Query 022596
Match_columns 294
No_of_seqs 121 out of 138
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 08:02:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 74.2 1.8 6E-05 32.5 2.4 21 259-279 14-34 (91)
2 1x4j_A Ring finger protein 38; 52.8 3.2 0.00011 29.5 0.3 19 262-280 1-19 (75)
3 4gc0_A D-xylose-proton symport 34.5 26 0.00089 31.6 3.3 15 256-270 463-477 (491)
4 3mtc_A Type II inositol-1,4,5- 24.1 24 0.00083 32.9 1.2 22 260-281 232-253 (313)
5 2ks1_B Epidermal growth factor 22.0 86 0.0029 21.4 3.3 33 109-144 6-41 (44)
6 1wy3_A Villin; structural prot 21.9 23 0.00079 23.2 0.4 14 261-274 11-24 (35)
7 2l6x_A GPR, green-light absorb 20.1 1.3E+02 0.0044 26.7 5.1 103 72-201 75-190 (243)
8 1und_A Advillin, P92; actin bi 19.9 27 0.00092 23.1 0.4 14 261-274 13-26 (37)
9 2l2t_A Receptor tyrosine-prote 15.6 1.4E+02 0.0048 20.4 3.2 32 110-144 6-40 (44)
10 1xio_A Anabaena sensory rhodop 15.4 87 0.003 28.2 2.8 105 71-201 69-186 (261)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=74.17 E-value=1.8 Score=32.49 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.4
Q ss_pred cCCCCHHHhhcCCCcceeecC
Q 022596 259 REGATEEEIDRLPKFKFSRID 279 (294)
Q Consensus 259 ~eGAS~e~I~~LP~ykFk~~~ 279 (294)
..|+|++.|++||.++++...
T Consensus 14 ~~~~s~~~i~~lp~~~~~~~~ 34 (91)
T 2l0b_A 14 NPPASKESIDALPEILVTEDH 34 (91)
T ss_dssp CCCCCHHHHHTSCEEECCTTC
T ss_pred CCCCCHHHHHhCCCeeecccc
Confidence 689999999999999987544
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.82 E-value=3.2 Score=29.52 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=15.1
Q ss_pred CCHHHhhcCCCcceeecCC
Q 022596 262 ATEEEIDRLPKFKFSRIDG 280 (294)
Q Consensus 262 AS~e~I~~LP~ykFk~~~~ 280 (294)
+|++.|++||+++|+..+.
T Consensus 1 gs~~~i~~lp~~~~~~~~~ 19 (75)
T 1x4j_A 1 GSSGSSGQLPSYRFNPNNH 19 (75)
T ss_dssp CCCCCCSSCCCEEBCSSSC
T ss_pred CcHhhHhhCCcEEecCccc
Confidence 4677899999999986543
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=34.50 E-value=26 Score=31.60 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=12.9
Q ss_pred hcccCCCCHHHhhcC
Q 022596 256 LTEREGATEEEIDRL 270 (294)
Q Consensus 256 ~~d~eGAS~e~I~~L 270 (294)
+-+++|-|-|||++|
T Consensus 463 ~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 463 VPETKGKTLEELEAL 477 (491)
T ss_dssp CCCCTTCCHHHHGGG
T ss_pred ecCCCCCCHHHHHHH
Confidence 446799999999987
No 4
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=24.06 E-value=24 Score=32.94 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.3
Q ss_pred CCCCHHHhhcCCCcceeecCCC
Q 022596 260 EGATEEEIDRLPKFKFSRIDGL 281 (294)
Q Consensus 260 eGAS~e~I~~LP~ykFk~~~~~ 281 (294)
.|-.|..|+=.|||||....+.
T Consensus 232 ~gf~E~~I~F~PTYKyd~~s~~ 253 (313)
T 3mtc_A 232 EGFTEGELTFQPTYKYDTGSDD 253 (313)
T ss_dssp TTCBCCCCCSCCCBCBCTTSSS
T ss_pred CCcccCCcCcCCCccCcCCCcc
Confidence 5888889999999999875543
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.04 E-value=86 Score=21.43 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=18.3
Q ss_pred CCCCCchhhhhhhhhhhhh---hHHHHhhhhhhhhccCC
Q 022596 109 EKPEVPLRLRIVGYALQCL---FHVFCVSLEFKRRRRGE 144 (294)
Q Consensus 109 E~P~~PLr~WIvGYa~gCv---~~l~lv~~ryr~r~~~~ 144 (294)
|.+++|. |.+-.+|.+ +.+.+++|-|++|++.+
T Consensus 6 ~~s~~~~---IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 6 NGPKIPS---IATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp CCSCSSS---STHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCcce---EEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 3455555 555555533 34555667777766543
No 6
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=21.88 E-value=23 Score=23.23 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=12.9
Q ss_pred CCCHHHhhcCCCcc
Q 022596 261 GATEEEIDRLPKFK 274 (294)
Q Consensus 261 GAS~e~I~~LP~yk 274 (294)
|-|.++.++||.||
T Consensus 11 gmsr~eF~~LP~WK 24 (35)
T 1wy3_A 11 GMTRSAFANLPLWL 24 (35)
T ss_dssp SSCHHHHHHSCHHH
T ss_pred CCCHHHHHHCcHHH
Confidence 77899999999998
No 7
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=20.07 E-value=1.3e+02 Score=26.70 Aligned_cols=103 Identities=13% Similarity=0.230 Sum_probs=60.6
Q ss_pred hhhccccccCccchhhHHHHH-----------HH-HHHHHHHhhhhcC-CCCCCCchhhhhhhhhhhhhhHHHHhhhhhh
Q 022596 72 EERQSYWAYSRPIIVLDVLWN-----------LV-FVIVAFAVLGVSI-NEKPEVPLRLRIVGYALQCLFHVFCVSLEFK 138 (294)
Q Consensus 72 eer~~~wayS~pwI~Lelvwn-----------la-qIvaAivVL~lSk-~E~P~~PLr~WIvGYa~gCv~~l~lv~~ryr 138 (294)
.-|--||.-.-|.+++|+... +. .|++++++++.-- .|--..+ -| .+|+++|++-+-++|.-+.
