNTP--L--NSSSVDVAVF 195 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~--~~~~~~~d~~~lp--~--~~~~fD~Vi~ 195 (294)
++.+|||+|||+|.++..++ ..|+++|+|+ . ++.++.+|+.+.. + ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 56799999999999887644 3899999997 1 4568888886632 1 2458999998
Q ss_pred cccccCC----------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592 196 CLSLMGI----------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL 249 (294)
Q Consensus 196 ~~~l~~~----------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~ 249 (294)
....... +...++..+.++|+|||.|+....... .+.+.+.+++.++
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-------~~~~~f~~~v~~a 356 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL-------MTSDLFQKIIADA 356 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-------CCHHHHHHHHHHH
Confidence 7554322 234556678899999999998653222 2456666655443
No 160
>PRK03612 spermidine synthase; Provisional
Probab=98.46 E-value=6.8e-07 Score=87.61 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=75.9
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------------CCCcEEEccCCC-CCCCCCCccE
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSN-TPLNSSSVDV 192 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------------~~~~~~~~d~~~-lp~~~~~fD~ 192 (294)
...+|||||||+|..+..+. .+++++|+++ ++++++.+|... +....++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 44689999999999888765 3789999976 245667777765 2223468999
Q ss_pred EEEcccccCC------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeE
Q 022592 193 AVFCLSLMGI------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAP 253 (294)
Q Consensus 193 Vi~~~~l~~~------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 253 (294)
|++....... -..++++.+.++|+|||.+++......+. .-...++.+.+++.||.+
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCEE
Confidence 9998554321 12468999999999999988853221111 112356788899999933
No 161
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.43 E-value=3.3e-06 Score=72.94 Aligned_cols=129 Identities=18% Similarity=0.166 Sum_probs=87.4
Q ss_pred cHHHHHHHHhhcc--CCCCEEEEEcCcccHHHHHhc---c-ceEEEeccC-----------------CCCcEEEccCCCC
Q 022592 127 LPVNIIVKWLKDH--SPSLVIADFGCGDARLAKSVK---N-KVFSFDLVS-----------------NDPSVIACDMSNT 183 (294)
Q Consensus 127 ~~~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~l~---~-~v~gvD~s~-----------------~~~~~~~~d~~~l 183 (294)
+|+...+..+..- ..+.+|||.+.|-|+.+.... + .|+.++-.+ ..+.++.+|+.++
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence 4455555554433 247899999999999988775 2 666666544 2567888888663
Q ss_pred --CCCCCCccEEEEccc---ccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCC-CHHHHHHHHHHCCCeEEEE
Q 022592 184 --PLNSSSVDVAVFCLS---LMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGA-DPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 184 --p~~~~~fD~Vi~~~~---l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~-~~~~~~~~l~~~Gf~~~~~ 256 (294)
.|+|++||+|+.... +.. .--.++.+|++|+|+|||.++-+.=++ .....+. -...+.+.|+++||.++..
T Consensus 198 V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P--g~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 198 VKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP--GKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred HhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC--CcccccCChhHHHHHHHHhcCceeeee
Confidence 478999999986322 111 123589999999999999999864221 1111122 2367899999999998774
Q ss_pred e
Q 022592 257 D 257 (294)
Q Consensus 257 ~ 257 (294)
.
T Consensus 276 ~ 276 (287)
T COG2521 276 V 276 (287)
T ss_pred e
Confidence 3
No 162
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.43 E-value=1e-06 Score=78.00 Aligned_cols=113 Identities=19% Similarity=0.340 Sum_probs=78.9
Q ss_pred HHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCC--
Q 022592 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLN-- 186 (294)
Q Consensus 131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~-- 186 (294)
.++..+.-. |+.+|||.|.|+|.++..|+ ++|+.+|+.+ .++.+...|+....+.
T Consensus 31 ~I~~~l~i~-pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLDIR-PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcCCC-CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 355555554 89999999999999998887 4899999886 4678889998654442
Q ss_pred -CCCccEEEEcccccCCCHHHHHHHHHHhc-CcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592 187 -SSSVDVAVFCLSLMGINFPNYLQEAQRVL-KPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 187 -~~~fD~Vi~~~~l~~~~~~~~l~el~r~L-kpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
+..+|.|+... .+|-.+|..+.++| +|||.+.+.. +... ........|++.||..+++
T Consensus 110 ~~~~~DavfLDl----p~Pw~~i~~~~~~L~~~gG~i~~fs--P~ie------Qv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 110 LESDFDAVFLDL----PDPWEAIPHAKRALKKPGGRICCFS--PCIE------QVQKTVEALREHGFTDIET 169 (247)
T ss_dssp -TTSEEEEEEES----SSGGGGHHHHHHHE-EEEEEEEEEE--SSHH------HHHHHHHHHHHTTEEEEEE
T ss_pred ccCcccEEEEeC----CCHHHHHHHHHHHHhcCCceEEEEC--CCHH------HHHHHHHHHHHCCCeeeEE
Confidence 35799988643 47889999999999 8999999863 1111 1234457788899987763
No 163
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.38 E-value=1.2e-06 Score=78.72 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=59.7
Q ss_pred CCEEEEEcCcccHHHHHhc-----cceEEEeccCC-------------------CCcEEEccCCC-CCCCCCCccEEEEc
Q 022592 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------------------DPSVIACDMSN-TPLNSSSVDVAVFC 196 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~-------------------~~~~~~~d~~~-lp~~~~~fD~Vi~~ 196 (294)
+.+||+||||+|.++..+. ..++++|+++. +++++.+|... +.-..++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 3499999999999887764 36899998861 34455555433 22224689999987
Q ss_pred ccccC-C--C--HHHHHHHHHHhcCcCcEEEEE
Q 022592 197 LSLMG-I--N--FPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 197 ~~l~~-~--~--~~~~l~el~r~LkpgG~l~i~ 224 (294)
..... . + ...+++.+.++|+|||.+++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65322 1 1 468899999999999999985
No 164
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.3e-05 Score=68.60 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEccCCCCC--------CCCCCccEEEEccccc-
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVAVFCLSLM- 200 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~d~~~lp--------~~~~~fD~Vi~~~~l~- 200 (294)
.++..|+|||+-+|.|++.++ ..|+|+|+-+ +++.++.+|+...+ +....+|+|++-.+-.
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~ 123 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNT 123 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCc
Confidence 567899999999999999886 2499999988 67899999997744 3345579999755441
Q ss_pred ---C-CC-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 201 ---G-IN-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 201 ---~-~~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
+ .| ...++.-+..+|+|||.+++-.+...- .+.+.+.+++ .|+.+.
T Consensus 124 ~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~--------~~~~l~~~~~-~F~~v~ 180 (205)
T COG0293 124 SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED--------FEDLLKALRR-LFRKVK 180 (205)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC--------HHHHHHHHHH-hhceeE
Confidence 1 12 234566677899999999998766433 3666666665 466666
No 165
>PLN02366 spermidine synthase
Probab=98.36 E-value=1.6e-06 Score=79.35 Aligned_cols=127 Identities=10% Similarity=0.043 Sum_probs=79.4
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCCC-C-CCCCCccEEE
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT-P-LNSSSVDVAV 194 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~l-p-~~~~~fD~Vi 194 (294)
...+||+||||.|..+..++ .+|+.+|+.+ +++.++.+|.... . .+.+.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 45689999999999988886 2678888776 2567788886432 1 2356899999
Q ss_pred EcccccCC-----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE------eccCCeE
Q 022592 195 FCLSLMGI-----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK------DFSNKMF 263 (294)
Q Consensus 195 ~~~~l~~~-----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~------~~~~~~f 263 (294)
+...-.+. --..+++.+.++|+|||.+++-. .+.+.. ......+.+.+.+.....+.. .+....+
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~-~s~~~~---~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w 246 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA-ESMWLH---MDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVI 246 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc-CCcccc---hHHHHHHHHHHHHHCCCceeEEEecCCCcCCCce
Confidence 86544321 13478999999999999987632 111111 112244556666664344432 1222446
Q ss_pred EEEEEEEC
Q 022592 264 IMFYFKKK 271 (294)
Q Consensus 264 ~~i~~~k~ 271 (294)
.+.++.+.
T Consensus 247 ~f~~as~~ 254 (308)
T PLN02366 247 GFVLCSKE 254 (308)
T ss_pred EEEEEECC
Confidence 66666553
No 166
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.36 E-value=3.8e-06 Score=80.49 Aligned_cols=107 Identities=17% Similarity=0.257 Sum_probs=72.5
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCC----CCCCCCccEEEEccc
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNT----PLNSSSVDVAVFCLS 198 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~l----p~~~~~fD~Vi~~~~ 198 (294)
++.+|||+|||+|.++..++ ..|+|+|+++ .++.++.+|+... ++.+.+||+|++...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence 45699999999999999887 4899999997 3678899998652 233567999997543
Q ss_pred ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592 199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 258 (294)
=.. -...+++.+.+ ++|++.++++- ++ -+...-...|...||++..+..
T Consensus 372 r~G-~~~~~l~~l~~-l~~~~ivyvsc-----~p----~tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 372 RKG-CAAEVLRTIIE-LKPERIVYVSC-----NP----ATLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred CCC-CCHHHHHHHHh-cCCCEEEEEcC-----CH----HHHHHHHHHHHHCCeeEEEEEE
Confidence 111 12456665554 88988777742 11 1222334567788998877443
No 167
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.34 E-value=8.5e-06 Score=74.68 Aligned_cols=115 Identities=23% Similarity=0.306 Sum_probs=85.3
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC---------------CCcEE-EccCCCCCCCCCC
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------DPSVI-ACDMSNTPLNSSS 189 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---------------~~~~~-~~d~~~lp~~~~~ 189 (294)
+.+++-.|....++..|||-=||||.++..+. ..++|.|+... ...+. .+|+..+|+++.+
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCc
Confidence 44555555655678899999999999988775 59999999871 22233 3499999999989
Q ss_pred ccEEEEcccccC------CC----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592 190 VDVAVFCLSLMG------IN----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 190 fD~Vi~~~~l~~------~~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
+|.|++-...-- .. ...+++.+.++|++||++++.-.. .....+...||.++..
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-------------~~~~~~~~~~f~v~~~ 328 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-------------DPRHELEELGFKVLGR 328 (347)
T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC-------------cchhhHhhcCceEEEE
Confidence 999997655432 11 468999999999999999986431 1123477889999873
No 168
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=1.2e-06 Score=75.96 Aligned_cols=112 Identities=15% Similarity=0.270 Sum_probs=73.0
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccCC--------------------------------------------
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------------------------------------------- 171 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~~-------------------------------------------- 171 (294)
.+..+|||||.+|.++..++ ..|.|+||.+.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 44689999999999999887 47899999861
Q ss_pred ------CCc-------EEEccCCCCCCCCCCccEEEEcccccC--CC-----HHHHHHHHHHhcCcCcEEEEEeecCC--
Q 022592 172 ------DPS-------VIACDMSNTPLNSSSVDVAVFCLSLMG--IN-----FPNYLQEAQRVLKPSGWLLIAEVKSR-- 229 (294)
Q Consensus 172 ------~~~-------~~~~d~~~lp~~~~~fD~Vi~~~~l~~--~~-----~~~~l~el~r~LkpgG~l~i~e~~~~-- 229 (294)
++. +...|+. .+....||+|+|--+-.| .+ ...+++.++++|.|||+|++- ...+
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-PQpWks 214 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-PQPWKS 214 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc-CCchHH
Confidence 000 0111111 223457999887655554 22 468999999999999999984 2211
Q ss_pred ----------C--CCCCCCCCHHHHHHHHHHC--CCeEEE
Q 022592 230 ----------F--DPNTGGADPNKFSKAVCDL--GFAPVS 255 (294)
Q Consensus 230 ----------~--~~~~~~~~~~~~~~~l~~~--Gf~~~~ 255 (294)
+ ......+.++.+..++.+. ||+-++
T Consensus 215 Y~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 215 YKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred HHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 0 1111125778888888776 565544
No 169
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.32 E-value=4.9e-06 Score=74.38 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCEEEEEcCcccH--HHHHh--c----------cceEEEeccC-------------------------------------
Q 022592 142 SLVIADFGCGDAR--LAKSV--K----------NKVFSFDLVS------------------------------------- 170 (294)
Q Consensus 142 ~~~VLDiGcG~G~--~~~~l--~----------~~v~gvD~s~------------------------------------- 170 (294)
..+|+-+||+||. ++.++ . -.++|.|++.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999996 33322 1 1678999986
Q ss_pred -------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEE
Q 022592 171 -------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 171 -------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~ 224 (294)
..+.|...|+..-++..+.||+|+|..||.++| ...++..++..|+|||.|++.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 144566777766553456799999999999875 458999999999999999996
No 170
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.7e-05 Score=66.62 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=72.3
Q ss_pred CCCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
..+..|+|+|||||.++...+ ..|+|+|+.+ .++.++++|+.... ..+|.|+++..+--
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 356689999999999887665 5899999987 26789999998875 45889898877653
Q ss_pred ----CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592 202 ----INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 202 ----~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
.| ..++..+.+.. =+++.++..- +.+-+.+....+|+.++..
T Consensus 121 ~~rhaD-r~Fl~~Ale~s-----~vVYsiH~a~-------~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 121 QRRHAD-RPFLLKALEIS-----DVVYSIHKAG-------SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred ccccCC-HHHHHHHHHhh-----heEEEeeccc-------cHHHHHHHHHhcCCeEEEE
Confidence 23 34555555543 1333333322 5678889999999988874
No 171
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.26 E-value=1.7e-05 Score=74.65 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=59.4
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCC-CCCCccEEEEcccccC
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG 201 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~-~~~~fD~Vi~~~~l~~ 201 (294)
++.+|||+|||+|.++..++ ..|+|+|+++ .++.++.+|+..... ...+||+|++...-..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 45689999999999998887 4799999997 256788888865321 1245999998755332
Q ss_pred CCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 202 INFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 202 ~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
.+ ..++..+. .++|++.++++-
T Consensus 313 ~~-~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 313 IG-KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred Cc-HHHHHHHH-hcCCCeEEEEEe
Confidence 22 34555554 479998888863
No 172
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.26 E-value=9.2e-07 Score=82.37 Aligned_cols=89 Identities=21% Similarity=0.335 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592 140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL 199 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l 199 (294)
.++..++|+|||.|....++. ..++|+|.++ ....++.+|+...|++++.||.+.+..+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 456689999999999888776 4889999887 23456889999999999999999999999
Q ss_pred cC-CCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 200 MG-INFPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 200 ~~-~~~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
.| .+...++.|++|+++|||.+++.++..
T Consensus 189 ~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 189 CHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred ccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 99 589999999999999999999986543
No 173
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.22 E-value=1e-05 Score=71.53 Aligned_cols=85 Identities=24% Similarity=0.321 Sum_probs=60.7
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCC-----CCCCCCCCccEEE
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMS-----NTPLNSSSVDVAV 194 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~-----~lp~~~~~fD~Vi 194 (294)
.+..|||+|||+|..+..++ ..|+++|.|+ .++.++..+++ ..+...+.+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 34579999999999988876 3899999998 23444433332 2445678999999
Q ss_pred EcccccCC-C--------------------------HHHHHHHHHHhcCcCcEEEEEe
Q 022592 195 FCLSLMGI-N--------------------------FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 195 ~~~~l~~~-~--------------------------~~~~l~el~r~LkpgG~l~i~e 225 (294)
++...-.. | ...++.-+.|+|+|||.+++.-
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 87655321 1 2356777889999999998853
No 174
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.21 E-value=3.6e-06 Score=73.56 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=67.1
Q ss_pred CEEEEEcCcccHHHHHhcc-----ceEEEeccC---------------CCCcEEEccCCCC---CCCCCCccEEEEcccc
Q 022592 143 LVIADFGCGDARLAKSVKN-----KVFSFDLVS---------------NDPSVIACDMSNT---PLNSSSVDVAVFCLSL 199 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~---------------~~~~~~~~d~~~l---p~~~~~fD~Vi~~~~l 199 (294)
..+||||||.|.++..+|. .++|+++.. .|+.+++.|+..+ -+++++.|-|..++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 4899999999999998882 789999886 2778888888653 2456699999988776
Q ss_pred cCC---------CHHHHHHHHHHhcCcCcEEEEEe
Q 022592 200 MGI---------NFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 200 ~~~---------~~~~~l~el~r~LkpgG~l~i~e 225 (294)
-|. -...++..+.++|+|||.|.+..
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 553 13589999999999999999974
No 175
>PLN02476 O-methyltransferase
Probab=98.21 E-value=5.9e-06 Score=74.28 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=71.0
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC-
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP- 184 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp- 184 (294)
...++..+.......+|||||+|+|..+.+++ ..++.+|.++ +++.++.+|+.+ ++
T Consensus 106 ~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 106 QAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence 34456666555456799999999999888776 2689999987 367788888754 22
Q ss_pred C----CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 185 L----NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 185 ~----~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
+ ..++||+|+.... -.+...++..+.++|+|||.+++-.
T Consensus 186 l~~~~~~~~FD~VFIDa~--K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDAD--KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred HHhcccCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 1 1368999987643 2356788999999999999988854
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.17 E-value=1e-05 Score=72.30 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=54.4
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCccE
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDV 192 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD~ 192 (294)
++.+++.+... ++..|||||||+|.++..++ ..|+|+|+++ .++.++.+|+..++++ .||.
T Consensus 18 ~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~ 94 (258)
T PRK14896 18 VDRIVEYAEDT-DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNK 94 (258)
T ss_pred HHHHHHhcCCC-CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceE
Confidence 34455555433 56799999999999998887 4799999986 3578899999888765 4899
Q ss_pred EEEcccccC
Q 022592 193 AVFCLSLMG 201 (294)
Q Consensus 193 Vi~~~~l~~ 201 (294)
|+++..++.
T Consensus 95 Vv~NlPy~i 103 (258)
T PRK14896 95 VVSNLPYQI 103 (258)
T ss_pred EEEcCCccc
Confidence 999877554
No 177
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.16 E-value=6.2e-06 Score=69.24 Aligned_cols=86 Identities=23% Similarity=0.256 Sum_probs=54.6
Q ss_pred CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-----------------CCCcEEEccCCC-C---CCCCCCccEE
Q 022592 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------------NDPSVIACDMSN-T---PLNSSSVDVA 193 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-----------------~~~~~~~~d~~~-l---p~~~~~fD~V 193 (294)
..+.+|||||||+|..+..++ ..|+..|..+ .++.+...|-.+ . .+...+||+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 356799999999998776654 4789999876 122333333222 1 1234579999
Q ss_pred EEcccccCC-CHHHHHHHHHHhcCcCcEEEEEe
Q 022592 194 VFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 194 i~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e 225 (294)
+.+.+++.. ....++..+.++|+|+|.++++.
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999984 67789999999999999866654
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.15 E-value=4.6e-06 Score=75.09 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=53.0
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC------------CCCcEEEccCCCCCCCCCCccEE
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVA 193 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------~~~~~~~~d~~~lp~~~~~fD~V 193 (294)
.+.+++.+... ++.+|||||||+|.++..++ .+|+|+|+++ .+++++.+|+..+++++-.+|.|
T Consensus 31 ~~~i~~~l~~~-~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 31 LDKIVDAAGPQ-PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred HHHHHHhcCCC-CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceE
Confidence 34455555433 56799999999999998887 3799999998 36788999999887654335888
Q ss_pred EEcccc
Q 022592 194 VFCLSL 199 (294)
Q Consensus 194 i~~~~l 199 (294)
+++...
T Consensus 110 v~NlPY 115 (272)
T PRK00274 110 VANLPY 115 (272)
T ss_pred EEeCCc
Confidence 887553
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.14 E-value=6e-06 Score=80.62 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=75.8
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCC--CCCCCCccEEEEccc
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLS 198 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~l--p~~~~~fD~Vi~~~~ 198 (294)
....+||||||.|.++..++ ..++|+|+.. .|+.++..|+..+ -++++++|.|+..+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 34589999999999999887 3789999987 3566676666432 267889999998877
Q ss_pred ccCC---------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC-CeEE
Q 022592 199 LMGI---------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG-FAPV 254 (294)
Q Consensus 199 l~~~---------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~ 254 (294)
--|+ --..++..+.++|+|||.+.+..-...+ .+.+...+.+.+ |+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y--------~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY--------FYEAIELIQQNGNFEII 484 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH--------HHHHHHHHHhCCCeEec
Confidence 6653 1358999999999999999986421111 133455566665 6654
No 180
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.12 E-value=3.4e-06 Score=72.75 Aligned_cols=92 Identities=16% Similarity=0.254 Sum_probs=67.4
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC----
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP---- 184 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp---- 184 (294)
++..+.......+||||||++|+-+.+++ .+++.+|+++ ++++++.+|+.+ ++
T Consensus 36 lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~ 115 (205)
T PF01596_consen 36 LLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN 115 (205)
T ss_dssp HHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence 44444433245699999999999888886 3899999987 367888888754 22
Q ss_pred -CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 185 -LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 185 -~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
...++||+|+.... -.+....+..+.++|+|||.+++-.
T Consensus 116 ~~~~~~fD~VFiDa~--K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 116 DGEEGQFDFVFIDAD--KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp TTTTTSEEEEEEEST--GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred ccCCCceeEEEEccc--ccchhhHHHHHhhhccCCeEEEEcc
Confidence 11357999997653 2366788889999999999999964
No 181
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.10 E-value=2.1e-05 Score=61.69 Aligned_cols=84 Identities=29% Similarity=0.475 Sum_probs=63.3
Q ss_pred EEEEcCcccHH--HHHhcc---ceEEEeccCC--------C-------CcEEEccCCC--CCCCC-CCccEEEEcccccC
Q 022592 145 IADFGCGDARL--AKSVKN---KVFSFDLVSN--------D-------PSVIACDMSN--TPLNS-SSVDVAVFCLSLMG 201 (294)
Q Consensus 145 VLDiGcG~G~~--~~~l~~---~v~gvD~s~~--------~-------~~~~~~d~~~--lp~~~-~~fD~Vi~~~~l~~ 201 (294)
++|+|||+|.. ...+.. .++|+|++.. . +.+...|... +++.. ..||++.+...+++
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 131 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHL 131 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhc
Confidence 99999999984 444433 6888999871 1 3677777776 77776 48999944444445
Q ss_pred CCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 202 INFPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 202 ~~~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
.+....+.++.++|+|+|.+++.....
T Consensus 132 ~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 132 LPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 567899999999999999999986543
No 182
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.07 E-value=1.2e-06 Score=74.27 Aligned_cols=114 Identities=17% Similarity=0.229 Sum_probs=77.9
Q ss_pred CCEEEEEcCcccHHHHHhc---cceEEEeccCC---CC---cEEEccCCCCCCCCCCccEEEEccccc-CCCHHHHHHHH
Q 022592 142 SLVIADFGCGDARLAKSVK---NKVFSFDLVSN---DP---SVIACDMSNTPLNSSSVDVAVFCLSLM-GINFPNYLQEA 211 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~---~~---~~~~~d~~~lp~~~~~fD~Vi~~~~l~-~~~~~~~l~el 211 (294)
+.++||+|+|.|..+..++ .+|++.++|.. +. .+-+..+.+..-.+-+||+|.|...|. +.++-+.++.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di 192 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDI 192 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHHH
Confidence 3589999999999999887 47889998872 11 111111222222345699999988887 47999999999
Q ss_pred HHhcCc-CcEEEEEeecC---------CCCCCCC-------CC----CHHHHHHHHHHCCCeEEE
Q 022592 212 QRVLKP-SGWLLIAEVKS---------RFDPNTG-------GA----DPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 212 ~r~Lkp-gG~l~i~e~~~---------~~~~~~~-------~~----~~~~~~~~l~~~Gf~~~~ 255 (294)
..+|+| +|.++++-+.+ ...+..+ +. ....+.++|+++||.+..
T Consensus 193 ~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 193 HLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhh
Confidence 999999 89988863322 1111111 11 233566889999998876
No 183
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.07 E-value=2.6e-05 Score=67.65 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=71.5
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEE-ccCCC-CC
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIA-CDMSN-TP 184 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~-~d~~~-lp 184 (294)
.-.++..+.......+|||||.+.|+-+.+++ .+++.+|+++ +.+.++. +|..+ +.
T Consensus 47 ~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~ 126 (219)
T COG4122 47 TGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHH
Confidence 34456666655566799999999999988887 3789999988 2455666 46543 22
Q ss_pred -CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592 185 -LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK 227 (294)
Q Consensus 185 -~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~ 227 (294)
...++||+|+.-.. -.+.+.++..+.++|+|||.+++-.+.
T Consensus 127 ~~~~~~fDliFIDad--K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 127 RLLDGSFDLVFIDAD--KADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred hccCCCccEEEEeCC--hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 45689999986422 136789999999999999999996543
No 184
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.2e-05 Score=68.52 Aligned_cols=89 Identities=22% Similarity=0.322 Sum_probs=65.9
Q ss_pred HHHHhhc-cCCCCEEEEEcCcccHHHHHhc----c---ceEEEeccC-------------------------CCCcEEEc
Q 022592 132 IVKWLKD-HSPSLVIADFGCGDARLAKSVK----N---KVFSFDLVS-------------------------NDPSVIAC 178 (294)
Q Consensus 132 ~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~----~---~v~gvD~s~-------------------------~~~~~~~~ 178 (294)
++++|.. ..|+.+.||+|.|+|+++..++ + .++|+|.-+ .++.++++
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 4555542 2488999999999999876554 1 347777554 25568889
Q ss_pred cCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 179 DMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 179 d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
|.....-+..+||.|.+...- ....+++...|+|||.++|--
T Consensus 152 Dgr~g~~e~a~YDaIhvGAaa-----~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVGAAA-----SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CccccCCccCCcceEEEccCc-----cccHHHHHHhhccCCeEEEee
Confidence 998877778899999886442 456677888899999999953
No 185
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.05 E-value=6.7e-06 Score=74.46 Aligned_cols=83 Identities=22% Similarity=0.274 Sum_probs=61.9
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
.+..|||+|||+|.++...+ .+|++++.|. +++.++.+.++++.+| +..|+||+-..-.-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhh
Confidence 56789999999999887665 4899999887 5778889999998886 56999997433222
Q ss_pred -CCH--HHHHHHHHHhcCcCcEEEEE
Q 022592 202 -INF--PNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 202 -~~~--~~~l~el~r~LkpgG~l~i~ 224 (294)
.+. .+..-.+.+.|+|.|.++-.
T Consensus 256 L~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 221 23333456999999988753
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.05 E-value=2.8e-05 Score=66.27 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=56.8
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCC-C-C-CCC-CccEEEEc
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT-P-L-NSS-SVDVAVFC 196 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~l-p-~-~~~-~fD~Vi~~ 196 (294)
.+.+|||++||+|.++..++ ..|+++|.+. .++.++.+|+... . + ... .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 56799999999999988886 3799999987 2456788888442 2 1 122 47888876
Q ss_pred ccccCCCHHHHHHHHH--HhcCcCcEEEE
Q 022592 197 LSLMGINFPNYLQEAQ--RVLKPSGWLLI 223 (294)
Q Consensus 197 ~~l~~~~~~~~l~el~--r~LkpgG~l~i 223 (294)
..+........+..+. .+|+++|.+++
T Consensus 129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 129 PPFFNGALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred cCCCCCcHHHHHHHHHHCCCCCCCeEEEE
Confidence 6654433445555444 36778886665
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.02 E-value=2.6e-05 Score=69.46 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=50.9
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCCCcc-
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD- 191 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~~fD- 191 (294)
...+++.+... ++.+|||||||+|.++..++ ..|+++|+++ .++.++.+|+..++++ .+|
T Consensus 18 ~~~i~~~~~~~-~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~ 94 (253)
T TIGR00755 18 IQKIVEAANVL-EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPK 94 (253)
T ss_pred HHHHHHhcCCC-CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCC
Confidence 34456555443 56799999999999999887 4799999987 3567889999888865 466
Q ss_pred --EEEEcccc
Q 022592 192 --VAVFCLSL 199 (294)
Q Consensus 192 --~Vi~~~~l 199 (294)
+|+++..+
T Consensus 95 ~~~vvsNlPy 104 (253)
T TIGR00755 95 QLKVVSNLPY 104 (253)
T ss_pred cceEEEcCCh
Confidence 77766543
No 188
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.00 E-value=1.5e-05 Score=70.64 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=69.2
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC-
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP- 184 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp- 184 (294)
...++..+.......+|||||+++|+-+.+++ .+++.+|.++ ++++++.+|+.+ ++
T Consensus 67 ~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 67 EGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHH
Confidence 34455555554355699999999999887775 3799999987 467788887755 22
Q ss_pred C-----CCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 185 L-----NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 185 ~-----~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
+ ..++||+|+.-.. .......+..+.++|+|||.+++-.
T Consensus 147 l~~~~~~~~~fD~iFiDad--K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDAD--KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHhccccCCcccEEEecCC--HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1 1368999987644 2356788888899999999988743
No 189
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.96 E-value=1.3e-05 Score=67.59 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=65.5
Q ss_pred CCCEEEEEcCcccHHHHHhc------cceEEEeccCC----CCcEEEccCCCCC--------C--CCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSN----DPSVIACDMSNTP--------L--NSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~----~~~~~~~d~~~lp--------~--~~~~fD~Vi~~~~l~ 200 (294)
.+.+|||+||++|.|+..+. ..|+|+|+.+. .+.++.+|+.+.. + ....||+|++..+..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN 102 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence 34799999999999998886 37899999974 4455555653311 1 126899999987544
Q ss_pred CC-----C-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 201 GI-----N-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 201 ~~-----~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.. + ....+.-+...|+|||.+++--+.... . ..+...+.. .|+.+.
T Consensus 103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~-------~-~~~~~~l~~-~F~~v~ 160 (181)
T PF01728_consen 103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE-------I-EELIYLLKR-CFSKVK 160 (181)
T ss_dssp --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT-------S-HHHHHHHHH-HHHHEE
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc-------H-HHHHHHHHh-CCeEEE
Confidence 31 2 124455666789999999886554211 2 466666665 565544
No 190
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.94 E-value=0.00059 Score=62.76 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=55.4
Q ss_pred CCCEEEEEcCcccHHHHHhc---------cceEEEeccC---------------CCCcE--EEccCCC----CCC--CCC
Q 022592 141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVS---------------NDPSV--IACDMSN----TPL--NSS 188 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~---------------~~~~~--~~~d~~~----lp~--~~~ 188 (294)
++..|+|+|||+|.=+..|. ..++++|+|. +.+.+ +++|..+ ++- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 55689999999998544332 2588999997 12333 5566544 221 123
Q ss_pred CccEEEEcc-cccCCCHH---HHHHHHHH-hcCcCcEEEEE
Q 022592 189 SVDVAVFCL-SLMGINFP---NYLQEAQR-VLKPSGWLLIA 224 (294)
Q Consensus 189 ~fD~Vi~~~-~l~~~~~~---~~l~el~r-~LkpgG~l~i~ 224 (294)
...+|++.. ++..+++. .+|+.+.+ .|.|||.|+|.
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 356766655 45555544 67888899 99999999995
No 191
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.92 E-value=7.3e-05 Score=61.55 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=74.9
Q ss_pred HHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------CCCcEEEccCCCCC-----CCCCC
Q 022592 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------NDPSVIACDMSNTP-----LNSSS 189 (294)
Q Consensus 131 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------~~~~~~~~d~~~lp-----~~~~~ 189 (294)
.+...+... .+.-|||+|.|+|-++..+. ..+++++.|+ +.+.++.+|+.++. ..+..
T Consensus 39 ~M~s~I~pe-sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 39 KMASVIDPE-SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred HHHhccCcc-cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCe
Confidence 344444443 56689999999999999886 3788999887 46778888887754 45677
Q ss_pred ccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeec
Q 022592 190 VDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVK 227 (294)
Q Consensus 190 fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~ 227 (294)
||.|+|+.-+-.+. ..+.++.+...|.+||.++.....
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 99999998887653 347899999999999999987654
No 192
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.92 E-value=0.00011 Score=70.29 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=92.1
Q ss_pred HHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhcc-ceEEEeccCC---C-Cc-
Q 022592 101 DYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-KVFSFDLVSN---D-PS- 174 (294)
Q Consensus 101 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-~v~gvD~s~~---~-~~- 174 (294)
+.|.++...|......|..... ..+. ...-..|+|..+|.|.|+.+|.. .|+.+...+. + ..
T Consensus 337 e~F~~Dt~~Wk~~V~~Y~~l~~-----------~~i~-~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v 404 (506)
T PF03141_consen 337 EEFKEDTKHWKKRVSHYKKLLG-----------LAIK-WGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV 404 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-----------cccc-ccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchh
Confidence 4566777777776655543221 0111 11123699999999999999984 4555554441 1 11
Q ss_pred --------EEEccCCCCCCCCCCccEEEEcccccC----CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH
Q 022592 175 --------VIACDMSNTPLNSSSVDVAVFCLSLMG----INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF 242 (294)
Q Consensus 175 --------~~~~d~~~lp~~~~~fD~Vi~~~~l~~----~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~ 242 (294)
....=.+.++.-+.+||+|.+...+.. .+...++-|+.|+|+|||.++|-|-.. ....+
T Consensus 405 IydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~---------vl~~v 475 (506)
T PF03141_consen 405 IYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD---------VLEKV 475 (506)
T ss_pred hhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH---------HHHHH
Confidence 111112345555789999999988875 377899999999999999999976321 33678
Q ss_pred HHHHHHCCCeEEEEeccC
Q 022592 243 SKAVCDLGFAPVSKDFSN 260 (294)
Q Consensus 243 ~~~l~~~Gf~~~~~~~~~ 260 (294)
..++....|+....+...
T Consensus 476 ~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 476 KKIAKSLRWEVRIHDTED 493 (506)
T ss_pred HHHHHhCcceEEEEecCC
Confidence 888999999887765544
No 193
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=0.00011 Score=66.14 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=52.0
Q ss_pred CCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCC--------CCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 188 SSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN--------TGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~--------~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
++||+|+.++-+-- .+....|..+..+|+|||+.+-....-..... .-.++.+++..+++..||+++...
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 57999998866654 47889999999999999988765321111111 123688999999999999998744
No 194
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.89 E-value=5.4e-05 Score=63.89 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=73.4
Q ss_pred hhccCCCCEEEEEcCcccHHHHHhc---c--c---------eEEEeccC----------------CCCcEEEccCCCCCC
Q 022592 136 LKDHSPSLVIADFGCGDARLAKSVK---N--K---------VFSFDLVS----------------NDPSVIACDMSNTPL 185 (294)
Q Consensus 136 l~~~~~~~~VLDiGcG~G~~~~~l~---~--~---------v~gvD~s~----------------~~~~~~~~d~~~lp~ 185 (294)
+....++..|||--||+|.++...+ . . ++|+|+++ ..+.+...|+..+++
T Consensus 23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL 102 (179)
T ss_dssp HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence 3333467799999999999987664 2 3 67999987 245688889999998
Q ss_pred CCCCccEEEEcccccCC-C--------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592 186 NSSSVDVAVFCLSLMGI-N--------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 186 ~~~~fD~Vi~~~~l~~~-~--------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
.++++|+|+++.-.-.- . ...+++++.++|++...+++.. ...+.+.+...++.....
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~-------------~~~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS-------------NRELEKALGLKGWRKRKL 169 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES-------------CCCHHHHHTSTTSEEEEE
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------------CHHHHHHhcchhhceEEE
Confidence 78899999998776541 1 2467899999999943333332 135667777778877765
Q ss_pred ecc
Q 022592 257 DFS 259 (294)
Q Consensus 257 ~~~ 259 (294)
...
