Query 022597
Match_columns 294
No_of_seqs 350 out of 2347
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02476 O-methyltransferase 100.0 9.4E-48 2E-52 357.1 29.0 278 1-294 1-278 (278)
2 PF01596 Methyltransf_3: O-met 100.0 2.2E-43 4.8E-48 315.4 23.2 200 80-294 5-205 (205)
3 KOG1663 O-methyltransferase [S 100.0 2.9E-43 6.3E-48 315.4 23.7 219 61-294 10-237 (237)
4 PLN02589 caffeoyl-CoA O-methyl 100.0 4.2E-41 9.2E-46 308.3 26.9 216 64-294 21-246 (247)
5 PLN02781 Probable caffeoyl-CoA 100.0 5.6E-39 1.2E-43 291.9 27.2 213 67-294 11-233 (234)
6 COG4122 Predicted O-methyltran 100.0 6.1E-39 1.3E-43 288.6 23.5 207 67-294 7-218 (219)
7 COG2230 Cfa Cyclopropane fatty 99.9 2.6E-23 5.7E-28 193.3 7.2 168 38-246 5-178 (283)
8 PF02353 CMAS: Mycolic acid cy 99.9 2.4E-22 5.1E-27 187.0 10.0 164 45-249 2-171 (273)
9 PRK11705 cyclopropane fatty ac 99.7 1.2E-17 2.6E-22 162.3 9.4 162 40-246 103-269 (383)
10 PF12847 Methyltransf_18: Meth 99.6 1.4E-15 3.1E-20 120.6 10.8 104 119-244 1-111 (112)
11 PRK00377 cbiT cobalt-precorrin 99.6 5.4E-14 1.2E-18 124.2 15.3 111 115-245 36-146 (198)
12 PRK04457 spermidine synthase; 99.6 9.8E-14 2.1E-18 128.4 17.6 113 110-243 57-176 (262)
13 TIGR02469 CbiT precorrin-6Y C5 99.6 9.4E-14 2E-18 111.3 13.7 107 116-244 16-122 (124)
14 COG2242 CobL Precorrin-6B meth 99.6 1.8E-13 4E-18 120.3 16.4 120 103-246 18-137 (187)
15 PLN03075 nicotianamine synthas 99.6 3.5E-14 7.5E-19 133.5 12.5 121 103-244 108-233 (296)
16 PRK08287 cobalt-precorrin-6Y C 99.5 2.9E-13 6.3E-18 118.2 16.7 117 104-245 16-132 (187)
17 TIGR00138 gidB 16S rRNA methyl 99.5 2E-13 4.4E-18 119.7 15.3 101 118-243 41-141 (181)
18 TIGR00080 pimt protein-L-isoas 99.5 1E-13 2.2E-18 124.0 13.5 116 103-243 61-176 (215)
19 PRK13944 protein-L-isoaspartat 99.5 1.7E-13 3.8E-18 121.9 13.2 117 105-245 58-174 (205)
20 PRK13942 protein-L-isoaspartat 99.5 2E-13 4.4E-18 122.3 12.5 118 101-243 58-175 (212)
21 PRK07402 precorrin-6B methylas 99.5 5.7E-13 1.2E-17 117.3 14.7 121 102-245 23-143 (196)
22 PF05175 MTS: Methyltransferas 99.5 3.2E-13 7E-18 116.8 12.2 110 109-242 21-138 (170)
23 PRK00107 gidB 16S rRNA methylt 99.5 4.6E-13 1E-17 118.3 13.2 100 120-244 46-145 (187)
24 PF13659 Methyltransf_26: Meth 99.5 4.5E-13 9.7E-18 107.2 11.0 101 121-242 2-113 (117)
25 PF13847 Methyltransf_31: Meth 99.5 8.1E-13 1.8E-17 111.5 12.8 107 119-246 3-112 (152)
26 COG2519 GCD14 tRNA(1-methylade 99.5 4.2E-13 9E-18 122.9 11.2 119 103-245 78-196 (256)
27 PRK00121 trmB tRNA (guanine-N( 99.5 4E-13 8.6E-18 119.5 10.6 122 100-243 23-155 (202)
28 PF13578 Methyltransf_24: Meth 99.5 9.3E-14 2E-18 110.4 5.9 102 124-245 1-106 (106)
29 COG2226 UbiE Methylase involve 99.5 6.3E-13 1.4E-17 121.6 12.0 106 119-247 51-159 (238)
30 PF01209 Ubie_methyltran: ubiE 99.5 5.6E-13 1.2E-17 121.5 11.5 107 117-245 45-154 (233)
31 TIGR02752 MenG_heptapren 2-hep 99.4 1.8E-12 3.9E-17 116.2 13.2 109 115-245 41-152 (231)
32 PRK14901 16S rRNA methyltransf 99.4 4.5E-12 9.7E-17 125.0 16.5 157 107-292 240-429 (434)
33 PRK11036 putative S-adenosyl-L 99.4 2.3E-12 4.9E-17 118.0 13.1 102 119-243 44-148 (255)
