BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022597
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 145/234 (61%), Gaps = 16/234 (6%)
Query: 62 NKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
K + P LY Y+ + + L QLR ETA + G+ MQ+SP+QAQ L +L+ + GA
Sbjct: 14 GKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGA 73
Query: 121 QRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180
++ +E GYS+LA+AL LP G ++AC++D + +AKKY++
Sbjct: 74 KQVLEIGVFR---------------GYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ 118
Query: 181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGII 240
+AGV+ K+ ++ G A +L+ L +D F+DA+KR Y Y+E+ L L+R GG++
Sbjct: 119 KAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLM 178
Query: 241 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
VIDNVLWHGKV + +A+T ++ FN++L +DERV IS++P+GDGMT+ K+
Sbjct: 179 VIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK 232
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 140/229 (61%), Gaps = 17/229 (7%)
Query: 68 VTPPLYDYILR-NVREPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIE 125
+TP LY Y+L+ ++REP +L +LREET Q +P+QAQLLA+LV++ A++ I+
Sbjct: 11 LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKKVID 70
Query: 126 XXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 185
GYS++A L LP+ G L+ C+ D +S +AK+Y+E+AG+S
Sbjct: 71 IGTFT---------------GYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS 115
Query: 186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245
K+ ++ A D+L LI G+A YD ++DA+K Y+E L+L+R GG+I +DNV
Sbjct: 116 DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNV 175
Query: 246 LWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
L G+VAD+ IR FN+ + +DERV ++PIGDG+T+ +K+
Sbjct: 176 LRRGQVADEENQSENNQLIRLFNQKVYKDERVDXILIPIGDGLTLARKK 224
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 131/228 (57%), Gaps = 16/228 (7%)
Query: 66 ISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
+S+TP LY Y+L ++RE L LR+ET+ M + MQV+P+QAQ + ML+++ A++ +
Sbjct: 6 LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVL 65
Query: 125 EXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 184
E GYS+LA++L LP+ G ++ C+ + + A Y+ A
Sbjct: 66 ELGTFT---------------GYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ 110
Query: 185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244
HK+K++ G A D+L +L+ G +DF F+DA+K Y Y+EL L+L+ G+I IDN
Sbjct: 111 EHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDN 170
Query: 245 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQ 292
+ W GKV D +T I+ N+ + D RV +S++ I DGM + Q
Sbjct: 171 IFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQ 218
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 143/245 (58%), Gaps = 27/245 (11%)
Query: 62 NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
+++ IS+T L +YI RN VREP+ +LR+ET + + MQ+SP++ Q L +L +I GA
Sbjct: 2 SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61
Query: 121 QRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180
+R IE GYSSL A LPE G ++ C+ VA+KY++
Sbjct: 62 KRIIEIGTFT---------------GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWK 106
Query: 181 RAGVSHKVKIKHGLAADSLKALILNGEASSY--DFAF---------VDAEKRMYQEYFEL 229
G+ +K+ +K G A ++L+ LI + A S+ DFAF +DA+K Y Y+ L
Sbjct: 107 ENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPL 166
Query: 230 LLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMT 289
+L+L++ GG+++ DNVLW G VAD + T+ IR FN+ + D V +S+VPI DG++
Sbjct: 167 ILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVS 226
Query: 290 ICQKR 294
+ +KR
Sbjct: 227 LVRKR 231
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 124/234 (52%), Gaps = 29/234 (12%)
Query: 72 LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEXXX 128
LY YIL RE E +++LRE TA + M S D+ Q L+ML++++ A+ +E
Sbjct: 29 LYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGV 88
Query: 129 XXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188
GYS LA AL +PE G ++A + + + E+ ++AGV HK+