T Consensus 170 ~~~ 172 (179)
T PF01170_consen 170 YNG 172 (179)
T ss_dssp EET
T ss_pred EEe
Confidence 443
No 195
>PRK04148 hypothetical protein; Provisional
Probab=97.87 E-value=8e-05 Score=59.61 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=57.4
Q ss_pred CCCEEEEEcCcccH-HHHHhc---cceEEEeccCC--------CCcEEEccCCCCCCC-CCCccEEEEcccccCCCHHHH
Q 022592 141 PSLVIADFGCGDAR-LAKSVK---NKVFSFDLVSN--------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGINFPNY 207 (294)
Q Consensus 141 ~~~~VLDiGcG~G~-~~~~l~---~~v~gvD~s~~--------~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~~~~~~ 207 (294)
.+.+|||||||+|. ++..|+ ..|+++|+++. .++++.+|+.+..+. -..+|+|.+... +.+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~el 90 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PRDL 90 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CHHH
Confidence 44689999999996 777776 48999999984 457899999876543 356899887643 3344
Q ss_pred HHHHHHhcCc-CcEEEEEeecC
Q 022592 208 LQEAQRVLKP-SGWLLIAEVKS 228 (294)
Q Consensus 208 l~el~r~Lkp-gG~l~i~e~~~ 228 (294)
..-+.++.+. |.-++|..+..
T Consensus 91 ~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 91 QPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred HHHHHHHHHHcCCCEEEEcCCC
Confidence 4444444433 55677765443
No 196
>PLN02823 spermine synthase
Probab=97.87 E-value=4.7e-05 Score=70.50 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=59.6
Q ss_pred CCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEEc
Q 022592 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVFC 196 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~ 196 (294)
..+||.||+|.|..+..+. .+++.||+.+ ++++++.+|... +....++||+|++.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 4589999999999888765 3688999887 355677777755 33345789999987
Q ss_pred ccccC-------CCHHHHHH-HHHHhcCcCcEEEE
Q 022592 197 LSLMG-------INFPNYLQ-EAQRVLKPSGWLLI 223 (294)
Q Consensus 197 ~~l~~-------~~~~~~l~-el~r~LkpgG~l~i 223 (294)
..-.. .--..+++ .+.+.|+|||++++
T Consensus 184 ~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 184 LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 42111 11246777 89999999999876
No 197
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.87 E-value=0.00021 Score=65.75 Aligned_cols=115 Identities=11% Similarity=0.090 Sum_probs=68.1
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------C-----CCcEEE-ccCCCCC----CCCCCccEE
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------N-----DPSVIA-CDMSNTP----LNSSSVDVA 193 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------~-----~~~~~~-~d~~~lp----~~~~~fD~V 193 (294)
...+|||||||+|.+...++ ..++|+|+++ . ++.+.. .|...+. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 34689999999997766554 3799999987 1 233332 2322221 245689999
Q ss_pred EEcccccCCC------HHHHHHH----------------HHHhcCcCcEEEEEeec-----------CCCCCCCC-CCCH
Q 022592 194 VFCLSLMGIN------FPNYLQE----------------AQRVLKPSGWLLIAEVK-----------SRFDPNTG-GADP 239 (294)
Q Consensus 194 i~~~~l~~~~------~~~~l~e----------------l~r~LkpgG~l~i~e~~-----------~~~~~~~~-~~~~ 239 (294)
+|+.-++-.. -..-.+. ..+++-+||.+-++.-. .+|....+ .-+.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l 273 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENL 273 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCH
Confidence 9998887521 1111222 23556678877665200 01111111 1378
Q ss_pred HHHHHHHHHCCCeEEE
Q 022592 240 NKFSKAVCDLGFAPVS 255 (294)
Q Consensus 240 ~~~~~~l~~~Gf~~~~ 255 (294)
..+.+.|++.|...+.
T Consensus 274 ~~l~~~L~~~~~~~~~ 289 (321)
T PRK11727 274 PPLYRALKKVGAVEVK 289 (321)
T ss_pred HHHHHHHHHcCCceEE
Confidence 8999999999984433
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.86 E-value=2.8e-05 Score=65.92 Aligned_cols=103 Identities=23% Similarity=0.246 Sum_probs=73.1
Q ss_pred EEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccCCC
Q 022592 144 VIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN 203 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~ 203 (294)
+++|||+|.|.=+..++ .+++.+|... .|+.++.+.+++ +.....||+|++..+ .+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---~~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---AP 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS---SS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh---cC
Confidence 79999999998555554 3799999876 578899998888 555688999999876 35
Q ss_pred HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
...++.-+...|++||.+++.-= .... -..++....+...|.+...+
T Consensus 127 l~~l~~~~~~~l~~~G~~l~~KG-~~~~-----~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 127 LDKLLELARPLLKPGGRLLAYKG-PDAE-----EELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEES-S--H-----HHHHTHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEcC-CChH-----HHHHHHHhHHHHhCCEEeee
Confidence 67888889999999999998631 1110 01234455666677766653
No 199
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.86 E-value=3.2e-05 Score=70.42 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=53.4
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCc
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV 190 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~f 190 (294)
..+++.+... ++..|||||||+|.++..++ ..|+++|+++ .++.++.+|+...+++ .|
T Consensus 26 ~~Iv~~~~~~-~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~ 102 (294)
T PTZ00338 26 DKIVEKAAIK-PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YF 102 (294)
T ss_pred HHHHHhcCCC-CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--cc
Confidence 4455554433 66799999999999988886 4799999986 2577899999876653 58
Q ss_pred cEEEEcccccCCC
Q 022592 191 DVAVFCLSLMGIN 203 (294)
Q Consensus 191 D~Vi~~~~l~~~~ 203 (294)
|+|+++...+...
T Consensus 103 d~VvaNlPY~Ist 115 (294)
T PTZ00338 103 DVCVANVPYQISS 115 (294)
T ss_pred CEEEecCCcccCc
Confidence 9999876665543
No 200
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=0.00013 Score=61.58 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=79.0
Q ss_pred CCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------------CCCcEEEccCCCCCCCCCCccEE
Q 022592 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------------NDPSVIACDMSNTPLNSSSVDVA 193 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------------~~~~~~~~d~~~lp~~~~~fD~V 193 (294)
++.+|+|+=-|.|+|+..++ ..|+++-..+ .|.+.+..++..++ +.+..|++
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~ 126 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLV 126 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCccccc
Confidence 78899999999999999887 3666654333 23344444444444 44556776
Q ss_pred EEccccc--C------CCHHHHHHHHHHhcCcCcEEEEEeecCCCCC------CCCCCCHHHHHHHHHHCCCeEEEE
Q 022592 194 VFCLSLM--G------INFPNYLQEAQRVLKPSGWLLIAEVKSRFDP------NTGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 194 i~~~~l~--~------~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~------~~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
+.....| | -....+.+++++.|||||.+++.|....-.. ....++...+....+.+||.....
T Consensus 127 ~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 127 PTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred ccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 6533332 2 1356889999999999999999875433211 223468889999999999988763
No 201
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.83 E-value=5e-05 Score=71.59 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=60.7
Q ss_pred CCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
+.+|||++||+|.++..++ ..|+++|+++ .++.+..+|+..+......||+|++...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 3589999999999998875 2799999997 2344777787553211456999998642
Q ss_pred CCHHHHHHHHHHhcCcCcEEEEE
Q 022592 202 INFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 202 ~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
-.+..++..+.+.+++||+++++
T Consensus 135 Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEE
Confidence 24467888888889999999997
No 202
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.72 E-value=0.00077 Score=62.03 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCcccHHHHHhc---cceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHH
Q 022592 140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL 208 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l 208 (294)
.++..+|||||++|.++..+. ..|++||..+ .++..+..|......+.+.+|+++|..+ ..|..+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---e~P~rva 286 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---EKPARVA 286 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc---cCHHHHH
Confidence 467899999999999999887 4899999876 4566666665443222567999998766 3567788
Q ss_pred HHHHHhcCcC
Q 022592 209 QEAQRVLKPS 218 (294)
Q Consensus 209 ~el~r~Lkpg 218 (294)
.-+..+|..|
T Consensus 287 ~lm~~Wl~~g 296 (357)
T PRK11760 287 ELMAQWLVNG 296 (357)
T ss_pred HHHHHHHhcC
Confidence 8888888776
No 203
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00067 Score=59.09 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=85.8
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccCCCCc-----------EEEccCCCCCCC--CCCccE
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPS-----------VIACDMSNTPLN--SSSVDV 192 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~~~-----------~~~~d~~~lp~~--~~~fD~ 192 (294)
..+++...-..++..+||||+-||.|+..+. ..|+|+|....+.+ +...|+..+... .+..|+
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe
Confidence 3355555555678899999999999988775 48999999874332 223344443211 236788
Q ss_pred EEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCC------C--------CCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592 193 AVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFD------P--------NTGGADPNKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 193 Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~------~--------~~~~~~~~~~~~~l~~~Gf~~~~~~~ 258 (294)
|++.-+ +.+...+|..+..+|+|+|.++.. +.+.|. . .........+.+++...||.+.....
T Consensus 148 ~v~DvS--FISL~~iLp~l~~l~~~~~~~v~L-vKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 148 IVIDVS--FISLKLILPALLLLLKDGGDLVLL-VKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred EEEEee--hhhHHHHHHHHHHhcCCCceEEEE-ecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEc
Confidence 888654 357788999999999999988875 222221 1 01112456788889999999988555
Q ss_pred c
Q 022592 259 S 259 (294)
Q Consensus 259 ~ 259 (294)
+
T Consensus 225 S 225 (245)
T COG1189 225 S 225 (245)
T ss_pred c
Confidence 3
No 204
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.71 E-value=0.00019 Score=69.37 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCCC-CCCCCccEEEEcc
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAVFCL 197 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~lp-~~~~~fD~Vi~~~ 197 (294)
.++.+|||++||+|.=+..++ ..++++|++. .++.+...|...++ ...+.||.|+...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 477899999999998666654 3799999997 34556667776542 2235799999432
Q ss_pred ccc----C-CCH------------------HHHHHHHHHhcCcCcEEEEEe
Q 022592 198 SLM----G-INF------------------PNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 198 ~l~----~-~~~------------------~~~l~el~r~LkpgG~l~i~e 225 (294)
.-. . -++ ...|..+.++|||||.|+.+.
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 221 1 111 467889999999999998874
No 205
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.68 E-value=4.3e-05 Score=65.85 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=55.6
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC------------------------CCCcEEEccC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------------------NDPSVIACDM 180 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~------------------------~~~~~~~~d~ 180 (294)
..+++.+... ++...+|||||.|......+ ...+|+++.+ ..+.+..+|+
T Consensus 32 ~~il~~~~l~-~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELNLT-PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhCCC-CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 3455555443 67799999999999876665 3689999987 2345667777
Q ss_pred CCCCCCC---CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEE
Q 022592 181 SNTPLNS---SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLI 223 (294)
Q Consensus 181 ~~lp~~~---~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i 223 (294)
.+.++.. ...|+|+++......+....|.++...||+|..++.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 6543211 346999988776544566777888888998877654
No 206
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=7.8e-05 Score=68.06 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=53.9
Q ss_pred CEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccC----CCCCCCCCCccEEEEcc
Q 022592 143 LVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDM----SNTPLNSSSVDVAVFCL 197 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~----~~lp~~~~~fD~Vi~~~ 197 (294)
.+|||+|.|+|..+.++. ..++.++.|+ ....+-..|+ ..+|. ...|++|+...
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~~~ 193 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIVLD 193 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhhhh
Confidence 479999999998766654 2344444444 1222222333 33332 34577777666
Q ss_pred cccCC----CHHHHHHHHHHhcCcCcEEEEEeec
Q 022592 198 SLMGI----NFPNYLQEAQRVLKPSGWLLIAEVK 227 (294)
Q Consensus 198 ~l~~~----~~~~~l~el~r~LkpgG~l~i~e~~ 227 (294)
-|-+. .....++.+..++.|||.|+|+|-.
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 66553 3456899999999999999999843
No 207
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.0012 Score=55.55 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEc-cCCCC--------CCCCCCccEEEEccccc
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIAC-DMSNT--------PLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~-d~~~l--------p~~~~~fD~Vi~~~~l~ 200 (294)
.|+.+|||+||.+|.|++... +.|.|||+-. +.+.++.+ |+.+. .+++-..|+|++...-.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapn 147 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPN 147 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCC
Confidence 578899999999999998775 3789999875 45556665 66552 15677899999765533
Q ss_pred CC-----CH-------HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 201 GI-----NF-------PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 201 ~~-----~~-------~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.+ |- ..++.-....++|+|.+++--|...- ...+...|.. -|+.++
T Consensus 148 aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e--------~~~l~r~l~~-~f~~Vk 205 (232)
T KOG4589|consen 148 ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE--------EALLQRRLQA-VFTNVK 205 (232)
T ss_pred CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc--------hHHHHHHHHH-HhhhcE
Confidence 21 21 23455556778999999997655432 2445555544 355554
No 208
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=2.7e-05 Score=63.18 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=53.7
Q ss_pred EEEEEcCcccHHHHHhccceEEEeccC-CCCcEEEccCCCCCCCCCCccEEEEcccccCC---CHHHHHHHHHHhcCcCc
Q 022592 144 VIADFGCGDARLAKSVKNKVFSFDLVS-NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPSG 219 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~~~v~gvD~s~-~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~---~~~~~l~el~r~LkpgG 219 (294)
-.+-||||.=.+.-- =.-+|.-. ..+.+++-.....+|.++++|+|++.++++|. .-..+++++.|+|||||
T Consensus 5 ~kv~ig~G~~r~npg----Wi~~d~ed~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G 80 (185)
T COG4627 5 EKVKIGAGGKRVNPG----WIITDVEDRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGG 80 (185)
T ss_pred eEEEEeccccccCCC----ceeeehhcccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCc
Confidence 467899996333210 01223222 12333333334578999999999999999995 55689999999999999
Q ss_pred EEEEEe
Q 022592 220 WLLIAE 225 (294)
Q Consensus 220 ~l~i~e 225 (294)
+|-|+-
T Consensus 81 ~LriAv 86 (185)
T COG4627 81 KLRIAV 86 (185)
T ss_pred EEEEEc
Confidence 999973
No 209
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.62 E-value=3.8e-05 Score=65.12 Aligned_cols=95 Identities=14% Similarity=0.143 Sum_probs=64.3
Q ss_pred HHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCC-CC---
Q 022592 130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSN-TP--- 184 (294)
Q Consensus 130 ~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~-lp--- 184 (294)
+.+...|... ..+.++||+-||+|.++.... ..|+.||.+. ..+.++..|+.. ++
T Consensus 30 ealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~ 109 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA 109 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH
T ss_pred HHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc
Confidence 3355555543 477899999999999988665 4899999987 235667777543 21
Q ss_pred CCCCCccEEEEcccccCCC-HHHHHHHHH--HhcCcCcEEEEE
Q 022592 185 LNSSSVDVAVFCLSLMGIN-FPNYLQEAQ--RVLKPSGWLLIA 224 (294)
Q Consensus 185 ~~~~~fD~Vi~~~~l~~~~-~~~~l~el~--r~LkpgG~l~i~ 224 (294)
.....||+|++........ ...++..+. .+|+++|.+++-
T Consensus 110 ~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 110 KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 2467899999987766655 377888887 789999987774
No 210
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=7.2e-05 Score=60.15 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=50.7
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
.+.+++|+|||.|.+..... ..|.|+|+.+ -++.+++||+.++-+..+.||.++.+.-+--
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 57789999999999886554 5899999998 2567899999988877788999998877753
No 211
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.60 E-value=0.00028 Score=63.59 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=62.8
Q ss_pred CCEEEEEcCcccHHHHHhc------cceEEEeccCCCCc----------E-----EEccCC--CCCCCCCCccEEEEccc
Q 022592 142 SLVIADFGCGDARLAKSVK------NKVFSFDLVSNDPS----------V-----IACDMS--NTPLNSSSVDVAVFCLS 198 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~~~~----------~-----~~~d~~--~lp~~~~~fD~Vi~~~~ 198 (294)
..+|||+|||+|..+-++. ..++++|.|+.... - ...++. ..++ ...|+|+++++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~~ 111 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASYV 111 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEehh
Confidence 3589999999998655443 37889999872110 0 001111 1122 23499999999
Q ss_pred ccCC---CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 199 LMGI---NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 199 l~~~---~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
|... ....+++.+.+.+.+ .|+|+|.....+ .-...+..+.|.+.|+.++.
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G----f~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG----FRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH----HHHHHHHHHHHhhCCCceEC
Confidence 9874 355677777777766 888887432211 01223444555555655554
No 212
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.59 E-value=0.00035 Score=65.80 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=69.9
Q ss_pred hhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC-----------------CCCcEEEccCCCCC----CCCCCc
Q 022592 136 LKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTP----LNSSSV 190 (294)
Q Consensus 136 l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------------~~~~~~~~d~~~lp----~~~~~f 190 (294)
+.....+.+|||+=|=||.++.+.+ .+|++||+|. ..+.++++|+...- -...+|
T Consensus 212 l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 212 LGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred HhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 3333357899999999999998887 3999999997 24578899886632 223589
Q ss_pred cEEEEcccccC----------CCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 191 DVAVFCLSLMG----------INFPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 191 D~Vi~~~~l~~----------~~~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
|+||+...-.. -+....+..+.++|+|||.++++.-..
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99998544332 145688999999999999999986443
No 213
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.59 E-value=0.001 Score=57.42 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=73.6
Q ss_pred EEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCC-CCCCCCCccEEEEcccccCC
Q 022592 145 IADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSN-TPLNSSSVDVAVFCLSLMGI 202 (294)
Q Consensus 145 VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~~~l~~~ 202 (294)
|+||||--|++..+|. ..++++|+++ +++++..+|-.. ++. .+..|.|+.+.+=- .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG-~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGG-E 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-H-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecCCH-H
Confidence 6899999999999997 3799999997 467788888543 432 23378888665411 1
Q ss_pred CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE---EeccCCeEEEEEEEECCcc
Q 022592 203 NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS---KDFSNKMFIMFYFKKKEKQ 274 (294)
Q Consensus 203 ~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~---~~~~~~~f~~i~~~k~~~~ 274 (294)
-....|.+....+.....|++.... ....+..+|.+.||.++. +......|.++.+.+....
T Consensus 79 lI~~ILe~~~~~~~~~~~lILqP~~----------~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~ 143 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQPNT----------HAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEK 143 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEEESS-----------HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS-
T ss_pred HHHHHHHhhHHHhccCCeEEEeCCC----------ChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCC
Confidence 2235555555666655566664321 458899999999999988 3344555666666665543
No 214
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.59 E-value=0.00082 Score=63.04 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=53.0
Q ss_pred CEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCC-C-CC--------------CC
Q 022592 143 LVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNT-P-LN--------------SS 188 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~l-p-~~--------------~~ 188 (294)
.+|||++||+|.++..++ ..|+|+|+++ .++.++.+|+... + +. ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 479999999999999887 4799999997 2567888888652 1 10 12
Q ss_pred CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
.||+|+....-.. -...++..+.+ |+++++++
T Consensus 288 ~~D~v~lDPPR~G-~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 288 NFSTIFVDPPRAG-LDDETLKLVQA---YERILYIS 319 (362)
T ss_pred CCCEEEECCCCCC-CcHHHHHHHHc---cCCEEEEE
Confidence 5899987654211 12344454443 67777775
No 215
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.58 E-value=0.00086 Score=62.70 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=52.2
Q ss_pred CEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCC-----------C-----CC
Q 022592 143 LVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL-----------N-----SS 188 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~-----------~-----~~ 188 (294)
.+|||+|||+|.++..++ ..|+|+|+++ .++.++.+|+..+.- . ..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 479999999999999887 4799999997 256788888765211 0 11
Q ss_pred CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
.||+|+.... ..--...++..+. +|+++++|+
T Consensus 279 ~~d~v~lDPP-R~G~~~~~l~~l~---~~~~ivYvs 310 (353)
T TIGR02143 279 NCSTIFVDPP-RAGLDPDTCKLVQ---AYERILYIS 310 (353)
T ss_pred CCCEEEECCC-CCCCcHHHHHHHH---cCCcEEEEE
Confidence 3788887544 1111234445444 477877775
No 216
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.56 E-value=0.00015 Score=62.29 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=55.3
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL 199 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l 199 (294)
++..|||+-||-|.++..++ ..|+++|+++ ..+..+.+|+..++. .+.+|-|++...-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp~ 179 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLPE 179 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--TS
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECChH
Confidence 67799999999999988876 3799999997 356788999988765 7889999886531
Q ss_pred cCCCHHHHHHHHHHhcCcCcEEE
Q 022592 200 MGINFPNYLQEAQRVLKPSGWLL 222 (294)
Q Consensus 200 ~~~~~~~~l~el~r~LkpgG~l~ 222 (294)
.-..+|..+.+++++||++-
T Consensus 180 ---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 ---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---SGGGGHHHHHHHEEEEEEEE
T ss_pred ---HHHHHHHHHHHHhcCCcEEE
Confidence 22468888999999999874
No 217
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00044 Score=62.43 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=61.8
Q ss_pred CEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCCCccEEEEcc
Q 022592 143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVFCL 197 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~~fD~Vi~~~ 197 (294)
.+||-||.|.|..++.+. .+++.||+.+ +++.++..|... +.-...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999887 4788999876 355666777654 222234799999765
Q ss_pred ccc-CC----CHHHHHHHHHHhcCcCcEEEEE
Q 022592 198 SLM-GI----NFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 198 ~l~-~~----~~~~~l~el~r~LkpgG~l~i~ 224 (294)
.=. .. --..+++.+.++|+++|+++.-
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 433 11 2368999999999999999885
No 218
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.00065 Score=58.79 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=73.2
Q ss_pred CCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
+.+++|||+|.|.=+.-++ ..|+-+|... +|++++.+.++++.-....||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 4699999999998555443 3688888766 5788888888877632111999998766
Q ss_pred CCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 202 INFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 202 ~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.+....+.-+..++++||.+++.-+....+ -..+........|+.+..
T Consensus 145 a~L~~l~e~~~pllk~~g~~~~~k~~~~~~------e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 145 ASLNVLLELCLPLLKVGGGFLAYKGLAGKD------ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred cchHHHHHHHHHhcccCCcchhhhHHhhhh------hHHHHHHHHHhhcCcEEE
Confidence 244566677788999999887643221111 225667778888888777
No 219
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.49 E-value=0.00085 Score=58.03 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCCCC---CCCCCccEEEEcc
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCL 197 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~lp---~~~~~fD~Vi~~~ 197 (294)
.++.+||-+|+++|.....++ +.|++|+.|+ .|+--+.+|+.... .--+.+|+|++.-
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV 151 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDV 151 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecC
Confidence 377899999999999887776 3899999998 57777888886522 1134799988653
Q ss_pred cccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCC-CCCHHHHHHHHHHCCCeEEE
Q 022592 198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTG-GADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~-~~~~~~~~~~l~~~Gf~~~~ 255 (294)
+ +.....-++..+...||+||.++++--.+..+.... .-.-.+-.+.|++.||++.+
T Consensus 152 a-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 152 A-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred C-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 3 223345667778889999999999743222211100 00112334667888999977
No 220
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.49 E-value=0.00018 Score=65.91 Aligned_cols=144 Identities=17% Similarity=0.233 Sum_probs=82.2
Q ss_pred CCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------------cceEEEeccC-----------------CCCcE
Q 022592 125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------------NKVFSFDLVS-----------------NDPSV 175 (294)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------------~~v~gvD~s~-----------------~~~~~ 175 (294)
|...++.++..+... ++.+|+|.+||+|.++..+. ..++|+|+.+ ....+
T Consensus 31 P~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 31 PREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp -HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 334455566666443 56689999999999876553 3689999987 12346
Q ss_pred EEccCCCCCCC--CCCccEEEEcccccCC---------C-------------HHHHHHHHHHhcCcCcEEEEEeecCCCC
Q 022592 176 IACDMSNTPLN--SSSVDVAVFCLSLMGI---------N-------------FPNYLQEAQRVLKPSGWLLIAEVKSRFD 231 (294)
Q Consensus 176 ~~~d~~~lp~~--~~~fD~Vi~~~~l~~~---------~-------------~~~~l~el~r~LkpgG~l~i~e~~~~~~ 231 (294)
..+|....+.. ...||+|+++..+... + ...++..+.+.|++||.+.++-..+...
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~ 189 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLF 189 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhh
Confidence 77777654433 4689999987655311 0 1258899999999999988775443321
Q ss_pred CCCCCCCHHHHHHHHHHCCC-eE-EEE-----eccCCeEEEEEEEECC
Q 022592 232 PNTGGADPNKFSKAVCDLGF-AP-VSK-----DFSNKMFIMFYFKKKE 272 (294)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~Gf-~~-~~~-----~~~~~~f~~i~~~k~~ 272 (294)
.. -....+.+.|-+.++ +. +.. ........++++.|..
T Consensus 190 ~~---~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~ 234 (311)
T PF02384_consen 190 SS---SSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKK 234 (311)
T ss_dssp GS---THHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESS
T ss_pred cc---chHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeecc
Confidence 10 012466655544443 22 221 1133445788888865
No 221
>PRK00536 speE spermidine synthase; Provisional
Probab=97.42 E-value=0.00079 Score=60.15 Aligned_cols=103 Identities=13% Similarity=0.033 Sum_probs=67.8
Q ss_pred CCCEEEEEcCcccHHHHHhcc---ceEEEeccC-------------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592 141 PSLVIADFGCGDARLAKSVKN---KVFSFDLVS-------------------NDPSVIACDMSNTPLNSSSVDVAVFCLS 198 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~-------------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~ 198 (294)
...+||=||.|.|..++.+.. +|+.||+.+ ++++++.. +. ....++||+||.-..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICLQE 148 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEcCC
Confidence 446999999999999998873 789999876 23344331 11 112368999998643
Q ss_pred ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
....+.+.+.++|+|||.++.-.-...+.+ -....+.+.+++ .|..+.
T Consensus 149 ----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~----~~~~~i~~~l~~-~F~~v~ 196 (262)
T PRK00536 149 ----PDIHKIDGLKRMLKEDGVFISVAKHPLLEH----VSMQNALKNMGD-FFSIAM 196 (262)
T ss_pred ----CChHHHHHHHHhcCCCcEEEECCCCcccCH----HHHHHHHHHHHh-hCCceE
Confidence 347888999999999999988421111110 012344455555 688666
No 222
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00042 Score=66.05 Aligned_cols=83 Identities=24% Similarity=0.436 Sum_probs=70.3
Q ss_pred EEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccCC--C
Q 022592 144 VIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI--N 203 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~--~ 203 (294)
++|-+|||.-.+...+. ..++.+|+|+ ....+...|+..+.|++++||+|+.-..+.+. +
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~d 130 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFED 130 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCC
Confidence 89999999999888776 4789999998 23467889999999999999999999999873 1
Q ss_pred ---------HHHHHHHHHHhcCcCcEEEEEee
Q 022592 204 ---------FPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 204 ---------~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
....+.++.|+|+|||+++.+.+
T Consensus 131 e~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 131 EDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred chhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 23567899999999999888765
No 223
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.38 E-value=0.0027 Score=58.73 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=82.4
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~ 200 (294)
+|.+|||+=||-|.++..++ ..|+++|+++ ..+..+.+|+..++..-+.+|-|++.+.-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~- 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK- 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-
Confidence 57899999999999999887 2599999998 23668899998877655789999987552
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 254 (294)
+-..++..+.+.+++||.+.+.++........ .....+.....+.|+++.
T Consensus 267 --~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--~~~~~i~~~~~~~~~~~~ 316 (341)
T COG2520 267 --SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--RPEKRIKSAARKGGYKVE 316 (341)
T ss_pred --cchhhHHHHHHHhhcCcEEEEEeccchhhccc--chHHHHHHHHhhccCcce
Confidence 44678888899999999999988665443211 244667777777776433
No 224
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00054 Score=60.91 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=58.0
Q ss_pred cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCCC-C
Q 022592 127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSS-S 189 (294)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~~-~ 189 (294)
+.++.+++..... ++..|||||+|.|.++..|+ ..|+++++.+ .++.++.+|+....++.- .
T Consensus 17 ~v~~kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 17 NVIDKIVEAANIS-PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHHHhcCCC-CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 3456667766655 46799999999999999997 4899999876 468899999999888653 5
Q ss_pred ccEEEEcccccC
Q 022592 190 VDVAVFCLSLMG 201 (294)
Q Consensus 190 fD~Vi~~~~l~~ 201 (294)
++.|+++.-..-
T Consensus 96 ~~~vVaNlPY~I 107 (259)
T COG0030 96 PYKVVANLPYNI 107 (259)
T ss_pred CCEEEEcCCCcc
Confidence 788888765543
No 225
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.31 E-value=0.0014 Score=58.18 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=72.6
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCC-CCCCCC-CccEEE
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSS-SVDVAV 194 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~-lp~~~~-~fD~Vi 194 (294)
...+||=||.|.|..+..+. ..++.||+.+ +++.++.+|... +.-..+ .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 45699999999999999886 3789999887 366788888754 222233 899999
Q ss_pred EcccccC-CC----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592 195 FCLSLMG-IN----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254 (294)
Q Consensus 195 ~~~~l~~-~~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 254 (294)
....-.. .. -..+++.+.++|+|||++++-.-..... ......+...+++....+.
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~----~~~~~~i~~tl~~~F~~v~ 216 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH----PELFKSILKTLRSVFPQVK 216 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT----HHHHHHHHHHHHTTSSEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc----hHHHHHHHHHHHHhCCceE
Confidence 8554422 11 2589999999999999998854221111 1122445566777766443
No 226
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.30 E-value=0.00054 Score=61.97 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=69.3
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC-----------------CCCcEEEccCCCC-C--CCCCCccEEEEc
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNT-P--LNSSSVDVAVFC 196 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------------~~~~~~~~d~~~l-p--~~~~~fD~Vi~~ 196 (294)
.+.+|||+=|=||.++...+ .+|++||.|. ..+.++..|+... . -..+.||+||+.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 56799999999999988765 3799999997 3557888888652 1 124689999985
Q ss_pred ccccC---C----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC
Q 022592 197 LSLMG---I----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG 250 (294)
Q Consensus 197 ~~l~~---~----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G 250 (294)
..-.- . +....+..+.++|+|||.|+++.-... ++.+.+.+++.+++
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~-------i~~~~l~~~~~~~a 256 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH-------ISPDFLLEAVAEAA 256 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT-------S-HHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc-------cCHHHHHHHHHHhC
Confidence 44321 1 456788899999999999987653322 35577777776655
No 227
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.25 E-value=0.0032 Score=58.37 Aligned_cols=86 Identities=24% Similarity=0.357 Sum_probs=52.2
Q ss_pred CCCEEEEEcCcccHHHHHhc--------------c-------ceEEEeccCC-------------------CCcE---EE
Q 022592 141 PSLVIADFGCGDARLAKSVK--------------N-------KVFSFDLVSN-------------------DPSV---IA 177 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~--------------~-------~v~gvD~s~~-------------------~~~~---~~ 177 (294)
...+|+|+||.+|..+..+. . .|+.-|+-.+ ..-| +.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 34589999999999776553 1 4566777652 1112 23
Q ss_pred ccCCCCCCCCCCccEEEEcccccCC--------C--------------------------------HHHHHHHHHHhcCc
Q 022592 178 CDMSNTPLNSSSVDVAVFCLSLMGI--------N--------------------------------FPNYLQEAQRVLKP 217 (294)
Q Consensus 178 ~d~~~lp~~~~~fD~Vi~~~~l~~~--------~--------------------------------~~~~l~el~r~Lkp 217 (294)
+.+..--+|+++.|+++++.+|||. + +..+|+.=++-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 4555555789999999999999982 1 11355556678999
Q ss_pred CcEEEEEee
Q 022592 218 SGWLLIAEV 226 (294)
Q Consensus 218 gG~l~i~e~ 226 (294)
||.++++-+
T Consensus 176 GG~mvl~~~ 184 (334)
T PF03492_consen 176 GGRMVLTFL 184 (334)
T ss_dssp EEEEEEEEE
T ss_pred CcEEEEEEe
Confidence 999999743
No 228
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.24 E-value=0.0036 Score=58.85 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=32.6
Q ss_pred CCCCCccEEEEcccccCCC---------------------------------------HHHHHHHHHHhcCcCcEEEEEe
Q 022592 185 LNSSSVDVAVFCLSLMGIN---------------------------------------FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 185 ~~~~~fD~Vi~~~~l~~~~---------------------------------------~~~~l~el~r~LkpgG~l~i~e 225 (294)
||.++.++++++.+|||.+ +..+|+.=++-|.|||.++++-
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 7889999999999999931 1234555567899999999974
Q ss_pred e
Q 022592 226 V 226 (294)
Q Consensus 226 ~ 226 (294)
+
T Consensus 238 ~ 238 (386)
T PLN02668 238 L 238 (386)
T ss_pred e
Confidence 3
No 229
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0074 Score=56.48 Aligned_cols=122 Identities=14% Similarity=0.161 Sum_probs=77.6
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---c----ceEEEeccC---------------CCCcEEEccCCCCC---
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---N----KVFSFDLVS---------------NDPSVIACDMSNTP--- 184 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~----~v~gvD~s~---------------~~~~~~~~d~~~lp--- 184 (294)
..+...+....++.+|||+.+++|.=+.+++ . .|+++|.+. .++..+..|...++
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL 224 (355)
T ss_pred HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc
Confidence 3444444444578899999999997544443 2 369999998 34557777765443
Q ss_pred CCCCCccEEEEcccccC-------CC----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHH
Q 022592 185 LNSSSVDVAVFCLSLMG-------IN----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNK 241 (294)
Q Consensus 185 ~~~~~fD~Vi~~~~l~~-------~~----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~ 241 (294)
...+.||.|+.-..-.. .+ -..+|..+.++|||||.|+.+...-... -+.+.
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e-----ENE~v 299 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE-----ENEEV 299 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh-----cCHHH
Confidence 22235999995332211 11 1368899999999999999986432221 13355
Q ss_pred HHHHHHHC-CCeEEEE
Q 022592 242 FSKAVCDL-GFAPVSK 256 (294)
Q Consensus 242 ~~~~l~~~-Gf~~~~~ 256 (294)
+..+|++. +|+.+..
T Consensus 300 V~~~L~~~~~~~~~~~ 315 (355)
T COG0144 300 VERFLERHPDFELEPV 315 (355)
T ss_pred HHHHHHhCCCceeecc
Confidence 66777765 5655553
No 230
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.13 E-value=0.0041 Score=55.94 Aligned_cols=121 Identities=19% Similarity=0.268 Sum_probs=65.7
Q ss_pred CEEEEEcCcccHHHHHhc-------cceEEEeccC-----------------CCCcEEEccCCCCCCCCCCccEEEEccc
Q 022592 143 LVIADFGCGDARLAKSVK-------NKVFSFDLVS-----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS 198 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~-----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~ 198 (294)
.+|+=||||+=.++..+. ..|+++|+++ .++.++.+|+.+.+..-..||+|+....
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 499999999876654443 2578999987 3678899999877655567999887655
Q ss_pred ccC--CCHHHHHHHHHHhcCcCcEEEEEe---ecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe--ccCCeEEEEEEEEC
Q 022592 199 LMG--INFPNYLQEAQRVLKPSGWLLIAE---VKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD--FSNKMFIMFYFKKK 271 (294)
Q Consensus 199 l~~--~~~~~~l~el~r~LkpgG~l~i~e---~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~~~f~~i~~~k~ 271 (294)
..- .+..+++..+.+.++||..+++-. +...+++. .+.++ +. ||++..+. .....-+++++||.
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~---vd~~~----l~--gf~~~~~~hP~~~ViNSvv~~rk~ 272 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPV---VDPED----LR--GFEVLAVVHPTDEVINSVVFARKK 272 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-------TGG----GT--TEEEEEEE---TT---EEEEE---
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCC---CChHH----CC--CeEEEEEECCCCCceeEEEEEEec
Confidence 443 377899999999999999888853 22223221 11121 22 99987633 23345677777775
Q ss_pred C
Q 022592 272 E 272 (294)
Q Consensus 272 ~ 272 (294)
.
