Query 022596
Match_columns 294
No_of_seqs 121 out of 138
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 08:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022596.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022596hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xioa_ f.13.1.1 (A:) Sensory 40.5 7.2 0.00052 32.1 2.7 102 74-201 72-186 (226)
2 d1yu8x1 a.14.1.1 (X:42-76) Vil 27.6 8.1 0.00059 23.9 0.6 15 261-275 11-25 (35)
3 d1uaza_ f.13.1.1 (A:) Archaerh 26.4 28 0.002 28.8 4.1 101 74-200 88-197 (236)
4 d1e12a_ f.13.1.1 (A:) Halorhod 25.3 8.9 0.00065 32.0 0.7 100 74-201 85-194 (239)
5 d1unda_ a.14.1.1 (A:) Advillin 23.7 9.5 0.00069 23.7 0.4 15 261-275 12-26 (36)
6 d1m0ka_ f.13.1.1 (A:) Bacterio 17.6 39 0.0029 27.6 3.2 101 74-200 78-187 (227)
7 d1v54l_ f.23.6.1 (L:) Mitochon 15.3 88 0.0064 20.2 3.8 32 203-238 7-38 (46)
8 d1yu5x1 a.14.1.1 (X:10-76) Vil 10.4 35 0.0026 23.6 0.6 14 261-274 43-56 (67)
9 d1qzpa_ a.14.1.1 (A:) Dematin 9.8 34 0.0025 23.8 0.4 14 261-274 44-57 (68)
10 d1i9za_ d.151.1.2 (A:) Synapto 8.4 54 0.0039 27.7 1.1 23 259-281 247-269 (345)
No 1
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=40.48 E-value=7.2 Score=32.06 Aligned_cols=102 Identities=17% Similarity=0.296 Sum_probs=61.9
Q ss_pred hccccccCccchhhHHHHHH------------HHHHHHHHhhhhc-CCCCCCCchhhhhhhhhhhhhhHHHHhhhhhhhh
Q 022596 74 RQSYWAYSRPIIVLDVLWNL------------VFVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRR 140 (294)
Q Consensus 74 r~~~wayS~pwI~Lelvwnl------------aqIvaAivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~ryr~r 140 (294)
|--||.-+-|.+.+++.+.+ ..++++++++..- -.|--..+-.- .+.|+++|++.+.++|.-|..-
T Consensus 72 RYiDW~lTtPlll~~l~l~~~~~~~~~~~~~~~li~~~~~Mi~~G~~g~~~~~~~~~-~~~f~~~~~~f~~i~y~l~~~~ 150 (226)
T d1xioa_ 72 RYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVR-YLWYICGVCAFLIILWGIWNPL 150 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHH-HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999987653 2234444444333 23311112123 3578999999888887665432
Q ss_pred ccCCCcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheeeeec
Q 022596 141 RRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (294)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~i~k~le~alt~Ff~VWfVVGn~WVf~ 201 (294)
.+...+ ......+-+...-.++.++|.+=+..|.+.
T Consensus 151 ~~~~~~-------------------------~~~~~~~~~~~l~~~~~v~W~~YPi~~~l~ 186 (226)
T d1xioa_ 151 RAKTRT-------------------------QSSELANLYDKLVTYFTVLWIGYPIVWIIG 186 (226)
T ss_dssp HHHHTT-------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcc-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 221100 012334445555667788999989999983
No 2
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.62 E-value=8.1 Score=23.93 Aligned_cols=15 Identities=33% Similarity=0.528 Sum_probs=13.4
Q ss_pred CCCHHHhhcCCCcce
Q 022596 261 GATEEEIDRLPKFKF 275 (294)
Q Consensus 261 GAS~e~I~~LP~ykF 275 (294)
|-|.++..+||+||=
T Consensus 11 gmsr~eF~~LP~WKq 25 (35)
T d1yu8x1 11 GMTRSAFANLPLWKQ 25 (35)
T ss_dssp SSCHHHHHTSCHHHH
T ss_pred CCCHHHHHHCcHhHH
Confidence 789999999999983
No 3
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=26.37 E-value=28 Score=28.82 Aligned_cols=101 Identities=16% Similarity=0.332 Sum_probs=63.6
Q ss_pred hccccccCccchhhHHHHH-------H-HHHHHHHHhhhhc-CCCCCCCchhhhhhhhhhhhhhHHHHhhhhhhhhccCC
Q 022596 74 RQSYWAYSRPIIVLDVLWN-------L-VFVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGE 144 (294)
Q Consensus 74 r~~~wayS~pwI~Lelvwn-------l-aqIvaAivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~ryr~r~~~~ 144 (294)
|--||.-.-|.+.+|+... + -.++++++++..- -.|--..|..- .+.|+++|++.+.++|.-+..-....