34 PF08704 GCD14: tRNA methyltra 99.4 1.6E-12 3.6E-17 119.5 12.1 122 103-244 24-146 (247)
35 COG2518 Pcm Protein-L-isoaspar 99.4 1.6E-12 3.5E-17 116.4 10.9 117 99-243 52-168 (209)
36 TIGR03533 L3_gln_methyl protei 99.4 4.4E-12 9.6E-17 118.6 14.1 118 103-243 101-250 (284)
37 COG4123 Predicted O-methyltran 99.4 2.1E-12 4.6E-17 118.5 11.5 120 102-242 28-168 (248)
38 PRK15128 23S rRNA m(5)C1962 me 99.4 7.4E-12 1.6E-16 122.4 16.0 111 116-245 217-340 (396)
39 COG1092 Predicted SAM-dependen 99.4 1E-11 2.2E-16 121.0 15.6 124 106-248 204-340 (393)
40 PF01135 PCMT: Protein-L-isoas 99.4 2.7E-12 5.9E-17 115.4 10.6 117 102-243 55-171 (209)
41 PRK00312 pcm protein-L-isoaspa 99.4 8.2E-12 1.8E-16 111.1 13.1 114 102-243 61-174 (212)
42 PRK14902 16S rRNA methyltransf 99.4 6.1E-12 1.3E-16 124.3 13.0 123 103-246 234-381 (444)
43 PLN02233 ubiquinone biosynthes 99.4 8.1E-12 1.8E-16 115.3 12.7 109 117-246 71-184 (261)
44 PRK11805 N5-glutamine S-adenos 99.3 1.5E-11 3.3E-16 116.3 14.1 118 103-243 113-262 (307)
45 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.4E-11 3.1E-16 108.7 13.0 105 119-243 16-131 (194)
46 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1.5E-11 3.2E-16 128.1 15.1 112 112-245 531-657 (702)
47 PRK14903 16S rRNA methyltransf 99.3 1.3E-11 2.8E-16 121.8 14.0 123 103-246 221-368 (431)
48 PRK10909 rsmD 16S rRNA m(2)G96 99.3 3.6E-11 7.9E-16 107.3 15.6 113 110-245 44-160 (199)
49 PRK00811 spermidine synthase; 99.3 3.6E-11 7.8E-16 112.5 16.2 105 118-243 75-190 (283)
50 PF07279 DUF1442: Protein of u 99.3 5.4E-11 1.2E-15 106.7 16.5 157 103-293 25-186 (218)
51 PRK01581 speE spermidine synth 99.3 2.5E-11 5.5E-16 117.0 15.4 107 116-243 147-267 (374)
52 PLN02244 tocopherol O-methyltr 99.3 1.5E-11 3.3E-16 117.6 13.5 106 118-246 117-225 (340)
53 PRK11873 arsM arsenite S-adeno 99.3 1.1E-11 2.5E-16 114.1 12.0 112 116-249 74-188 (272)
54 PRK15451 tRNA cmo(5)U34 methyl 99.3 2E-11 4.2E-16 111.6 13.3 105 119-246 56-166 (247)
55 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.3E-11 4.9E-16 112.5 13.8 122 103-246 55-201 (264)
56 TIGR00563 rsmB ribosomal RNA s 99.3 4.4E-11 9.5E-16 117.7 16.5 122 106-247 225-371 (426)
57 PRK10901 16S rRNA methyltransf 99.3 5.2E-11 1.1E-15 117.2 17.0 120 104-245 229-373 (427)
58 smart00828 PKS_MT Methyltransf 99.3 9.1E-12 2E-16 111.1 10.4 103 121-246 1-106 (224)
59 TIGR00740 methyltransferase, p 99.3 5.4E-11 1.2E-15 107.7 14.7 105 119-246 53-163 (239)
60 TIGR00537 hemK_rel_arch HemK-r 99.3 3.8E-11 8.2E-16 104.1 12.3 109 108-244 8-140 (179)
61 TIGR00536 hemK_fam HemK family 99.3 5.2E-11 1.1E-15 111.1 14.0 119 104-245 95-245 (284)
62 PLN02366 spermidine synthase 99.3 1.2E-10 2.7E-15 110.3 16.3 106 118-243 90-205 (308)
63 PRK14904 16S rRNA methyltransf 99.3 3.2E-11 7E-16 119.3 12.9 121 103-246 234-379 (445)
64 PRK00517 prmA ribosomal protei 99.3 2.2E-10 4.8E-15 104.9 17.4 98 118-246 118-215 (250)
65 PF13649 Methyltransf_25: Meth 99.3 2.7E-11 5.9E-16 95.3 9.7 93 123-238 1-101 (101)
66 PLN02396 hexaprenyldihydroxybe 99.3 3.1E-11 6.7E-16 115.0 11.8 104 119-246 131-237 (322)