T Consensus 273 ~ 273 (276)
T PF03059_consen 273 Q 273 (276)
T ss_dssp -
T ss_pred c
Confidence 4
No 231
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0021 Score=54.29 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=67.3
Q ss_pred HHHHHHhhc-cCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCCcEEEccCCCC-C-CC
Q 022592 130 NIIVKWLKD-HSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT-P-LN 186 (294)
Q Consensus 130 ~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~~~~~~d~~~l-p-~~ 186 (294)
+.+..+|.. ...+.++||+=+|+|.++.... ..++.||.+. .+..++..|+... + ..
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~ 110 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG 110 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC
Confidence 446666665 2578899999999999988775 4899999887 3455666776532 1 12
Q ss_pred C-CCccEEEEcccccCC--CHHHHHHH--HHHhcCcCcEEEEE
Q 022592 187 S-SSVDVAVFCLSLMGI--NFPNYLQE--AQRVLKPSGWLLIA 224 (294)
Q Consensus 187 ~-~~fD~Vi~~~~l~~~--~~~~~l~e--l~r~LkpgG~l~i~ 224 (294)
. ++||+|+...-++.- +....+.. -..+|+|+|.+++-
T Consensus 111 ~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 111 TREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred CCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 2 259999998887752 33444444 55789999998884
No 232
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.07 E-value=0.0068 Score=57.07 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=60.5
Q ss_pred CEEEEEcCcccHHHHHhc------cceEEEeccCC---------------CCcEEEccCCCCC-CCCCCccEEEEccccc
Q 022592 143 LVIADFGCGDARLAKSVK------NKVFSFDLVSN---------------DPSVIACDMSNTP-LNSSSVDVAVFCLSLM 200 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~---------------~~~~~~~d~~~lp-~~~~~fD~Vi~~~~l~ 200 (294)
.+|||+.||+|..+..++ ..|+++|+++. ++.++..|+..+- .....||+|.... +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 589999999999888775 25899999982 3456677765532 1235699998755 2
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
-.+..++..+.+.+++||+|.++
T Consensus 124 -Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 -GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -CCcHHHHHHHHHhcccCCEEEEE
Confidence 34568999999999999999997
No 233
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.028 Score=47.98 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------CCCcEEEccCCCCC---CCCCCccEEEEccc
Q 022592 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCLS 198 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------~~~~~~~~d~~~lp---~~~~~fD~Vi~~~~ 198 (294)
.++.+||-+|+.+|....+++ +.+++|+.|+ .|+--+..|+.... .--+..|+|+.. +
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D-V 153 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD-V 153 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-c
Confidence 467899999999999887776 4799999998 46666677775421 113458887753 2
Q ss_pred ccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH----HHHHHHCCCeEEE
Q 022592 199 LMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF----SKAVCDLGFAPVS 255 (294)
Q Consensus 199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~----~~~l~~~Gf~~~~ 255 (294)
-.-....=+...+...|++||.++++--.+..+. .-+++++ ..-|++.||++.+
T Consensus 154 AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv---T~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 154 AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDV---TADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred CCchHHHHHHHHHHHhcccCCeEEEEEEeecccc---cCCHHHHHHHHHHHHHhcCceeeE
Confidence 1112234566788899999998888643333322 1223332 3457888999887
No 234
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0072 Score=53.71 Aligned_cols=115 Identities=19% Similarity=0.344 Sum_probs=80.5
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCCCCCC
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLN 186 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~lp~~ 186 (294)
...++..|.-. |+.+|++-|.|+|.++.+++ ++++.+|+.. +++.+..-|+....|.
T Consensus 94 ia~I~~~L~i~-PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLEIR-PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhcCC-CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 34566666655 89999999999999888876 4788899876 5778888898876554
Q ss_pred --CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 187 --SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 187 --~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
+..+|.|+... ..|..++..++.+||.+|.-++. +.+-.. -.+.-.++|..+||-.+.
T Consensus 173 ~ks~~aDaVFLDl----PaPw~AiPha~~~lk~~g~r~cs-FSPCIE------Qvqrtce~l~~~gf~~i~ 232 (314)
T KOG2915|consen 173 IKSLKADAVFLDL----PAPWEAIPHAAKILKDEGGRLCS-FSPCIE------QVQRTCEALRSLGFIEIE 232 (314)
T ss_pred ccccccceEEEcC----CChhhhhhhhHHHhhhcCceEEe-ccHHHH------HHHHHHHHHHhCCCceEE
Confidence 45688887542 46778888888899998754432 222111 112334678888996555
No 235
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.91 E-value=0.0051 Score=53.37 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=59.5
Q ss_pred CCCEEEEEcCcccHHHHHhc------cceEEEeccC----------------CCCcEEEccCCC-CC-----CCCCCccE
Q 022592 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP-----LNSSSVDV 192 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----------------~~~~~~~~d~~~-lp-----~~~~~fD~ 192 (294)
...++||||.=+|+-+..++ ++|+++|+.. ..+.++.++..+ ++ ...++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 45699999987777655544 5999999987 345667765533 11 34678999
Q ss_pred EEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 193 AVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 193 Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
++.- ++ .+......++.+++|+||.|++-.
T Consensus 153 aFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence 8753 22 355688999999999999999853
No 236
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.016 Score=55.57 Aligned_cols=112 Identities=18% Similarity=0.280 Sum_probs=77.0
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCC---CC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SS 188 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~---~~ 188 (294)
..+++++... ++.+|||+=||.|.++..|+ .+|+|+|+++ .|+.|..++++.+... ..
T Consensus 283 ~~a~~~~~~~-~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 283 ETALEWLELA-GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHHHHHhhc-CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence 3455666554 55799999999999999998 4899999998 3678888988875533 24
Q ss_pred CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH---HHHHHHCCCeEEEE
Q 022592 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF---SKAVCDLGFAPVSK 256 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~---~~~l~~~Gf~~~~~ 256 (294)
.+|.|+....=-. -...+++.+.+ ++|-.+++|+- ++.++ ...|...|+.+..+
T Consensus 362 ~~d~VvvDPPR~G-~~~~~lk~l~~-~~p~~IvYVSC------------NP~TlaRDl~~L~~~gy~i~~v 418 (432)
T COG2265 362 KPDVVVVDPPRAG-ADREVLKQLAK-LKPKRIVYVSC------------NPATLARDLAILASTGYEIERV 418 (432)
T ss_pred CCCEEEECCCCCC-CCHHHHHHHHh-cCCCcEEEEeC------------CHHHHHHHHHHHHhCCeEEEEE
Confidence 6899886421000 11256665555 57777888863 33444 46788889877664
No 237
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.86 E-value=0.019 Score=51.28 Aligned_cols=125 Identities=15% Similarity=0.220 Sum_probs=68.8
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccH--HHHHh----c--cceEEEeccC-------------CC--CcEEEccCCCCC-
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDAR--LAKSV----K--NKVFSFDLVS-------------ND--PSVIACDMSNTP- 184 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~--~~~~l----~--~~v~gvD~s~-------------~~--~~~~~~d~~~lp- 184 (294)
+.+.+.++.....-...||||||--. ....+ . .+|+-+|..+ ++ ..++.+|+.+..
T Consensus 56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEA 135 (267)
T ss_dssp HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHH
T ss_pred HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHH
Confidence 34566776654122469999999432 22222 2 4899999876 34 678999987732
Q ss_pred -C----CCCCcc-----EEEEcccccCC----CHHHHHHHHHHhcCcCcEEEEEeecCCCCCC---------------CC
Q 022592 185 -L----NSSSVD-----VAVFCLSLMGI----NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPN---------------TG 235 (294)
Q Consensus 185 -~----~~~~fD-----~Vi~~~~l~~~----~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~---------------~~ 235 (294)
+ -.+-+| .|++..+|||. ++..+++.+...|.||.+|+|+-......+. ..
T Consensus 136 iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~ 215 (267)
T PF04672_consen 136 ILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGR 215 (267)
T ss_dssp HHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS---
T ss_pred HhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCce
Confidence 0 012233 66788889883 6889999999999999999998765543221 11
Q ss_pred CCCHHHHHHHHHHCCCeEEE
Q 022592 236 GADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 236 ~~~~~~~~~~l~~~Gf~~~~ 255 (294)
..+.+++..+|. ||++++
T Consensus 216 ~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 216 PRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp -B-HHHHHHCCT--TSEE-T
T ss_pred ecCHHHHHHHcC--CCccCC
Confidence 136666666666 666654
No 238
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.86 E-value=0.027 Score=48.64 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=84.8
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------CCCcEEEccCCCCCCCC
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNS 187 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~ 187 (294)
+..+..++. .+..++||||--|++..+|. ..+++.|+++ +.+....+|....--++
T Consensus 7 L~~va~~V~---~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~ 83 (226)
T COG2384 7 LTTVANLVK---QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELE 83 (226)
T ss_pred HHHHHHHHH---cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCcc
Confidence 344555655 34459999999999999886 3789999998 24455556653322334
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE---EeccCCeEE
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS---KDFSNKMFI 264 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~---~~~~~~~f~ 264 (294)
+.+|+|+...+ -..-....|.+-...|+-=-.+++- + ......+.++|...+|.+.. +......|.
T Consensus 84 d~~d~ivIAGM-GG~lI~~ILee~~~~l~~~~rlILQ---P-------n~~~~~LR~~L~~~~~~I~~E~ileE~~kiYE 152 (226)
T COG2384 84 DEIDVIVIAGM-GGTLIREILEEGKEKLKGVERLILQ---P-------NIHTYELREWLSANSYEIKAETILEEDGKIYE 152 (226)
T ss_pred CCcCEEEEeCC-cHHHHHHHHHHhhhhhcCcceEEEC---C-------CCCHHHHHHHHHhCCceeeeeeeecccCeEEE
Confidence 57999886543 2233445666666666533244442 1 12458899999999999987 444455677
Q ss_pred EEEEEECC
Q 022592 265 MFYFKKKE 272 (294)
Q Consensus 265 ~i~~~k~~ 272 (294)
++++.+..
T Consensus 153 Ilv~e~~~ 160 (226)
T COG2384 153 ILVVEKSS 160 (226)
T ss_pred EEEEecCC
Confidence 77777764
No 239
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.86 E-value=0.0015 Score=59.41 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCCCC--CCC
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP--LNS 187 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~lp--~~~ 187 (294)
+..+++.+... ++..+||.+||.|.++..++ ..|+|+|.++ .++.++.+|+.++. ++.
T Consensus 8 l~Evl~~L~~~-pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 8 LDEVVDALAIK-PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHHhhCCC-CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 35567777655 66799999999999988776 3799999987 25778888877643 112
Q ss_pred --CCccEEEEcccc
Q 022592 188 --SSVDVAVFCLSL 199 (294)
Q Consensus 188 --~~fD~Vi~~~~l 199 (294)
.++|.|++....
T Consensus 87 ~~~~vDgIl~DLGv 100 (296)
T PRK00050 87 GLGKVDGILLDLGV 100 (296)
T ss_pred CCCccCEEEECCCc
Confidence 278999876555
No 240
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.86 E-value=0.0023 Score=53.88 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=61.3
Q ss_pred CCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC--
Q 022592 142 SLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-- 201 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-- 201 (294)
...+.|+|+|+|.++...+ .+|++++..+ .+++++.+|+....| ...|+|+|-. |.-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm-lDTaL 109 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM-LDTAL 109 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-hhHHh
Confidence 3589999999999887665 5899999887 367789999998887 3469887642 221
Q ss_pred --CCHHHHHHHHHHhcCcCcEEEEE
Q 022592 202 --INFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 202 --~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
.....+++.+...|+-.|.++-.
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccccH
Confidence 24457888888899999888764
No 241
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0047 Score=53.07 Aligned_cols=104 Identities=12% Similarity=0.187 Sum_probs=71.8
Q ss_pred hhccCCCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhcc----ceEEEeccC--------------CCCcEEEccCC
Q 022592 120 QMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKN----KVFSFDLVS--------------NDPSVIACDMS 181 (294)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~----~v~gvD~s~--------------~~~~~~~~d~~ 181 (294)
.+..|....++.+.+.+. ..+.+||.||-|-|.....+.+ +-+.++..+ +++..+.+--+
T Consensus 82 VMm~WEtpiMha~A~ai~--tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We 159 (271)
T KOG1709|consen 82 VMMRWETPIMHALAEAIS--TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE 159 (271)
T ss_pred hhhhhhhHHHHHHHHHHh--hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchH
Confidence 355666666666565555 3577999999999998877762 445566555 34444444222
Q ss_pred CC--CCCCCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 182 NT--PLNSSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 182 ~l--p~~~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
+. .++++.||-|+....-++ .+...+.+.+.|+|||+|++-...
T Consensus 160 Dvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 160 DVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 21 256888999987665555 478889999999999999988753
No 242
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.83 E-value=0.0084 Score=59.03 Aligned_cols=103 Identities=14% Similarity=0.219 Sum_probs=62.3
Q ss_pred CCEEEEEcCcccHHHHHhc-------------cceEEEeccCC---------------CCcEEEccCCCC-----CCCCC
Q 022592 142 SLVIADFGCGDARLAKSVK-------------NKVFSFDLVSN---------------DPSVIACDMSNT-----PLNSS 188 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-------------~~v~gvD~s~~---------------~~~~~~~d~~~l-----p~~~~ 188 (294)
..+|||.|||+|.++..++ ..++|+|+++. .+.+...|.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 3589999999999887664 14688998761 122333332211 11125
Q ss_pred CccEEEEcccccCC--C---------------------------------------------HHHHH-HHHHHhcCcCcE
Q 022592 189 SVDVAVFCLSLMGI--N---------------------------------------------FPNYL-QEAQRVLKPSGW 220 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~--~---------------------------------------------~~~~l-~el~r~LkpgG~ 220 (294)
.||+||.+.-..-. + ...++ ..+.++|+|||.
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 79999987665421 0 00133 557889999999
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592 221 LLIAEVKSRFDPNTGGADPNKFSKAVCD 248 (294)
Q Consensus 221 l~i~e~~~~~~~~~~~~~~~~~~~~l~~ 248 (294)
+.++...+.... .....+.+.+-+
T Consensus 192 ~~~I~P~s~l~~----~~~~~lR~~ll~ 215 (524)
T TIGR02987 192 VSIISPASWLGD----KTGENLREYIFN 215 (524)
T ss_pred EEEEEChHHhcC----ccHHHHHHHHHh
Confidence 998865554432 233566655443
No 243
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.73 E-value=0.0058 Score=62.27 Aligned_cols=84 Identities=11% Similarity=0.045 Sum_probs=58.1
Q ss_pred CCCEEEEEcCcccHHHHHhc-----------------------------------------------cceEEEeccC---
Q 022592 141 PSLVIADFGCGDARLAKSVK-----------------------------------------------NKVFSFDLVS--- 170 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----------------------------------------------~~v~gvD~s~--- 170 (294)
++..++|.+||+|.++...+ ..++|+|+++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46789999999999876542 0379999997
Q ss_pred -------------CCCcEEEccCCCCCCC--CCCccEEEEcccccC-C----CHHHHHHHHHHhc---CcCcEEEEE
Q 022592 171 -------------NDPSVIACDMSNTPLN--SSSVDVAVFCLSLMG-I----NFPNYLQEAQRVL---KPSGWLLIA 224 (294)
Q Consensus 171 -------------~~~~~~~~d~~~lp~~--~~~fD~Vi~~~~l~~-~----~~~~~l~el~r~L---kpgG~l~i~ 224 (294)
..+.+..+|+.+++.+ .++||+|+++.-... . +...+..++.+.| .+|+.+++.
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 2467889999887654 357999999877643 1 2233333333333 488888775
No 244
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.66 E-value=0.0066 Score=53.96 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=46.1
Q ss_pred CCCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL 199 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l 199 (294)
+.+.|||||.|||.++..+. ..|+++++.+ ...+++.+|+...++| .||++|++.-.
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNLPY 133 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccCCc
Confidence 66799999999999998886 5899999887 3567899999876654 48999985444
No 245
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0018 Score=53.14 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=69.8
Q ss_pred CCEEEEEcCcccHHHH-Hhc-----cceEEEeccCCCC-------------cEEEccCCC-------CCCCCCCccEEEE
Q 022592 142 SLVIADFGCGDARLAK-SVK-----NKVFSFDLVSNDP-------------SVIACDMSN-------TPLNSSSVDVAVF 195 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~-~l~-----~~v~gvD~s~~~~-------------~~~~~d~~~-------lp~~~~~fD~Vi~ 195 (294)
+..||++|.|--.++. .++ ..|+..|-+...+ .+..|.+.. .......||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 4579999999544443 333 2566677655111 111111110 1123458999999
Q ss_pred cccccCC-CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 196 CLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 196 ~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
..-+.+. .....++.|.++|+|.|..++.... .+-+.+.|.+.....||.+..
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR-------Rg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR-------RGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcccceeEecCc-------ccchHHHHHHHHHhceeEEEe
Confidence 8887764 4567888999999999997775322 234788999999999998876
No 246
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.56 E-value=0.018 Score=50.77 Aligned_cols=133 Identities=16% Similarity=0.221 Sum_probs=76.7
Q ss_pred HHHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------CCCcEEEccCCCCCCCCC
Q 022592 129 VNIIVKWLKDH-SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSS 188 (294)
Q Consensus 129 ~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~ 188 (294)
++.+.+.+... ++..+|+|||||--.++.... ..++|+|+.. ....+...|+..-+ +..
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~ 170 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKE 170 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTS
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCC
Confidence 44455555443 345799999999998887654 2789999997 35567777887654 356
Q ss_pred CccEEEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCC---CCHHHHHHHHHHCCCeEEEEeccCCe
Q 022592 189 SVDVAVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGG---ADPNKFSKAVCDLGFAPVSKDFSNKM 262 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~---~~~~~~~~~l~~~Gf~~~~~~~~~~~ 262 (294)
..|+.+..=+++-.+. ...++-+.++=.| .++|+...........+ .....|..++...|+.+....+.+..
T Consensus 171 ~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~~~~El 248 (251)
T PF07091_consen 171 PADLALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLTFGNEL 248 (251)
T ss_dssp EESEEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEEETTEE
T ss_pred CcchhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEeccccccccCccccccCHHHHHHHhcccCCceeeeeecccce
Confidence 6899998777665322 2223323332222 45555433333322222 23457788888899998888888875
Q ss_pred EE
Q 022592 263 FI 264 (294)
Q Consensus 263 f~ 264 (294)
++
T Consensus 249 vy 250 (251)
T PF07091_consen 249 VY 250 (251)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 247
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.56 E-value=0.0058 Score=54.67 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=60.1
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC-------------CCCcEEEccCCCCCCCC---CC
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNS---SS 189 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~-------------~~~~~~~~d~~~lp~~~---~~ 189 (294)
.+.+++.+... ++..|||||+|+|.++..|. ..++++|+.+ .++.++.+|+..+..+. ..
T Consensus 19 ~~~Iv~~~~~~-~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~ 97 (262)
T PF00398_consen 19 ADKIVDALDLS-EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQ 97 (262)
T ss_dssp HHHHHHHHTCG-TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSS
T ss_pred HHHHHHhcCCC-CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCC
Confidence 45567766654 67799999999999999887 5899999886 47889999999877654 34
Q ss_pred ccEEEEcccccCCCHHHHHHHHHHhcCc
Q 022592 190 VDVAVFCLSLMGINFPNYLQEAQRVLKP 217 (294)
Q Consensus 190 fD~Vi~~~~l~~~~~~~~l~el~r~Lkp 217 (294)
...|+++... .--..++..+...-+.
T Consensus 98 ~~~vv~NlPy--~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 98 PLLVVGNLPY--NISSPILRKLLELYRF 123 (262)
T ss_dssp EEEEEEEETG--TGHHHHHHHHHHHGGG
T ss_pred ceEEEEEecc--cchHHHHHHHhhcccc
Confidence 5666766443 2223455555554344
No 248
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.49 E-value=0.023 Score=52.56 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=84.0
Q ss_pred CCEEEEEcCcccHHHHHhc-----cceEEEeccC----------------------CCCcEEEccCCCC-CCCCCCccEE
Q 022592 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSNT-PLNSSSVDVA 193 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~----------------------~~~~~~~~d~~~l-p~~~~~fD~V 193 (294)
..+||-+|.|.|..++.+. .+++-+|+.+ ++++++..|+.+. .-..+.||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 3589999999999999886 4889999887 3455666666552 2234579999
Q ss_pred EEcccccCC------CHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE---EeccCCeEE
Q 022592 194 VFCLSLMGI------NFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS---KDFSNKMFI 264 (294)
Q Consensus 194 i~~~~l~~~------~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~---~~~~~~~f~ 264 (294)
|....=-.. --.++..-+.+.|+++|.+++---...+.+. .. =.+.+-++++||.+.- .-.....|.
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~-vf---w~i~aTik~AG~~~~Pyhv~VPTFGeWG 445 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR-VF---WRIDATIKSAGYRVWPYHVHVPTFGEWG 445 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc-ee---eeehhHHHhCcceeeeeEEecCcccccc
Confidence 875432221 1247888899999999999985322222221 11 2345678999998765 223456677
Q ss_pred EEEEEECC
Q 022592 265 MFYFKKKE 272 (294)
Q Consensus 265 ~i~~~k~~ 272 (294)
++.+.+..
T Consensus 446 f~l~~~~~ 453 (508)
T COG4262 446 FILAAPGD 453 (508)
T ss_pred eeeccccc
Confidence 77776643
No 249
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.48 E-value=0.011 Score=55.33 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=34.8
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN 182 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~ 182 (294)
+.+++++... ++ .|||+-||.|.++..++ ..|+|+|+++ .+++|+.+++++
T Consensus 187 ~~~~~~l~~~-~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 187 EQALEWLDLS-KG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHCTT--TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHhhcC-CC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 3455666543 33 89999999999999998 4899999987 467788776543
No 250
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.44 E-value=0.00072 Score=51.59 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=38.3
Q ss_pred EEEcCcccHHHHHhcc--------ceEEEeccC---------------CCCcEEEccCCCC--CCCCCCccEEEEccccc
Q 022592 146 ADFGCGDARLAKSVKN--------KVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 146 LDiGcG~G~~~~~l~~--------~v~gvD~s~---------------~~~~~~~~d~~~l--p~~~~~fD~Vi~~~~l~ 200 (294)
||||+..|..+..++. +++++|..+ .+++++.++.... .++.++||+|+.-..-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 6899999987776651 689999887 2455666666432 12257899988765321
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
+......+..+.+.|+|||.+++-+
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2345677888999999999988744
No 251
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.43 E-value=0.0076 Score=51.08 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=53.9
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC--------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG- 201 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~--------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~- 201 (294)
.+.+|||+|+|+|..+...+ ..|++.|+.+ .++.++..|+-. .+..||+|+...+++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecCc
Confidence 46799999999999777664 3677777765 133455555543 4567999999888875
Q ss_pred CCHHHHHHHHHHhcCcCcEEEE
Q 022592 202 INFPNYLQEAQRVLKPSGWLLI 223 (294)
Q Consensus 202 ~~~~~~l~el~r~LkpgG~l~i 223 (294)
..-.+++. +.+.|+..|..++
T Consensus 156 ~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 156 TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred hHHHHHHH-HHHHHHhCCCEEE
Confidence 44456666 6666666665555
No 252
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.015 Score=50.43 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=62.2
Q ss_pred CEEEEEcCcccHHHHHhcc--------------ceEEEeccC----CCCcEEEccCCCCC--------CCCCCccEEEEc
Q 022592 143 LVIADFGCGDARLAKSVKN--------------KVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVAVFC 196 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~~--------------~v~gvD~s~----~~~~~~~~d~~~lp--------~~~~~fD~Vi~~ 196 (294)
.+++|+.+.+|.|+..|.. .+++||+-+ +.+.-+++|+.... |..+..|+|+|.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcD 122 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCD 122 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeC
Confidence 4799999999999988851 389999987 56677888987743 556789999997
Q ss_pred ccccC-----CC-------HHHHHHHHHHhcCcCcEEEEE
Q 022592 197 LSLMG-----IN-------FPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 197 ~~l~~-----~~-------~~~~l~el~r~LkpgG~l~i~ 224 (294)
.+-.- .| ...+|.-...+|+|||.|+--
T Consensus 123 GAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 123 GAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred CCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 66432 22 235666677899999999874
No 253
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.91 E-value=0.0031 Score=52.26 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=37.2
Q ss_pred EEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCCC--CCCCC-ccEEEEcccc
Q 022592 144 VIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSSS-VDVAVFCLSL 199 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~lp--~~~~~-fD~Vi~~~~l 199 (294)
.|+|+.||.|..+..++ ..|+++|+++ +++.++.+|+.++. +.... +|+|+++...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 69999999999999988 4899999997 47889999987642 22222 7999976543
No 254
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.68 E-value=0.033 Score=53.86 Aligned_cols=123 Identities=24% Similarity=0.345 Sum_probs=82.0
Q ss_pred HHHHHhcChhhHHHHHHhHHhhhccCCCcHHHHHHHHhhccCC--CCEEEEEcCcccHHHHHhc-------c--ceEEEe
Q 022592 99 ALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSP--SLVIADFGCGDARLAKSVK-------N--KVFSFD 167 (294)
Q Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~VLDiGcG~G~~~~~l~-------~--~v~gvD 167 (294)
..+.|..++-.|+.|.+... ..+++..+.... ..+|+=+|+|-|.+..... . ++++++
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~-----------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavE 402 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAIL-----------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVE 402 (649)
T ss_pred hhhhhhccchHHHHHHHHHH-----------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEe
Confidence 34567777777777765332 223333332212 3468899999998765443 1 678888
Q ss_pred ccC---------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-C--CHHHHHHHHHHhcCcCcEEEEEeecCC
Q 022592 168 LVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-I--NFPNYLQEAQRVLKPSGWLLIAEVKSR 229 (294)
Q Consensus 168 ~s~---------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~--~~~~~l~el~r~LkpgG~l~i~e~~~~ 229 (294)
-++ .++.++.+|+..++.+..+.|++|+-..-.+ . --+++|..+.+.|||.|+.+=....+.
T Consensus 403 KNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSy 482 (649)
T KOG0822|consen 403 KNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSY 482 (649)
T ss_pred cCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccchhhhh
Confidence 776 4678899999998865688999886433222 1 236899999999999998776655444
Q ss_pred CCC
Q 022592 230 FDP 232 (294)
Q Consensus 230 ~~~ 232 (294)
..|
T Consensus 483 i~P 485 (649)
T KOG0822|consen 483 IAP 485 (649)
T ss_pred hcc
Confidence 433
No 255
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.57 E-value=0.072 Score=45.55 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=47.4
Q ss_pred CEEEEEcCcccHHHHHhcc-----ceEEEeccC----------------------CCCcEEEccCCC-CC--CCCCCccE
Q 022592 143 LVIADFGCGDARLAKSVKN-----KVFSFDLVS----------------------NDPSVIACDMSN-TP--LNSSSVDV 192 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~----------------------~~~~~~~~d~~~-lp--~~~~~fD~ 192 (294)
..+.|||||.|.++..|+. .+.|++|-. .++.+...+... +| |..++.+-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 4799999999999999873 567777643 233333333321 22 12222222
Q ss_pred EEEcccccCC---------CHHHHHHHHHHhcCcCcEEEEE
Q 022592 193 AVFCLSLMGI---------NFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 193 Vi~~~~l~~~---------~~~~~l~el~r~LkpgG~l~i~ 224 (294)
.++.+---|+ --...+.+..-+|++||.++.+
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 1211111111 1236788888999999999886
No 256
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.53 E-value=0.014 Score=47.12 Aligned_cols=98 Identities=21% Similarity=0.294 Sum_probs=54.4
Q ss_pred ceEEEeccC----------------CCCcEEEccCCCCC--CCCCCccEEEEcccccC-C------CH---HHHHHHHHH
Q 022592 162 KVFSFDLVS----------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSLMG-I------NF---PNYLQEAQR 213 (294)
Q Consensus 162 ~v~gvD~s~----------------~~~~~~~~d~~~lp--~~~~~fD~Vi~~~~l~~-~------~~---~~~l~el~r 213 (294)
+|+|+|+-+ .++.++..+-+++. ++.+.+|+|+++...-- . .+ ..+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 478888876 35677776665544 23357999999877652 1 22 378889999
Q ss_pred hcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEecc
Q 022592 214 VLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFS 259 (294)
Q Consensus 214 ~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 259 (294)
+|+|||.+.++-...--......-...++.+.|.+..|.+....+.
T Consensus 81 lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEES
T ss_pred hhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEcc
Confidence 9999999999753211100000012234444455566777775543
No 257
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.48 E-value=0.14 Score=43.97 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=60.8
Q ss_pred CCCEEEEEcCcccHHHHHhc---------cceEEEeccC--------------CCCcEEEccCCCCC----C--CCCCcc
Q 022592 141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVS--------------NDPSVIACDMSNTP----L--NSSSVD 191 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~--------------~~~~~~~~d~~~lp----~--~~~~fD 191 (294)
....|+|+|.-.|.-+..++ .+|+|+|+.- ++++++.+|..+.. . -....+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 34599999999887665443 4899999932 47889999876532 1 111234
Q ss_pred EEEEcccccC--CCHHHHHHHHHHhcCcCcEEEEEeecC-----C-CC--CCCC-CCCHHHHHHHHHHCC-CeEE
Q 022592 192 VAVFCLSLMG--INFPNYLQEAQRVLKPSGWLLIAEVKS-----R-FD--PNTG-GADPNKFSKAVCDLG-FAPV 254 (294)
Q Consensus 192 ~Vi~~~~l~~--~~~~~~l~el~r~LkpgG~l~i~e~~~-----~-~~--~~~~-~~~~~~~~~~l~~~G-f~~~ 254 (294)
-++.+.--+| .+..+.|+....++.+|+++++-|... . +. +... .-....+.+.|.+.. |.+.
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEID 186 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEEEE
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEec
Confidence 3333333444 578889999999999999999965221 1 00 0011 123466777777765 5443
No 258
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.36 E-value=0.028 Score=45.31 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCcccHHHHHhcc---------ceEEEeccC
Q 022592 140 SPSLVIADFGCGDARLAKSVKN---------KVFSFDLVS 170 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~~---------~v~gvD~s~ 170 (294)
.+...|+|+|||.|+++..|+. .|+|+|.++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 3567999999999999887764 789999887
No 259
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.31 E-value=0.029 Score=50.81 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC---------------CCCcEEEccCCCC-C-CCCCCccEEEEc
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNT-P-LNSSSVDVAVFC 196 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~---------------~~~~~~~~d~~~l-p-~~~~~fD~Vi~~ 196 (294)
.++..|||+++|+|.=+..++ ..++++|++. .++..+..|.... + .....||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 377899999999998665554 4899999998 2445555666544 1 223459999953
Q ss_pred cc------ccC-CC----------------HHHHHHHHHHhc----CcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592 197 LS------LMG-IN----------------FPNYLQEAQRVL----KPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL 249 (294)
Q Consensus 197 ~~------l~~-~~----------------~~~~l~el~r~L----kpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~ 249 (294)
.. +.. .+ -...|..+.+.+ +|||.++.+.-.-.-. -+.+.+..++++.
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e-----ENE~vV~~fl~~~ 238 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE-----ENEEVVEKFLKRH 238 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG-----GTHHHHHHHHHHS
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH-----HHHHHHHHHHHhC
Confidence 22 221 11 136789999999 9999999985321111 1335566777776
Q ss_pred -CCeEEE
Q 022592 250 -GFAPVS 255 (294)
Q Consensus 250 -Gf~~~~ 255 (294)
.|+++.
T Consensus 239 ~~~~l~~ 245 (283)
T PF01189_consen 239 PDFELVP 245 (283)
T ss_dssp TSEEEEC
T ss_pred CCcEEEe
Confidence 565554
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.09 E-value=0.039 Score=53.16 Aligned_cols=47 Identities=11% Similarity=0.326 Sum_probs=36.7
Q ss_pred hhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccC---------------CCCcEEEccCCC
Q 022592 136 LKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN 182 (294)
Q Consensus 136 l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~ 182 (294)
....+.+..+||+-||||.++..++ ..|+|+++++ .|..|+++-+++
T Consensus 378 ~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 378 WAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 3334466789999999999999998 4899999998 366788875544
No 261
>PRK13699 putative methylase; Provisional
Probab=95.07 E-value=0.061 Score=47.14 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=49.6
Q ss_pred cEEEccCCCC--CCCCCCccEEEEccccc----C--------C---C-HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCC
Q 022592 174 SVIACDMSNT--PLNSSSVDVAVFCLSLM----G--------I---N-FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTG 235 (294)
Q Consensus 174 ~~~~~d~~~l--p~~~~~fD~Vi~~~~l~----~--------~---~-~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~ 235 (294)
.++.+|+.++ .++++++|+|+...-.. . . + ...++.+++|+|||||.+++.--.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~-------- 74 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW-------- 74 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc--------
Confidence 4566777654 57789999999874332 0 0 1 247889999999999988863110
Q ss_pred CCCHHHHHHHHHHCCCeEEE
Q 022592 236 GADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 236 ~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.....+..+++++||.+..
T Consensus 75 -~~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 75 -NRVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred -ccHHHHHHHHHHCCCEEee
Confidence 0135677888999998664
No 262
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.84 E-value=0.41 Score=43.12 Aligned_cols=110 Identities=11% Similarity=0.107 Sum_probs=68.7
Q ss_pred EEEEEcCcccHHHHHhc----cceEEEeccCC-------C--CcEEEccCCCCCCC--CCCccEEEEcccccC-------
Q 022592 144 VIADFGCGDARLAKSVK----NKVFSFDLVSN-------D--PSVIACDMSNTPLN--SSSVDVAVFCLSLMG------- 201 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------~--~~~~~~d~~~lp~~--~~~fD~Vi~~~~l~~------- 201 (294)
+|+|+-||.|.+...+. ..++++|+.+. + ..++.+|+.++... ...+|+++....-..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~ 81 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKR 81 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhc
Confidence 68999999999866664 36789998872 1 12567788776532 356999997765442
Q ss_pred ---CCH-HHHHH---HHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 202 ---INF-PNYLQ---EAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 202 ---~~~-~~~l~---el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.+. ...+. ++.+.++| .+++.|-...+...........+...|++.||.+..
T Consensus 82 ~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~ 140 (275)
T cd00315 82 KGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW 140 (275)
T ss_pred CCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE
Confidence 122 22232 34444566 355656443332222223457788999999998866
No 263
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.83 E-value=0.028 Score=44.49 Aligned_cols=74 Identities=16% Similarity=0.082 Sum_probs=47.0
Q ss_pred cEEEccCCC-CCCCCCCccEEEEcccccCCCH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592 174 SVIACDMSN-TPLNSSSVDVAVFCLSLMGINF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD 248 (294)
Q Consensus 174 ~~~~~d~~~-lp~~~~~fD~Vi~~~~l~~~~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~ 248 (294)
.+..+|+.. ++--...||+|+...---..++ ..++..++++++|||.+.... ....+...|.+
T Consensus 34 ~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys------------~a~~Vr~~L~~ 101 (124)
T PF05430_consen 34 TLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS------------SAGAVRRALQQ 101 (124)
T ss_dssp EEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------BHHHHHHHHH
T ss_pred EEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee------------chHHHHHHHHH
Confidence 345555543 2211266888876542222344 589999999999999887743 33779999999
Q ss_pred CCCeEEEEecc
Q 022592 249 LGFAPVSKDFS 259 (294)
Q Consensus 249 ~Gf~~~~~~~~ 259 (294)
+||.+......