Sbjct: 89 YT---------------GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKI 133
Query: 189 KIKHGLAADSLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247
+ G A L +I + + SYDF FVDA+K Y Y + L+ L++VGG+I DN LW
Sbjct: 134 DFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLW 193
Query: 248 HGKVADQMVNDAK----TISIRNF----NKNLMEDERVSISMVPIGDGMTICQK 293
+G V DA R+F NK L D R+ I M+P+GDG+TIC++
Sbjct: 194 NGSVV--APPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR 245
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 129/239 (53%), Gaps = 20/239 (8%)
Query: 60 YSNKQVISVTPP----LYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
+ ++ + PP L+ Y+L R++RE LR LR T ++ +QAQLLA L
Sbjct: 5 WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64
Query: 115 VQILGAQRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEV 174
+++ A++ ++ GYS+LA+AL LP G +V CE DA+ E+
Sbjct: 65 ARLIQAKKALDLGTFT---------------GYSALALALALPADGRVVTCEVDAQPPEL 109
Query: 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI 234
+ + +A HK+ ++ A ++L L+ GEA ++D A VDA+K Y+E LQL+
Sbjct: 110 GRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLL 169
Query: 235 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
R GGI+ + VLW GKV D +RN N+ + D RV IS++P+GDG+T+ K
Sbjct: 170 RPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 34/233 (14%)
Query: 75 YILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEXXXXXX 131
YILR RE L++LRE S M SP QL++ +++++ A++ IE
Sbjct: 23 YILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFT- 81
Query: 132 XXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK 191
GYS L AL +P+ G + A + D + E+ + +AGV HK+
Sbjct: 82 --------------GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF- 126
Query: 192 HGLAADSLKAL--ILNGEAS--SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247
+ +D++ AL +L G+ S SYDF FVDA+K Y +Y E L++L++VGGI+ DN LW
Sbjct: 127 --IESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLW 184
Query: 248 HGKVA-------DQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
G VA D M + + ++ NK L D R+ I +P+GDG+T C++
Sbjct: 185 GGTVAQPESEVPDFMKENRE--AVIELNKLLAADPRIEIVHLPLGDGITFCRR 235
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 16/176 (9%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCL 162
VSP Q + L +LVQI GA+ +E GYS++ +A L G +
Sbjct: 42 VSPTQGKFLQLLVQIQGARNILEIGTLG---------------GYSTIWLARGLSSGGRV 86
Query: 163 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM 222
V E + ++A+ ERA ++ +V+++ GLA DSL+ I N + +DF F+DA+K+
Sbjct: 87 VTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQ-IENEKYEPFDFIFIDADKQN 145
Query: 223 YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS 278
YFE L+L R G +I+ DNV+ G+V D ND + IR F + + + RVS
Sbjct: 146 NPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVS 201
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 23/194 (11%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCL 162
V+ +Q Q LA+LV++ A+R +E GYS++ A LP G L
Sbjct: 47 VAANQGQFLALLVRLTQAKRILEIGTLG---------------GYSTIWXARELPADGQL 91
Query: 163 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM 222
+ E DA +VA++ + AGV +V ++ G A SL++L GE ++D F+DA+K
Sbjct: 92 LTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL---GECPAFDLIFIDADKPN 148
Query: 223 YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS-ISM 281
Y L+ R G +I+ DNV+ G+V + D + +R F + + R++ ++
Sbjct: 149 NPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEXXGAEPRLTATAL 208
Query: 282 VPIG----DGMTIC 291
+G DG T+
Sbjct: 209 QTVGTKGWDGFTLA 222
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
GYS++ A LPE+ +V+ ERD R E A K+ + G+ ++++ G A + L L
Sbjct: 66 GYSAIRXAQALPEA-TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELY 124
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK----T 261
+D F+DA K Y+ +F+ +R GG+I+ DNVL+ G VA+ + +
Sbjct: 125 ---PLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLFRGLVAETDIEHKRHKQLA 181
Query: 262 ISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
