Query 022596
Match_columns 294
No_of_seqs 121 out of 138
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04505 Dispanin: Interferon- 64.1 4.2 9.1E-05 32.0 1.6 17 240-256 25-42 (82)
2 PF06814 Lung_7-TM_R: Lung sev 53.8 1.5E+02 0.0033 27.7 10.3 119 83-224 46-165 (295)
3 PF01456 Mucin: Mucin-like gly 50.9 10 0.00022 31.8 1.8 14 234-248 7-20 (143)
4 PF02326 YMF19: Plant ATP synt 42.6 14 0.0003 29.6 1.3 33 211-257 10-42 (86)
5 PF02656 DUF202: Domain of unk 33.6 86 0.0019 23.3 4.3 46 92-137 17-65 (73)
6 PF12273 RCR: Chitin synthesis 33.1 33 0.00073 28.6 2.2 10 236-245 12-21 (130)
7 COG3671 Predicted membrane pro 32.4 1.2E+02 0.0026 26.4 5.4 45 214-258 70-114 (125)
8 PF11712 Vma12: Endoplasmic re 30.4 1.1E+02 0.0024 26.0 5.0 26 173-198 79-104 (142)
9 PF03839 Sec62: Translocation 28.2 2E+02 0.0044 27.0 6.7 17 184-200 161-180 (224)
10 PF08372 PRT_C: Plant phosphor 27.2 2.8E+02 0.006 24.7 7.1 59 174-236 55-116 (156)
11 KOG1341 Na+/K+ transporter [In 25.5 89 0.0019 34.1 4.2 28 173-200 456-487 (854)
12 PF10601 zf-LITAF-like: LITAF- 23.8 66 0.0014 24.2 2.2 16 235-250 36-51 (73)
13 PF01534 Frizzled: Frizzled/Sm 23.4 4E+02 0.0088 26.1 8.1 27 106-132 38-64 (328)
14 PF02985 HEAT: HEAT repeat; I 22.9 47 0.001 20.9 1.0 17 56-72 9-25 (31)
15 smart00714 LITAF Possible memb 21.9 89 0.0019 23.2 2.5 9 242-250 37-45 (67)
16 PF02932 Neur_chan_memb: Neuro 20.6 1.9E+02 0.0041 23.2 4.4 26 219-244 33-65 (237)
17 smart00153 VHP Villin headpiec 20.5 53 0.0011 22.4 1.0 16 261-276 12-27 (36)
18 KOG1935 Membrane protein Patch 20.2 1.5E+02 0.0033 33.5 4.7 42 215-256 1026-1073(1143)
19 PF05478 Prominin: Prominin; 20.1 87 0.0019 34.0 3.0 29 213-245 89-117 (806)
20 PF07086 DUF1352: Protein of u 20.1 1.7E+02 0.0037 26.7 4.5 76 56-137 12-90 (186)
21 KOG4554 Protein involved in in 20.1 6E+02 0.013 23.4 7.8 105 93-200 5-116 (185)
22 COG5065 PHO88 Protein involved 20.1 6E+02 0.013 23.4 7.8 105 93-200 5-116 (185)
23 PTZ00201 amastin surface glyco 20.1 1.3E+02 0.0028 27.6 3.7 18 229-246 85-102 (192)
No 1
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=64.09 E-value=4.2 Score=32.02 Aligned_cols=17 Identities=41% Similarity=1.163 Sum_probs=11.3
Q ss_pred HHHHhhhhH-HHHHHhhh
Q 022596 240 IAVCCCLPC-ILGILYAL 256 (294)
Q Consensus 240 ~alCCCLPc-IIalLya~ 256 (294)
..+|||+|+ |+++.|+.