T Consensus 102 aGF~v~~~~g~ 112 (124)
T PF05430_consen 102 AGFEVEKVPGF 112 (124)
T ss_dssp CTEEEEEEE-S
T ss_pred cCCEEEEcCCC
Confidence 99999875543
No 264
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.74 E-value=0.078 Score=40.64 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCEEEEEcCcccHHHHHhcc---ceEEEeccC
Q 022592 142 SLVIADFGCGDARLAKSVKN---KVFSFDLVS 170 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~ 170 (294)
....+|||||+|.+...|.. ..+|+|+-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 44799999999999888763 567888755
No 265
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.48 E-value=0.2 Score=47.02 Aligned_cols=90 Identities=11% Similarity=0.148 Sum_probs=63.8
Q ss_pred HhhccCCCCEEEEEcCcccHHHHHhc--c------------------------------------------ceEEEeccC
Q 022592 135 WLKDHSPSLVIADFGCGDARLAKSVK--N------------------------------------------KVFSFDLVS 170 (294)
Q Consensus 135 ~l~~~~~~~~VLDiGcG~G~~~~~l~--~------------------------------------------~v~gvD~s~ 170 (294)
.+....++..++|-=||+|.++...+ . .++|+|+.+
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 33444456689999999999987654 1 267999997
Q ss_pred ----------------CCCcEEEccCCCCCCCCCCccEEEEcccccC-C-C-------HHHHHHHHHHhcCcCcEEEEE
Q 022592 171 ----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-I-N-------FPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 171 ----------------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~-~-------~~~~l~el~r~LkpgG~l~i~ 224 (294)
+-+.|.+.|+..++-+-+.+|+|||+...-- . + ...+.+.+.+.++-.+.++++
T Consensus 265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 265 RHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3578999999988755478999999876543 1 1 234555666777766777775
No 266
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.42 E-value=0.39 Score=42.58 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=53.5
Q ss_pred CCEEEEEcCcccHHHHHhc----cceEEEeccC----------------CCC--cEEEc-----cCCCCCCCCCC-ccEE
Q 022592 142 SLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDP--SVIAC-----DMSNTPLNSSS-VDVA 193 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~----------------~~~--~~~~~-----d~~~lp~~~~~-fD~V 193 (294)
...||++|+|+|..+...+ ..|+-.|+.. .+. .+.+. +.....+.... +|+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 4579999999997555443 4676667655 010 12211 11111111223 9999
Q ss_pred EEcccccCC-CHHHHHHHHHHhcCcCcEEEEE
Q 022592 194 VFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 194 i~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~ 224 (294)
+++.++.+. .+..++..++..|..+|.+++.
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 999999985 7788888899999888855554
No 267
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.14 E-value=0.036 Score=47.93 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=49.3
Q ss_pred CCEEEEEcCcccHHHHHhc---cceEEEeccC----------------CCCcEEEccCCCC----CCCCCCccEEEEccc
Q 022592 142 SLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNT----PLNSSSVDVAVFCLS 198 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~----------------~~~~~~~~d~~~l----p~~~~~fD~Vi~~~~ 198 (294)
...|+|.-||-|..+..++ ..|+++|+++ +++.|+++|+.++ .+...-+|+|..+..
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~spp 174 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPP 174 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCC
Confidence 3478999888887766665 4889999987 4778999988653 343344666666554
Q ss_pred ccCCC-HHHHHHHHHHhcCcCc
Q 022592 199 LMGIN-FPNYLQEAQRVLKPSG 219 (294)
Q Consensus 199 l~~~~-~~~~l~el~r~LkpgG 219 (294)
-...+ ...-+..+...+.|.|
T Consensus 175 wggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 175 WGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCcchhhhhhhhhhhhcchhH
Confidence 44332 2233444555555543
No 268
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.03 E-value=0.47 Score=44.92 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=69.7
Q ss_pred CCCEEEEEcCcccHHHHHhc------cceEEEeccCC---------------CCcEEEccCCCCC---CCCCCccEEEEc
Q 022592 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSN---------------DPSVIACDMSNTP---LNSSSVDVAVFC 196 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~---------------~~~~~~~d~~~lp---~~~~~fD~Vi~~ 196 (294)
++.+|||+.+.+|.=+.+++ +.+++.|.+.. +..++..|...+| ++. +||-|+.-
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLD 319 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLD 319 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeec
Confidence 67899999999997444443 47899997762 3334555555444 333 89999843
Q ss_pred ccccC-----------CC------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC-CCe
Q 022592 197 LSLMG-----------IN------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL-GFA 252 (294)
Q Consensus 197 ~~l~~-----------~~------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~-Gf~ 252 (294)
.--.. .. ..+.|..+..++++||+|+.+...-... -+..-+..+|.+. .++
T Consensus 320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~-----ENE~vV~yaL~K~p~~k 394 (460)
T KOG1122|consen 320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE-----ENEAVVDYALKKRPEVK 394 (460)
T ss_pred CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh-----hhHHHHHHHHHhCCceE
Confidence 32221 00 2367888899999999999975432221 1334566777777 455
Q ss_pred EEE
Q 022592 253 PVS 255 (294)
Q Consensus 253 ~~~ 255 (294)
++.
T Consensus 395 L~p 397 (460)
T KOG1122|consen 395 LVP 397 (460)
T ss_pred ecc
Confidence 544
No 269
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.82 E-value=0.79 Score=40.37 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC-------------CCCcEEEccCCCCC---CCCCCccEEEEcc
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCL 197 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~-------------~~~~~~~~d~~~lp---~~~~~fD~Vi~~~ 197 (294)
.|+.+||-+|+++|.....+. ..|++|+.|. .|+--+..|+.... +.-.-+|+|++.-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv 234 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV 234 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccC
Confidence 488899999999999777665 3789999998 35556666765421 2223567766542
Q ss_pred cccCCCHH-HHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCC-HHHHHHHHHHCCCeEEE
Q 022592 198 SLMGINFP-NYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGAD-PNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 198 ~l~~~~~~-~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~-~~~~~~~l~~~Gf~~~~ 255 (294)
.+.+.. -+...+.-.|++||-++|+--.+..+.....-+ -..-.+.|++.-++..+
T Consensus 235 --aqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~E 292 (317)
T KOG1596|consen 235 --AQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKE 292 (317)
T ss_pred --CCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchh
Confidence 223332 344467788999999999754433332211100 01112445665665544
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.68 E-value=0.67 Score=43.00 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCcccH--HHHHhc----cceEEEeccCC---------CCcEEEcc-CCCCCCCCCCccEEEEcccccCCC
Q 022592 140 SPSLVIADFGCGDAR--LAKSVK----NKVFSFDLVSN---------DPSVIACD-MSNTPLNSSSVDVAVFCLSLMGIN 203 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~--~~~~l~----~~v~gvD~s~~---------~~~~~~~d-~~~lp~~~~~fD~Vi~~~~l~~~~ 203 (294)
.|+..|+=+|+| |. ++..++ .+|+++|.+++ ...++... ......-.+.+|+|+..-.
T Consensus 165 ~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 165 KPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred CCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 478899999988 65 343333 59999999984 22233322 1111111123899887644
Q ss_pred HHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
...+....+.|++||.++++.+..
T Consensus 239 -~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 239 -PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -hhhHHHHHHHHhcCCEEEEECCCC
Confidence 667888889999999999987663
No 271
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.67 E-value=0.049 Score=48.83 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCcccHHHHHhc----cceEEEeccCCCCcEEEccCCCC-------------------------C-CCCC-
Q 022592 140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSVIACDMSNT-------------------------P-LNSS- 188 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~~~~~~~~d~~~l-------------------------p-~~~~- 188 (294)
..+.+|||+|||+|.-...+. ..++..|.+..-+.+...+...+ - ...+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 356799999999998665553 25566666653221111111000 0 0112
Q ss_pred -CccEEEEcccccCCCHHHH--HHHHHHhcCcCcEEEEE
Q 022592 189 -SVDVAVFCLSLMGINFPNY--LQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 189 -~fD~Vi~~~~l~~~~~~~~--l~el~r~LkpgG~l~i~ 224 (294)
.||+|.++.++.-.+..+. ......++++.|.++++
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 6888888888776544333 44556677888888876
No 272
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.58 E-value=0.14 Score=42.29 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=45.6
Q ss_pred CCCccEEEEcccccCC---------CH---HHHHHHHHHhcCcCcEEEEEeecCCCC---CCCCCCCHHHHHHHHHHCCC
Q 022592 187 SSSVDVAVFCLSLMGI---------NF---PNYLQEAQRVLKPSGWLLIAEVKSRFD---PNTGGADPNKFSKAVCDLGF 251 (294)
Q Consensus 187 ~~~fD~Vi~~~~l~~~---------~~---~~~l~el~r~LkpgG~l~i~e~~~~~~---~~~~~~~~~~~~~~l~~~Gf 251 (294)
.++||++.+..+++|. |+ ...+.++.++|||||.|++.-....-. .....|....+..++. ||
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~--gf 138 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFY--GF 138 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhC--Cc
Confidence 4789999999999983 22 478888999999999999974332100 0111245556655555 88
Q ss_pred eEEE
Q 022592 252 APVS 255 (294)
Q Consensus 252 ~~~~ 255 (294)
+.+.
T Consensus 139 e~i~ 142 (177)
T PF03269_consen 139 EWID 142 (177)
T ss_pred EEEe
Confidence 8776
No 273
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=0.18 Score=41.05 Aligned_cols=106 Identities=15% Similarity=0.221 Sum_probs=64.5
Q ss_pred HHhHHhhhccCCC---cHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC----------------
Q 022592 114 HSGYQEQMSHWPE---LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------- 170 (294)
Q Consensus 114 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~---------------- 170 (294)
...|++...++.. ..++.++.++... +..+.+|+|.|.|+.....+ ...+|+++++
T Consensus 43 aPafRR~cvPYVpAtteQv~nVLSll~~n-~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~ 121 (199)
T KOG4058|consen 43 APAFRRLCVPYVPATTEQVENVLSLLRGN-PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA 121 (199)
T ss_pred hHHhheecccccCccHHHHHHHHHHccCC-CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc
Confidence 3445555555433 2345566666665 55699999999999877665 2568999887
Q ss_pred CCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 171 NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 171 ~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
....|..-|+....+.+-.+-+|+-..+++ ......+..-|..|..++..
T Consensus 122 k~trf~RkdlwK~dl~dy~~vviFgaes~m----~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 122 KSTRFRRKDLWKVDLRDYRNVVIFGAESVM----PDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred cchhhhhhhhhhccccccceEEEeehHHHH----hhhHHHHHhhCcCCCeEEEE
Confidence 356677778877766554333333333322 23333344456667666665
No 274
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.23 E-value=0.44 Score=48.34 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=42.6
Q ss_pred CCccEEEEcccccCCCH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592 188 SSVDVAVFCLSLMGINF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
..+|+++....--..++ ..++..++++++|||.+.-.. +...+...|..+||.+...
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t------------~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT------------SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee------------hHHHHHHHHHHcCCeeeec
Confidence 45888775432222233 489999999999999998653 4578899999999998763
No 275
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.01 E-value=0.038 Score=42.48 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=38.2
Q ss_pred CccEEEEcccccCC--C-----HHHHHHHHHHhcCcCcEEEEEeecCCC--CCCC------------CCCCHHHHHHHHH
Q 022592 189 SVDVAVFCLSLMGI--N-----FPNYLQEAQRVLKPSGWLLIAEVKSRF--DPNT------------GGADPNKFSKAVC 247 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~--~-----~~~~l~el~r~LkpgG~l~i~e~~~~~--~~~~------------~~~~~~~~~~~l~ 247 (294)
.||+|+|..+..|. + ...+++.+++.|+|||.|++- ..++- .... -.+.++.+...|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE-pQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE-PQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE----HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe-CCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 48999988887763 2 457999999999999999984 22210 0000 0034566777776
Q ss_pred H--CCCeEEE
Q 022592 248 D--LGFAPVS 255 (294)
Q Consensus 248 ~--~Gf~~~~ 255 (294)
+ .||..++
T Consensus 80 ~~evGF~~~e 89 (110)
T PF06859_consen 80 EPEVGFSSVE 89 (110)
T ss_dssp STTT---EEE
T ss_pred hcccceEEEE
Confidence 6 5887665
No 276
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.80 E-value=0.083 Score=42.13 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.3
Q ss_pred EEEEEcCcccHHHHHhc-----cceEEEeccC
Q 022592 144 VIADFGCGDARLAKSVK-----NKVFSFDLVS 170 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~-----~~v~gvD~s~ 170 (294)
+|||||||.|.++..++ .+++++|+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence 48999999999988776 2699999998
No 277
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=91.99 E-value=0.29 Score=44.73 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=50.6
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------CCCcEEEccCCCCC-----
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP----- 184 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------~~~~~~~~d~~~lp----- 184 (294)
++.+++.+... ++..++|.-+|.|..+..++ ..|+|+|..+ .++.++.++..++.
T Consensus 9 l~Evl~~L~~~-~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 9 LDEVVEGLNIK-PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHHHhcCcC-CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 35567777655 66799999999999888776 3799999886 26677777776543
Q ss_pred CCCCCccEEEEcccc
Q 022592 185 LNSSSVDVAVFCLSL 199 (294)
Q Consensus 185 ~~~~~fD~Vi~~~~l 199 (294)
....++|.|++...+
T Consensus 88 ~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 88 LLVTKIDGILVDLGV 102 (305)
T ss_pred cCCCcccEEEEeccC
Confidence 233568888876555
No 278
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=3.2 Score=36.82 Aligned_cols=90 Identities=13% Similarity=0.285 Sum_probs=54.2
Q ss_pred HhhccCCCCEEEEEcCcccHHHHHhc---------cceEEEeccCC--------------CC--cEEEccCCC-CC-CCC
Q 022592 135 WLKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVSN--------------DP--SVIACDMSN-TP-LNS 187 (294)
Q Consensus 135 ~l~~~~~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~~--------------~~--~~~~~d~~~-lp-~~~ 187 (294)
.+.....+..++|+|+|+..=+..|. .+++.+|+|.. .+ .-+++|.+. +. ++.
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR 151 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC
Confidence 33333345689999999987555443 26789999971 22 233444432 11 122
Q ss_pred CCccEEEE-cccccCC---CHHHHHHHHHHhcCcCcEEEEE
Q 022592 188 SSVDVAVF-CLSLMGI---NFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 188 ~~fD~Vi~-~~~l~~~---~~~~~l~el~r~LkpgG~l~i~ 224 (294)
..=-++++ ..+|-.+ +...++..+...|+||-++++.
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 33333333 3333333 4457899999999999999884
No 279
>PRK11524 putative methyltransferase; Provisional
Probab=91.50 E-value=0.25 Score=44.69 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=38.8
Q ss_pred CCCcEEEccCCCC--CCCCCCccEEEEcccccC----CC-------------HHHHHHHHHHhcCcCcEEEEE
Q 022592 171 NDPSVIACDMSNT--PLNSSSVDVAVFCLSLMG----IN-------------FPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 171 ~~~~~~~~d~~~l--p~~~~~fD~Vi~~~~l~~----~~-------------~~~~l~el~r~LkpgG~l~i~ 224 (294)
.+..++.+|+..+ .+++++||+|++..-..- .+ ...++.++.++|||||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3445777887763 466889999998644320 00 146889999999999999985
No 280
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.30 E-value=1.6 Score=39.64 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=32.4
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccC
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS 170 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~ 170 (294)
++.+++.|... ++...+|.--|.|..+..+. ..++|+|-.+
T Consensus 12 l~E~i~~L~~~-~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~ 58 (314)
T COG0275 12 LNEVVELLAPK-PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDP 58 (314)
T ss_pred HHHHHHhcccC-CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCH
Confidence 45667777766 56799999999999988876 3689999776
No 281
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=91.06 E-value=0.2 Score=44.05 Aligned_cols=72 Identities=18% Similarity=0.068 Sum_probs=41.6
Q ss_pred HHHHHHhhccC-CCCEEEEEcCcccHHHHHhc---cceEEEeccC------------------------CCCcEEEccCC
Q 022592 130 NIIVKWLKDHS-PSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACDMS 181 (294)
Q Consensus 130 ~~~~~~l~~~~-~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------------------~~~~~~~~d~~ 181 (294)
+.+++...... ...+|||.-+|-|..+..++ .+|++++-|+ .+++++.+|..
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 33555554331 12489999999999888776 5899999887 25678888887
Q ss_pred C-CCCCCCCccEEEEcccccC
Q 022592 182 N-TPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 182 ~-lp~~~~~fD~Vi~~~~l~~ 201 (294)
+ ++.++.+||+|++...+.+
T Consensus 143 ~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 143 EYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CHCCCHSS--SEEEE--S---
T ss_pred HHHhhcCCCCCEEEECCCCCC
Confidence 6 5566789999999888876
No 282
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=91.04 E-value=0.34 Score=47.85 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCcccHHHHHhc------cceEEEeccC----CCCcEEEccCCCC----C----CCCCCccEEEEccccc-
Q 022592 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNT----P----LNSSSVDVAVFCLSLM- 200 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~----~~~~~~~~d~~~l----p----~~~~~fD~Vi~~~~l~- 200 (294)
.++..|||+||.+|.|+.... ..|+|+|+.+ +++..++.|+..- + +..-..|+|++-.+-.
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnV 122 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNV 122 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCcc
Confidence 366789999999999988765 4789999988 5666666676541 1 1223458888654422
Q ss_pred ---CC-C-------HHHHHHHHHHhcCcCcEEEE
Q 022592 201 ---GI-N-------FPNYLQEAQRVLKPSGWLLI 223 (294)
Q Consensus 201 ---~~-~-------~~~~l~el~r~LkpgG~l~i 223 (294)
|. | ...+++-+...|+.||.++-
T Consensus 123 g~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 123 GGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 11 1 12566777788999999544
No 283
>PRK10742 putative methyltransferase; Provisional
Probab=90.22 E-value=0.55 Score=41.59 Aligned_cols=72 Identities=11% Similarity=-0.021 Sum_probs=48.6
Q ss_pred HHHHHHhhccCCCC--EEEEEcCcccHHHHHhc---cceEEEeccC------------------------CCCcEEEccC
Q 022592 130 NIIVKWLKDHSPSL--VIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACDM 180 (294)
Q Consensus 130 ~~~~~~l~~~~~~~--~VLDiGcG~G~~~~~l~---~~v~gvD~s~------------------------~~~~~~~~d~ 180 (294)
+.+++.+... ++. +|||+-+|.|..+..++ ..|+++|-++ .+++++.+|.
T Consensus 76 ~~l~kAvglk-~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIK-GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCC-CCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 3455555433 444 89999999999999887 4799999886 1233445555
Q ss_pred CCC-CCCCCCccEEEEcccccCC
Q 022592 181 SNT-PLNSSSVDVAVFCLSLMGI 202 (294)
Q Consensus 181 ~~l-p~~~~~fD~Vi~~~~l~~~ 202 (294)
... .-...+||+|++-..+.|.
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 332 1122479999998888874
No 284
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=90.14 E-value=5 Score=39.29 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=72.2
Q ss_pred CCcHHHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---------cceEEEeccC------------CCC----cEEEcc
Q 022592 125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS------------NDP----SVIACD 179 (294)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~------------~~~----~~~~~d 179 (294)
|...++.+++.+... +..+|+|..||+|.+..... ..++|.++.. ..+ ....+|
T Consensus 171 P~~v~~liv~~l~~~-~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 171 PREVSELIVELLDPE-PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred hHHHHHHHHHHcCCC-CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 444556666666653 55699999999998765443 1367888765 222 333333
Q ss_pred CCCCCC-----CCCCccEEEEccccc---CC-----------------------CHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 180 MSNTPL-----NSSSVDVAVFCLSLM---GI-----------------------NFPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 180 ~~~lp~-----~~~~fD~Vi~~~~l~---~~-----------------------~~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
-..-|. ..+.||+|+++.-+. |. +...++..+...|+|||...|+-...
T Consensus 250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 333222 235699988876653 10 12578999999999999777664443
Q ss_pred CCCCCCCCCCHHHHHHHHHH
Q 022592 229 RFDPNTGGADPNKFSKAVCD 248 (294)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~ 248 (294)
...... ....+.+.+-+
T Consensus 330 vlfr~~---~e~~IR~~l~~ 346 (489)
T COG0286 330 VLFRGG---AEKDIRKDLLE 346 (489)
T ss_pred cCcCCC---chHHHHHHHHh
Confidence 332221 23556555544
No 285
>PRK10458 DNA cytosine methylase; Provisional
Probab=89.62 E-value=6.5 Score=38.26 Aligned_cols=111 Identities=13% Similarity=0.199 Sum_probs=66.5
Q ss_pred CCEEEEEcCcccHHHHHhc----cceEEEeccCC-------------CCcEEEccCCCCCCC-----------------C
Q 022592 142 SLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------------DPSVIACDMSNTPLN-----------------S 187 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------------~~~~~~~d~~~lp~~-----------------~ 187 (294)
..+++|+=||.|.+...+. ..|.++|+.+. ....+.+|+..+... -
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~ 167 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHI 167 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccC
Confidence 4589999999999877664 35678888761 224556777665421 1
Q ss_pred CCccEEEEcccccCC-------------------C-HHHHHHHHHH---hcCcCcEEEEEeecCCCCCCCCCCCHHHHHH
Q 022592 188 SSVDVAVFCLSLMGI-------------------N-FPNYLQEAQR---VLKPSGWLLIAEVKSRFDPNTGGADPNKFSK 244 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~-------------------~-~~~~l~el~r---~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~ 244 (294)
..+|+++....-..+ + ...++.++.| .++| .+++.|=...+.....+.+...+..
T Consensus 168 p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kP--k~fvlENV~gl~s~~~g~~f~~i~~ 245 (467)
T PRK10458 168 PDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRP--AIFVLENVKNLKSHDKGKTFRIIMQ 245 (467)
T ss_pred CCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCC--CEEEEeCcHhhhcccccHHHHHHHH
Confidence 247888864433321 1 1113344444 4455 3555554433333333345678889
Q ss_pred HHHHCCCeEE
Q 022592 245 AVCDLGFAPV 254 (294)
Q Consensus 245 ~l~~~Gf~~~ 254 (294)
.|++.||.+.
T Consensus 246 ~L~~lGY~v~ 255 (467)
T PRK10458 246 TLDELGYDVA 255 (467)
T ss_pred HHHHcCCeEE
Confidence 9999999985
No 286
>PTZ00357 methyltransferase; Provisional
Probab=89.31 E-value=1.5 Score=44.22 Aligned_cols=125 Identities=17% Similarity=0.218 Sum_probs=77.0
Q ss_pred cHHHHHHHhcChhhHHHHHHhHHhhhccCCCcHH--------HHH------HHHhhccC---CCCEEEEEcCcccHHHHH
Q 022592 96 GKEALDYFNENPALFDMYHSGYQEQMSHWPELPV--------NII------VKWLKDHS---PSLVIADFGCGDARLAKS 158 (294)
Q Consensus 96 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~------~~~l~~~~---~~~~VLDiGcG~G~~~~~ 158 (294)
.....+.|..++-.|+.|.+........|..... ..+ +....... ....|+=+|+|-|.+...
T Consensus 638 ES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdr 717 (1072)
T PTZ00357 638 SSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDE 717 (1072)
T ss_pred chhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHH
Confidence 3445677888888899988877666655532100 000 01111111 113689999999987654
Q ss_pred hc---------cceEEEeccCC------------------------CCcEEEccCCCCCCCC-----------CCccEEE
Q 022592 159 VK---------NKVFSFDLVSN------------------------DPSVIACDMSNTPLNS-----------SSVDVAV 194 (294)
Q Consensus 159 l~---------~~v~gvD~s~~------------------------~~~~~~~d~~~lp~~~-----------~~fD~Vi 194 (294)
.. -++++|+-+++ .++++..|+..+..+. +.+|+||
T Consensus 718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVV 797 (1072)
T PTZ00357 718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIV 797 (1072)
T ss_pred HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceeh
Confidence 42 16888887741 2678889998864331 3699999
Q ss_pred EcccccC-CC--HHHHHHHHHHhcCc----CcE
Q 022592 195 FCLSLMG-IN--FPNYLQEAQRVLKP----SGW 220 (294)
Q Consensus 195 ~~~~l~~-~~--~~~~l~el~r~Lkp----gG~ 220 (294)
+-..=.+ .| -++.|..+.+.||+ +|+
T Consensus 798 SELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 798 SELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred HhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 7433222 11 35788888888887 776
No 287
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=89.31 E-value=8.5 Score=34.35 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=72.2
Q ss_pred CEEEEEcCcccHHHHHhc--c--ceEEEeccC-----------------CCCcEEEccCCC-C-------CCCCCCccEE
Q 022592 143 LVIADFGCGDARLAKSVK--N--KVFSFDLVS-----------------NDPSVIACDMSN-T-------PLNSSSVDVA 193 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~--~--~v~gvD~s~-----------------~~~~~~~~d~~~-l-------p~~~~~fD~V 193 (294)
..|+.+|||-=.-...+. . .++-+|... .+.+++.+|+.. + .+.....-++
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~ 162 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAW 162 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeee
Confidence 369999999766555553 1 344455433 355677888752 1 1222334577
Q ss_pred EEcccccCCC---HHHHHHHHHHhcCcCcEEEEEeecCC--------------------CCCCCCCCCHHHHHHHHHHCC
Q 022592 194 VFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAEVKSR--------------------FDPNTGGADPNKFSKAVCDLG 250 (294)
Q Consensus 194 i~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e~~~~--------------------~~~~~~~~~~~~~~~~l~~~G 250 (294)
++-.++++.+ ...++..+.+...||+.+++--+... ..+....++.+++..+|...|
T Consensus 163 i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 242 (260)
T TIGR00027 163 LWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAERG 242 (260)
T ss_pred eecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHCC
Confidence 7777887754 45688888888888888877432210 011112367889999999999
Q ss_pred CeEEEE
Q 022592 251 FAPVSK 256 (294)
Q Consensus 251 f~~~~~ 256 (294)
|.+...
T Consensus 243 w~~~~~ 248 (260)
T TIGR00027 243 WRASEH 248 (260)
T ss_pred CeeecC
Confidence 988764
No 288
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=89.15 E-value=1 Score=40.91 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=65.4
Q ss_pred EEEEEcCcccHHHHHhc----cceEEEeccCC-------CC-cEEEccCCCCC---CCCCCccEEEEcccccCC------
Q 022592 144 VIADFGCGDARLAKSVK----NKVFSFDLVSN-------DP-SVIACDMSNTP---LNSSSVDVAVFCLSLMGI------ 202 (294)
Q Consensus 144 ~VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------~~-~~~~~d~~~lp---~~~~~fD~Vi~~~~l~~~------ 202 (294)
+++|+=||-|.+...+. ..+.++|+.+. |. ....+|+..+. ++. .+|+++....-..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~ 80 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFPEVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKR 80 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHTEEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcccccccccccccccccccc-cceEEEeccCCceEeccccc
Confidence 68999999998877665 37889999881 11 77888888765 443 59999976544321
Q ss_pred ----CH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 203 ----NF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 203 ----~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
|. -..+-++.+.++| .+++.|=...+...........+.+.|++.||.+..
T Consensus 81 ~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~ 139 (335)
T PF00145_consen 81 KGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQW 139 (335)
T ss_dssp HCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred cccccccchhhHHHHHHHhhccc--eEEEecccceeeccccccccccccccccccceeehh
Confidence 21 1233344556677 344445333332221222457888999999998876
No 289
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=89.11 E-value=0.39 Score=43.79 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=41.9
Q ss_pred CcEEEccCCCCCCCC-------CCccEEEEcccccC---C---CHHHHHHHHHHhcCcCcEEEEEeecCCC
Q 022592 173 PSVIACDMSNTPLNS-------SSVDVAVFCLSLMG---I---NFPNYLQEAQRVLKPSGWLLIAEVKSRF 230 (294)
Q Consensus 173 ~~~~~~d~~~lp~~~-------~~fD~Vi~~~~l~~---~---~~~~~l~el~r~LkpgG~l~i~e~~~~~ 230 (294)
+.|.+.|+..+..++ ...|+|+..+++.- . .-.++|..+-..++||..|+|+|-...+
T Consensus 177 ~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSY 247 (315)
T PF11312_consen 177 VSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSY 247 (315)
T ss_pred eeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCc
Confidence 357778887765322 24688887777753 1 3458999999999999999999866554
No 290
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=88.80 E-value=0.67 Score=40.12 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=21.6
Q ss_pred CCEEEEEcCcccHHHHHhc-------cceEEEeccC
Q 022592 142 SLVIADFGCGDARLAKSVK-------NKVFSFDLVS 170 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~ 170 (294)
+..+.|-.||.|+++-.+. ..|+|-|+++
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~ 87 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDE 87 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-H
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCH
Confidence 3589999999999877664 3789999986
No 291
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=85.02 E-value=14 Score=29.26 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=56.8
Q ss_pred CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592 187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMF 266 (294)
Q Consensus 187 ~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i 266 (294)
++-+|+|+..+--.--+....|-.+.+.|..+|.+++....... .+..++.++.+....+|+..+..-.....+.-+
T Consensus 43 ddvvD~vllWwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr---~g~V~~~~I~eaA~taGL~~t~~~~v~~dWsg~ 119 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGR---PGHVEPSDIREAAPTAGLVQTKSCAVGDDWSGT 119 (127)
T ss_pred cccccEEEEEEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCC---CCCCCHHHHHHHHhhcCCeeeeeeccCCCccEE
Confidence 45578888765544457788888899999999999997644222 234678999999999999988855544544444
Q ss_pred EE
Q 022592 267 YF 268 (294)
Q Consensus 267 ~~ 268 (294)
-+
T Consensus 120 rL 121 (127)
T PF11253_consen 120 RL 121 (127)
T ss_pred Ee
Confidence 33
No 292
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.87 E-value=5.5 Score=36.78 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=69.9
Q ss_pred CEEEEEcCcccHHHHHhc----cceEEEeccCC----------CCcEEEccCCCCCCCC---CCccEEEEcccccCC---
Q 022592 143 LVIADFGCGDARLAKSVK----NKVFSFDLVSN----------DPSVIACDMSNTPLNS---SSVDVAVFCLSLMGI--- 202 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~----~~v~gvD~s~~----------~~~~~~~d~~~lp~~~---~~fD~Vi~~~~l~~~--- 202 (294)
.+++|+=||-|.+..-+. .-+.++|+.+. ...+...|+..+.... ..+|+++...--..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~a 83 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIA 83 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhhc
Confidence 579999999998776654 36778898872 2456667776543211 168999976555431
Q ss_pred -------CHH----HHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 203 -------NFP----NYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 203 -------~~~----~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
|+. -.+.++...++| .+++.|=....... ..-..+.+.+.|++.||.+..
T Consensus 84 G~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~-~~~~~~~i~~~L~~~GY~~~~ 144 (328)
T COG0270 84 GKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS-KGQTFDEIKKELEELGYGVEF 144 (328)
T ss_pred CcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc-CchHHHHHHHHHHHcCCcchH
Confidence 222 344556667788 56665533322222 334678999999999997443
No 293
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=84.74 E-value=2.8 Score=38.21 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=29.5
Q ss_pred CCEEEEEcCcccHHHHHhc-----cceEEEeccC-----------------CCCcEEEcc----CCC-CCCCCCCccEEE
Q 022592 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------------NDPSVIACD----MSN-TPLNSSSVDVAV 194 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-----------------~~~~~~~~d----~~~-lp~~~~~fD~Vi 194 (294)
..++||||||....--.|. -.++|.|+.+ ..+.++... +.. +-.+.+.||+++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 3579999999875433333 2889999987 234454332 211 223346899999
Q ss_pred EcccccC
Q 022592 195 FCLSLMG 201 (294)
Q Consensus 195 ~~~~l~~ 201 (294)
|+.-++.
T Consensus 183 CNPPFy~ 189 (299)
T PF05971_consen 183 CNPPFYS 189 (299)
T ss_dssp E-----S
T ss_pred cCCcccc
Confidence 9888775
No 294
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.13 E-value=1.8 Score=39.70 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=64.5
Q ss_pred EEEEcCcccHHHHHhc----cceEEEeccCC-------CC--cEEEccCCCCCCC-CCCccEEEEcccccC---------
Q 022592 145 IADFGCGDARLAKSVK----NKVFSFDLVSN-------DP--SVIACDMSNTPLN-SSSVDVAVFCLSLMG--------- 201 (294)
Q Consensus 145 VLDiGcG~G~~~~~l~----~~v~gvD~s~~-------~~--~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~--------- 201 (294)
|+|+-||.|.+..-+. ..+.++|+.+. +. .++.+|+.++... -..+|+++....-..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~~ 80 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRKG 80 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcccCC
Confidence 5899999998877664 25678998761 11 4556788775421 124899886544322
Q ss_pred -CCHH-HHHHHHHH---hcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 202 -INFP-NYLQEAQR---VLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 202 -~~~~-~~l~el~r---~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.+.. .++.++.+ .++| .+++.|-...+.....+.....+...|+..||.+..
T Consensus 81 ~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~ 137 (315)
T TIGR00675 81 FEDTRGTLFFEIVRILKEKKP--KFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYY 137 (315)
T ss_pred CCCchhhHHHHHHHHHhhcCC--CEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEE
Confidence 1222 33344444 4466 456655333322222223457788889999998866
No 295
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.62 E-value=1.7 Score=40.50 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=53.0
Q ss_pred CCCEEEEEcCcc-cHHHHHhc-----cceEEEeccCCCCcEE---------EccCCC-C-----CCCC-CCccEEEEccc
Q 022592 141 PSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSVI---------ACDMSN-T-----PLNS-SSVDVAVFCLS 198 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~-----~~v~gvD~s~~~~~~~---------~~d~~~-l-----p~~~-~~fD~Vi~~~~ 198 (294)
++.+|+=+|||+ |.++..++ ..|+++|.++.+..+. .....+ . .... ..+|+|+-+..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 444899999997 44444443 4889999998433221 111110 0 1111 25899886554
Q ss_pred ccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592 199 LMGINFPNYLQEAQRVLKPSGWLLIAEVK 227 (294)
Q Consensus 199 l~~~~~~~~l~el~r~LkpgG~l~i~e~~ 227 (294)
-..++..+.++++|||.+++..+.
T Consensus 248 -----~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 -----SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred -----CHHHHHHHHHHhcCCCEEEEEecc
Confidence 256899999999999999998654
No 296
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=83.48 E-value=13 Score=34.79 Aligned_cols=109 Identities=18% Similarity=0.144 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCcccHHHHHhc-----c----ceEEEeccCC---------------CCcEEEccCCCCC---------CC
Q 022592 140 SPSLVIADFGCGDARLAKSVK-----N----KVFSFDLVSN---------------DPSVIACDMSNTP---------LN 186 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~-----~----~v~gvD~s~~---------------~~~~~~~d~~~lp---------~~ 186 (294)
.|+.+|||+.+.+|.=+..+. . .|++-|.... ++.+...|+...| ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 478899999999998554443 2 6778787761 2222222222221 12
Q ss_pred CCCccEEEEcccccC------C-C-----------------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHH
Q 022592 187 SSSVDVAVFCLSLMG------I-N-----------------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKF 242 (294)
Q Consensus 187 ~~~fD~Vi~~~~l~~------~-~-----------------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~ 242 (294)
...||-|++.---.+ . + -...+....++||+||.++.+.-.-.-.. +..-+
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpie-----NEaVV 308 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIE-----NEAVV 308 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchh-----hHHHH
Confidence 345777765322211 0 1 12578888999999999999864322211 33455
Q ss_pred HHHHHHCCCeE
Q 022592 243 SKAVCDLGFAP 253 (294)
Q Consensus 243 ~~~l~~~Gf~~ 253 (294)
..+|+..|-.+
T Consensus 309 ~~~L~~~~~~~ 319 (375)
T KOG2198|consen 309 QEALQKVGGAV 319 (375)
T ss_pred HHHHHHhcCcc
Confidence 67777766433
No 297
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=83.39 E-value=12 Score=33.02 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=58.4
Q ss_pred CCCEEEEEcCcccH-HHHHhc---cceEEEeccC--------------CCCcEEEccCCC-CCCC-CCCccEEEEccccc
Q 022592 141 PSLVIADFGCGDAR-LAKSVK---NKVFSFDLVS--------------NDPSVIACDMSN-TPLN-SSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~G~-~~~~l~---~~v~gvD~s~--------------~~~~~~~~d~~~-lp~~-~~~fD~Vi~~~~l~ 200 (294)
.+.+||-||-+.-. ++..+. .+|+.+|+.+ -.+.....|+.+ +|-. .++||+++.....-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 57789999966543 222222 5899999987 146677888865 4421 47899988754422
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCH---HHHHHHHHHCCCeEEEEec
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADP---NKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~---~~~~~~l~~~Gf~~~~~~~ 258 (294)
-....-++......|+..|...+..+.... .+. ..+.+.+.+.||.+..+-.