I +N+ L+E + + P+GDG+ I KR
Sbjct: 182 TKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR 214
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 10/153 (6%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
GYSS A + + + ER+ ++ AK+ ++V+I G A + + N
Sbjct: 83 GYSSXQFASI-SDDIHVTTIERNETXIQYAKQNLATYHFENQVRIIEGNALEQFE----N 137
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI--- 262
YD F+DA K +++FE+ L++ G+++ DNVL+HG V+D + ++ +
Sbjct: 138 VNDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQX 197
Query: 263 --SIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
++++N+ L++ + + + I DG+ I K
Sbjct: 198 VKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230
>pdb|3DR5|A Chain A, Crystal Structure Of The Q8nrd3_corgl Protein From
Corynebacterium Glutamicum. Northeast Structural
Genomics Consortium Target Cgr117
Length = 221
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 184 VSHKVKIKHGLAADSLKALILNGEASSYDF-AFVDAEKRMYQEYFELLLQLIRVGGIIVI 242
+S + + LA DS + ++ G+ S D A VDA L+R GG +V+
Sbjct: 115 LSRPLDVXSRLANDSYQ--LVFGQVSPXDLKALVDAA-----------WPLLRRGGALVL 161
Query: 243 DNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
+ L G +ADQ D T + R+ ++ + E ++ +P+G G+T+ K
Sbjct: 162 ADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTK 212
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
GYS++ +A +L L+ E + + ++ + AGV KV + G + D + L
Sbjct: 69 GYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKK 128
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 249
+ + D F+D K Y LL + L+R G +++ DNV+ G
Sbjct: 129 YDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPG 174
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
GYS++ +A +L L+ E + + ++ AG+ KV I +G + D + L
Sbjct: 70 GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK 129
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 249
+ + D F+D K Y LL + L+R G +++ DNV+ G
Sbjct: 130 YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 175
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
GYS++ +A +L L+ E + + ++ + AGV KV + G + D + L
Sbjct: 72 GYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKK 131
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 249
+ + D F+D K Y LL + L+R G +++ DNV+ G
Sbjct: 132 YDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPG 177
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
GYS++ +A +L L+ E + + ++ AG+ KV I +G + D + L
Sbjct: 72 GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK 131
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 249
+ + D F+D K Y LL + L+R G +++ DNV+ G
Sbjct: 132 YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 177
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
GYS++ +A +L L+ E + + ++ AG+ KV I +G + D + L
Sbjct: 70 GYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK 129
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 249
+ + D F+D K Y LL + L+R G +++ DNV+ G
Sbjct: 130 YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 175
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
GYS++ +A +L L+ E + + ++ + AG+ KV + G + D + L
Sbjct: 69 GYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGMKDKVTLVVGASQDIIPQLKKK 128
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 249
+ + D F+D K Y LL + L+R G +++ DNV+ G
Sbjct: 129 YDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPG 174
>pdb|3C3P|A Chain A, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|B Chain B, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|C Chain C, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
Length = 210
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 7/145 (4%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
G +S A + S +V + D ++E A++ G+ +V+++ G L +
Sbjct: 68 GCASWWFARAISISSRVVXIDPDRDNVEHARRXLHDNGLIDRVELQVG------DPLGIA 121
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIR 265
D F D + + E + + +++ N L G VA+ D +T ++R
Sbjct: 122 AGQRDIDILFXDCDVFNGADVLERXNRCLAKNALLIAVNALRRGSVAESH-EDPETAALR 180
Query: 266 NFNKNLMEDERVSISMVPIGDGMTI 290