T Consensus 75 ~~RYidWllTvPLllvel~Li~~~~g~~~~~~~~~li~as~vMiv~G~~g~~~~~~--kw-~~f~is~~~~l~Ily~l~~ 151 (243)
T 2l6x_A 75 VFRYIDWLLTVPLLICEFYLILAAATNVAGSLFKKLLVGSLVMLVFGYMGEAGIMA--AW-PAFIIGCLAWVYMIYELWA 151 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCCTHHHHHHHHHHHHHHHHHHHHHHCSSC--TT-THHHHHHHHHHHHHHHHTT
T ss_pred eeehhcHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHhccc--HH-HHHHHHHHHHHHHHHHHHH
Confidence 349999999999999997754 22 3555555554311 1110011 22 5689999999999886555
Q ss_pred hhccCCCcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheeeeec
Q 022596 139 RRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (294)
Q Consensus 139 ~r~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~i~k~le~alt~Ff~VWfVVGn~WVf~ 201 (294)
---+...+ +....+.+-++..--++.+.|.+=-.+|...
T Consensus 152 ~~~~~~a~------------------------~~~~~v~~~f~~l~~~~~v~W~iYPi~w~l~ 190 (243)
T 2l6x_A 152 GEGKSACN------------------------TASPAVQSAYNTMMYIIIFGWAIYPVGYFTG 190 (243)
T ss_dssp CSTTTSSS------------------------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHh------------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21010000 0012333445555556778888877888884
No 8
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=19.92 E-value=27 Score=23.15 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=12.9
Q ss_pred CCCHHHhhcCCCcc
Q 022596 261 GATEEEIDRLPKFK 274 (294)
Q Consensus 261 GAS~e~I~~LP~yk 274 (294)
|-|.++.++||.||
T Consensus 13 gmsr~eF~~LP~WK 26 (37)
T 1und_A 13 GITRGQFAALPGWK 26 (37)
T ss_dssp SSCHHHHHHSCHHH
T ss_pred CcCHHHHHHChHHH
Confidence 78899999999997
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=15.56 E-value=1.4e+02 Score=20.41 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=18.6
Q ss_pred CCCCchhhhhhhhhhhhh---hHHHHhhhhhhhhccCC
Q 022596 110 KPEVPLRLRIVGYALQCL---FHVFCVSLEFKRRRRGE 144 (294)
Q Consensus 110 ~P~~PLr~WIvGYa~gCv---~~l~lv~~ryr~r~~~~ 144 (294)
.|+.|. |.|-.+|.+ +.+.+++|-|++|++.+
T Consensus 6 ~s~~~a---IA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 6 HARTPL---IAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp SCSSHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCcce---EEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 455655 666666644 34555667777666544
No 10
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=15.37 E-value=87 Score=28.24 Aligned_cols=105 Identities=16% Similarity=0.272 Sum_probs=61.6
Q ss_pred hhhhccccccCccchhhHHHHH-----------HH-HHHHHHHhhhhc-CCCCCCCchhhhhhhhhhhhhhHHHHhhhhh
Q 022596 71 LEERQSYWAYSRPIIVLDVLWN-----------LV-FVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEF 137 (294)
Q Consensus 71 leer~~~wayS~pwI~Lelvwn-----------la-qIvaAivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~ry 137 (294)
.--|--||.-.-|.+++|+... +. .|++++++++.- -.|--.....-| .+|+++|++.+.++|.-+
T Consensus 69 ~~~RYiDWllTvPLllvel~Li~l~~ag~~~~~~~~li~as~vMiv~G~~Ge~~~~~~~kw-~~f~is~~~~l~Ily~l~ 147 (261)
T 1xio_A 69 HYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVRY-LWYICGVCAFLIILWGIW 147 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred eeeHHhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHccCchHHH-HHHHHHHHHHHHHHHHHH
Confidence 4567789999999999998755 33 344444444431 122111111233 468999999999998666
Q ss_pred hhhccCCCcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheeeeec
Q 022596 138 KRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (294)
Q Consensus 138 r~r~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~i~k~le~alt~Ff~VWfVVGn~WVf~ 201 (294)
..-.+..++ ....+.+.++..--+..+.|.+--..|...
T Consensus 148 ~~~~~~a~~-------------------------~~~~v~~~f~~l~~~v~v~W~iYPI~w~l~ 186 (261)
T 1xio_A 148 NPLRAKTRT-------------------------QSSELANLYDKLVTYFTVLWIGYPIVWIIG 186 (261)
T ss_dssp THHHHHHTT-------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 532111000 012333445555556778888877778884
Done!