T Consensus 124 ~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~------~s~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 124 PEGLKLFLSRGIEALKGEGCAGYFGFTHKE------ASPDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp HHHHHHHHHHHHHTB-STT-EEEEEE-TTT--------HHHHHHHHHHHHTS--EEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEecCc------CcHHHHHHHHHHHHHCCcCHHHHHh
Confidence 223457888999999887744333332211 122 3677888899998888543
No 298
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=82.92 E-value=12 Score=30.93 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=49.7
Q ss_pred ccCCCCC----CCCCCccEEEEcccccC-----C--C-------HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCH
Q 022592 178 CDMSNTP----LNSSSVDVAVFCLSLMG-----I--N-------FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADP 239 (294)
Q Consensus 178 ~d~~~lp----~~~~~fD~Vi~~~~l~~-----~--~-------~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~ 239 (294)
.|+..+. +....||.|+.++.--. . + ...++..+..+|+++|.+.|+-..... ++.
T Consensus 60 VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------y~~ 133 (166)
T PF10354_consen 60 VDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------YDS 133 (166)
T ss_pred CCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------Ccc
Confidence 3555443 34678999998876544 1 1 247899999999999999997543322 222
Q ss_pred HHHHHHHHHCCCeEEE
Q 022592 240 NKFSKAVCDLGFAPVS 255 (294)
Q Consensus 240 ~~~~~~l~~~Gf~~~~ 255 (294)
=.+..+...+||.+..
T Consensus 134 W~i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 134 WNIEELAAEAGLVLVR 149 (166)
T ss_pred ccHHHHHHhcCCEEEE
Confidence 3456778889998877
No 299
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=82.73 E-value=7 Score=36.65 Aligned_cols=87 Identities=23% Similarity=0.380 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCC---------CcEEEccCCC-C-----CC-CCCCccEEEEcc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSND---------PSVIACDMSN-T-----PL-NSSSVDVAVFCL 197 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~---------~~~~~~d~~~-l-----p~-~~~~fD~Vi~~~ 197 (294)
.++.+||.+|||. |..+..++ . .++++|.++.. ..++...-.+ + .+ ....+|+|+-+-
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 4667899999987 66666554 2 48888877521 1222111110 0 11 123689988753
Q ss_pred ccc----------------CCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 198 SLM----------------GINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 198 ~l~----------------~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
.-+ +.+....+.++.++|+|+|.+++...
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 211 12456788999999999999998753
No 300
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=81.57 E-value=4 Score=32.32 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=49.6
Q ss_pred HHHHhhccCCCCEEEEEcCcccH-HHHHhc---cceEEEeccCC----CCcEEEccCCCCCCC-CCCccEEEEcccccCC
Q 022592 132 IVKWLKDHSPSLVIADFGCGDAR-LAKSVK---NKVFSFDLVSN----DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGI 202 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~-~~~~l~---~~v~gvD~s~~----~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~ 202 (294)
+.+++.......+|+|||-|.=. .+..|. -.|+++|+.+. .+.++..|+.+..+. -...|+|.+... ..
T Consensus 4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiRP--P~ 81 (127)
T PF03686_consen 4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIRP--PP 81 (127)
T ss_dssp HHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES----T
T ss_pred HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeCC--Ch
Confidence 44445433345599999999754 344554 27999999987 888999999874322 134788876432 12
Q ss_pred CHHHHHHHHHHhcCcCcEEEEEeecCCC
Q 022592 203 NFPNYLQEAQRVLKPSGWLLIAEVKSRF 230 (294)
Q Consensus 203 ~~~~~l~el~r~LkpgG~l~i~e~~~~~ 230 (294)
+.+..+.++++.+ |.-++|..+....
T Consensus 82 El~~~il~lA~~v--~adlii~pL~~e~ 107 (127)
T PF03686_consen 82 ELQPPILELAKKV--GADLIIRPLGGES 107 (127)
T ss_dssp TSHHHHHHHHHHH--T-EEEEE-BTTB-
T ss_pred HHhHHHHHHHHHh--CCCEEEECCCCCC
Confidence 4455555555533 5677776655433
No 301
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=81.27 E-value=1.9 Score=35.10 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=44.8
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------CCCcEEEccCCC-CCC---CCCCccEEE
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSN-TPL---NSSSVDVAV 194 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------~~~~~~~~d~~~-lp~---~~~~fD~Vi 194 (294)
+...+... + .-|||+|=|+|+.--.|. ..++.+|-.- +.-.++.+|+.+ +|. -....-++.
T Consensus 21 a~~~v~~~-~-G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laH 98 (160)
T PF12692_consen 21 AAAQVAGL-P-GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAH 98 (160)
T ss_dssp HHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEE
T ss_pred HHHHhcCC-C-CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEE
Confidence 34444433 3 479999999998665554 4788888543 345688888864 332 122233333
Q ss_pred EcccccCCCHH-----HHHHHHHHhcCcCcEEEEE
Q 022592 195 FCLSLMGINFP-----NYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 195 ~~~~l~~~~~~-----~~l~el~r~LkpgG~l~i~ 224 (294)
+....+..+.. .+-.-+..+|.|||+++-.
T Consensus 99 aD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 99 ADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp E----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 33332221111 2223456789999988774
No 302
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=80.00 E-value=5.8 Score=35.23 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 254 (294)
-..+|..++..|.|||++++-|+.. + + -...+.+.+.+.|....
T Consensus 191 T~~aLe~lyprl~~GGiIi~DDY~~---~---g-cr~AvdeF~~~~gi~~~ 234 (248)
T PF05711_consen 191 TKDALEFLYPRLSPGGIIIFDDYGH---P---G-CRKAVDEFRAEHGITDP 234 (248)
T ss_dssp HHHHHHHHGGGEEEEEEEEESSTTT---H---H-HHHHHHHHHHHTT--S-
T ss_pred HHHHHHHHHhhcCCCeEEEEeCCCC---h---H-HHHHHHHHHHHcCCCCc
Confidence 4578999999999999999965443 1 0 23567777888887543
No 303
>PHA01634 hypothetical protein
Probab=79.99 E-value=3.7 Score=32.73 Aligned_cols=30 Identities=13% Similarity=-0.010 Sum_probs=25.6
Q ss_pred CCCEEEEEcCcccHHHHHhc----cceEEEeccC
Q 022592 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS 170 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~ 170 (294)
.+.+|+|||++-|.-+.+++ ..|+++++++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 56799999999998887775 4899999987
No 304
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=79.51 E-value=15 Score=33.17 Aligned_cols=82 Identities=16% Similarity=0.283 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCC--------CcEEEccCCCC------CCCCCCccEEEEccccc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSND--------PSVIACDMSNT------PLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~--------~~~~~~d~~~l------p~~~~~fD~Vi~~~~l~ 200 (294)
.++.+||..|+|. |..+..++ ..|++++.++.. +..+..+.... ......+|+|+.+..
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g-- 241 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG-- 241 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC--
Confidence 3566888888763 55555554 267888776522 12222111110 123456898886532
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
....+.++.+.|+++|.++....
T Consensus 242 ---~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 ---TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ---CHHHHHHHHHHhhcCCEEEEECC
Confidence 24678889999999999988643
No 305
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.34 E-value=11 Score=37.22 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=54.8
Q ss_pred CCCEEEEEcCcccH-HHHHhc----cceEEEeccCC--------CCcEEEccCCC-----------CC----------CC
Q 022592 141 PSLVIADFGCGDAR-LAKSVK----NKVFSFDLVSN--------DPSVIACDMSN-----------TP----------LN 186 (294)
Q Consensus 141 ~~~~VLDiGcG~G~-~~~~l~----~~v~gvD~s~~--------~~~~~~~d~~~-----------lp----------~~ 186 (294)
++.+||=+|||.-. .+...+ ..|+++|.++. ...++..|..+ +. +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~ 243 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA 243 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence 57899999999744 333333 47999999873 22333222211 00 01
Q ss_pred C--CCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEEee
Q 022592 187 S--SSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 187 ~--~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
+ ..+|+||.+...... .+..+.+++.+.+||||.++.+-.
T Consensus 244 ~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 244 EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1 358999987665442 444446999999999999888644
No 306
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=78.95 E-value=2.5 Score=40.71 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=49.9
Q ss_pred CEEEEEcCcccHH--HHHhc-----cceEEEeccCCCC---------------cEEEc-cCCC--CCCC-CCCccEEEEc
Q 022592 143 LVIADFGCGDARL--AKSVK-----NKVFSFDLVSNDP---------------SVIAC-DMSN--TPLN-SSSVDVAVFC 196 (294)
Q Consensus 143 ~~VLDiGcG~G~~--~~~l~-----~~v~gvD~s~~~~---------------~~~~~-d~~~--lp~~-~~~fD~Vi~~ 196 (294)
..+.|+|.|.|.- +..+. ..++.||.|.+.. .++.. -+.. +|.. ...||+|++.
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 4678888886653 33332 3677888876211 11111 1111 3332 3459999999
Q ss_pred ccccCC----CHHHHHHHHH-HhcCcCcEEEEEe
Q 022592 197 LSLMGI----NFPNYLQEAQ-RVLKPSGWLLIAE 225 (294)
Q Consensus 197 ~~l~~~----~~~~~l~el~-r~LkpgG~l~i~e 225 (294)
+.+++. ....+.+.++ ...++||.+++++
T Consensus 282 h~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 282 HKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred eeeeccCCchhhhhhhHHHHHhccCCCceEEEEe
Confidence 999983 4445555555 4668899999975
No 307
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=77.61 E-value=4.8 Score=36.60 Aligned_cols=85 Identities=16% Similarity=0.122 Sum_probs=56.1
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC-------------------CCCcEEEccCCCC--CCCCCCccEEE
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT--PLNSSSVDVAV 194 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~-------------------~~~~~~~~d~~~l--p~~~~~fD~Vi 194 (294)
...++|=||.|.|.+.+... ..+.-+|+.. ..+.+..+|-..+ -.+.++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 44689999999999887665 2455555443 3556667765332 12367899988
Q ss_pred Eccccc-CC----CHHHHHHHHHHhcCcCcEEEEEe
Q 022592 195 FCLSLM-GI----NFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 195 ~~~~l~-~~----~~~~~l~el~r~LkpgG~l~i~e 225 (294)
.--+=. .. =...++..+.+.||++|++++..
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 532211 11 12467788999999999998864
No 308
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=76.75 E-value=1.9 Score=38.80 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=61.7
Q ss_pred CCCEEEEEcCcccHHHHHhc-----cceEEEeccC---------------CCCcEEEccCCCCCCC---CCCccEEEEcc
Q 022592 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SSSVDVAVFCL 197 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~---------------~~~~~~~~d~~~lp~~---~~~fD~Vi~~~ 197 (294)
.+..|+=+|- .-..+.+++ .++..+|+.+ .+++.+.-|+.+ |+| ...||+++...
T Consensus 152 ~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTDP 229 (354)
T COG1568 152 EGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecCc
Confidence 5567999983 223333332 4788899887 467888888876 333 25799876432
Q ss_pred cccCCCHHHHHHHHHHhcCcC---cEEEEEeecCCCCCCCCCCCHHHHHH-HHHHCCCeEEE
Q 022592 198 SLMGINFPNYLQEAQRVLKPS---GWLLIAEVKSRFDPNTGGADPNKFSK-AVCDLGFAPVS 255 (294)
Q Consensus 198 ~l~~~~~~~~l~el~r~Lkpg---G~l~i~e~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~ 255 (294)
.--......++..-...|+-- |++.++-..+... -.-++.. ++.+.||-++.
T Consensus 230 peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressid------kW~eiQr~lIn~~gvVITd 285 (354)
T COG1568 230 PETIKALKLFLGRGIATLKGEGCAGYFGITRRESSID------KWREIQRILINEMGVVITD 285 (354)
T ss_pred hhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHH------HHHHHHHHHHHhcCeeeHh
Confidence 211112234444445566665 6777754332221 1134555 67788887776
No 309
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=76.73 E-value=3.9 Score=38.45 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhc----cceEEEeccC
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS 170 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~----~~v~gvD~s~ 170 (294)
++..+..-.+-..|+|+|.|.|+++..+. -.|+++|-|.
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred HHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 33333333344589999999999999887 3899999886
No 310
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=76.68 E-value=6.8 Score=35.97 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=47.0
Q ss_pred CCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCCC--------cEEE----ccCCCCCCCCCCccEEEEcccccCC
Q 022592 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDP--------SVIA----CDMSNTPLNSSSVDVAVFCLSLMGI 202 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~~--------~~~~----~d~~~lp~~~~~fD~Vi~~~~l~~~ 202 (294)
++.+||=+|||. |.++..++ . .|+++|.++.+. ..+. .++..+....+.+|+|+-+..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 567888888752 23333333 2 588888876321 1111 111111111234888876533
Q ss_pred CHHHHHHHHHHhcCcCcEEEEEee
Q 022592 203 NFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 203 ~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
-...+..+.++|++||.++++..
T Consensus 245 -~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -CHHHHHHHHHHhhcCCEEEEEcc
Confidence 23577888999999999998754
No 311
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=75.39 E-value=3.5 Score=35.03 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCcccHHHHHhc---cceEEEeccC
Q 022592 140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS 170 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~ 170 (294)
.++..|||.=||+|..+.+.. .+.+|+|+++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 467899999999999777665 5899999875
No 312
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=75.20 E-value=3.5 Score=38.28 Aligned_cols=96 Identities=22% Similarity=0.173 Sum_probs=66.5
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc---cceEEEeccCC------------------------CCcEEEccCC
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN------------------------DPSVIACDMS 181 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~------------------------~~~~~~~d~~ 181 (294)
+..+.+.++...++..|+|-=.|||.++...+ +.|+|.||.-. -+.++.+|..
T Consensus 196 LSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~s 275 (421)
T KOG2671|consen 196 LSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFS 275 (421)
T ss_pred HHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeeccc
Confidence 44455555555688999999999999877666 58889888751 1246677887
Q ss_pred CCCCC-CCCccEEEEccccc------------------------CC---C-------HHHHHHHHHHhcCcCcEEEEE
Q 022592 182 NTPLN-SSSVDVAVFCLSLM------------------------GI---N-------FPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 182 ~lp~~-~~~fD~Vi~~~~l~------------------------~~---~-------~~~~l~el~r~LkpgG~l~i~ 224 (294)
+.|+. ...||.|||....- |. + ....|.-.+++|..||++++-
T Consensus 276 n~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 276 NPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred CcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 76654 45799999854331 10 0 234566778999999999883
No 313
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=75.18 E-value=3 Score=39.44 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=42.8
Q ss_pred CCcEEEccCCCCC--CCCCCccEEEEcccccCCC---HHHHHHHHHHhcCcCcEEEEEe
Q 022592 172 DPSVIACDMSNTP--LNSSSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 172 ~~~~~~~d~~~lp--~~~~~fD~Vi~~~~l~~~~---~~~~l~el~r~LkpgG~l~i~e 225 (294)
++.++.+++.+.. .+++++|.++......|.+ ..+.+.++.+.++|||++++-.
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 5566777766532 4678999999999998865 4578899999999999999954
No 314
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.83 E-value=5.7 Score=38.58 Aligned_cols=134 Identities=16% Similarity=0.065 Sum_probs=78.4
Q ss_pred hhccCCCCEEEEEcCcccHHHHHhc------cceEEEeccCCCCcE----------------EEccCCC----CCCCCCC
Q 022592 136 LKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVSNDPSV----------------IACDMSN----TPLNSSS 189 (294)
Q Consensus 136 l~~~~~~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~~~~~----------------~~~d~~~----lp~~~~~ 189 (294)
+.....+.+|||.=|++|.-+...+ ..|++.|.++..+.. ...|+.. -+.....
T Consensus 104 ~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 104 LKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred hhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccc
Confidence 3333456789999999998665554 377888888732221 1222221 1222356
Q ss_pred ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec--CCCCCC-------CCC--------------CCHHHHHHHH
Q 022592 190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK--SRFDPN-------TGG--------------ADPNKFSKAV 246 (294)
Q Consensus 190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~--~~~~~~-------~~~--------------~~~~~~~~~l 246 (294)
||+|=... +-.+..+|+.+.+.++.||.|.++--. ...... .+. +-...+....
T Consensus 184 FDvIDLDP---yGs~s~FLDsAvqav~~gGLL~vT~TD~aVL~gn~pe~C~~kYG~~~lr~~~chE~aLRill~~i~~~A 260 (525)
T KOG1253|consen 184 FDVIDLDP---YGSPSPFLDSAVQAVRDGGLLCVTCTDMAVLAGNAPEKCYSKYGASILRMKYCHEMALRILLAAIARAA 260 (525)
T ss_pred cceEecCC---CCCccHHHHHHHHHhhcCCEEEEEecchHhhccCChhhHHHhcCcccccchhhhHHHHHHHHHHHHHHH
Confidence 77754311 124578999999999999999996311 111000 000 1223444555
Q ss_pred HHCCCeEEEEeccCCeEEEEEEEECC
Q 022592 247 CDLGFAPVSKDFSNKMFIMFYFKKKE 272 (294)
Q Consensus 247 ~~~Gf~~~~~~~~~~~f~~i~~~k~~ 272 (294)
...|..|+-.--....||+-+|.++-
T Consensus 261 ary~r~IePLlSis~DFYVRVFVRV~ 286 (525)
T KOG1253|consen 261 ARYGRYVEPLLSLSIDFYVRVFVRVY 286 (525)
T ss_pred HHhCCcceeeEEEEeeeEEEEEEEEE
Confidence 66777777655556778888887754
No 315
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=73.76 E-value=21 Score=30.58 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=70.5
Q ss_pred HHhhccCCCCEEEEEcCcccHHHHHhc---------cceEEEeccC----------CCCcEEEccCCCCCC------CCC
Q 022592 134 KWLKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS----------NDPSVIACDMSNTPL------NSS 188 (294)
Q Consensus 134 ~~l~~~~~~~~VLDiGcG~G~~~~~l~---------~~v~gvD~s~----------~~~~~~~~d~~~lp~------~~~ 188 (294)
+.|-.. ....|+++|.-.|.-+..++ .+|.++|++- +++.++.++-.+... ..+
T Consensus 63 ellw~~-~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~ 141 (237)
T COG3510 63 ELLWEL-QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKN 141 (237)
T ss_pred HHHHhc-CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhc
Confidence 333333 44589999999988776665 2788999875 456777776655321 122
Q ss_pred CccEEEEcccccCC--CHHHHHHHHHHhcCcCcEEEEEeecCCCCC--CC----CCCCHHHHHHHHHHCC
Q 022592 189 SVDVAVFCLSLMGI--NFPNYLQEAQRVLKPSGWLLIAEVKSRFDP--NT----GGADPNKFSKAVCDLG 250 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~--~~~~~l~el~r~LkpgG~l~i~e~~~~~~~--~~----~~~~~~~~~~~l~~~G 250 (294)
.+--|+.+.--.|. ...+.++.+.++|..|-++++-+-.-.-.+ .. +.-..+.+...++..+
T Consensus 142 ~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p 211 (237)
T COG3510 142 EYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREFP 211 (237)
T ss_pred CCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhCC
Confidence 23344444444443 456778888899999999988652221111 11 1124456677777766
No 316
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=73.62 E-value=22 Score=31.86 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=50.1
Q ss_pred HHHHHHhhcc----CCCCEEEEEcCcccH--------HHHHhcc--ceEEEeccC---CCCcEEEccCCCCCCCCCCccE
Q 022592 130 NIIVKWLKDH----SPSLVIADFGCGDAR--------LAKSVKN--KVFSFDLVS---NDPSVIACDMSNTPLNSSSVDV 192 (294)
Q Consensus 130 ~~~~~~l~~~----~~~~~VLDiGcG~G~--------~~~~l~~--~v~gvD~s~---~~~~~~~~d~~~lp~~~~~fD~ 192 (294)
..++++|... +-.++||.+|+|+-. +-++|.. .++-.|+.+ +....+.+|...+.. +..+|+
T Consensus 46 tQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~-~~k~Dl 124 (299)
T PF06460_consen 46 TQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMP-PDKFDL 124 (299)
T ss_dssp HHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEE-SS-EEE
T ss_pred HHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCC-CCcccE
Confidence 3466776542 456899999998543 2233333 445556554 344567788887765 467999
Q ss_pred EEEcccc---cC-----CC---H-HHHHHHHHHhcCcCcEEEEE
Q 022592 193 AVFCLSL---MG-----IN---F-PNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 193 Vi~~~~l---~~-----~~---~-~~~l~el~r~LkpgG~l~i~ 224 (294)
|++...- .+ .+ . .-+..-+...|+-||.+.|-
T Consensus 125 IiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 125 IISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp EEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 9986551 01 11 1 23445566788999999884
No 317
>PRK11524 putative methyltransferase; Provisional
Probab=73.36 E-value=6.2 Score=35.58 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcc-CCCCEEEEEcCcccHHHHHhc---cceEEEeccCC
Q 022592 128 PVNIIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN 171 (294)
Q Consensus 128 ~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~ 171 (294)
|+..+-..|... .++..|||.=||+|..+.+.. .+.+|+|+++.
T Consensus 194 P~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~ 241 (284)
T PRK11524 194 PEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSE 241 (284)
T ss_pred hHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHH
Confidence 344433333322 478899999999999777654 58999999883
No 318
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=73.23 E-value=11 Score=32.39 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=49.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCCcE-------EEccCCCCC-------CCCCCccEEEEccccc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP-------LNSSSVDVAVFCLSLM 200 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~~~-------~~~d~~~lp-------~~~~~fD~Vi~~~~l~ 200 (294)
.++.+||-+|+|. |..+..++ ..|++++.++....+ ...+..... .....+|+|+.+..-
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~- 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG- 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC-
Confidence 3677999999986 44444333 378888876522111 011111111 123568998865431
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
...+..+.+.|+++|.++....
T Consensus 212 ----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 212 ----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ----HHHHHHHHHhcccCCEEEEEcc
Confidence 2567788899999999988653
No 319
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=72.90 E-value=6.3 Score=37.21 Aligned_cols=95 Identities=18% Similarity=0.162 Sum_probs=62.6
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccHHHHHhcc-----ceEEEeccCC------------------------CCcEEEccC
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-----KVFSFDLVSN------------------------DPSVIACDM 180 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~~------------------------~~~~~~~d~ 180 (294)
..+++.+... +++...|+|.|-|.....++. .-+|+++... .+..+.+++
T Consensus 182 ~si~dEl~~g-~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 182 RSIVDELKLG-PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHhccC-CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3355555544 677899999999998777762 4577777661 234455554
Q ss_pred CCCC---CCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 181 SNTP---LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 181 ~~lp---~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
.+.- .-....++|+++.+..-.+...-+.++..-+++|.+++-.+
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccc
Confidence 3321 11345788888777655555555669999999999888764
No 320
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=72.61 E-value=16 Score=32.87 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCcccHHHHHhcc---ceEEEeccC--------CCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHH
Q 022592 140 SPSLVIADFGCGDARLAKSVKN---KVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL 208 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~~---~v~gvD~s~--------~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l 208 (294)
.+++..+|+|+.+|.++-.|.. .|++||-.. ..++.+..|-..........|-.+|..+ ..|.++-
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV---EkP~rv~ 286 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV---EKPARVA 286 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh---cCcHHHH
Confidence 4788999999999999988873 799999765 3455555665554333456788777655 2344555
Q ss_pred HHHHHhcCcC
Q 022592 209 QEAQRVLKPS 218 (294)
Q Consensus 209 ~el~r~Lkpg 218 (294)
..+..+|..|
T Consensus 287 ~li~~Wl~nG 296 (358)
T COG2933 287 ALIAKWLVNG 296 (358)
T ss_pred HHHHHHHHcc
Confidence 5556666554
No 321
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=70.70 E-value=59 Score=26.85 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=58.9
Q ss_pred HHHHHHHhhcc-CCCCEEEEEcCcccHHHHHh----ccceEEEeccCC-----CCcEEEccCCC---CC--CCCCCccEE
Q 022592 129 VNIIVKWLKDH-SPSLVIADFGCGDARLAKSV----KNKVFSFDLVSN-----DPSVIACDMSN---TP--LNSSSVDVA 193 (294)
Q Consensus 129 ~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~l----~~~v~gvD~s~~-----~~~~~~~d~~~---lp--~~~~~fD~V 193 (294)
.+.+++.+... ....+|+-|||=+-.....- ...++.+|+... .-+|+.-|... +| + .++||+|
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l-~~~~d~v 90 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEEL-KGKFDVV 90 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhc-CCCceEE
Confidence 34455555542 24569999999887665544 137788887661 11466666543 22 2 4689999
Q ss_pred EEcccccCCCHH-HHHHHHHHhcCcCcEEEEE
Q 022592 194 VFCLSLMGINFP-NYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 194 i~~~~l~~~~~~-~~l~el~r~LkpgG~l~i~ 224 (294)
|+-.-+.-.+.. +....+.-++++++.+++.
T Consensus 91 v~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 91 VIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 987776333333 4445555566888888886
No 322
>PRK13699 putative methylase; Provisional
Probab=70.56 E-value=8.4 Score=33.65 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=31.5
Q ss_pred cHHHHHHHHhhc-cCCCCEEEEEcCcccHHHHHhc---cceEEEeccC
Q 022592 127 LPVNIIVKWLKD-HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS 170 (294)
Q Consensus 127 ~~~~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~ 170 (294)
.|++.+...|.. ..++..|||.=||+|..+.+.. ..++|+|+++
T Consensus 148 kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~ 195 (227)
T PRK13699 148 KPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195 (227)
T ss_pred CcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCH
Confidence 344444444432 2477899999999999877665 5899999987
No 323
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=68.85 E-value=8.3 Score=35.40 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=43.8
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcccHHHHHhc-----cceEEEeccC--------------CCCcEEEccCCCCC-----
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP----- 184 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~l~-----~~v~gvD~s~--------------~~~~~~~~d~~~lp----- 184 (294)
+..+++.|... ++..++|.--|.|..+..+. ..++|+|..+ .++.++.+++.++.
T Consensus 9 l~Evl~~L~~~-~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 9 LKEVLEALNPK-PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHHhhCcC-CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 45677777765 66799999999999988876 4899999776 35667777766543
Q ss_pred C-CCCCccEEEEcccc
Q 022592 185 L-NSSSVDVAVFCLSL 199 (294)
Q Consensus 185 ~-~~~~fD~Vi~~~~l 199 (294)
. ....+|.|++...+
T Consensus 88 ~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 88 LNGINKVDGILFDLGV 103 (310)
T ss_dssp TTTTS-EEEEEEE-S-
T ss_pred ccCCCccCEEEEcccc
Confidence 2 23467877765444
No 324
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=68.31 E-value=6.9 Score=34.54 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=21.7
Q ss_pred CEEEEEcCcccHHHHHhc-------------cceEEEeccC
Q 022592 143 LVIADFGCGDARLAKSVK-------------NKVFSFDLVS 170 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~-------------~~v~gvD~s~ 170 (294)
..|+|+|+|+|.++..+. -+++.+++|+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp 60 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP 60 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH
Confidence 589999999999988764 1578899997
No 325
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=65.88 E-value=16 Score=33.02 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=46.2
Q ss_pred CCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCCCcEEEc----cCCCCCCCCCCccEEEEcccccCCCHHHHHHH
Q 022592 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSVIAC----DMSNTPLNSSSVDVAVFCLSLMGINFPNYLQE 210 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~~~~~~~----d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~e 210 (294)
++.+||=+|||. |.++..++ . .++++|..+.+...... |.... ....+|+|+-+.. -...+..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G-----~~~~~~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASG-----DPSLIDT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCC-----CHHHHHH
Confidence 455788888763 44444444 2 35667766533221111 11110 1235888876533 2456788
Q ss_pred HHHhcCcCcEEEEEee
Q 022592 211 AQRVLKPSGWLLIAEV 226 (294)
Q Consensus 211 l~r~LkpgG~l~i~e~ 226 (294)
+.++|+++|.++++..
T Consensus 217 ~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 217 LVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHhhhcCcEEEEEee
Confidence 8999999999998754
No 326
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=64.97 E-value=41 Score=23.04 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEE
Q 022592 205 PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFY 267 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~ 267 (294)
.-.+....+-|.+|..|.+..-. ..+..++..+++..|++++........|.+++
T Consensus 14 ll~~~~~l~~l~~G~~l~v~~d~--------~~~~~di~~~~~~~g~~~~~~~~~~~~~~i~I 68 (70)
T PF01206_consen 14 LLKAKKALKELPPGEVLEVLVDD--------PAAVEDIPRWCEENGYEVVEVEEEGGEYRILI 68 (70)
T ss_dssp HHHHHHHHHTSGTT-EEEEEESS--------TTHHHHHHHHHHHHTEEEEEEEESSSSEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEECC--------ccHHHHHHHHHHHCCCEEEEEEEeCCEEEEEE
Confidence 34455666677888877664311 12458899999999999888877777776654
No 327
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.15 E-value=85 Score=28.95 Aligned_cols=21 Identities=10% Similarity=-0.020 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHCCCeEEEEe
Q 022592 237 ADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 237 ~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
.+.+....-+.++||+.+...
T Consensus 256 ~s~Esq~~Rf~~~Gw~~v~a~ 276 (335)
T KOG2918|consen 256 NSIESQRSRFLKAGWEYVIAV 276 (335)
T ss_pred ccHHHHHHHHHhcCCceeehh
Confidence 477888888999999888743
No 328
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=63.04 E-value=24 Score=32.46 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=46.8
Q ss_pred CCCEEEEEcCcc-cHHHHHhc----cceEEEec---cCC--------CCcEEEccCCCCC----CCCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGD-ARLAKSVK----NKVFSFDL---VSN--------DPSVIACDMSNTP----LNSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~---s~~--------~~~~~~~d~~~lp----~~~~~fD~Vi~~~~l~ 200 (294)
++.+||=+|+|. |.++..++ ..|++++. ++. ...++ +..... .....+|+|+-+..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g-- 247 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG-- 247 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC--
Confidence 567899888863 33444443 37888876 331 12222 111111 01235888776543
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
-...+.++.++|++||.++++..
T Consensus 248 ---~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ---VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ---CHHHHHHHHHHccCCcEEEEEec
Confidence 13478889999999999988754
No 329
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=62.32 E-value=49 Score=22.81 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEE
Q 022592 206 NYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFY 267 (294)
Q Consensus 206 ~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~ 267 (294)
-.++...+-+.+|+.|.+..-. ..+..++..++++.|++++........|.+++
T Consensus 14 i~~k~~l~~l~~G~~l~V~~dd--------~~s~~di~~~~~~~g~~~~~~~~~~~~~~~~I 67 (69)
T cd03423 14 MMLHKKVRKMKPGDTLLVLATD--------PSTTRDIPKFCTFLGHELLAQETEDEPYRYLI 67 (69)
T ss_pred HHHHHHHHcCCCCCEEEEEeCC--------CchHHHHHHHHHHcCCEEEEEEEcCCEEEEEE
Confidence 3445556667888877774211 12568999999999999998666666665554
No 330
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.78 E-value=46 Score=30.85 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCcccH-HHHHhc-----cceEEEeccCCCCcE--------EEccCC-C-C---------CCCCCCccEEE
Q 022592 140 SPSLVIADFGCGDAR-LAKSVK-----NKVFSFDLVSNDPSV--------IACDMS-N-T---------PLNSSSVDVAV 194 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~-~~~~l~-----~~v~gvD~s~~~~~~--------~~~d~~-~-l---------p~~~~~fD~Vi 194 (294)
.++.+||=+|+|+=. ++...+ .+|+.+|+++.++++ +.-+.. . . .+....+|+++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 478899999999643 333222 489999999843321 111110 0 0 12234588887
Q ss_pred EcccccCCCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 195 FCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 195 ~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
.+..+ ...++.....+++||.++++.+..
T Consensus 248 dCsG~-----~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 248 DCSGA-----EVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred EccCc-----hHHHHHHHHHhccCCEEEEeccCC
Confidence 66554 567778888999999988886544
No 331
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=61.44 E-value=58 Score=23.37 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=46.5
Q ss_pred ccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEE
Q 022592 190 VDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFY 267 (294)
Q Consensus 190 fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~ 267 (294)
.|..+-...+...-|.--++...+-|++|+.|.+..-. ..+..++..+.+..|+++.........|.+++
T Consensus 8 ~~~~lD~~Gl~CP~Pll~~kk~l~~l~~G~~l~V~~dd--------~~~~~di~~~~~~~G~~~~~~~~~~g~~~~~I 77 (81)
T PRK00299 8 PDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIADD--------PATTRDIPSFCRFMDHELLAQETEQLPYRYLI 77 (81)
T ss_pred cCeEEecCCCCCCHHHHHHHHHHHcCCCCCEEEEEeCC--------ccHHHHHHHHHHHcCCEEEEEEecCCEEEEEE
Confidence 45444444444455556677777888999987774311 12558899999999999988666555555543
No 332
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=60.59 E-value=27 Score=31.63 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=46.7
Q ss_pred CCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCCC---------cEEEcc---CCCCCCCCCCccEEEEcccccCC
Q 022592 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDP---------SVIACD---MSNTPLNSSSVDVAVFCLSLMGI 202 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~~---------~~~~~d---~~~lp~~~~~fD~Vi~~~~l~~~ 202 (294)
++..||-.|||. |..+..++ . .+++++.++... .++..+ +..+......+|+|+.+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~--- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA--- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC---
Confidence 567888888764 44444443 2 577877665211 111111 11111112348998865431
Q ss_pred CHHHHHHHHHHhcCcCcEEEEEe
Q 022592 203 NFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 203 ~~~~~l~el~r~LkpgG~l~i~e 225 (294)
...+..+.+.|+++|.++...
T Consensus 242 --~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 --PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred --HHHHHHHHHHHhcCCEEEEEe
Confidence 346788999999999998764
No 333
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=59.99 E-value=54 Score=22.60 Aligned_cols=54 Identities=9% Similarity=-0.075 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592 205 PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMF 266 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i 266 (294)
.-.++...+-|++|+.|.+.--. ..+..++..+++..|++++........|.++
T Consensus 13 vl~~kkal~~l~~G~~l~V~~d~--------~~a~~di~~~~~~~G~~~~~~~~~~~~~~~~ 66 (69)
T cd03420 13 ILKLKKEIDKLQDGEQLEVKASD--------PGFARDAQAWCKSTGNTLISLETEKGKVKAV 66 (69)
T ss_pred HHHHHHHHHcCCCCCEEEEEECC--------ccHHHHHHHHHHHcCCEEEEEEecCCEEEEE
Confidence 34455666778899977774211 1256899999999999999866666666555
No 334
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=59.91 E-value=77 Score=26.04 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=36.7
Q ss_pred CCCEEEEEcCcccHHHHHhc----c--ceEEEeccCC-------CCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHH
Q 022592 141 PSLVIADFGCGDARLAKSVK----N--KVFSFDLVSN-------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY 207 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~----~--~v~gvD~s~~-------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~ 207 (294)
.+.+|+=.|+|....+.... . -.+.+|.++. ..++-..+.+.+ .....|+|+.. -|.-....
T Consensus 67 ~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~l--~~~~pd~vivl---aw~y~~EI 141 (160)
T PF08484_consen 67 EGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEEL--KERKPDYVIVL---AWNYKDEI 141 (160)
T ss_dssp TT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG----SS--SEEEES----GGGHHHH
T ss_pred cCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHHH--hhCCCCEEEEc---ChhhHHHH
Confidence 45689999999876543222 1 3467888772 222222222222 23456876642 22234677
Q ss_pred HHHHHHhcCcCcEEEEE
Q 022592 208 LQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 208 l~el~r~LkpgG~l~i~ 224 (294)
++.+...+..||.|++.