T Consensus 25 s~l~Cc~PlGi~Ai~~s~ 42 (82)
T PF04505_consen 25 STLCCCWPLGIVAIVYSS 42 (82)
T ss_pred HHHHHHhhHHHHHheech
Confidence 445899994 55556764
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=53.76 E-value=1.5e+02 Score=27.72 Aligned_cols=119 Identities=11% Similarity=0.138 Sum_probs=74.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhc-CCCCCCCchhhhhhhhhhhhhhHHHHhhhhhhhhccCCCcccCCCCCCCCCCCcC
Q 022596 83 PIIVLDVLWNLVFVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVT 161 (294)
Q Consensus 83 pwI~LelvwnlaqIvaAivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~ryr~r~~~~~~~~~~~~~~~~~~s~~ 161 (294)
|-..+-.+..++..+.++.-+... ++-+--.|+.-||.+..+=..+.+.+.+..|...|...... +
T Consensus 46 pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~-------------~ 112 (295)
T PF06814_consen 46 PLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIHYLILAVLILKMLELAFWFIYYHYINKTGTPS-------------E 112 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-------------c
Confidence 455666777777777777766666 45556789999999999988899999888888877643210 0
Q ss_pred CcccccccCCcchHHHHHhHHHHHHHHHHHHhhheeeeeccCCcccCCCCchhhhhhHHhhhh
Q 022596 162 GDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFD 224 (294)
Q Consensus 162 ~~~~~~~~~~~~s~i~k~le~alt~Ff~VWfVVGn~WVf~gg~ss~~dAP~LYwLCivFLAF~ 224 (294)
....-..+..-+|.++. +++=.++|--|-+ -...+.+.--+.-.+-+.+..++
T Consensus 113 -------~~~~~~~i~~~~k~~~~--~~llllis~Gygi-vkp~L~~~~~~v~~l~i~~~v~~ 165 (295)
T PF06814_consen 113 -------GWMIFAYIFSALKRTLS--FFLLLLISLGYGI-VKPSLGRREKKVLMLVILYFVFS 165 (295)
T ss_pred -------hHHHHHHHHHHHHHHHH--HHHHHHHhcchhe-eccccCcceeehhHHHHHHHHHH
Confidence 01123566677775544 4444678888877 33444333223333344444444
No 3
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=50.95 E-value=10 Score=31.78 Aligned_cols=14 Identities=43% Similarity=1.319 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhhH
Q 022596 234 VACLIGIAVCCCLPC 248 (294)
Q Consensus 234 lp~Li~~alCCCLPc 248 (294)
|=-|+.+||||| |.
T Consensus 7 LCalLvlaLcCC-ps 20 (143)
T PF01456_consen 7 LCALLVLALCCC-PS 20 (143)
T ss_pred HHHHHHHHHHcC-cc
Confidence 334778899998 65
No 4
>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=42.58 E-value=14 Score=29.59 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=22.2
Q ss_pred CchhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 022596 211 PQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALT 257 (294)
Q Consensus 211 P~LYwLCivFLAF~~~fvvicyalp~Li~~alCCCLPcIIalLya~~ 257 (294)
+|.+|+|+.|++|=.+ + +...||-|..++-.+.
T Consensus 10 sQ~fW~~i~f~~~y~~---~-----------~~~~lP~i~~~lk~R~ 42 (86)
T PF02326_consen 10 SQYFWLLIFFFFFYIF---L-----------VNFILPKISRILKLRS 42 (86)
T ss_pred HHHHHHHHHHHHHHHH---H-----------HHHHHHHHHHHHHHHH
Confidence 5789999988665442 1 1356898888885543
No 5
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=33.64 E-value=86 Score=23.30 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhhcCCCCCCC---chhhhhhhhhhhhhhHHHHhhhhh
Q 022596 92 NLVFVIVAFAVLGVSINEKPEV---PLRLRIVGYALQCLFHVFCVSLEF 137 (294)
Q Consensus 92 nlaqIvaAivVL~lSk~E~P~~---PLr~WIvGYa~gCv~~l~lv~~ry 137 (294)
.++.+++++.++-....+++.. .--..++|+.+-.+..+.+++..+
T Consensus 17 ~l~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (73)