T Consensus 88 RYiDW~lTtPLll~~l~ll~~~~~~~~~~li~a~~~Miv~G~~ge~~~~~~~~-~~~~~~~~~~~~~i~y~l~~~~~~~~ 166 (236)
T d1uaza_ 88 RYADWLFTTPLLLLDLALLAKVDRVSIGTLVGVDALMIVTGLVGALSHTPLAR-YTWWLFSTICMIVVLYFLATSLRAAA 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHH-HHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999987643 1 2234444444333 23433334333 35799999999999887665433221
Q ss_pred CcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheeeee
Q 022596 145 GVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWIT 200 (294)
Q Consensus 145 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~i~k~le~alt~Ff~VWfVVGn~WVf 200 (294)
++ ....+.+-++..--++.++|.+=...|++
T Consensus 167 ~~-------------------------~~~~~~~~~~~l~~~~~v~W~iYPi~~~l 197 (236)
T d1uaza_ 167 KE-------------------------RGPEVASTFNTLTALVLVLWTAYPILWII 197 (236)
T ss_dssp TS-------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 01233445666677788899999999988
No 4
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=25.33 E-value=8.9 Score=32.00 Aligned_cols=100 Identities=18% Similarity=0.300 Sum_probs=62.1
Q ss_pred hccccccCccchhhHHHHH-------H-HHHHHHHHhhhhc-CCC-CCCCchhhhhhhhhhhhhhHHHHhhhhhhhhccC
Q 022596 74 RQSYWAYSRPIIVLDVLWN-------L-VFVIVAFAVLGVS-INE-KPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRG 143 (294)
Q Consensus 74 r~~~wayS~pwI~Lelvwn-------l-aqIvaAivVL~lS-k~E-~P~~PLr~WIvGYa~gCv~~l~lv~~ryr~r~~~ 143 (294)
|--||.-+-|.+.+|+.+. + ..++++.+++..- -.| .+.....-| +.|+++|++.+.++|.-+......
T Consensus 85 RYiDW~lTtPLll~~l~l~~~~~~~~~~~li~a~~~Miv~G~~ge~~~~~~~~~w-~~~~i~~~~~~~i~y~l~~~~~~~ 163 (239)
T d1e12a_ 85 RYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRW-AFYAISCAFFVVVLSALVTDWAAS 163 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHH-HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHccCchhHHH-HHHHHHHHHHHHHHHHHhccchhh
Confidence 8889999999999998753 2 3344445554443 244 232222344 678999999999998877654321
Q ss_pred CCcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheeeeec
Q 022596 144 EGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (294)
Q Consensus 144 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~i~k~le~alt~Ff~VWfVVGn~WVf~ 201 (294)
..+ + ..... ++..--++.++|.+=...|++.
T Consensus 164 ~~~------------------~------~~~~~---~~~l~~~~~v~W~iYPi~~~l~ 194 (239)
T d1e12a_ 164 ASS------------------A------GTAEI---FDTLRVLTVVLWLGYPIVWAVG 194 (239)
T ss_dssp HHH------------------H------TCHHH---HHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhh------------------H------HHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 110 0 01222 3334455678899999999883
No 5
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.67 E-value=9.5 Score=23.73 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.3
Q ss_pred CCCHHHhhcCCCcce
Q 022596 261 GATEEEIDRLPKFKF 275 (294)
Q Consensus 261 GAS~e~I~~LP~ykF 275 (294)
|-|.++.++||.||=
T Consensus 12 gmsr~eF~~LP~WKq 26 (36)
T d1unda_ 12 GITRGQFAALPGWKQ 26 (36)
T ss_dssp SSCHHHHHHSCHHHH
T ss_pred CcCHHHHHHCcHHHH
Confidence 789999999999983
No 6
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=17.61 E-value=39 Score=27.64 Aligned_cols=101 Identities=15% Similarity=0.265 Sum_probs=61.3
Q ss_pred hccccccCccchhhHHHHHH-------HHHHH-HHHhhhhc-CCCCCCCchhhhhhhhhhhhhhHHHHhhhhhhhhccCC
Q 022596 74 RQSYWAYSRPIIVLDVLWNL-------VFVIV-AFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGE 144 (294)
Q Consensus 74 r~~~wayS~pwI~Lelvwnl-------aqIva-AivVL~lS-k~E~P~~PLr~WIvGYa~gCv~~l~lv~~ryr~r~~~~ 144 (294)
|-.||.-.-|.+.+|+.... ..+++ +.+++..- -.|--..+-.-| ++|+++|++.+.++|.-|..-....