T Consensus 142 ~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 142 IEKLREYLERGGKFIVP 158 (160)
T ss_dssp HHHTHHHHHTT-EEEE-
T ss_pred HHHHHHHHhcCCEEEEe
Confidence 77778888899999873
No 335
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=58.04 E-value=76 Score=23.68 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=54.0
Q ss_pred CcccHHHHHhc------c-ceEEEeccC--------CCCcEEEccCCCCC----CCCCCccEEEEcccccCCCHH--HHH
Q 022592 150 CGDARLAKSVK------N-KVFSFDLVS--------NDPSVIACDMSNTP----LNSSSVDVAVFCLSLMGINFP--NYL 208 (294)
Q Consensus 150 cG~G~~~~~l~------~-~v~gvD~s~--------~~~~~~~~d~~~lp----~~~~~fD~Vi~~~~l~~~~~~--~~l 208 (294)
||.|.++..++ . .|+.+|..+ ..+.++.+|..+.. ..-..+|.|++... +.. -.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~~ 79 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLLI 79 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHHH
Confidence 55566666664 2 689999886 46788999987732 22346787776533 222 233
Q ss_pred HHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEE
Q 022592 209 QEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPV 254 (294)
Q Consensus 209 ~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 254 (294)
....+-+-|...+++.- ......+.|+++|...+
T Consensus 80 ~~~~r~~~~~~~ii~~~------------~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 80 ALLARELNPDIRIIARV------------NDPENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHTTTSEEEEEE------------SSHHHHHHHHHTT-SEE
T ss_pred HHHHHHHCCCCeEEEEE------------CCHHHHHHHHHCCcCEE
Confidence 44556667777777643 12566777888887654
No 336
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=57.46 E-value=57 Score=22.05 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592 208 LQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMF 266 (294)
Q Consensus 208 l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i 266 (294)
+....+-+.+|..+.+..-. ..+..++..+++..|+.+.........|.++
T Consensus 16 ~~~~l~~l~~g~~l~v~~d~--------~~~~~~i~~~~~~~g~~~~~~~~~~~~~~i~ 66 (69)
T cd00291 16 TKKALEKLKSGEVLEVLLDD--------PGAVEDIPAWAKETGHEVLEVEEEGGVYRIL 66 (69)
T ss_pred HHHHHhcCCCCCEEEEEecC--------CcHHHHHHHHHHHcCCEEEEEEEeCCEEEEE
Confidence 33444557888887775211 1246899999999999988766655555554
No 337
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=56.91 E-value=8.4 Score=37.04 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=21.1
Q ss_pred CEEEEEcCcccHHHHHhc----cceEEEeccC
Q 022592 143 LVIADFGCGDARLAKSVK----NKVFSFDLVS 170 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~----~~v~gvD~s~ 170 (294)
..|||||+|||.++.... ..|++++.-.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~Evfk 99 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFK 99 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhc
Confidence 368999999999887664 3778777543
No 338
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=56.39 E-value=25 Score=38.15 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=50.8
Q ss_pred CCEEEEEcCcccH-HHHHhcc--ceEEEeccC---------CCCcEEEccCCCCCC-CCCCccEEEEcccccC------C
Q 022592 142 SLVIADFGCGDAR-LAKSVKN--KVFSFDLVS---------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG------I 202 (294)
Q Consensus 142 ~~~VLDiGcG~G~-~~~~l~~--~v~gvD~s~---------~~~~~~~~d~~~lp~-~~~~fD~Vi~~~~l~~------~ 202 (294)
...+||+|.|+-. .+..+.. -|+.+|.-+ ....|++.|.....+ -...+|.+.|.++|-. .
T Consensus 823 ~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~a~~ 902 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAASANV 902 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHHCT-
T ss_pred cceEEEccCCccceeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhcCCC
Confidence 4689999999754 4444442 788999776 355789999876443 3457999999999963 5
Q ss_pred CHHHHHHHHHHhcCcCcE
Q 022592 203 NFPNYLQEAQRVLKPSGW 220 (294)
Q Consensus 203 ~~~~~l~el~r~LkpgG~ 220 (294)
+....++.+.+.+++.|.
T Consensus 903 tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 903 TLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp -HHHHHHHHHHHHHCTT-
T ss_pred cHHHHHHHHHHHHHhCCc
Confidence 788999999999988774
No 339
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=55.51 E-value=20 Score=30.22 Aligned_cols=45 Identities=29% Similarity=0.373 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC-CeEEE
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG-FAPVS 255 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~ 255 (294)
....+.++.|+|+|||.+++.--..... . .-+..+++..| |.+..
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~------~-~~~~~~~~~~g~~~~~~ 80 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIA------G-FLFELALEIFGGFFLRN 80 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEEC------T-HHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhh------H-HHHHHHHHHhhhhheec
Confidence 3578999999999999988852111111 0 23445566667 86655
No 340
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=55.32 E-value=19 Score=33.22 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=54.3
Q ss_pred CCEEEEEcCcc-cHHHHHhc----cceEEEeccCC-----------CCcEEEccCCCCCCCCCCccEEEEcccccC-CCH
Q 022592 142 SLVIADFGCGD-ARLAKSVK----NKVFSFDLVSN-----------DPSVIACDMSNTPLNSSSVDVAVFCLSLMG-INF 204 (294)
Q Consensus 142 ~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~-----------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~-~~~ 204 (294)
..+|.=||.|. |..+..++ +.|+-+|+|.+ ++++......++...-...|+||..--+-. -.|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaP 247 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAP 247 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCc
Confidence 34677788874 44444333 69999999963 334444444444333456899885433333 477
Q ss_pred HHHHHHHHHhcCcCcEEEEE
Q 022592 205 PNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~ 224 (294)
.-+.+++...++||+.++=+
T Consensus 248 kLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 248 KLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred eehhHHHHHhcCCCcEEEEE
Confidence 78889999999999977654
No 341
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=55.28 E-value=9.2 Score=34.75 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=39.7
Q ss_pred CCCccEEEEcccccC-CCHHHHHHHHHHhcCcCcEEEEEeecCCCCC---CCCCCCHHHHHHHHHHCCCeEEE
Q 022592 187 SSSVDVAVFCLSLMG-INFPNYLQEAQRVLKPSGWLLIAEVKSRFDP---NTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 187 ~~~fD~Vi~~~~l~~-~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~---~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.+-||+|+.+....| ..+. +.++++|+|.|++- ....... +.-.--.+.+.+++..+||+.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvE-taKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVE-TAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEE-cchhheeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 367999998777655 3443 77889999988883 2211110 00001335778999999997653
No 342
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=55.23 E-value=67 Score=22.16 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592 206 NYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMF 266 (294)
Q Consensus 206 ~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i 266 (294)
--.+...+-+.+|..|.+..-. ..+..++..+++..|+++.........|.++
T Consensus 14 i~~kkal~~l~~G~~l~V~~d~--------~~s~~ni~~~~~~~g~~v~~~~~~~~~~~~~ 66 (69)
T cd03422 14 IATLEALPSLKPGEILEVISDC--------PQSINNIPIDARNHGYKVLAIEQSGPTIRYL 66 (69)
T ss_pred HHHHHHHHcCCCCCEEEEEecC--------chHHHHHHHHHHHcCCEEEEEEecCCEEEEE
Confidence 3445566677888877664211 1356899999999999998766555555554
No 343
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=54.69 E-value=31 Score=26.35 Aligned_cols=36 Identities=33% Similarity=0.590 Sum_probs=28.9
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
..+|+|+-+.. -...++....+|+|+|.++++....
T Consensus 57 ~~~d~vid~~g-----~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVG-----SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSS-----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecC-----cHHHHHHHHHHhccCCEEEEEEccC
Confidence 46999886543 2679999999999999999986554
No 344
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=54.42 E-value=43 Score=30.85 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCCCcE-------EEccCCCCC-------C-CCCCccEEEEccc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTP-------L-NSSSVDVAVFCLS 198 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~~~~-------~~~d~~~lp-------~-~~~~fD~Vi~~~~ 198 (294)
.++.+||=.|||. |.++..++ . .|+++|.++.+..+ ...+..... . ....+|+|+-+..
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g 254 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVG 254 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCC
Confidence 4677888888753 33333333 2 48888877632211 011111100 1 1235888875433
Q ss_pred ccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 199 LMGINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 199 l~~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
-...+..+.+.|++||.++++..
T Consensus 255 -----~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 255 -----RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -----CHHHHHHHHHHhccCCEEEEECC
Confidence 13567788899999999998754
No 345
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=53.79 E-value=37 Score=30.59 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----cc-eEEEeccCCCCcE-------EEccCCCCC------CCCCCccEEEEccccc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----NK-VFSFDLVSNDPSV-------IACDMSNTP------LNSSSVDVAVFCLSLM 200 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~~-v~gvD~s~~~~~~-------~~~d~~~lp------~~~~~fD~Vi~~~~l~ 200 (294)
.++..||-+|+|. |..+..++ .. +++++.++....+ ...+..... .....+|+|+.+..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~-- 235 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATG-- 235 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCC--
Confidence 3567888888642 33333333 14 6777665522111 111111111 12356899886532
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
....+.++.++|+++|.++....
T Consensus 236 ---~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 ---VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ---ChHHHHHHHHHHhcCCEEEEEec
Confidence 14678888999999999987643
No 346
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=53.74 E-value=28 Score=33.87 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=49.3
Q ss_pred CCCEEEEEcCcccHHHHHhccceEEEecc-----------CCCC------cEEEccCCCCCCCCCCccEEEEcccccCCC
Q 022592 141 PSLVIADFGCGDARLAKSVKNKVFSFDLV-----------SNDP------SVIACDMSNTPLNSSSVDVAVFCLSLMGIN 203 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~~~v~gvD~s-----------~~~~------~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~ 203 (294)
.+.+|+=||||+=..+..+.-+..|++.+ .... -|...++.+ .-...|+|++..... .
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~E---a~~~ADvVviLlPDt--~ 109 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEE---LIPQADLVINLTPDK--Q 109 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHH---HHHhCCEEEEcCChH--H
Confidence 56799999999755555554444555444 2111 111111111 124579988766655 2
Q ss_pred HHHHHHHHHHhcCcCcEEEEE
Q 022592 204 FPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~ 224 (294)
...+..++...||||..|.++
T Consensus 110 q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 110 HSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred HHHHHHHHHhhCCCCCEEEec
Confidence 556668999999999999986
No 347
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=53.71 E-value=40 Score=31.78 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=27.5
Q ss_pred HHHHHHhhccCCCCEEEEEcCcccH----HHHHhcc--------ceEEEec
Q 022592 130 NIIVKWLKDHSPSLVIADFGCGDAR----LAKSVKN--------KVFSFDL 168 (294)
Q Consensus 130 ~~~~~~l~~~~~~~~VLDiGcG~G~----~~~~l~~--------~v~gvD~ 168 (294)
..|++.+... ...+|+|+|.|.|. +...|+. ++||++.
T Consensus 100 qaIleA~~g~-~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 100 QAILEAFEGE-RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred HHHHHHhccC-cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 4466666655 55689999999996 4445541 7899998
No 348
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=53.59 E-value=15 Score=33.65 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
...+|..+..+|+|||+|+|+.+++
T Consensus 219 L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 219 LEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCc
Confidence 4578999999999999999998775
No 349
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=51.82 E-value=30 Score=30.58 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=34.4
Q ss_pred CCCEEEEEcCcccHHHHHhcc-----ceEEEeccCC-----------------CCcEEEc-cCCC----CCCCCCCccEE
Q 022592 141 PSLVIADFGCGDARLAKSVKN-----KVFSFDLVSN-----------------DPSVIAC-DMSN----TPLNSSSVDVA 193 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~~-----~v~gvD~s~~-----------------~~~~~~~-d~~~----lp~~~~~fD~V 193 (294)
+..++||||.|.--.--.+.. ..+|.|+++. .+.+... |-.. +--.++.||++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 455799999886543333321 5677777761 1222211 1111 11225789999
Q ss_pred EEcccccC
Q 022592 194 VFCLSLMG 201 (294)
Q Consensus 194 i~~~~l~~ 201 (294)
+|+..+|.
T Consensus 158 lCNPPFh~ 165 (292)
T COG3129 158 LCNPPFHD 165 (292)
T ss_pred ecCCCcch
Confidence 99988874
No 350
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=51.58 E-value=58 Score=29.71 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCCcE-------EEccCCCCCCCCCCccEEEEcccccCCCHHHH
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTPLNSSSVDVAVFCLSLMGINFPNY 207 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~~~-------~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~ 207 (294)
.++.+||=.|+|. |.++..++ ..|++++.++.+..+ ...+.... ..+.+|+++.+... ...
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~--~~~~~d~~i~~~~~-----~~~ 236 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDT--PPEPLDAAILFAPA-----GGL 236 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecccccc--CcccceEEEECCCc-----HHH
Confidence 4677899899753 23333333 368888877632211 01111111 12357876543221 357
Q ss_pred HHHHHHhcCcCcEEEEEee
Q 022592 208 LQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 208 l~el~r~LkpgG~l~i~e~ 226 (294)
+....++|++||.++++..
T Consensus 237 ~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 237 VPPALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHHHHhhCCCcEEEEEec
Confidence 8889999999999998764
No 351
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=50.75 E-value=34 Score=32.76 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=51.5
Q ss_pred HHHHHHHhhccCCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCCc------EEEccCCCCCCCCCCccEEEEcc
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPS------VIACDMSNTPLNSSSVDVAVFCL 197 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~~------~~~~d~~~lp~~~~~fD~Vi~~~ 197 (294)
++.+++......++.+|+=+|+|. |.....++ ..|+.+|.++.+.. +...+..+. -..+|+|+.+.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~---v~~aDVVI~at 265 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEA---VKEGDIFVTTT 265 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHH---HcCCCEEEECC
Confidence 344444443334678999999996 33222222 47888998874321 111111111 13479988653
Q ss_pred cccCCCHHHHHHH-HHHhcCcCcEEEEEe
Q 022592 198 SLMGINFPNYLQE-AQRVLKPSGWLLIAE 225 (294)
Q Consensus 198 ~l~~~~~~~~l~e-l~r~LkpgG~l~i~e 225 (294)
. . ...+.. ..+.+++||.++.+.
T Consensus 266 G----~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 266 G----N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred C----C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 2 2 345554 589999999998865
No 352
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=50.75 E-value=20 Score=32.94 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=48.6
Q ss_pred CCCEEEEEcCcc-cHHHHHhc------cceEEEeccCCCCcEEEc-cCC-CC-CCCC-CCccEEEEcccccCCCHHHHHH
Q 022592 141 PSLVIADFGCGD-ARLAKSVK------NKVFSFDLVSNDPSVIAC-DMS-NT-PLNS-SSVDVAVFCLSLMGINFPNYLQ 209 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~------~~v~gvD~s~~~~~~~~~-d~~-~l-p~~~-~~fD~Vi~~~~l~~~~~~~~l~ 209 (294)
++.+||=+|||. |.++..++ ..|+++|.++.+.++... +.. .. .+.+ ..+|+|+-+-. .......+.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G--~~~~~~~~~ 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVG--GRGSQSAIN 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCC--CCccHHHHH
Confidence 577899999874 33332221 368899988754332111 100 00 1111 24788775432 111245788
Q ss_pred HHHHhcCcCcEEEEEee
Q 022592 210 EAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 210 el~r~LkpgG~l~i~e~ 226 (294)
...++|++||.++++.+
T Consensus 241 ~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 241 QIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHhCcCCcEEEEEee
Confidence 89999999999998754
No 353
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=50.07 E-value=67 Score=24.34 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592 205 PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 258 (294)
..+++++.+.|+||...++...... +.+.+.+.+++.|-+++....
T Consensus 42 d~~~~ev~~~L~~GssAl~~lv~~~--------~~d~v~~~l~~~gg~v~~t~l 87 (102)
T PF06897_consen 42 DEFIKEVGEALKPGSSALFLLVDEA--------TEDKVDAALRKFGGKVLRTSL 87 (102)
T ss_pred HHHHHHHHhhcCCCceEEEEEeccC--------CHHHHHHHHHhcCCEEEeccC
Confidence 5789999999999998888765432 458899999999988876544
No 354
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=49.51 E-value=18 Score=32.39 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCcccHHHHHhcc----------ceEEEeccCC---------------CCcEEEccCCCCCCC---C---C
Q 022592 140 SPSLVIADFGCGDARLAKSVKN----------KVFSFDLVSN---------------DPSVIACDMSNTPLN---S---S 188 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~~----------~v~gvD~s~~---------------~~~~~~~d~~~lp~~---~---~ 188 (294)
.+...++|+|||.|.++.+++. .++.||-... .+.-+..|+.++.+. . .
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~l~~~~~~~~~ 96 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLDLSKLPELQND 96 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccchhhcccccCC
Confidence 3566899999999999888761 5677887651 234456677664421 1 1
Q ss_pred CccEEEEcccccCCCHHHHHHHHHHhcC-------cCcEEEEE
Q 022592 189 SVDVAVFCLSLMGINFPNYLQEAQRVLK-------PSGWLLIA 224 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~~~~~~l~el~r~Lk-------pgG~l~i~ 224 (294)
.-.+|..+==|-...-+-+|+-+.+..+ +.|.++..
T Consensus 97 ~~~vv~isKHLCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~ 139 (259)
T PF05206_consen 97 EKPVVAISKHLCGAATDLALRCLLNSQKLSEGNGSVRGIVIAP 139 (259)
T ss_pred CCcEEEEEccccccchhHHHHhhccCccccccCCccCeEEEEe
Confidence 1223332222223344556666666554 46666664
No 355
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=49.30 E-value=43 Score=33.06 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=52.0
Q ss_pred CCCEEEEEcCccc-HHHHHhc----cceEEEeccCC--------CCcEEEccCCC-----------------------CC
Q 022592 141 PSLVIADFGCGDA-RLAKSVK----NKVFSFDLVSN--------DPSVIACDMSN-----------------------TP 184 (294)
Q Consensus 141 ~~~~VLDiGcG~G-~~~~~l~----~~v~gvD~s~~--------~~~~~~~d~~~-----------------------lp 184 (294)
++.+||=+|||.- ..+..++ ..|+++|.+.. ...++..|..+ ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 5579999999864 3333332 46888898872 12333333211 11
Q ss_pred CCCCCccEEEEcccccCC-CHHHHHHHHHHhcCcCcEEEEE
Q 022592 185 LNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 185 ~~~~~fD~Vi~~~~l~~~-~~~~~l~el~r~LkpgG~l~i~ 224 (294)
-.-..+|+|+.+..+... .|.-..+++.+.+|||+.++-+
T Consensus 243 e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 012459999877655553 4556778899999999986643
No 356
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=49.22 E-value=47 Score=25.00 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHCCCeEEEEeccCCeEEE
Q 022592 237 ADPNKFSKAVCDLGFAPVSKDFSNKMFIM 265 (294)
Q Consensus 237 ~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~ 265 (294)
...+++.+.+..+||++.........||+
T Consensus 61 ~~e~~l~~~l~~~g~~~~r~~ris~gFY~ 89 (97)
T PF07109_consen 61 HREEDLRRALAAAGWRIGRTERISSGFYI 89 (97)
T ss_pred eCHHHHHHHHHhCCCeeeecccccCcChH
Confidence 47789999999999999987766655553
No 357
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=48.37 E-value=21 Score=32.64 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
...+|..+..+|+|||+++|+.+++
T Consensus 215 L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 215 LERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCc
Confidence 4688999999999999999998765
No 358
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.56 E-value=1.1e+02 Score=23.97 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcccH-HHHHhcc---ceEEEeccCC----CCcEEEccCCCCCCC-CCCccEEEEcccccCCCHHHHHHHH
Q 022592 141 PSLVIADFGCGDAR-LAKSVKN---KVFSFDLVSN----DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGINFPNYLQEA 211 (294)
Q Consensus 141 ~~~~VLDiGcG~G~-~~~~l~~---~v~gvD~s~~----~~~~~~~d~~~lp~~-~~~fD~Vi~~~~l~~~~~~~~l~el 211 (294)
...+|++||.|-=. .+..|+. .++++|+.+. .+.++..|+.+.... -...|+|.+.. .+++....+
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppEl~~~i 87 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYSIR-----PPPELQSAI 87 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccccCcccceEEEccCCCccHHHhhCccceeecC-----CCHHHHHHH
Confidence 33599999988543 3445543 6899999984 455889999874432 12367766532 234444444
Q ss_pred HHhcCc-CcEEEEEeecC
Q 022592 212 QRVLKP-SGWLLIAEVKS 228 (294)
Q Consensus 212 ~r~Lkp-gG~l~i~e~~~ 228 (294)
.++.+. |.-++|..+..
T Consensus 88 ldva~aVga~l~I~pL~G 105 (129)
T COG1255 88 LDVAKAVGAPLYIKPLTG 105 (129)
T ss_pred HHHHHhhCCCEEEEecCC
Confidence 444433 44566655443
No 359
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=46.30 E-value=1.4e+02 Score=26.74 Aligned_cols=80 Identities=8% Similarity=0.012 Sum_probs=46.4
Q ss_pred CCCCEEEEEcC--cccHHHHHhc----cceEEEeccCCCC--------c-EEEccC-CCC-----CCCCCCccEEEEccc
Q 022592 140 SPSLVIADFGC--GDARLAKSVK----NKVFSFDLVSNDP--------S-VIACDM-SNT-----PLNSSSVDVAVFCLS 198 (294)
Q Consensus 140 ~~~~~VLDiGc--G~G~~~~~l~----~~v~gvD~s~~~~--------~-~~~~d~-~~l-----p~~~~~fD~Vi~~~~ 198 (294)
.++.+||=.|+ |.|..+..++ .+|++++.++.+. . ++..+- ... ....+.+|+|+-+..
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G 216 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG 216 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence 46778888885 3455555554 3677777665221 1 111110 010 011235888876433
Q ss_pred ccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 199 LMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 199 l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
...+..+.++|+++|.++.+.
T Consensus 217 ------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 217 ------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred ------HHHHHHHHHHhCcCcEEEEec
Confidence 345688899999999999864
No 360
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=45.57 E-value=24 Score=33.06 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCEEEEEcCcccHHHHHhc-------------cceEEEeccC
Q 022592 141 PSLVIADFGCGDARLAKSVK-------------NKVFSFDLVS 170 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-------------~~v~gvD~s~ 170 (294)
....|+|||.|.|.++..+. ..++.|++|+
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 34589999999999887664 2678889987
No 361
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=45.33 E-value=70 Score=28.51 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=46.1
Q ss_pred cEEEccCCC-CCCCCC---CccEEEEcccccC-CCH----HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHH
Q 022592 174 SVIACDMSN-TPLNSS---SVDVAVFCLSLMG-INF----PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSK 244 (294)
Q Consensus 174 ~~~~~d~~~-lp~~~~---~fD~Vi~~~~l~~-~~~----~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~ 244 (294)
.+..+|+.. +|.-+. .+|+.+.. ++.- .|| ..++.++++..+|||.+.-.. +.--+..
T Consensus 149 ~l~~gd~~~~~p~~~~~~~~~dAwflD-gFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~s------------sA~~vRr 215 (252)
T COG4121 149 GLVIGDAGDGIPPVPRRRPGTDAWFLD-GFRPVKNPEMWEDELLNLMARIPYRDPTLATFA------------AAIAVRR 215 (252)
T ss_pred eeeeeehhhcCCcccccccCccEEecC-CccccCChhhccHHHHHHHHhhcCCCCceechH------------HHHHHHH
Confidence 345666643 343333 57775532 2222 254 488999999999999886632 3345678
Q ss_pred HHHHCCCeEEEE
Q 022592 245 AVCDLGFAPVSK 256 (294)
Q Consensus 245 ~l~~~Gf~~~~~ 256 (294)
-|+++||++...
T Consensus 216 ~L~~aGF~v~~r 227 (252)
T COG4121 216 RLEQAGFTVEKR 227 (252)
T ss_pred HHHHcCceeeec
Confidence 899999999884
No 362
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=44.53 E-value=1.6e+02 Score=26.37 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCc-ccHHHHHhc----cceEEEeccCCCCc--------EEEccCC-CCC-CCCCCccEEEEcccccCCCH
Q 022592 140 SPSLVIADFGCG-DARLAKSVK----NKVFSFDLVSNDPS--------VIACDMS-NTP-LNSSSVDVAVFCLSLMGINF 204 (294)
Q Consensus 140 ~~~~~VLDiGcG-~G~~~~~l~----~~v~gvD~s~~~~~--------~~~~d~~-~lp-~~~~~fD~Vi~~~~l~~~~~ 204 (294)
.++..||-+||| .|..+..++ ..|++++.+..... .+..+.. ... -..+.+|+++.+.. -
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~-----~ 235 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV-----S 235 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-----c
Confidence 356688888886 444443333 26777776653211 1111100 000 01235888886532 1
Q ss_pred HHHHHHHHHhcCcCcEEEEEe
Q 022592 205 PNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~e 225 (294)
...+..+.+.|+++|.++...
T Consensus 236 ~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 236 GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred HHHHHHHHHhcccCCEEEEEC
Confidence 357788899999999888764
No 363
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=43.30 E-value=81 Score=27.43 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----cc-eEEEeccCCCCcEE--------EccCCCCCCCCCCccEEEEcccccCCCHH
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----NK-VFSFDLVSNDPSVI--------ACDMSNTPLNSSSVDVAVFCLSLMGINFP 205 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~~-v~gvD~s~~~~~~~--------~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~ 205 (294)
.++.+||-.|||. |..+..++ .. |++++.++....+. .............+|+|+.+.. ..
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~-----~~ 170 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASG-----SP 170 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccC-----Ch
Confidence 3567888888764 33443333 24 88887665322110 0000000112345888875422 14
Q ss_pred HHHHHHHHhcCcCcEEEEEee
Q 022592 206 NYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 206 ~~l~el~r~LkpgG~l~i~e~ 226 (294)
..+....+.|+++|.++....
T Consensus 171 ~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 171 SALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred HHHHHHHHHhcCCcEEEEEec
Confidence 577888999999999987643
No 364
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=43.15 E-value=1.1e+02 Score=28.15 Aligned_cols=79 Identities=19% Similarity=0.154 Sum_probs=43.8
Q ss_pred CCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCC---------cEEEccCCC---CCCCCCCccEEEEcccccCCC
Q 022592 141 PSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDP---------SVIACDMSN---TPLNSSSVDVAVFCLSLMGIN 203 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~---------~~~~~d~~~---lp~~~~~fD~Vi~~~~l~~~~ 203 (294)
++.+||=.|+|. |.++..++ ..+++++.+.... ..+. +..+ +....+.+|+|+-+..
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi-~~~~~~~~~~~~~~~D~vid~~g----- 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFL-VSTDPEKMKAAIGTMDYIIDTVS----- 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEE-cCCCHHHHHhhcCCCCEEEECCC-----
Confidence 566787788752 33333333 3677777665321 1111 1110 0000124788775432
Q ss_pred HHHHHHHHHHhcCcCcEEEEEe
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e 225 (294)
-...+..+.++|++||.++++.
T Consensus 257 ~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CHHHHHHHHHHhcCCcEEEEeC
Confidence 2346788899999999998764
No 365
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=42.99 E-value=51 Score=30.34 Aligned_cols=80 Identities=10% Similarity=0.021 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCc--ccHHHHHhc----cceEEEeccCCCCc---------EEEccCC---CCC-----CCCCCccEEEEc
Q 022592 140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPS---------VIACDMS---NTP-----LNSSSVDVAVFC 196 (294)
Q Consensus 140 ~~~~~VLDiGcG--~G~~~~~l~----~~v~gvD~s~~~~~---------~~~~d~~---~lp-----~~~~~fD~Vi~~ 196 (294)
.++.+||=.|++ .|.++..++ .+|++++.++.+.. .+. |.. ++. .....+|+|+-+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi-~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAF-NYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEE-ECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 467789988873 455555554 36788776652211 111 111 100 112358888765
Q ss_pred ccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 197 LSLMGINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 197 ~~l~~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
.. ...+..+.++|++||.++++..
T Consensus 236 vG------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 236 VG------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC------HHHHHHHHHHhccCCEEEEECc
Confidence 33 3577889999999999988653
No 366
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=42.81 E-value=33 Score=32.44 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=50.1
Q ss_pred CCEEEEEcCcccHHHHHhc------cceEEEeccCC-----------------CCcEEEccCCCCC-CCCCCccEEEEcc
Q 022592 142 SLVIADFGCGDARLAKSVK------NKVFSFDLVSN-----------------DPSVIACDMSNTP-LNSSSVDVAVFCL 197 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~------~~v~gvD~s~~-----------------~~~~~~~d~~~lp-~~~~~fD~Vi~~~ 197 (294)
..+|||.=+|+|.=+...+ ..|+.-|++++ .+.+...|+..+- .....||+|=...
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 4589999999997443332 47899999982 2344455554321 2356688765321
Q ss_pred cccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 198 SLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 198 ~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
+-.+..+|..+.+.++.||.|.++
T Consensus 130 ---fGSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 130 ---FGSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp ---SS--HHHHHHHHHHEEEEEEEEEE
T ss_pred ---CCCccHhHHHHHHHhhcCCEEEEe
Confidence 125679999999999999999997
No 367
>PRK11018 hypothetical protein; Provisional
Probab=42.45 E-value=1.2e+02 Score=21.47 Aligned_cols=69 Identities=12% Similarity=-0.040 Sum_probs=43.2
Q ss_pred cEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEE
Q 022592 191 DVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFY 267 (294)
Q Consensus 191 D~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~ 267 (294)
|..+-...+..+-|.--.+...+-|++|..|.+..-. ..+..++..++++.|++++........|.+++
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~G~~L~V~~d~--------~~a~~di~~~~~~~G~~v~~~~~~~g~~~~~I 76 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKKGEILEVVSDC--------PQSINNIPLDARNHGYTVLDIQQDGPTIRYLI 76 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCCCCEEEEEeCC--------ccHHHHHHHHHHHcCCEEEEEEecCCeEEEEE
Confidence 4444344444443444455566778899877664211 12558899999999999987665555565553
No 368
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=42.32 E-value=16 Score=33.53 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
...+|..+..+|+|||+++|+.+++
T Consensus 220 L~~~L~~a~~~L~~gGrl~VISFHS 244 (310)
T PF01795_consen 220 LERGLEAAPDLLKPGGRLVVISFHS 244 (310)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecc
Confidence 4678999999999999999998764
No 369
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=42.29 E-value=2e+02 Score=25.59 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=46.1
Q ss_pred CCCCEEEEEcC--cccHHHHHhc----cceEEEeccCCC--------Cc-EEEccCCCC-----CCCCCCccEEEEcccc
Q 022592 140 SPSLVIADFGC--GDARLAKSVK----NKVFSFDLVSND--------PS-VIACDMSNT-----PLNSSSVDVAVFCLSL 199 (294)
Q Consensus 140 ~~~~~VLDiGc--G~G~~~~~l~----~~v~gvD~s~~~--------~~-~~~~d~~~l-----p~~~~~fD~Vi~~~~l 199 (294)
.++..||=.|+ |.|..+..++ ..|++++.++.+ +. ++...-.++ ......+|+|+-+..
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g- 220 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVG- 220 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCC-
Confidence 46678887774 3444554444 367777765521 11 111111110 011245888875433
Q ss_pred cCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 200 MGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 200 ~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
...+..+.++|+++|.++...
T Consensus 221 -----~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 -----GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred -----HHHHHHHHHhhccCCEEEEEc
Confidence 356788999999999998764
No 370
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=40.74 E-value=83 Score=24.26 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=40.1
Q ss_pred HHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 208 LQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 208 l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
+.++...|+..|+=+++|+..+-.+..++++.+.+...+..+|..-+...
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~ 51 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLP 51 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeech
Confidence 45677789999999999977665555778999999999999998766643
No 371
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=38.61 E-value=67 Score=29.89 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=36.0
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG 250 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G 250 (294)
..||+|+....=.-....-.|..+.+.|+|||.++++.-.... ...+.++++..+
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g--------~~s~~k~~~~~~ 129 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRSG--------VRSAEKMLADYA 129 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEecccc--------HHHHHHHHHHhc
Confidence 5699988653322223457788999999999999998543322 245566666543
No 372
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.55 E-value=1.6e+02 Score=26.64 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=25.2
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
..+|+|+-+... ...+..+.++|+++|.++....
T Consensus 233 ~~~d~vld~~g~-----~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 233 KGPDVVIECTGA-----ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCCCEEEECCCC-----HHHHHHHHHHhhcCCEEEEEcc
Confidence 458998865431 3478889999999999887643
No 373
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=38.52 E-value=61 Score=29.31 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=24.4
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
..+|+|+.+.. ....+.++.+.|+++|.++...
T Consensus 235 ~~~d~vld~~g-----~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 235 RGVDCVIEAVG-----FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCCcEEEEccC-----CHHHHHHHHHHhhcCCEEEEEc
Confidence 56898886432 1257888899999999988653
No 374
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=38.36 E-value=79 Score=21.96 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHCCCeEEEEeccC
Q 022592 235 GGADPNKFSKAVCDLGFAPVSKDFSN 260 (294)
Q Consensus 235 ~~~~~~~~~~~l~~~Gf~~~~~~~~~ 260 (294)
+..+..+++++|++.||..+...-++
T Consensus 5 p~~~~ke~ik~Le~~Gf~~vrqkGSH 30 (66)
T COG1724 5 PRMKAKEVIKALEKDGFQLVRQKGSH 30 (66)
T ss_pred CcCCHHHHHHHHHhCCcEEEEeecce
Confidence 34678999999999999998865554
No 375
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=37.39 E-value=1.7e+02 Score=26.71 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=50.2
Q ss_pred CCCEEEEEcCcc-cHH-HHHhc----cceEEEeccCCCC-------cEEEccCCCCCCCCCCccEEEEcccccCCCHHHH
Q 022592 141 PSLVIADFGCGD-ARL-AKSVK----NKVFSFDLVSNDP-------SVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY 207 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~-~~~l~----~~v~gvD~s~~~~-------~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~ 207 (294)
++.+|+=||+|. |.. +..+. ..|+.+|.+.... .....+..++.-.-..+|+|+++-.-.+. ...
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~--~~~ 254 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY--AKI 254 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch--HHH
Confidence 577999999974 222 22222 3678888876321 00111111111111347999987664443 333
Q ss_pred HHHHHHhcCcCcEEEEEeecC--CCCCCCC------CCCHHHHHHHHH
Q 022592 208 LQEAQRVLKPSGWLLIAEVKS--RFDPNTG------GADPNKFSKAVC 247 (294)
Q Consensus 208 l~el~r~LkpgG~l~i~e~~~--~~~~~~~------~~~~~~~~~~l~ 247 (294)
+..+.... +++-.+++|+.. ...+... .++.+++..+.+
T Consensus 255 ~~~~~~~~-~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~ 301 (311)
T cd05213 255 VERAMKKR-SGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVE 301 (311)
T ss_pred HHHHHhhC-CCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHH
Confidence 34333333 333344445442 2333222 257777776554
No 376
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=37.17 E-value=12 Score=27.92 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=9.6
Q ss_pred EEEEcCcccHHH
Q 022592 145 IADFGCGDARLA 156 (294)
Q Consensus 145 VLDiGcG~G~~~ 156 (294)
-+|||||.|...
T Consensus 6 NIDIGcG~GNTm 17 (124)
T PF07101_consen 6 NIDIGCGAGNTM 17 (124)
T ss_pred ccccccCCCcch
Confidence 579999999743
No 377
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=36.30 E-value=49 Score=31.34 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCcccHHHHHhc---cceEEEeccCCCCc
Q 022592 140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSNDPS 174 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~---~~v~gvD~s~~~~~ 174 (294)
.++.+||-|.+|-...+..+. .+|++||+++.+..