T PF02656_consen 17 ALALVGVGLALLRFFSLDHPSSSASRRVSKVLGLLLIVLGLLTLIYGIY 65 (73)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776554321 334668888888887777766433
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.13 E-value=33 Score=28.64 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=4.2
Q ss_pred HHHHHHHHhh
Q 022596 236 CLIGIAVCCC 245 (294)
Q Consensus 236 ~Li~~alCCC 245 (294)
+||++++|||
T Consensus 12 i~l~~~~~~~ 21 (130)
T PF12273_consen 12 ILLFLFLFYC 21 (130)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 7
>COG3671 Predicted membrane protein [Function unknown]
Probab=32.39 E-value=1.2e+02 Score=26.38 Aligned_cols=45 Identities=20% Similarity=0.541 Sum_probs=32.7
Q ss_pred hhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 022596 214 YWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTE 258 (294)
Q Consensus 214 YwLCivFLAF~~~fvvicyalp~Li~~alCCCLPcIIalLya~~d 258 (294)
||+|+.+--.+.++..++.++..+....+-..+=|++.+.|-.++
T Consensus 70 Fw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~Riv~G~~yl~~g 114 (125)
T COG3671 70 FWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYRIVIGFKYLNEG 114 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 677776666666666666677777777788888888888887665
No 8
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=30.35 E-value=1.1e+02 Score=26.00 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=20.8
Q ss_pred chHHHHHhHHHHHHHHHHHHhhheee
Q 022596 173 DSSVAKNLESANTFLSFLWWIVGFYW 198 (294)
Q Consensus 173 ~s~i~k~le~alt~Ff~VWfVVGn~W 198 (294)
.+.+++-+=++..+|+++||..+-.|
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36788888899999999997777555
No 9
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=28.24 E-value=2e+02 Score=26.98 Aligned_cols=17 Identities=18% Similarity=0.747 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhh---eeeee
Q 022596 184 NTFLSFLWWIVG---FYWIT 200 (294)
Q Consensus 184 lt~Ff~VWfVVG---n~WVf 200 (294)
+-+|.++|++.| =.|+|
T Consensus 161 lilf~i~w~~~~g~~~fWlf 180 (224)
T PF03839_consen 161 LILFLITWFFTGGKHGFWLF 180 (224)
T ss_pred HHHHHHHHHHhcCCCCEEeC
Confidence 457999999983 37999
No 10
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=27.24 E-value=2.8e+02 Score=24.71 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=32.4
Q ss_pred hHHHHHhHHHHHHHHHHHHhhheeeeeccC--CcccC-CCCchhhhhhHHhhhhhhhhhHHHHHHH
Q 022596 174 SSVAKNLESANTFLSFLWWIVGFYWITASG--ETLIS-CSPQLYWLCVTFLAFDVVFVMICVGVAC 236 (294)
Q Consensus 174 s~i~k~le~alt~Ff~VWfVVGn~WVf~gg--~ss~~-dAP~LYwLCivFLAF~~~fvvicyalp~ 236 (294)
..+-++.+..-+...=|.=++|-+=-. |. +++.. ..|..=|++++|+...+ ++.|.+|+
T Consensus 55 ~~lr~Rydrlr~va~rvQ~vlgd~At~-gERl~allsWrdP~aT~lf~~~clv~a---vvly~vP~ 116 (156)
T PF08372_consen 55 DSLRMRYDRLRSVAGRVQNVLGDVATQ-GERLQALLSWRDPRATALFVVFCLVAA---VVLYFVPF 116 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCCccHHHHHHHHHHHHH---HHHHHhhH
Confidence 345557777777777777777754322 21 33322 45777777766643333 24455554
No 11
>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]
Probab=25.48 E-value=89 Score=34.09 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=23.9
Q ss_pred chHHHHHhHHHHHHHHHHHHhhhee----eee
Q 022596 173 DSSVAKNLESANTFLSFLWWIVGFY----WIT 200 (294)
Q Consensus 173 ~s~i~k~le~alt~Ff~VWfVVGn~----WVf 200 (294)
.+.-.|.+-+++..++.+|=++||| |+.