T Consensus 78 RYiDWllTtPLll~~l~li~~~~~~~~~~li~a~~~Mi~~G~~g~~~~~~~~k~-~~~~is~~~f~~i~~~l~~~~~~~a 156 (227)
T d1m0ka_ 78 RYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRF-VWWAISTAAMLYILYVLFFGFTSKA 156 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999976432 22333 33333221 123111111234 5799999999999888776532211
Q ss_pred CcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheeeee
Q 022596 145 GVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWIT 200 (294)
Q Consensus 145 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~i~k~le~alt~Ff~VWfVVGn~WVf 200 (294)
. +....+.+.++..-.+..++|.+=...|.+
T Consensus 157 ~-------------------------~~~~~~~~~~~~l~~~~~v~W~iYPI~~~l 187 (227)
T d1m0ka_ 157 E-------------------------SMRPEVASTFKVLRNVTVVLWSAYPVVWLI 187 (227)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-------------------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 011334555666677788999999999988
No 7
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.29 E-value=88 Score=20.15 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=21.3
Q ss_pred CCcccCCCCchhhhhhHHhhhhhhhhhHHHHHHHHH
Q 022596 203 GETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238 (294)
Q Consensus 203 g~ss~~dAP~LYwLCivFLAF~~~fvvicyalp~Li 238 (294)
|..+.-.--|-|.|...|-+|=. .+.+.||+|
T Consensus 7 G~NLPFsv~Nk~rLla~m~~~fG----sgfa~PF~i 38 (46)
T d1v54l_ 7 GKNIPFSVENKWRLLAMMTLFFG----SGFAAPFFI 38 (46)
T ss_dssp TTSSSSCCSSHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHHh----ccccchHHH
Confidence 45555566677888777654433 578888875
No 8
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.38 E-value=35 Score=23.61 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=11.8
Q ss_pred CCCHHHhhcCCCcc
Q 022596 261 GATEEEIDRLPKFK 274 (294)
Q Consensus 261 GAS~e~I~~LP~yk 274 (294)
|-|.++..+||.||
T Consensus 43 gms~~eF~~LP~WK 56 (67)
T d1yu5x1 43 GMTRSAFANLPLWK 56 (67)
T ss_dssp SSCHHHHHTSCHHH
T ss_pred CcCHHHHHHCcHHH
Confidence 77888888888887
No 9
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.84 E-value=34 Score=23.75 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=11.5
Q ss_pred CCCHHHhhcCCCcc
Q 022596 261 GATEEEIDRLPKFK 274 (294)
Q Consensus 261 GAS~e~I~~LP~yk 274 (294)
|-|.++.++||+||
T Consensus 44 gms~~eF~~Lp~WK 57 (68)
T d1qzpa_ 44 AMSPEEFGKLALWK 57 (68)
T ss_dssp SSCHHHHHHSCHHH
T ss_pred CcCHHHHHHCcHHH
Confidence 67888888888887
No 10
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=8.37 E-value=54 Score=27.73 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=18.4
Q ss_pred cCCCCHHHhhcCCCcceeecCCC
Q 022596 259 REGATEEEIDRLPKFKFSRIDGL 281 (294)
Q Consensus 259 ~eGAS~e~I~~LP~ykFk~~~~~ 281 (294)
-.|-.|..|+=+|||||....+.
T Consensus 247 ~~~~~E~~I~F~PTyk~~~~~~~ 269 (345)
T d1i9za_ 247 FPFFSELPITFPPTYKFDIGTDI 269 (345)
T ss_dssp STTCBCCCCCSCCCBCBCTTSSC
T ss_pred ccCcccCCCCCCCCCeEECCCCc
Confidence 35777889999999999976544
Done!