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~a 71 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNA 71 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHH
Confidence 377899999877666555554 59999999995443
No 378
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=36.24 E-value=1.2e+02 Score=27.36 Aligned_cols=82 Identities=13% Similarity=0.211 Sum_probs=46.4
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCCcE-------EEccCCCCC--------CCCCCccEEEEcccc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLSL 199 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~~~-------~~~d~~~lp--------~~~~~fD~Vi~~~~l 199 (294)
.++..||-.|+|. |..+..++ ..|+++..++.+..+ ...+..... .+...+|+|+.+..
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g- 236 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG- 236 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC-
Confidence 4667888888763 44444444 366666544421111 001111110 12345899887532
Q ss_pred cCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 200 MGINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 200 ~~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
-...+.++.+.|+++|.++....
T Consensus 237 ----~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 237 ----NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEEcC
Confidence 14567889999999999887643
No 379
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.04 E-value=21 Score=35.45 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred hhHHHhhhcccCCCCCCchhh-hhhhhhhhhhhhccccccccc
Q 022592 6 SRKRKRRRRHNSNSKPQDQES-YQSKSTAKTTAKKHKQDTVKN 47 (294)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~ 47 (294)
++|++|||+.+.+.+.+++|+ ..++.++--...|.|-|.+..
T Consensus 92 ~KKK~krkkKk~~~~~d~~e~s~deq~~a~l~~~k~K~d~~~e 134 (665)
T KOG2422|consen 92 KKKKKKRKKKKSTAEVDKDEGSDDEQKLAILKYGKTKNDDKNE 134 (665)
T ss_pred cchhhhhccccccCccccccCCchHHHHHHHHhhccchhhhhc
Confidence 344444444455554444444 444666555555556555543
No 380
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=35.39 E-value=1.1e+02 Score=27.11 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=45.7
Q ss_pred CCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCCCc--------EEEccCCCCC-----C-CCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPS--------VIACDMSNTP-----L-NSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~~~--------~~~~d~~~lp-----~-~~~~fD~Vi~~~~l~ 200 (294)
++.+||=+|+|. |.++..++ . .|+++|.++.+.. .+. +..... . ....+|+|+-+..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~d~vid~~G-- 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALA-EPEVLAERQGGLQNGRGVDVALEFSG-- 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEec-CchhhHHHHHHHhCCCCCCEEEECCC--
Confidence 567888888753 22333333 2 3888887763211 111 111100 0 1234888775432
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
-...+..+.++|+|+|.+++...
T Consensus 197 ---~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ---ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ---ChHHHHHHHHHhcCCCEEEEecc
Confidence 24578888999999999998753
No 381
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=34.82 E-value=1.7e+02 Score=26.93 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=46.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCCCc---------EEEccCCCC-----CCCCCCccEEEEcccc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPS---------VIACDMSNT-----PLNSSSVDVAVFCLSL 199 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~~~---------~~~~d~~~l-----p~~~~~fD~Vi~~~~l 199 (294)
.++.+||=+|+|. |.++..++ . .|+++|.++.+.. ++...-.++ ....+.+|+|+-+..
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G- 268 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG- 268 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC-
Confidence 3566788788753 23333333 2 5888887763221 111110110 011225888875432
Q ss_pred cCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 200 MGINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 200 ~~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
-...+..+.++|+++|.++++..
T Consensus 269 ----~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 ----SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ----ChHHHHHHHHHHhcCCEEEEEcc
Confidence 14577888899999999988653
No 382
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=34.33 E-value=1.1e+02 Score=28.05 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=27.7
Q ss_pred CccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 189 ~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
.||+|+.-..=+-...+.-|.++.+.+.|||.++++.
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g 73 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVG 73 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEe
Confidence 6899886433222345677889999999999999974
No 383
>PHA02119 hypothetical protein
Probab=34.05 E-value=26 Score=24.51 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=41.1
Q ss_pred HHHHHHHhcCcCcEEEEEeecC------CCC-CCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEEE
Q 022592 207 YLQEAQRVLKPSGWLLIAEVKS------RFD-PNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMFY 267 (294)
Q Consensus 207 ~l~el~r~LkpgG~l~i~e~~~------~~~-~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i~ 267 (294)
+-.|+.|-|.|-|.++.-++-+ .|. ...+++-..++...|+..||++..-.+.+..+.+..
T Consensus 17 ateelkrklapvgkfvademi~~r~f~isf~~~kfp~i~~~divdylr~lgy~~~~~s~rnes~i~vt 84 (87)
T PHA02119 17 ATEELKRKLAPVGKFVADEMIRQRSFKISFDVAKFPAIMPKDIVDYLRSLGYDAKSDSFRNESVITVT 84 (87)
T ss_pred HHHHHHHhccchhhHHHHHHHHhheeEEEeccccCCccccHHHHHHHHHccchhccccccCceEEEEe
Confidence 4568999999999887643211 111 122334557888899999999877667776665543
No 384
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=33.63 E-value=61 Score=29.67 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCcCcEEEEEee
Q 022592 205 PNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~e~ 226 (294)
...+..+.++|++||.++++..
T Consensus 252 ~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 252 KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred hHHHHHHHHHHhcCCeEEEECc
Confidence 4577778899999999998754
No 385
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=33.21 E-value=2.3e+02 Score=27.72 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCcCcEEEEE
Q 022592 205 PNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~ 224 (294)
..++..+..+|++||...++
T Consensus 335 ~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 335 LAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred HHHHHHHHHhcCCCCeEEEE
Confidence 36788888999999986665
No 386
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=32.80 E-value=68 Score=20.82 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=13.8
Q ss_pred HHHHHHHHHCCCeEEEE
Q 022592 240 NKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 240 ~~~~~~l~~~Gf~~~~~ 256 (294)
.++..+|+.+||.....
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 57899999999998865
No 387
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=32.53 E-value=2.2e+02 Score=27.94 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=45.2
Q ss_pred CCCCEEEEEcCcccHHHHHhc-------cceEEEeccCCCCc------EEEccCCCCCCCCCCccEEEEcccccCCCHHH
Q 022592 140 SPSLVIADFGCGDARLAKSVK-------NKVFSFDLVSNDPS------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPN 206 (294)
Q Consensus 140 ~~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~~~~~------~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~ 206 (294)
..+.+|+=+|+|. .+..++ .+|+.+|.++.... +...++..+ -...|+|+.... ...
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leel---l~~ADIVI~atG-----t~~ 321 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDV---VETADIFVTATG-----NKD 321 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHH---HhcCCEEEECCC-----ccc
Confidence 3677899999986 333222 37888877653220 111122111 135899987632 123
Q ss_pred HH-HHHHHhcCcCcEEEEEe
Q 022592 207 YL-QEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 207 ~l-~el~r~LkpgG~l~i~e 225 (294)
++ .+....+|||++|+-+.
T Consensus 322 iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred ccCHHHHhccCCCcEEEEcC
Confidence 44 47888899999988863
No 388
>PLN00016 RNA-binding protein; Provisional
Probab=32.26 E-value=2.4e+02 Score=26.10 Aligned_cols=55 Identities=13% Similarity=0.031 Sum_probs=34.2
Q ss_pred CEEEEE---cCcccHHHHHhc-------cceEEEeccCC-------------------CCcEEEccCCCCC--CCCCCcc
Q 022592 143 LVIADF---GCGDARLAKSVK-------NKVFSFDLVSN-------------------DPSVIACDMSNTP--LNSSSVD 191 (294)
Q Consensus 143 ~~VLDi---GcG~G~~~~~l~-------~~v~gvD~s~~-------------------~~~~~~~d~~~lp--~~~~~fD 191 (294)
.+||=+ |.|+|.++..+. ..|++++.+.. .+.++.+|+.++. +....+|
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~~d 132 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAGFD 132 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCCcc
Confidence 468877 346776665553 27888776542 3667778876521 2234689
Q ss_pred EEEEcc
Q 022592 192 VAVFCL 197 (294)
Q Consensus 192 ~Vi~~~ 197 (294)
+|+...
T Consensus 133 ~Vi~~~ 138 (378)
T PLN00016 133 VVYDNN 138 (378)
T ss_pred EEEeCC
Confidence 988654
No 389
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=32.24 E-value=1.8e+02 Score=26.47 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=36.0
Q ss_pred CEEEEEcCcccHHHHHhcc---------ceEEEeccCCCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHH
Q 022592 143 LVIADFGCGDARLAKSVKN---------KVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQR 213 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~~---------~v~gvD~s~~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r 213 (294)
..|+=+|++.|.....|.. +.+.+|+.+... .+..++ .+.++--.. -.+.+.++..
T Consensus 60 ~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~-----~l~~l~----~v~l~~~ff------tee~~~~~~~ 124 (294)
T PF01358_consen 60 VTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCI-----SLEELS----NVTLIQRFF------TEEYARRLRD 124 (294)
T ss_dssp EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---G-----GGTT-T----TEEEEES---------HHHHHHHHH
T ss_pred eEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhh-----hhcccC----cEEeehhhC------CHHHHHHHHh
Confidence 4799999999998888862 256677655322 112221 112211111 1556677777
Q ss_pred hcCcCcEEEEEeecCCCC
Q 022592 214 VLKPSGWLLIAEVKSRFD 231 (294)
Q Consensus 214 ~LkpgG~l~i~e~~~~~~ 231 (294)
.+.+ .+|+|+|+.+.-.
T Consensus 125 ~~~~-~illISDIRS~~~ 141 (294)
T PF01358_consen 125 KLNL-KILLISDIRSGDP 141 (294)
T ss_dssp HHTT-EEEEEE-------
T ss_pred hcCC-CeEEEEecccCCC
Confidence 7776 8999999876543
No 390
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=32.16 E-value=1.2e+02 Score=27.49 Aligned_cols=80 Identities=6% Similarity=-0.012 Sum_probs=46.2
Q ss_pred CCCCEEEEEcC--cccHHHHHhc----cceEEEeccCCCCc----------EEE-ccCCCC-----CCCCCCccEEEEcc
Q 022592 140 SPSLVIADFGC--GDARLAKSVK----NKVFSFDLVSNDPS----------VIA-CDMSNT-----PLNSSSVDVAVFCL 197 (294)
Q Consensus 140 ~~~~~VLDiGc--G~G~~~~~l~----~~v~gvD~s~~~~~----------~~~-~d~~~l-----p~~~~~fD~Vi~~~ 197 (294)
.++.+||=.|+ |-|.++..++ ..|++++.++.+.. ++. .+-.++ ......+|+|+-+.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~ 229 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNV 229 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence 46778988886 3445554444 36777765542211 111 000010 01124588887643
Q ss_pred cccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 198 SLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
. ...+..+.++|+++|.++.+.
T Consensus 230 g------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 230 G------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred C------HHHHHHHHHHhccCcEEEEec
Confidence 3 356788999999999998764
No 391
>PRK13243 glyoxylate reductase; Reviewed
Probab=31.96 E-value=43 Score=31.01 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=54.2
Q ss_pred CCCEEEEEcCcc-cH-HHHHhc---cceEEEeccCCCCcEEEccC--CCCCCCCCCccEEEEcccccCCCHHHHHHHHHH
Q 022592 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPSVIACDM--SNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQR 213 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~-~~~~l~---~~v~gvD~s~~~~~~~~~d~--~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r 213 (294)
.+.+|.=||+|. |. ++..+. .+|+++|.+..........+ .++..--...|+|+.+..+......-+-.+...
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~ 228 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLK 228 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHh
Confidence 567899999975 43 333333 37899998753221100001 111100135799888766543222222346777
Q ss_pred hcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592 214 VLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD 248 (294)
Q Consensus 214 ~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~ 248 (294)
.++||.+|+-+.-. .-.+.+.+.+.|++
T Consensus 229 ~mk~ga~lIN~aRg-------~~vd~~aL~~aL~~ 256 (333)
T PRK13243 229 LMKPTAILVNTARG-------KVVDTKALVKALKE 256 (333)
T ss_pred cCCCCeEEEECcCc-------hhcCHHHHHHHHHc
Confidence 78998776664211 11355667777765
No 392
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=31.64 E-value=95 Score=24.31 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHCCCeEEEEecc
Q 022592 237 ADPNKFSKAVCDLGFAPVSKDFS 259 (294)
Q Consensus 237 ~~~~~~~~~l~~~Gf~~~~~~~~ 259 (294)
|+++++..+++++||.++.....
T Consensus 96 y~~~~~~~l~~~aGl~~~~~w~d 118 (127)
T PF10017_consen 96 YSPEEFEALAEQAGLEVEKRWTD 118 (127)
T ss_pred cCHHHHHHHHHHCCCeeEEEEEC
Confidence 68899999999999999885443
No 393
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=31.00 E-value=78 Score=29.02 Aligned_cols=102 Identities=14% Similarity=0.021 Sum_probs=55.5
Q ss_pred CCCEEEEEcCcc-cH-HHHHhc---cceEEEeccCCCCc-EEEc-cCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHH
Q 022592 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPS-VIAC-DMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQR 213 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~-~~~~l~---~~v~gvD~s~~~~~-~~~~-d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r 213 (294)
.+.+|.=||.|. |. .+..+. -.|+++|.+..... +... ...++.---...|+|+....+--....-+-.+...
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~ 214 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLE 214 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHh
Confidence 456888888885 43 333333 37889997664321 1111 11111101134799887765543222233356788
Q ss_pred hcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592 214 VLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL 249 (294)
Q Consensus 214 ~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~ 249 (294)
.++||..|+-+.- ..-.+.+.+.++|+.-
T Consensus 215 ~mk~ga~lIN~aR-------G~vVde~aL~~aL~~g 243 (312)
T PRK15469 215 QLPDGAYLLNLAR-------GVHVVEDDLLAALDSG 243 (312)
T ss_pred cCCCCcEEEECCC-------ccccCHHHHHHHHhcC
Confidence 8999886665421 1113557777777764
No 394
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=30.96 E-value=3.5e+02 Score=24.30 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=44.3
Q ss_pred CEEEEEcC--cccHHHHHhc----c-ceEEEeccCCCCc----------EEEccCCCCC-----CCCCCccEEEEccccc
Q 022592 143 LVIADFGC--GDARLAKSVK----N-KVFSFDLVSNDPS----------VIACDMSNTP-----LNSSSVDVAVFCLSLM 200 (294)
Q Consensus 143 ~~VLDiGc--G~G~~~~~l~----~-~v~gvD~s~~~~~----------~~~~d~~~lp-----~~~~~fD~Vi~~~~l~ 200 (294)
.+||=.|+ |.|..+..++ . +|++++.++.+.. ++...-.++. .....+|+|+-+..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g-- 233 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG-- 233 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC--
Confidence 68888886 3555555444 3 5888876653211 1111101110 11245898886433
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
...+.++.++|+++|.++.+.
T Consensus 234 ----~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 234 ----GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred ----cHHHHHHHHHhccCCEEEEEe
Confidence 234678899999999998764
No 395
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=30.77 E-value=1.1e+02 Score=29.00 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=53.2
Q ss_pred HHHHhhccCCCCEEEEEcCcccHHHHHhcc-ceEEE-eccC-----------C-----CCcEEEccCCCCCCCCCCccEE
Q 022592 132 IVKWLKDHSPSLVIADFGCGDARLAKSVKN-KVFSF-DLVS-----------N-----DPSVIACDMSNTPLNSSSVDVA 193 (294)
Q Consensus 132 ~~~~l~~~~~~~~VLDiGcG~G~~~~~l~~-~v~gv-D~s~-----------~-----~~~~~~~d~~~lp~~~~~fD~V 193 (294)
+++.+........||=|+-..|.++..++. .++.+ |--- . .+.++ +... +++ +.+|+|
T Consensus 35 ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~-~~~-~~~d~v 110 (378)
T PRK15001 35 LLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFL--DSTA-DYP-QQPGVV 110 (378)
T ss_pred HHHHHhhcccCCCEEEEcCchhHHHHHHHhCCCCeeehHHHHHHHHHHHHHHcCCCcccceee--cccc-ccc-CCCCEE
Confidence 455554432223799999999999998873 33322 2110 1 12222 1111 223 348998
Q ss_pred EEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592 194 VFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK 227 (294)
Q Consensus 194 i~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~ 227 (294)
+....=.-......+..+.++|.||+.+++.+-.
T Consensus 111 l~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 111 LIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred EEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 8653322123456788899999999998877544
No 396
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=29.75 E-value=26 Score=32.10 Aligned_cols=81 Identities=23% Similarity=0.191 Sum_probs=48.1
Q ss_pred CCCEEEEEcCcccHHHH-Hhc----cceEEEeccCC----------------CCcEEEccCCCCCCCCCCccEEEEcccc
Q 022592 141 PSLVIADFGCGDARLAK-SVK----NKVFSFDLVSN----------------DPSVIACDMSNTPLNSSSVDVAVFCLSL 199 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~-~l~----~~v~gvD~s~~----------------~~~~~~~d~~~lp~~~~~fD~Vi~~~~l 199 (294)
.+..|+|+=+|-|+|+. .+. ..|+++|+++. +...+.+|-.. +-+....|-|.....-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnLGLlP 272 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNLGLLP 272 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheeecccc
Confidence 45689999999999887 332 58999999982 11233444433 3345667777654321
Q ss_pred cCCCHHHHHHHHHHhcCc-Cc-EEEEEe
Q 022592 200 MGINFPNYLQEAQRVLKP-SG-WLLIAE 225 (294)
Q Consensus 200 ~~~~~~~~l~el~r~Lkp-gG-~l~i~e 225 (294)
+-.+-...+..+|+| || ++-|-+
T Consensus 273 ---Sse~~W~~A~k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 273 ---SSEQGWPTAIKALKPEGGSILHIHE 297 (351)
T ss_pred ---ccccchHHHHHHhhhcCCcEEEEec
Confidence 222333344556777 45 555544
No 397
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=29.26 E-value=1.8e+02 Score=26.28 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCCEEEEEcCcc-cHHHHHhc----cc-eEEEeccCCCC--------cEEEccCCC-----C-CC-CCCCccEEEEcccc
Q 022592 141 PSLVIADFGCGD-ARLAKSVK----NK-VFSFDLVSNDP--------SVIACDMSN-----T-PL-NSSSVDVAVFCLSL 199 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~----~~-v~gvD~s~~~~--------~~~~~d~~~-----l-p~-~~~~fD~Vi~~~~l 199 (294)
++.+||=+|+|. |.++..++ .. |+++|.++.+. ..+. +... + .. ....+|+|+-+..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i-~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVI-NSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-cCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 567888888752 22233332 25 88888765321 1111 1111 0 01 1235898885432
Q ss_pred cCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 200 MGINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 200 ~~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
....+..+.+.|+++|.+++...
T Consensus 241 ----~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 ----NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ----CHHHHHHHHHHhhcCCEEEEEcC
Confidence 13456778899999999988643
No 398
>PLN02827 Alcohol dehydrogenase-like
Probab=29.05 E-value=1.3e+02 Score=28.04 Aligned_cols=81 Identities=14% Similarity=0.215 Sum_probs=44.8
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc-----cceEEEeccCCCC--------cEEEccCCCC--C-------CCCCCccEEEEc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDP--------SVIACDMSNT--P-------LNSSSVDVAVFC 196 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~-----~~v~gvD~s~~~~--------~~~~~d~~~l--p-------~~~~~fD~Vi~~ 196 (294)
.++.+||=+|+|. |.++..++ ..|+++|.++.+. ..+. +.... + +..+.+|+|+-+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i-~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFI-NPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE-cccccchHHHHHHHHHhCCCCCEEEEC
Confidence 4677898888753 22333333 2477888665221 1111 11110 0 111258888754
Q ss_pred ccccCCCHHHHHHHHHHhcCcC-cEEEEEee
Q 022592 197 LSLMGINFPNYLQEAQRVLKPS-GWLLIAEV 226 (294)
Q Consensus 197 ~~l~~~~~~~~l~el~r~Lkpg-G~l~i~e~ 226 (294)
.. -...+....++|++| |.++++..
T Consensus 271 ~G-----~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 271 VG-----DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CC-----ChHHHHHHHHhhccCCCEEEEECC
Confidence 33 134677888999998 99987643
No 399
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=29.00 E-value=20 Score=29.75 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=55.5
Q ss_pred CCCEEEEEcCcccHHHHHhc-------cceEEEeccCCCC------cEEEccCCCCCCCCCCccEEEEcccccCCCHHHH
Q 022592 141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVSNDP------SVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY 207 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~~~~------~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~ 207 (294)
.+.+|.=||+|. .+..++ .+|+++|.+.... .+...++.++ -...|+|+....+......-+
T Consensus 35 ~g~tvgIiG~G~--IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~el---l~~aDiv~~~~plt~~T~~li 109 (178)
T PF02826_consen 35 RGKTVGIIGYGR--IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDEL---LAQADIVSLHLPLTPETRGLI 109 (178)
T ss_dssp TTSEEEEESTSH--HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHH---HHH-SEEEE-SSSSTTTTTSB
T ss_pred CCCEEEEEEEcC--CcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhh---cchhhhhhhhhccccccceee
Confidence 567899998864 333333 4899999887422 2223333222 135799998777654333333
Q ss_pred HHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCC
Q 022592 208 LQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLG 250 (294)
Q Consensus 208 l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~G 250 (294)
=.+....+|+|.+|+-+--. .-.+.+.+.++|++--
T Consensus 110 ~~~~l~~mk~ga~lvN~aRG-------~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 110 NAEFLAKMKPGAVLVNVARG-------ELVDEDALLDALESGK 145 (178)
T ss_dssp SHHHHHTSTTTEEEEESSSG-------GGB-HHHHHHHHHTTS
T ss_pred eeeeeeccccceEEEeccch-------hhhhhhHHHHHHhhcc
Confidence 34566788988766653211 1136678888887743
No 400
>PRK06487 glycerate dehydrogenase; Provisional
Probab=28.81 E-value=59 Score=29.82 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=54.2
Q ss_pred CCCEEEEEcCcc-cH-HHHHhc---cceEEEeccCCCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhc
Q 022592 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVL 215 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~-~~~~l~---~~v~gvD~s~~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~L 215 (294)
.+.+|.=||+|. |. .+..+. -+|+++|.+.........++.++ -...|+|+....+......-+=.+....+
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~el---l~~sDiv~l~lPlt~~T~~li~~~~~~~m 223 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDEL---LPQVDALTLHCPLTEHTRHLIGARELALM 223 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHH---HHhCCEEEECCCCChHHhcCcCHHHHhcC
Confidence 567899999875 43 233332 37888886532111111111111 13469988877665433333444566778
Q ss_pred CcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592 216 KPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD 248 (294)
Q Consensus 216 kpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~ 248 (294)
|||.+|+=+.- ..-.+.+.+.++|+.
T Consensus 224 k~ga~lIN~aR-------G~vVde~AL~~AL~~ 249 (317)
T PRK06487 224 KPGALLINTAR-------GGLVDEQALADALRS 249 (317)
T ss_pred CCCeEEEECCC-------ccccCHHHHHHHHHc
Confidence 99877766421 111356777777776
No 401
>PLN02740 Alcohol dehydrogenase-like
Probab=28.66 E-value=2e+02 Score=26.65 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=46.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCCCc---------EEEccCCC--C-----CCCCCCccEEEEcc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPS---------VIACDMSN--T-----PLNSSSVDVAVFCL 197 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~~~---------~~~~d~~~--l-----p~~~~~fD~Vi~~~ 197 (294)
.++.+||=+|||. |.++..++ . .|+++|.++.+.+ ++...-.+ + .+..+.+|+|+-+.
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 4677899898753 22333333 2 5888988763221 12111000 0 01122588887643
Q ss_pred cccCCCHHHHHHHHHHhcCcC-cEEEEEee
Q 022592 198 SLMGINFPNYLQEAQRVLKPS-GWLLIAEV 226 (294)
Q Consensus 198 ~l~~~~~~~~l~el~r~Lkpg-G~l~i~e~ 226 (294)
. -...+......+++| |.++++..
T Consensus 277 G-----~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 277 G-----NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred C-----ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 3 235777888899997 98887653
No 402
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=28.08 E-value=1.9e+02 Score=19.44 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=28.2
Q ss_pred hcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEeccCCeEEEE
Q 022592 214 VLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDFSNKMFIMF 266 (294)
Q Consensus 214 ~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~f~~i 266 (294)
-+.+|+.|.+.. .. ..+..++..++++.||++..... ...|.++
T Consensus 21 ~~~~g~~l~v~~-d~-------~~s~~~i~~~~~~~G~~~~~~~~-~~~~~i~ 64 (67)
T cd03421 21 ELEAGGEIEVLV-DN-------EVAKENVSRFAESRGYEVSVEEK-GGEFEIT 64 (67)
T ss_pred hcCCCCEEEEEE-cC-------hhHHHHHHHHHHHcCCEEEEEec-CCEEEEE
Confidence 478888876642 11 12457899999999999944433 3344443
No 403
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=27.97 E-value=62 Score=29.62 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=56.7
Q ss_pred CCCEEEEEcCcc-cH-HHHHhc---cceEEEeccCCCC--cEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHH
Q 022592 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDP--SVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQR 213 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~-~~~~l~---~~v~gvD~s~~~~--~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r 213 (294)
.+.+|.=||.|. |. .+..+. .+|.++|.+.... .+...++.++ -...|+|+....+.-....-+=.+...
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~el---l~~sDvv~lh~Plt~~T~~li~~~~~~ 220 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEEL---LKTSDIISIHAPLNEKTKNLIAYKELK 220 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHH---hhcCCEEEEeCCCCchhhcccCHHHHH
Confidence 567899998874 43 233232 3899999864221 1111122221 134699887666543333334456677
Q ss_pred hcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592 214 VLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL 249 (294)
Q Consensus 214 ~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~ 249 (294)
.+|||.+|+=+--. .-.+.+.+.++|+.-
T Consensus 221 ~Mk~~a~lIN~aRG-------~vVDe~AL~~AL~~g 249 (311)
T PRK08410 221 LLKDGAILINVGRG-------GIVNEKDLAKALDEK 249 (311)
T ss_pred hCCCCeEEEECCCc-------cccCHHHHHHHHHcC
Confidence 88999877764211 113667888888764
No 404
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=27.83 E-value=85 Score=29.00 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=56.9
Q ss_pred CCCEEEEEcCcc-cH-HHHHhc---cceEEEeccCCCCc-EEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHh
Q 022592 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPS-VIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRV 214 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~-~~~~l~---~~v~gvD~s~~~~~-~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~ 214 (294)
.+.+|.=||+|. |. ++..+. ..|+++|.++.... +.. -..++...-...|+|+.+..+.......+..++...
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~-~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~ 223 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT-YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDH 223 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhh-ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhc
Confidence 566899999986 32 333333 38999998764211 110 001111112357988876655432234456678888
Q ss_pred cCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC
Q 022592 215 LKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL 249 (294)
Q Consensus 215 LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~ 249 (294)
+++|..|+-+.-. .-.+.+.+.++|++-
T Consensus 224 mk~gavlIN~aRG-------~~vd~~aL~~aL~~g 251 (330)
T PRK12480 224 VKKGAILVNAARG-------AVINTPDLIAAVNDG 251 (330)
T ss_pred CCCCcEEEEcCCc-------cccCHHHHHHHHHcC
Confidence 9998766654211 113567788888753
No 405
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=27.52 E-value=2.6e+02 Score=23.09 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=38.2
Q ss_pred HHHHhhccCCCC-EEEEEcCcccHHHHHhcc-----ceEEEeccC-----------------CCCcEEEccCCCCC----
Q 022592 132 IVKWLKDHSPSL-VIADFGCGDARLAKSVKN-----KVFSFDLVS-----------------NDPSVIACDMSNTP---- 184 (294)
Q Consensus 132 ~~~~l~~~~~~~-~VLDiGcG~G~~~~~l~~-----~v~gvD~s~-----------------~~~~~~~~d~~~lp---- 184 (294)
+.+++... ++. .|+-+|||-=.....+.. .++-+|+.. .+.+++.+|+.+..
T Consensus 69 v~~~i~~~-~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~ 147 (183)
T PF04072_consen 69 VREFIAKH-PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDA 147 (183)
T ss_dssp HHHHHHHH-TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHH
T ss_pred HHHhhccC-CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHH
Confidence 44455443 344 899999997766555542 344555543 13567888877521
Q ss_pred -----CCCCCccEEEEcccccCCCHHHH
Q 022592 185 -----LNSSSVDVAVFCLSLMGINFPNY 207 (294)
Q Consensus 185 -----~~~~~fD~Vi~~~~l~~~~~~~~ 207 (294)
+.....-++++-.++++.++..+
T Consensus 148 L~~~g~~~~~ptl~i~Egvl~Yl~~~~~ 175 (183)
T PF04072_consen 148 LPKAGFDPDRPTLFIAEGVLMYLSPEQV 175 (183)
T ss_dssp HHHCTT-TTSEEEEEEESSGGGS-HHHH
T ss_pred HHHhCCCCCCCeEEEEcchhhcCCHHHH
Confidence 22334456666666666554433
No 406
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.06 E-value=79 Score=29.84 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.3
Q ss_pred CCCEEEEEcCcccHHHHHhc
Q 022592 141 PSLVIADFGCGDARLAKSVK 160 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~ 160 (294)
++..++++|||-|.++.+++
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs 201 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVS 201 (420)
T ss_pred CcceEEEecCCchHHHHHHH
Confidence 34679999999999999886
No 407
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=27.03 E-value=57 Score=30.69 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=43.3
Q ss_pred CCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCCCc--------EEEccCC---CCCCCCCCccEEEEcccccCC-C
Q 022592 141 PSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPS--------VIACDMS---NTPLNSSSVDVAVFCLSLMGI-N 203 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~~~--------~~~~d~~---~lp~~~~~fD~Vi~~~~l~~~-~ 203 (294)
++.+|+=+|+|. |..+...+ ..|+.+|.+..... .+..+.. .+.-.-..+|+|+.+..+... .
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 345789998873 33333222 37889998753211 1111111 111001358999976433221 2
Q ss_pred HHHHHHHHHHhcCcCcEEEEE
Q 022592 204 FPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~ 224 (294)
+.-+-.++.+.++||+.++-+
T Consensus 246 p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 246 PKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CcCcCHHHHhcCCCCCEEEEE
Confidence 222336666778999877654
No 408
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=27.01 E-value=2.1e+02 Score=25.92 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCcCcEEEEEee
Q 022592 205 PNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~e~ 226 (294)
...+.+..++|++||.++++..
T Consensus 240 ~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 240 PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred HHHHHHHHHHhhcCCEEEEEcc
Confidence 4678889999999999998754
No 409
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=26.89 E-value=3e+02 Score=24.97 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=47.1
Q ss_pred CCCEEEEEcCcccHHHHHhcc---------ceEEEeccCCCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHH
Q 022592 141 PSLVIADFGCGDARLAKSVKN---------KVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEA 211 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~~---------~v~gvD~s~~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el 211 (294)
.+..|+-+|+|.|.....|.. +-+.+|+.+.... ++.++ ++.+... .++ ...++.+
T Consensus 60 ~g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~~~-----Le~l~------nV~Li~~---f~d-e~~i~~~ 124 (300)
T PHA03108 60 DGSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHDPI-----LNGLR------DVTLVTR---FVD-EAYLRRL 124 (300)
T ss_pred CCceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcccHh-----hcCCC------cEEeeHh---hcC-HHHHHHH
Confidence 356999999999998887752 2344554443211 11111 2222211 122 3488889
Q ss_pred HHhcCcCcEEEEEeecCCC
Q 022592 212 QRVLKPSGWLLIAEVKSRF 230 (294)
Q Consensus 212 ~r~LkpgG~l~i~e~~~~~ 230 (294)
...+.+.-+++|+|+.+.-
T Consensus 125 r~~~~~~~illISDIRS~~ 143 (300)
T PHA03108 125 KKQLHPSKIILISDIRSKR 143 (300)
T ss_pred HHhccCCCEEEEEeecccC
Confidence 9999999999999998754
No 410
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=26.87 E-value=3.9e+02 Score=23.97 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=45.3
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----cc-eEEEeccCCCC---------cEEEccCCC----CC-CCCCCccEEEEcccc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----NK-VFSFDLVSNDP---------SVIACDMSN----TP-LNSSSVDVAVFCLSL 199 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~~-v~gvD~s~~~~---------~~~~~d~~~----lp-~~~~~fD~Vi~~~~l 199 (294)
.++..||-.|+|. |..+..++ .. +++++.++... .++...-.. .. .+...+|+|+.+.
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~-- 235 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA-- 235 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECC--
Confidence 3667888888654 44444443 24 77776554211 111111000 00 1123489988652
Q ss_pred cCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 200 MGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 200 ~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
.....+..+.++|+++|.++...
T Consensus 236 ---g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 ---GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ---CCHHHHHHHHHHhhcCCEEEEEc
Confidence 12457788899999999988764
No 411
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=26.75 E-value=2.7e+02 Score=25.51 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=24.6
Q ss_pred CCCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 187 ~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
...+|+|+.+.. -...+.++.++|+++|.++...
T Consensus 254 ~~~~d~vld~vg-----~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 254 GRGVDVVVEALG-----KPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCEEEEeCC-----CHHHHHHHHHHHhcCCEEEEEc
Confidence 345898886532 1236788999999999988764
No 412
>PRK06242 flavodoxin; Provisional
Probab=26.59 E-value=2.3e+02 Score=22.18 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=34.5
Q ss_pred CCccEEEEcccccCCC----HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 188 SSVDVAVFCLSLMGIN----FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~----~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
..+|+|+.....++.. ...++.++.. + .|-.+++......... .....+.+.++..||.++.
T Consensus 42 ~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~-~-~~k~~~~f~t~g~~~~----~~~~~l~~~l~~~g~~~~~ 107 (150)
T PRK06242 42 SEYDLIGFGSGIYFGKFHKSLLKLIEKLPP-V-SGKKAFIFSTSGLPFL----KYHKALKKKLKEKGFEIVG 107 (150)
T ss_pred hHCCEEEEeCchhcCCcCHHHHHHHHhhhh-h-cCCeEEEEECCCCCcc----hHHHHHHHHHHHCCCEEEE
Confidence 4589988877666532 2344444432 1 2333333322221111 1257888999999999876
No 413
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=26.54 E-value=1.7e+02 Score=32.33 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=37.2
Q ss_pred CCcEEEccCCCCCCCC-----CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeecCCC
Q 022592 172 DPSVIACDMSNTPLNS-----SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVKSRF 230 (294)
Q Consensus 172 ~~~~~~~d~~~lp~~~-----~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~ 230 (294)
.+.+.+-|+...+.+. .+.|++++ |+.+++..+...|+.+|.|++.+..+.+
T Consensus 1209 gi~~t~~dl~~~~~E~~~h~v~~~d~l~~-------d~~~~le~~~~slre~GFLll~e~~~~~ 1265 (2376)
T KOG1202|consen 1209 GIRYTAKDLEAAQVEQQCHFVAQADLLVC-------DPAKALENCVASLREGGFLLLEELLSTY 1265 (2376)
T ss_pred CcEEEEeccchhHHHHhhhhhhccCeEec-------ChHHHHHHHHHHHhcCCeEEEEhhccCC
Confidence 4556666765544321 23555554 7889999999999999999998877644
No 414
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=26.47 E-value=3.5e+02 Score=26.02 Aligned_cols=61 Identities=15% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCCEEEEEcCc-ccHHH-HHhc----cceEEEeccCCC-------CcEEEccCCCCCCCCCCccEEEEcccccC
Q 022592 141 PSLVIADFGCG-DARLA-KSVK----NKVFSFDLVSND-------PSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (294)
Q Consensus 141 ~~~~VLDiGcG-~G~~~-~~l~----~~v~gvD~s~~~-------~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~ 201 (294)
.+.+||=||.| .|.+. .+|. ..++.+.-...+ +......+.+++-.-..+|+|+++.+-.|
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 56689999999 56543 3443 244444433311 11222222333322356999999877666
No 415
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=25.99 E-value=2.2e+02 Score=19.40 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=37.4
Q ss_pred cCCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHC-CC-eEEEEeccCCeEEEE
Q 022592 200 MGINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDL-GF-APVSKDFSNKMFIMF 266 (294)
Q Consensus 200 ~~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~-Gf-~~~~~~~~~~~f~~i 266 (294)
.+..+...+-+....|.||..|.++. . ..+.-+...|+.. || .-.........|.+.