T Consensus 456 EyRAlk~Lcsil~vY~l~~nIvafV~llv~i~ 487 (854)
T KOG1341|consen 456 EYRALKCLCSILVVYFLGWNIVAFVTLLVFIY 487 (854)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677889999999999999999987 655
No 12
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=23.85 E-value=66 Score=24.22 Aligned_cols=16 Identities=44% Similarity=1.184 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhhHHH
Q 022596 235 ACLIGIAVCCCLPCIL 250 (294)
Q Consensus 235 p~Li~~alCCCLPcII 250 (294)
-|+++...|||+|+.+
T Consensus 36 l~~~~~~~~~~iP~~~ 51 (73)
T PF10601_consen 36 LCLFGCWPCCCIPFCC 51 (73)
T ss_pred HHHHHHHHHhhHhhcc
Confidence 3444444567888754
No 13
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=23.37 E-value=4e+02 Score=26.13 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=18.1
Q ss_pred cCCCCCCCchhhhhhhhhhhhhhHHHH
Q 022596 106 SINEKPEVPLRLRIVGYALQCLFHVFC 132 (294)
Q Consensus 106 Sk~E~P~~PLr~WIvGYa~gCv~~l~l 132 (294)
+|..+|+.|+.-=-+.|.+.++..+.=
T Consensus 38 ~rf~yPerpi~fl~~Cy~~~s~~~l~~ 64 (328)
T PF01534_consen 38 SRFRYPERPIIFLSFCYFIVSLGYLIR 64 (328)
T ss_pred cccCCccchhhHHHHHHHHHHHHHHHH
Confidence 366789999876566676666655443
No 14
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=22.87 E-value=47 Score=20.91 Aligned_cols=17 Identities=53% Similarity=0.687 Sum_probs=13.7
Q ss_pred cCCchhhhhhhhhhhhh
Q 022596 56 LREPSVRVRETAAEQLE 72 (294)
Q Consensus 56 ~r~~s~~vre~aaeqle 72 (294)
+..|+-.||++|++-+.
T Consensus 9 l~D~~~~VR~~a~~~l~ 25 (31)
T PF02985_consen 9 LNDPSPEVRQAAAECLG 25 (31)
T ss_dssp HT-SSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 68899999999998764
No 15
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=21.86 E-value=89 Score=23.17 Aligned_cols=9 Identities=78% Similarity=2.239 Sum_probs=6.0
Q ss_pred HHhhhhHHH
Q 022596 242 VCCCLPCIL 250 (294)
Q Consensus 242 lCCCLPcII 250 (294)
.|||+|+.+
T Consensus 37 ~~~~iP~~~ 45 (67)
T smart00714 37 FCCCLPCCL 45 (67)
T ss_pred HHHHHHHhc
Confidence 467788743
No 16
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=20.57 E-value=1.9e+02 Score=23.18 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=13.5
Q ss_pred HHhhhhhhhhhH-------HHHHHHHHHHHHHh
Q 022596 219 TFLAFDVVFVMI-------CVGVACLIGIAVCC 244 (294)
Q Consensus 219 vFLAF~~~fvvi-------cyalp~Li~~alCC 244 (294)
++||+.+|+.++ .|+.|.+.-..+|+
T Consensus 33 ~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~ 65 (237)
T PF02932_consen 33 TLLAMTVFLLMVAENLPPTSYAKPLDGWYFICT 65 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhcccccccchhhhhcccc
Confidence 367777765444 44445554444343
No 17
>smart00153 VHP Villin headpiece domain.
Probab=20.47 E-value=53 Score=22.45 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=14.1
Q ss_pred CCCHHHhhcCCCccee
Q 022596 261 GATEEEIDRLPKFKFS 276 (294)
Q Consensus 261 GAS~e~I~~LP~ykFk 276 (294)
|-|.++..+||.||=.