FN +L ++VP+G+G+ +
Sbjct: 181 EFNHHLSRRRDFFTTIVPVGNGVLL 205
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 165 CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD------- 217
CE D +EV+K Y++ ++ K + D+ K L ++YD VD
Sbjct: 146 CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK--FLENVTNTYDVIIVDSSDPIGP 203
Query: 218 AEKRMYQEYFELLLQLIRVGGIIVID-NVLW-HGKVADQMVNDAKTISIRNFNKNLMEDE 275
AE Q ++E + ++ G V LW H M+ AK + F K +E
Sbjct: 204 AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL----FKK--VEYA 257
Query: 276 RVSISMVPIG-DGMTICQK 293
+SI P G G+ C K
Sbjct: 258 NISIPTYPCGCIGILCCSK 276
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 165 CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD------- 217
CE D +EV+K Y++ ++ K + D+ K L ++YD VD
Sbjct: 107 CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK--FLENVTNTYDVIIVDSSDPIGP 164
Query: 218 AEKRMYQEYFELLLQLIRVGGIIVID-NVLW-HGKVADQMVNDAKTISIRNFNKNLMEDE 275
AE Q ++E + ++ G V LW H M+ AK + F K +E
Sbjct: 165 AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL----FKK--VEYA 218
Query: 276 RVSISMVPIG-DGMTICQK 293
+SI P G G+ C K
Sbjct: 219 NISIPTYPCGCIGILCCSK 237
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 165 CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD------- 217
CE D +EV+K Y++ ++ K + D+ K L ++YD VD
Sbjct: 108 CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK--FLENVTNTYDVIIVDSSDPIGP 165
Query: 218 AEKRMYQEYFELLLQLIRVGGIIVID-NVLW-HGKVADQMVNDAKTISIRNFNKNLMEDE 275
AE Q ++E + ++ G V LW H M+ AK + F K +E
Sbjct: 166 AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL----FKK--VEYA 219
Query: 276 RVSISMVPIG-DGMTICQK 293
+SI P G G+ C K
Sbjct: 220 NISIPTYPCGCIGILCCSK 238
>pdb|2WZP|R Chain R, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
Length = 375
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 165 CERDARSL---EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR 221
E D R+L A + + R ++ +V IK + D+ + E S+Y+FA V + +
Sbjct: 196 SETDPRNLLFINFASRNWNRKRITTRVDIKQSVTMDTETIV----ERSAYNFAVVFVKNK 251
Query: 222 MYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD-QMVNDAKTI 262
+Y + I VID +HG D V AKT+
Sbjct: 252 ATDDYTDPPKMYIAKNNGDVIDYSTYHGDGTDLPDVRTAKTL 293
>pdb|2X54|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|0 Chain 0, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X5A|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|0 Chain 0, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
Length = 372
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 165 CERDARSL---EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR 221
E D R+L A + + R ++ +V IK + D+ + + S+Y+FA V + +
Sbjct: 196 SETDPRNLLFINFASRNWNRKRITTRVDIKQSVTMDTETIV----DRSAYNFAVVFVKNK 251
Query: 222 MYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD-QMVNDAKTI 262
+Y + I VID +HG D V AKT+
Sbjct: 252 ATDDYTDPPKMYIAKNNGDVIDYSTYHGDGTDLPDVRTAKTL 293
>pdb|2X53|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|1 Chain 1, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
Length = 375
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 165 CERDARSL---EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR 221
E D R+L A + + R ++ +V IK + D+ + + S+Y+FA V + +
Sbjct: 196 SETDPRNLLFINFASRNWNRKRITTRVDIKQSVTMDTETIV----DRSAYNFAVVFVKNK 251
Query: 222 MYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD-QMVNDAKTI 262
+Y + I VID +HG D V AKT+
Sbjct: 252 ATDDYTDPPKMYIAKNNGDVIDYSTYHGDGTDLPDVRTAKTL 293
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
GY++ ++ V+ E G +V+ E + E+AK+ ER G+ + + + D +
Sbjct: 87 GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFV----CGDGYYGV--- 139
Query: 206 GEASSYDFAFV 216
E S YD FV
Sbjct: 140 PEFSPYDVIFV 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,945,638
Number of Sequences: 62578
Number of extensions: 236485
Number of successful extensions: 697
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 26
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)