T Consensus 8 ~~~~p~~~il~~~~~L~~Ge~l~lv~---d-------~~P~pL~~~l~~~~g~~~~~~~~~~~~~w~v~ 66 (69)
T PF10006_consen 8 PPPEPHERILEALDELPPGETLELVN---D-------HDPRPLYPQLEERRGFFSWEYEEQGPGEWRVR 66 (69)
T ss_pred CCcChHHHHHHHHHcCCCCCEEEEEe---C-------CCCHHHHHHHHHhCCCceEEEEEcCCCEEEEE
Confidence 34466777788888899999888763 1 2335666777777 98 555555555555444
No 416
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.02 E-value=5.3e+02 Score=23.45 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=71.7
Q ss_pred CEEEEEcCcccHHHHHhc----cceEEEeccC-----------------CCCcEEEccCCCCC----CC-----CCCccE
Q 022592 143 LVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTP----LN-----SSSVDV 192 (294)
Q Consensus 143 ~~VLDiGcG~G~~~~~l~----~~v~gvD~s~-----------------~~~~~~~~d~~~lp----~~-----~~~fD~ 192 (294)
..|+-+|||-=.-+..+. -.|+-+|.-+ ...+++..|+..-. +. ...--+
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~ 173 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTL 173 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCeE
Confidence 479999998543333332 1556666554 25678888998422 22 333457
Q ss_pred EEEcccccCCCH---HHHHHHHHHhcCcCcEEEEEee-cCCC---------------------CCCCCCCCHHHHHHHHH
Q 022592 193 AVFCLSLMGINF---PNYLQEAQRVLKPSGWLLIAEV-KSRF---------------------DPNTGGADPNKFSKAVC 247 (294)
Q Consensus 193 Vi~~~~l~~~~~---~~~l~el~r~LkpgG~l~i~e~-~~~~---------------------~~~~~~~~~~~~~~~l~ 247 (294)
+++-+++++..+ ..++..|...+.||-.++.... .... .......+..++..++.
T Consensus 174 ~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~l~ 253 (297)
T COG3315 174 WIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIETWLA 253 (297)
T ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHHHHH
Confidence 778888888654 4778888888888777666531 1100 01111146789999999
Q ss_pred HCCCeEEEE
Q 022592 248 DLGFAPVSK 256 (294)
Q Consensus 248 ~~Gf~~~~~ 256 (294)
+.||..+..
T Consensus 254 ~~g~~~~~~ 262 (297)
T COG3315 254 ERGWRSTLN 262 (297)
T ss_pred hcCEEEEec
Confidence 999988774
No 417
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=24.80 E-value=2.3e+02 Score=25.70 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=42.0
Q ss_pred CCCEEEEEcCcccHH-H-HHhc---cceEEEeccCCCC------cEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHH
Q 022592 141 PSLVIADFGCGDARL-A-KSVK---NKVFSFDLVSNDP------SVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQ 209 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~-~-~~l~---~~v~gvD~s~~~~------~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~ 209 (294)
.+.+|+=||+|.-.. + ..+. ..|+.+|.++... .+...+..+++..-..+|+|+..-. ..-.-+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p-----~~~i~~ 225 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIP-----ALVLTK 225 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCC-----hhhhhH
Confidence 467999999875221 1 1111 3788888876311 1111111122111246899997532 122345
Q ss_pred HHHHhcCcCcEEEE
Q 022592 210 EAQRVLKPSGWLLI 223 (294)
Q Consensus 210 el~r~LkpgG~l~i 223 (294)
++...++||+.++-
T Consensus 226 ~~l~~~~~g~vIID 239 (296)
T PRK08306 226 EVLSKMPPEALIID 239 (296)
T ss_pred HHHHcCCCCcEEEE
Confidence 67778899876554
No 418
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=24.68 E-value=4.5e+02 Score=23.75 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=25.0
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
..+|+|+-+.. ....+.++.++|+++|.++....
T Consensus 234 ~~~d~vld~~g-----~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 234 KGVDAVIIAGG-----GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCCcEEEECCC-----CHHHHHHHHHHhhcCCEEEEecc
Confidence 35898885432 13578899999999999987643
No 419
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=24.07 E-value=1.5e+02 Score=20.16 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCcCcEEEEE
Q 022592 205 PNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~ 224 (294)
..-++++.+.+..||.++++
T Consensus 50 ~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 50 PEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred hHHHHHHHHHHHcCCEEEEe
Confidence 46677888999999999985
No 420
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=24.05 E-value=4.2e+02 Score=23.93 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=23.8
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
..+|+|+.+--. .+...++..+..++.+++.++..
T Consensus 71 ~~~D~vilavK~--~~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 71 PPCDWVLVGLKT--TANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred CCCCEEEEEecC--CChHhHHHHHhhhcCCCCEEEEe
Confidence 468988765322 23456777888888888876653
No 421
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=23.73 E-value=3.6e+02 Score=25.85 Aligned_cols=95 Identities=8% Similarity=-0.002 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCccc-HHHHHhc----cceEEEeccCCCCc------EEEccCCCCCCCCCCccEEEEcccccCCCHHHHH
Q 022592 140 SPSLVIADFGCGDA-RLAKSVK----NKVFSFDLVSNDPS------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL 208 (294)
Q Consensus 140 ~~~~~VLDiGcG~G-~~~~~l~----~~v~gvD~s~~~~~------~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l 208 (294)
..+.+|+=+|+|.= ......+ .+|+++|.++.... +...++.+. + ...|+|+.... ....+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leea-l--~~aDVVItaTG-----~~~vI 264 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEA-A--KIGDIFITATG-----NKDVI 264 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHH-H--hcCCEEEECCC-----CHHHH
Confidence 36779999999863 3222222 47888987763211 111122111 1 34699876432 24445
Q ss_pred H-HHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592 209 Q-EAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD 248 (294)
Q Consensus 209 ~-el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~ 248 (294)
. +....+|+|++++.+.... ..++.+.+.+.+..
T Consensus 265 ~~~~~~~mK~GailiN~G~~~------~eId~~aL~~~~~~ 299 (406)
T TIGR00936 265 RGEHFENMKDGAIVANIGHFD------VEIDVKALEELAVE 299 (406)
T ss_pred HHHHHhcCCCCcEEEEECCCC------ceeCHHHHHHHHhh
Confidence 4 5888999999988864221 12456677665543
No 422
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=23.71 E-value=2.1e+02 Score=26.34 Aligned_cols=81 Identities=25% Similarity=0.350 Sum_probs=45.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHhc----c-ceEEEeccCCCC--------c-EEEccCCCC-----CCCCCCccEEEEcccc
Q 022592 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDP--------S-VIACDMSNT-----PLNSSSVDVAVFCLSL 199 (294)
Q Consensus 140 ~~~~~VLDiGcG~-G~~~~~l~----~-~v~gvD~s~~~~--------~-~~~~d~~~l-----p~~~~~fD~Vi~~~~l 199 (294)
.++..||=.|+|. |..+..++ . .++++|.++.+. . ++..+-.++ ......+|+|+-+..
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g- 263 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTG- 263 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCC-
Confidence 3566788877643 33333333 2 588888765221 1 111111010 011245888886432
Q ss_pred cCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 200 MGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 200 ~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
....+..+.++|+++|.++...
T Consensus 264 ----~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 264 ----VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred ----CcHHHHHHHHHhccCCEEEEeC
Confidence 1346788999999999988764
No 423
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.53 E-value=1.6e+02 Score=27.83 Aligned_cols=80 Identities=16% Similarity=0.049 Sum_probs=50.6
Q ss_pred CCEEEEEcCcccHHHHHhc----c-ceEEEeccCCCCcE---------------EEccCCCCCC-CCCCccEEEEccccc
Q 022592 142 SLVIADFGCGDARLAKSVK----N-KVFSFDLVSNDPSV---------------IACDMSNTPL-NSSSVDVAVFCLSLM 200 (294)
Q Consensus 142 ~~~VLDiGcG~G~~~~~l~----~-~v~gvD~s~~~~~~---------------~~~d~~~lp~-~~~~fD~Vi~~~~l~ 200 (294)
..+|||.=+|+|.=+..++ . +|+.-|+|+..++. +..|+..+-. ....||+|=.. -
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD---P 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID---P 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC---C
Confidence 4589999999998666554 2 68899999843322 2222221111 01334443211 0
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEE
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIA 224 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~ 224 (294)
+-.|..++..+.+.++.||.|.++
T Consensus 130 FGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 130 FGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CCCCchHHHHHHHHhhcCCEEEEE
Confidence 115678999999999999999996
No 424
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=23.47 E-value=2.8e+02 Score=25.39 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=50.4
Q ss_pred cCCCCEEEEEcCccc--HHHHHhc---c-ceEEEeccCCCCc------------EEEccCCC-C-CCC-CCCccEEEEcc
Q 022592 139 HSPSLVIADFGCGDA--RLAKSVK---N-KVFSFDLVSNDPS------------VIACDMSN-T-PLN-SSSVDVAVFCL 197 (294)
Q Consensus 139 ~~~~~~VLDiGcG~G--~~~~~l~---~-~v~gvD~s~~~~~------------~~~~d~~~-l-p~~-~~~fD~Vi~~~ 197 (294)
..++..||=.|+..| .++..|+ . .++++--+++... +...|+.. + .+. ...+|+|+-.-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 346788998885554 4555555 2 5555555542111 11111111 1 111 23599998765
Q ss_pred cccCCCHHHHHHHHHHhcCcCcEEEEEeecC
Q 022592 198 SLMGINFPNYLQEAQRVLKPSGWLLIAEVKS 228 (294)
Q Consensus 198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e~~~ 228 (294)
. ...+......|+++|.++.+...+
T Consensus 220 G------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 220 G------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred C------HHHHHHHHHHhccCCEEEEEecCC
Confidence 5 677888999999999999976544
No 425
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=23.35 E-value=76 Score=25.96 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=48.1
Q ss_pred CCCEEEEEcCcccHHHHHhccceEEEeccC---------C-CCcEEEccCC-CCCCCCCCccEEEEcccccCCCHHHHHH
Q 022592 141 PSLVIADFGCGDARLAKSVKNKVFSFDLVS---------N-DPSVIACDMS-NTPLNSSSVDVAVFCLSLMGINFPNYLQ 209 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~~~v~gvD~s~---------~-~~~~~~~d~~-~lp~~~~~fD~Vi~~~~l~~~~~~~~l~ 209 (294)
.+.+||=+|.=...+...|......+.... . ... +...+. ..|. ...||.||....=.-....-.|.
T Consensus 12 ~~k~vL~~g~~~D~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~-~~~~D~vvly~PKaK~e~~~lL~ 89 (155)
T PF08468_consen 12 EGKSVLFAGDPQDDLPAQLPAIAVSVHVFSYHHWYALQKQAQSN-VQFHFGAELPA-DQDFDTVVLYWPKAKAEAQYLLA 89 (155)
T ss_dssp TT-EEEEEE---SSHHHHS--SEEEEEESBHHHHHHHHHHHGGG-EEE-SS--HHH-HTT-SEEEEE--SSHHHHHHHHH
T ss_pred CCCeEEEEcCCchhhHHHhhhcCCEEEEEEchHHHHHhHhcccC-ceEeeeccCCc-ccCCCEEEEEccCcHHHHHHHHH
Confidence 455688888766667777763222222222 0 111 111111 1221 35699988542211112345688
Q ss_pred HHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEe
Q 022592 210 EAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKD 257 (294)
Q Consensus 210 el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 257 (294)
.+...|++||.|+|+.=+... .....++|+..| .+.+.+
T Consensus 90 ~l~~~L~~g~~i~vVGEnk~G--------IkSa~K~L~~~~-~~~KiD 128 (155)
T PF08468_consen 90 NLLSHLPPGTEIFVVGENKGG--------IKSAEKQLAPYG-KINKID 128 (155)
T ss_dssp HHHTTS-TT-EEEEEEEGGGT--------GGGHHHHHTTTS---EEE-
T ss_pred HHHHhCCCCCEEEEEecCccc--------HHHHHHHHHhhC-Ccceee
Confidence 889999999999998533322 255667777654 444443
No 426
>PLN02928 oxidoreductase family protein
Probab=22.84 E-value=83 Score=29.30 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=54.3
Q ss_pred CCCEEEEEcCcc-cHH-HHHhc---cceEEEeccCCCCcE-------------E--EccCCCCCCCCCCccEEEEccccc
Q 022592 141 PSLVIADFGCGD-ARL-AKSVK---NKVFSFDLVSNDPSV-------------I--ACDMSNTPLNSSSVDVAVFCLSLM 200 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~-~~~l~---~~v~gvD~s~~~~~~-------------~--~~d~~~lp~~~~~fD~Vi~~~~l~ 200 (294)
.+.+|.=||.|. |.. +..+. .+|+++|.+...... . .....++.---...|+|+....+.
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCC
Confidence 567899999875 542 33332 389999876321100 0 001111110113579999877665
Q ss_pred CCCHHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592 201 GINFPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD 248 (294)
Q Consensus 201 ~~~~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~ 248 (294)
.....-+-.+....+|||.+|+=+-- ..-.+.+.+.++|+.
T Consensus 238 ~~T~~li~~~~l~~Mk~ga~lINvaR-------G~lVde~AL~~AL~~ 278 (347)
T PLN02928 238 KETAGIVNDEFLSSMKKGALLVNIAR-------GGLLDYDAVLAALES 278 (347)
T ss_pred hHhhcccCHHHHhcCCCCeEEEECCC-------ccccCHHHHHHHHHc
Confidence 32222233567788899876665421 111355777777775
No 427
>PLN02494 adenosylhomocysteinase
Probab=22.75 E-value=2e+02 Score=28.16 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=49.7
Q ss_pred HHHHHHHhhccCCCCEEEEEcCccc-HHH-HHhc---cceEEEeccCCCC-c-----EEEccCCCCCCCCCCccEEEEcc
Q 022592 129 VNIIVKWLKDHSPSLVIADFGCGDA-RLA-KSVK---NKVFSFDLVSNDP-S-----VIACDMSNTPLNSSSVDVAVFCL 197 (294)
Q Consensus 129 ~~~~~~~l~~~~~~~~VLDiGcG~G-~~~-~~l~---~~v~gvD~s~~~~-~-----~~~~d~~~lp~~~~~fD~Vi~~~ 197 (294)
++-+++.......+.+|+=+|+|.= ... ..+. ..|+++|.++... . +...++.+. -...|+|+...
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEa---l~~ADVVI~tT 317 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDV---VSEADIFVTTT 317 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHH---HhhCCEEEECC
Confidence 3444444333235778999999842 211 1111 4788888876321 1 111122111 13479988643
Q ss_pred cccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 198 SLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 198 ~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
. +..-+..+....+|+||+|+.+.
T Consensus 318 G----t~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 318 G----NKDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred C----CccchHHHHHhcCCCCCEEEEcC
Confidence 2 22223477888999999999874
No 428
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=22.37 E-value=4e+02 Score=23.11 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=43.9
Q ss_pred CCCCEEEEEcCc--ccHHHHHhc----cceEEEeccCCCCc---------EEEccCCCCC------CCCCCccEEEEccc
Q 022592 140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPS---------VIACDMSNTP------LNSSSVDVAVFCLS 198 (294)
Q Consensus 140 ~~~~~VLDiGcG--~G~~~~~l~----~~v~gvD~s~~~~~---------~~~~d~~~lp------~~~~~fD~Vi~~~~ 198 (294)
.++..||-.||. .|..+..++ ..+++++.+..... ++..+..+.. .....+|+++.+..
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g 217 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVG 217 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECcc
Confidence 356789999983 333333333 36777766542211 1111110100 12235888876543
Q ss_pred ccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 199 LMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 199 l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
...+..+.+.++++|.++...
T Consensus 218 ------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 218 ------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ------HHHHHHHHHhhccCCEEEEEc
Confidence 245667788999999988754
No 429
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=22.31 E-value=2e+02 Score=30.06 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHH-HHHCCCeEEE
Q 022592 205 PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKA-VCDLGFAPVS 255 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~-l~~~Gf~~~~ 255 (294)
..+++++..+|+++|.++++--+.... ...++.++ +.++||.++.
T Consensus 568 ~~a~~~~rEll~ddg~lv~y~ahk~~e------aW~tlveA~~Rragl~iTr 613 (875)
T COG1743 568 REAFQAVRELLKDDGRLVTYYAHKAPE------AWITLVEAGWRRAGLQITR 613 (875)
T ss_pred HHHHHHHHHhcCCCCeEEEEEeccCcc------chHHHHHHHhhhcCceeec
Confidence 478999999999999999864332221 34566666 8999999988
No 430
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=22.26 E-value=2.6e+02 Score=25.24 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEee
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
..+|+|+.+.. ....+.++.+.|+++|.++....
T Consensus 229 ~~~d~vld~~g-----~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 229 EGVDVFLEMSG-----APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCCCEEEECCC-----CHHHHHHHHHhhcCCCEEEEEcc
Confidence 45899886522 14568889999999999887643
No 431
>PRK06701 short chain dehydrogenase; Provisional
Probab=22.25 E-value=5.2e+02 Score=22.83 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=47.8
Q ss_pred CCCEEEEEcCcccH---HHHHhc---cceEEEeccC---------------CCCcEEEccCCCCC-----CC-----CCC
Q 022592 141 PSLVIADFGCGDAR---LAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTP-----LN-----SSS 189 (294)
Q Consensus 141 ~~~~VLDiGcG~G~---~~~~l~---~~v~gvD~s~---------------~~~~~~~~d~~~lp-----~~-----~~~ 189 (294)
.+.+||-.|++.|. ++..++ ..|+.++.+. .++.++.+|+.+.. +. -+.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35678888876554 223333 3666766543 13557788876522 10 135
Q ss_pred ccEEEEcccccC-------CC--------------HHHHHHHHHHhcCcCcEEEEEe
Q 022592 190 VDVAVFCLSLMG-------IN--------------FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 190 fD~Vi~~~~l~~-------~~--------------~~~~l~el~r~LkpgG~l~i~e 225 (294)
+|+||.+..... .+ +..+++.+.+.++++|.++++.
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 899987765421 11 1234555666667778777653
No 432
>PLN00203 glutamyl-tRNA reductase
Probab=22.18 E-value=4.3e+02 Score=26.21 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=41.6
Q ss_pred CCEEEEEcCccc-HH-HHHhc----cceEEEeccCCCC----------cEEEccCCCCCCCCCCccEEEEcccccCC-CH
Q 022592 142 SLVIADFGCGDA-RL-AKSVK----NKVFSFDLVSNDP----------SVIACDMSNTPLNSSSVDVAVFCLSLMGI-NF 204 (294)
Q Consensus 142 ~~~VLDiGcG~G-~~-~~~l~----~~v~gvD~s~~~~----------~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~-~~ 204 (294)
+.+|+=||+|.= .. +..|. ..|+.++.+.... .....++.++.-.-..+|+|+++..-.+. -.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~ 345 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFL 345 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeC
Confidence 568999999642 21 22222 2588888776221 11111222222112468999987655442 22
Q ss_pred HHHHHHHHHhcCc-CcEEEEEeec
Q 022592 205 PNYLQEAQRVLKP-SGWLLIAEVK 227 (294)
Q Consensus 205 ~~~l~el~r~Lkp-gG~l~i~e~~ 227 (294)
...+..+...-+. |..++++|+.
T Consensus 346 ~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 346 KEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred HHHHHHhhhcccccCCCeEEEEeC
Confidence 3444444322111 2336666643
No 433
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=22.17 E-value=2.6e+02 Score=25.20 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=25.9
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEeec
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAEVK 227 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e~~ 227 (294)
..+|+|+.+.. ....+..+.++|+++|.++.....
T Consensus 231 ~~~d~v~d~~g-----~~~~~~~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 231 EGFDVGLEMSG-----APSAFRQMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred CCCCEEEECCC-----CHHHHHHHHHHHhcCCEEEEEecC
Confidence 45888886422 145788899999999999987643
No 434
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=22.11 E-value=1.4e+02 Score=25.06 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCC
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGF 251 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf 251 (294)
...+++.+.+.|+++ .+++.+ +...+ +.+.+.+..++++.+-
T Consensus 99 v~~a~~~i~~~l~~~-~lvV~~--STvpp---Gtt~~~~~~ile~~~~ 140 (185)
T PF03721_consen 99 VESAIESIAPVLRPG-DLVVIE--STVPP---GTTEELLKPILEKRSG 140 (185)
T ss_dssp HHHHHHHHHHHHCSC-EEEEES--SSSST---THHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhc-ceEEEc--cEEEE---eeehHhhhhhhhhhcc
Confidence 468899999999995 455533 22221 2233456677777653
No 435
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=22.04 E-value=1.6e+02 Score=25.54 Aligned_cols=43 Identities=7% Similarity=0.131 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCcC-cEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEE
Q 022592 206 NYLQEAQRVLKPS-GWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVS 255 (294)
Q Consensus 206 ~~l~el~r~Lkpg-G~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 255 (294)
.....+.+.++.+ ..|+++...... ..+.+..+|++.||+|..
T Consensus 215 ~~~~~i~~~l~~~~~~fvvVGa~HL~-------G~~gvl~lLr~~Gy~V~~ 258 (259)
T PF01963_consen 215 RWAEKIEELLKEGGTVFVVVGAGHLP-------GEDGVLDLLRKKGYTVEP 258 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEEcchhcc-------chhhHHHHHHhCCceeec
Confidence 4566777888887 566665432222 347899999999999864
No 436
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=22.00 E-value=59 Score=30.04 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=57.6
Q ss_pred CCCEEEEEcCcccHHHHHhc-------cceEEEeccCC-----CCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHH
Q 022592 141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVSN-----DPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL 208 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~~~~l~-------~~v~gvD~s~~-----~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l 208 (294)
.+.++-=||- |.++..++ -+|...|.++. ...+...++.++ -...|+|+....+......-+=
T Consensus 145 ~gktvGIiG~--GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~el---l~~sDii~l~~Plt~~T~hLin 219 (324)
T COG1052 145 RGKTLGIIGL--GRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDEL---LAESDIISLHCPLTPETRHLIN 219 (324)
T ss_pred CCCEEEEECC--CHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHH---HHhCCEEEEeCCCChHHhhhcC
Confidence 4667777755 55665554 26777777652 111222222221 1457998887777655555566
Q ss_pred HHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 022592 209 QEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCD 248 (294)
Q Consensus 209 ~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~ 248 (294)
.+....+|||++|+=+.-. .-.+.+.+.++|++
T Consensus 220 ~~~l~~mk~ga~lVNtaRG-------~~VDe~ALi~AL~~ 252 (324)
T COG1052 220 AEELAKMKPGAILVNTARG-------GLVDEQALIDALKS 252 (324)
T ss_pred HHHHHhCCCCeEEEECCCc-------cccCHHHHHHHHHh
Confidence 6778889999888765211 11356778888776
No 437
>PRK08324 short chain dehydrogenase; Validated
Probab=21.78 E-value=3.8e+02 Score=27.35 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=50.2
Q ss_pred CCCEEEEEcCcccH---HHHHhc---cceEEEeccCC-------------CCcEEEccCCCCC-----CC-----CCCcc
Q 022592 141 PSLVIADFGCGDAR---LAKSVK---NKVFSFDLVSN-------------DPSVIACDMSNTP-----LN-----SSSVD 191 (294)
Q Consensus 141 ~~~~VLDiGcG~G~---~~~~l~---~~v~gvD~s~~-------------~~~~~~~d~~~lp-----~~-----~~~fD 191 (294)
.+.+||=.|++.|. ++..+. ..|+++|.+.. .+.++.+|+.+.. +. .+.+|
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 34678888865443 222222 37888887651 4557778876532 11 23689
Q ss_pred EEEEcccccCC------C--------------HHHHHHHHHHhcCc---CcEEEEEe
Q 022592 192 VAVFCLSLMGI------N--------------FPNYLQEAQRVLKP---SGWLLIAE 225 (294)
Q Consensus 192 ~Vi~~~~l~~~------~--------------~~~~l~el~r~Lkp---gG~l~i~e 225 (294)
+|+.+...... + ...+++.+.+.++. ||.++++.
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 99988765431 1 23456666777766 67777753
No 438
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=21.76 E-value=1.3e+02 Score=23.50 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=40.1
Q ss_pred eEEEeccCCCCcEEEccCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHhcCcCc-EEEEEeecCCCCCCCCCCCHHH
Q 022592 163 VFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPSG-WLLIAEVKSRFDPNTGGADPNK 241 (294)
Q Consensus 163 v~gvD~s~~~~~~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG-~l~i~e~~~~~~~~~~~~~~~~ 241 (294)
++|+|++.....+...|... -+.....+.+ -...+..+...|+..| .++++|-...+ . ..
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~---------~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~v~~E~tg~y-------~-~~ 61 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG---------EKLRRFKFEN--DPAGLEKLLDWLASLGPVLVVMEATGGY-------W-RP 61 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC---------cEEEEEEEec--cccchhHHhhhhcccccccccccccccc-------c-hh
Confidence 57899888766665554432 1111112221 1233345555555554 44444433322 1 36
Q ss_pred HHHHHHHCCCeEEEEec
Q 022592 242 FSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 242 ~~~~l~~~Gf~~~~~~~ 258 (294)
+...|.+.|+.+.-+..
T Consensus 62 l~~~L~~~g~~v~~vnp 78 (144)
T PF01548_consen 62 LADFLQDAGIEVVVVNP 78 (144)
T ss_pred hhhheeccccccccccc
Confidence 66778888998876543
No 439
>COG4803 Predicted membrane protein [Function unknown]
Probab=21.65 E-value=2.7e+02 Score=22.83 Aligned_cols=46 Identities=11% Similarity=0.265 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEEec
Q 022592 205 PNYLQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSKDF 258 (294)
Q Consensus 205 ~~~l~el~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 258 (294)
+.|++++.+.+.||+..++.-+.. ++.+.+.+.++..|++++....
T Consensus 103 DdFik~l~~ti~pG~sALFvLi~k--------~t~DKVl~~~~g~~g~vlrTSL 148 (170)
T COG4803 103 DDFIKELGETIQPGSSALFVLISK--------MTEDKVLADLSGFGGTVLRTSL 148 (170)
T ss_pred HHHHHHHHhhcCCCCeEEEEEeec--------cchHHHHHHhhccCCEEEEccC
Confidence 689999999999999777754432 3557888888888888877544
No 440
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=21.65 E-value=1.4e+02 Score=22.03 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
..||++|+... +.++ ...+..+...++-||.+++..
T Consensus 10 ~e~~~~i~d~~-~g~~-pnal~a~~gtv~gGGllill~ 45 (92)
T PF08351_consen 10 QEFDLLIFDAF-EGFD-PNALAALAGTVRGGGLLILLL 45 (92)
T ss_dssp --BSSEEEE-S-S----HHHHHHHHTTB-TT-EEEEEE
T ss_pred CccCEEEEEcc-CCCC-HHHHHHHhcceecCeEEEEEc
Confidence 46888886531 2223 466778999999999999973
No 441
>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.60 E-value=1.5e+02 Score=27.08 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=32.5
Q ss_pred CHHHHHHH-HHHhcCcCcEEEEEeecCCCCCCCCCCCHHHHHHHHHHCCCeEEEE
Q 022592 203 NFPNYLQE-AQRVLKPSGWLLIAEVKSRFDPNTGGADPNKFSKAVCDLGFAPVSK 256 (294)
Q Consensus 203 ~~~~~l~e-l~r~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 256 (294)
++...+.+ ....|.+|++|+.+.-... +-++.+.++|++.||.++.+
T Consensus 251 ~RN~~wad~~~~~l~~G~~fvaVGAlHL-------~G~e~L~e~Lrk~g~t~trv 298 (299)
T COG3735 251 QRNRAWADKKTPLLQGGRYFVAVGALHL-------PGPEGLVELLRKDGFTVTRV 298 (299)
T ss_pred HHHHHHHHhhccccCCCCEEEEeccccc-------cCcccHHHHHHHcCCeeeec
Confidence 44555555 6667788888887643222 24478999999999998764
No 442
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=21.55 E-value=3.1e+02 Score=21.52 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=46.3
Q ss_pred EccCCCCCCCCCCccEEEEcccccC---CCHHHHHHHHHHhcCcCc--EEEEEeecCCCCCCCCCCCHHHHHHHHHHCCC
Q 022592 177 ACDMSNTPLNSSSVDVAVFCLSLMG---INFPNYLQEAQRVLKPSG--WLLIAEVKSRFDPNTGGADPNKFSKAVCDLGF 251 (294)
Q Consensus 177 ~~d~~~lp~~~~~fD~Vi~~~~l~~---~~~~~~l~el~r~LkpgG--~l~i~e~~~~~~~~~~~~~~~~~~~~l~~~Gf 251 (294)
+|-..++|- .-+.|.-+.++-++. ++...++..+.+.|..+| +|+++.+...+.- ...-+.+.-.+.|+++|+
T Consensus 47 vc~~~~vp~-~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStydtDhiL-Vr~~dLekAv~~L~eaGh 124 (128)
T COG3603 47 VCLADRVPD-VVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYDTDHIL-VREEDLEKAVKALEEAGH 124 (128)
T ss_pred EeecccCCc-ceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEeccCceEE-EehhhHHHHHHHHHHcCC
Confidence 333335542 223555577777764 477899999999999986 4444443322210 111255666788999999
Q ss_pred eEE
Q 022592 252 APV 254 (294)
Q Consensus 252 ~~~ 254 (294)
++.
T Consensus 125 ev~ 127 (128)
T COG3603 125 EVL 127 (128)
T ss_pred ccc
Confidence 874
No 443
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=21.25 E-value=1.4e+02 Score=26.88 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=41.5
Q ss_pred CEEEEEcCcc-c-HHHHHhc--c---ceEEEeccCCCCc---------EEEccCCCCCCCCCCccEEEEcccccCCCHHH
Q 022592 143 LVIADFGCGD-A-RLAKSVK--N---KVFSFDLVSNDPS---------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPN 206 (294)
Q Consensus 143 ~~VLDiGcG~-G-~~~~~l~--~---~v~gvD~s~~~~~---------~~~~d~~~lp~~~~~fD~Vi~~~~l~~~~~~~ 206 (294)
.+|.=||+|. | .++..+. . .|+++|.++.... ....+... .-..+|+|+.+.... ....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~---~~~~aDvViiavp~~--~~~~ 81 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAE---AVKGADLVILCVPVG--ASGA 81 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHH---HhcCCCEEEECCCHH--HHHH
Confidence 4788889885 2 2344443 2 6889998763211 01111111 113579988765432 1245
Q ss_pred HHHHHHHhcCcCcEEEE
Q 022592 207 YLQEAQRVLKPSGWLLI 223 (294)
Q Consensus 207 ~l~el~r~LkpgG~l~i 223 (294)
++.++...+++|+.++.
T Consensus 82 v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 82 VAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHhhCCCCCEEEe
Confidence 56667777888775543
No 444
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=21.09 E-value=65 Score=27.04 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=22.6
Q ss_pred CCccEEEEcccccCCC-----HHHHHHHHHHhcCcCcEEEEEe
Q 022592 188 SSVDVAVFCLSLMGIN-----FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~-----~~~~l~el~r~LkpgG~l~i~e 225 (294)
..||+||...+=...- ....++.+.+..+.||-|+++.
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmig 108 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMIG 108 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE-
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEEe
Confidence 5799999876533211 3566778888888888777764
No 445
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.51 E-value=59 Score=24.23 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=23.3
Q ss_pred EcCcccHHHHHhcc-------ceEEEeccCCCCcEEEccCCCCCCCCCCccEEEEcc
Q 022592 148 FGCGDARLAKSVKN-------KVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCL 197 (294)
Q Consensus 148 iGcG~G~~~~~l~~-------~v~gvD~s~~~~~~~~~d~~~lp~~~~~fD~Vi~~~ 197 (294)
+.||+|.-+..+.. .=.+++ +...++.+...+-....+|+|+++.
T Consensus 6 ~aCG~GvgSS~~ik~kve~~l~~~gi~-----~~~~~~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 6 AACGNGVGSSTMIKMKVEEVLKELGID-----VDVEQCAVDEIKALTDGADIIVTST 57 (93)
T ss_pred EECCCCccHHHHHHHHHHHHHHHcCCC-----ceeeeEEecccccCCCcccEEEEeh
Confidence 45999987665541 111221 1233333333333345689999873
No 446
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=20.44 E-value=2.2e+02 Score=26.53 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=44.1
Q ss_pred CCCEEEEEcCcc-cHHHHHhc----cceEEEeccCCC---------CcEEEccCCC---CCCCCCCccEEEEcccccCCC
Q 022592 141 PSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSND---------PSVIACDMSN---TPLNSSSVDVAVFCLSLMGIN 203 (294)
Q Consensus 141 ~~~~VLDiGcG~-G~~~~~l~----~~v~gvD~s~~~---------~~~~~~d~~~---lp~~~~~fD~Vi~~~~l~~~~ 203 (294)
++..||=.|+|. |.++..++ ..|++++.+++. +..+. +..+ +.-....+|+|+-+..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i-~~~~~~~v~~~~~~~D~vid~~G----- 251 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFL-VTTDSQKMKEAVGTMDFIIDTVS----- 251 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEE-cCcCHHHHHHhhCCCcEEEECCC-----
Confidence 567888888752 22333333 367888766421 11111 1110 0000124788775432
Q ss_pred HHHHHHHHHHhcCcCcEEEEEee
Q 022592 204 FPNYLQEAQRVLKPSGWLLIAEV 226 (294)
Q Consensus 204 ~~~~l~el~r~LkpgG~l~i~e~ 226 (294)
....+..+.++|++||.++....
T Consensus 252 ~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred cHHHHHHHHHhhcCCCEEEEEcc
Confidence 23467888899999999988653
No 447
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.28 E-value=4.4e+02 Score=21.98 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=48.6
Q ss_pred CCCEEEEEcCcccHH---HHHhc---cceEEEeccCC-------------CCcEEEccCCCCC-----C-----CCCCcc
Q 022592 141 PSLVIADFGCGDARL---AKSVK---NKVFSFDLVSN-------------DPSVIACDMSNTP-----L-----NSSSVD 191 (294)
Q Consensus 141 ~~~~VLDiGcG~G~~---~~~l~---~~v~gvD~s~~-------------~~~~~~~d~~~lp-----~-----~~~~fD 191 (294)
.+.+||-.|++.|.- +..+. ..|++++.++. ++.++.+|+.+.. + .-+.+|
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 345788888865432 22222 36888776552 4567788887532 0 013468
Q ss_pred EEEEcccccCC----C--------------HHHHHHHHHHhcCcCcEEEEEe
Q 022592 192 VAVFCLSLMGI----N--------------FPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 192 ~Vi~~~~l~~~----~--------------~~~~l~el~r~LkpgG~l~i~e 225 (294)
.++.+...... + +..+++.+...++++|.++++.
T Consensus 84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 88876653221 1 1234556666777888777754
No 448
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=20.11 E-value=5.2e+02 Score=23.18 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=24.3
Q ss_pred CCccEEEEcccccCCCHHHHHHHHHHhcCcCcEEEEEe
Q 022592 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPSGWLLIAE 225 (294)
Q Consensus 188 ~~fD~Vi~~~~l~~~~~~~~l~el~r~LkpgG~l~i~e 225 (294)
..+|+|+.+-. -...+.++.++|+++|.++...
T Consensus 230 ~~vd~vld~~g-----~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 230 TGVDVVLEMSG-----NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCCCEEEECCC-----CHHHHHHHHHHhccCCEEEEEc
Confidence 46888886432 1456788899999999988764
Done!