T Consensus 12 gmsr~eF~~LP~WKq~ 27 (36)
T smart00153 12 GMTREEFYKLPLWKQN 27 (36)
T ss_pred CCCHHHHHhCcHhhHH
Confidence 7799999999999854
No 18
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=20.16 E-value=1.5e+02 Score=33.48 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=28.9
Q ss_pred hhhhHHhhhhhhh-hh--HHHHHHHHHHHHHH---hhhhHHHHHHhhh
Q 022596 215 WLCVTFLAFDVVF-VM--ICVGVACLIGIAVC---CCLPCILGILYAL 256 (294)
Q Consensus 215 wLCivFLAF~~~f-vv--icyalp~Li~~alC---CCLPcIIalLya~ 256 (294)
||.+.+|+|+-|= || |+++|..++|+-+| |-||.+.++++--
T Consensus 1026 ~lgv~MLs~S~FdFvVryFf~~ltvl~~lGv~ngL~~lPVlLS~~GP~ 1073 (1143)
T KOG1935|consen 1026 LLGVLMLSFSEFDFVVRYFFAVLTVLTCLGVLNGLVVLPVLLSLVGPK 1073 (1143)
T ss_pred HhhHheeccCchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCC
Confidence 5666677766642 22 56777888888765 6799888888653
No 19
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.12 E-value=87 Score=34.03 Aligned_cols=29 Identities=21% Similarity=0.715 Sum_probs=16.4
Q ss_pred hhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 022596 213 LYWLCVTFLAFDVVFVMICVGVACLIGIAVCCC 245 (294)
Q Consensus 213 LYwLCivFLAF~~~fvvicyalp~Li~~alCCC 245 (294)
.||.-+++.++.++| .+.||++ |+..|||
T Consensus 89 ~~~g~~v~~~i~ll~---~il~P~v-g~~fCcC 117 (806)
T PF05478_consen 89 YEWGFLVCAVIGLLF---IILMPLV-GLCFCCC 117 (806)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH-HHHHhcc
Confidence 466666666666653 3335554 4466666
No 20
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=20.11 E-value=1.7e+02 Score=26.73 Aligned_cols=76 Identities=14% Similarity=0.041 Sum_probs=42.4
Q ss_pred cCCchhhhhhhhhhhhhhhccccccCccchhhHHH---HHHHHHHHHHHhhhhcCCCCCCCchhhhhhhhhhhhhhHHHH
Q 022596 56 LREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVL---WNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFC 132 (294)
Q Consensus 56 ~r~~s~~vre~aaeqleer~~~wayS~pwI~Lelv---wnlaqIvaAivVL~lSk~E~P~~PLr~WIvGYa~gCv~~l~l 132 (294)
=-+.-...||..|.|-.+-...=+.=|..+.+.++ +-++++.+.+. +.+++++-|.. ..|...|.+ -.+|.
T Consensus 12 TDGSDf~hRerVas~Yq~sa~~Ks~lk~l~~~h~ll~l~~~a~v~~~~L-~~i~~~~~p~p--~~Wey~~~l---S~ip~ 85 (186)
T PF07086_consen 12 TDGSDFSHRERVASHYQMSAQLKSRLKKLILFHALLWLLMAAKVSVDIL-LEISELQIPSP--YQWEYIWCL---SLIPS 85 (186)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccCCh--hHHHHHHHH---HHHHH
Confidence 35666788898888855543211222334444433 33456655555 56666666664 567765554 45555
Q ss_pred hhhhh
Q 022596 133 VSLEF 137 (294)
Q Consensus 133 v~~ry 137 (294)
+..+.
T Consensus 86 ~~G~~ 90 (186)
T PF07086_consen 86 LLGLL 90 (186)
T ss_pred HHHHH
Confidence 55544
No 21
>KOG4554 consensus Protein involved in inorganic phosphate transport [Inorganic ion transport and metabolism]
Probab=20.08 E-value=6e+02 Score=23.37 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhhcCCCCCCCchhhhhhhhhhhhh--hHHHHhhhhhhhh--ccCCCcccC-CCCCC-CCCCCcCCccc-
Q 022596 93 LVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCL--FHVFCVSLEFKRR--RRGEGVVFG-DSVSG-SSSTTVTGDEE- 165 (294)
Q Consensus 93 laqIvaAivVL~lSk~E~P~~PLr~WIvGYa~gCv--~~l~lv~~ryr~r--~~~~~~~~~-~~~~~-~~~~s~~~~~~- 165 (294)
++-|++++++.-+|+.=+=+.|=-+|++--.--|. .+++. .-|..+ +..+.-... ..+++ ..++.+++..+
T Consensus 5 ~~ni~isi~~MqiSrridf~~P~iiw~lR~lY~~sn~i~l~f--~iY~m~rI~a~ND~t~lky~epa~~fsg~s~ek~~~ 82 (185)
T KOG4554|consen 5 VVNIAISIASMQISRRIDFQDPKIIWYLRILYLCSNLIQLMF--SIYIMRRIKATNDCTKLKYVEPASPFSGGSEEKLVE 82 (185)
T ss_pred HHhHHHHHHHHHHhccccCCCCcchHHHHHHHHhccchhhhH--HHHHHHHHHhcCCcceEEEeccCCCCCCCCCceeEE
Confidence 34577899999999864444444566654444444 55555 444433 332211100 11111 12222222111
Q ss_pred ccccCCcchHHHHHhHHHHHHHHHHHHhhheeeee
Q 022596 166 ERFHGENDSSVAKNLESANTFLSFLWWIVGFYWIT 200 (294)
Q Consensus 166 ~~~~~~~~s~i~k~le~alt~Ff~VWfVVGn~WVf 200 (294)
.....-+.+.+.|..++++.-|... -++-+||-+
T Consensus 83 tTvrdYD~seL~ka~rs~~~~~aim-~fmHlym~y 116 (185)
T KOG4554|consen 83 TTVRDYDLSELTKASRSAVIGFAIM-SFMHLYMKY 116 (185)
T ss_pred eehhhccHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 1111113578899999988866555 346677755
No 22
>COG5065 PHO88 Protein involved in inorganic phosphate transport [Inorganic ion transport and metabolism]
Probab=20.08 E-value=6e+02 Score=23.37 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhhcCCCCCCCchhhhhhhhhhhhh--hHHHHhhhhhhhh--ccCCCcccC-CCCCC-CCCCCcCCccc-
Q 022596 93 LVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCL--FHVFCVSLEFKRR--RRGEGVVFG-DSVSG-SSSTTVTGDEE- 165 (294)
Q Consensus 93 laqIvaAivVL~lSk~E~P~~PLr~WIvGYa~gCv--~~l~lv~~ryr~r--~~~~~~~~~-~~~~~-~~~~s~~~~~~- 165 (294)
++-|++++++.-+|+.=+=+.|=-+|++--.--|. .+++. .-|..+ +..+.-... ..+++ ..++.+++..+
T Consensus 5 ~~ni~isi~~MqiSrridf~~P~iiw~lR~lY~~sn~i~l~f--~iY~m~rI~a~ND~t~lky~epa~~fsg~s~ek~~~ 82 (185)
T COG5065 5 VVNIAISIASMQISRRIDFQDPKIIWYLRILYLCSNLIQLMF--SIYIMRRIKATNDCTKLKYVEPASPFSGGSEEKLVE 82 (185)
T ss_pred HHhHHHHHHHHHHhccccCCCCcchHHHHHHHHhccchhhhH--HHHHHHHHHhcCCcceEEEeccCCCCCCCCCceeEE
Confidence 34577899999999864444444566654444444 55555 444433 332211100 11111 12222222111
Q ss_pred ccccCCcchHHHHHhHHHHHHHHHHHHhhheeeee
Q 022596 166 ERFHGENDSSVAKNLESANTFLSFLWWIVGFYWIT 200 (294)
Q Consensus 166 ~~~~~~~~s~i~k~le~alt~Ff~VWfVVGn~WVf 200 (294)
.....-+.+.+.|..++++.-|... -++-+||-+
T Consensus 83 tTvrdYD~seL~ka~rs~~~~~aim-~fmHlym~y 116 (185)
T COG5065 83 TTVRDYDLSELTKASRSAVIGFAIM-SFMHLYMKY 116 (185)
T ss_pred eehhhccHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 1111113578899999988866555 346677755
No 23
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=20.06 E-value=1.3e+02 Score=27.63 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 022596 229 MICVGVACLIGIAVCCCL 246 (294)
Q Consensus 229 vicyalp~Li~~alCCCL 246 (294)
++.|+.++++++...||.
T Consensus 85 I~v~~aA~vlg~~~l~cc 102 (192)
T PTZ00201 85 ILVYGAAFVLGLVLLYGC 102 (192)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 356778888766533333
Done!