67 TIGR00417 speE spermidine synt 99.3 1.6E-10 3.4E-15 107.2 16.0 105 118-243 71-185 (270)
68 PRK11207 tellurite resistance 99.3 4.5E-11 9.7E-16 105.8 11.4 103 117-245 28-136 (197)
69 PF08241 Methyltransf_11: Meth 99.3 1.1E-11 2.3E-16 94.2 6.3 92 124-242 1-95 (95)
70 TIGR00406 prmA ribosomal prote 99.3 1.1E-10 2.3E-15 109.3 14.3 104 118-246 158-261 (288)
71 TIGR00095 RNA methyltransferas 99.3 2.7E-10 5.8E-15 100.7 16.0 110 117-245 47-160 (189)
72 TIGR03534 RF_mod_PrmC protein- 99.3 1.1E-10 2.4E-15 105.2 13.9 116 104-243 70-216 (251)
73 PRK13943 protein-L-isoaspartat 99.3 7.9E-11 1.7E-15 112.3 13.4 116 103-243 64-179 (322)
74 PRK15001 SAM-dependent 23S rib 99.3 6.2E-11 1.3E-15 115.2 12.8 118 102-243 212-339 (378)
75 PF10672 Methyltrans_SAM: S-ad 99.2 1.1E-10 2.5E-15 109.5 14.0 123 103-245 107-239 (286)
76 PF03602 Cons_hypoth95: Conser 99.2 1.6E-10 3.4E-15 101.9 13.8 124 103-245 25-154 (183)
77 PRK14968 putative methyltransf 99.2 1.5E-10 3.2E-15 99.7 13.5 110 109-243 13-147 (188)
78 PRK04266 fibrillarin; Provisio 99.2 9.3E-11 2E-15 106.5 12.6 116 107-247 58-178 (226)
79 PRK01544 bifunctional N5-gluta 99.2 6.7E-11 1.5E-15 119.0 12.8 101 120-243 139-268 (506)
80 PRK08317 hypothetical protein; 99.2 1.9E-10 4.1E-15 101.8 14.2 116 112-250 12-130 (241)
81 TIGR00477 tehB tellurite resis 99.2 7.4E-11 1.6E-15 104.3 11.5 101 115-242 26-131 (195)
82 COG0742 N6-adenine-specific me 99.2 7.2E-11 1.6E-15 104.2 11.2 123 103-245 26-155 (187)
83 PRK01683 trans-aconitate 2-met 99.2 6.9E-11 1.5E-15 107.8 11.3 99 116-243 28-129 (258)
84 TIGR02716 C20_methyl_CrtF C-20 99.2 1.3E-10 2.8E-15 109.1 13.0 116 109-249 139-259 (306)
85 PRK14103 trans-aconitate 2-met 99.2 8.4E-11 1.8E-15 107.5 10.5 96 117-243 27-125 (255)
86 COG2227 UbiG 2-polyprenyl-3-me 99.2 8.2E-11 1.8E-15 107.2 10.0 105 118-248 58-165 (243)
87 PTZ00098 phosphoethanolamine N 99.2 1.4E-10 3.1E-15 107.2 11.5 107 115-247 48-159 (263)
88 TIGR01177 conserved hypothetic 99.2 1.9E-10 4E-15 109.5 12.6 117 102-243 165-293 (329)
89 TIGR03704 PrmC_rel_meth putati 99.2 5.1E-10 1.1E-14 103.0 14.6 100 120-243 87-215 (251)
90 PRK00216 ubiE ubiquinone/menaq 99.2 2.9E-10 6.4E-15 101.1 12.6 106 119-245 51-159 (239)
91 PRK14967 putative methyltransf 99.2 4E-10 8.8E-15 101.3 13.6 99 118-242 35-157 (223)
92 PRK03522 rumB 23S rRNA methylu 99.2 6.2E-10 1.3E-14 105.4 15.4 121 99-243 149-273 (315)
93 PRK09328 N5-glutamine S-adenos 99.2 3.1E-10 6.6E-15 104.1 12.5 116 104-243 90-237 (275)
94 COG2890 HemK Methylase of poly 99.2 3.9E-10 8.5E-15 105.5 13.1 117 104-245 93-239 (280)
95 PRK12335 tellurite resistance 99.2 3.1E-10 6.8E-15 105.9 12.4 100 116-242 117-221 (287)
96 COG2264 PrmA Ribosomal protein 99.2 1.9E-10 4.2E-15 108.3 10.7 112 109-246 154-265 (300)
97 PLN02823 spermine synthase 99.2 1E-09 2.2E-14 105.3 15.5 104 119-243 103-219 (336)
98 PRK15068 tRNA mo(5)U34 methylt 99.1 4.3E-10 9.2E-15 107.1 12.8 110 116-249 119-231 (322)
99 PRK14121 tRNA (guanine-N(7)-)- 99.1 5.7E-10 1.2E-14 108.7 13.7 103 119-242 122-233 (390)
100 PRK09489 rsmC 16S ribosomal RN 99.1 5.6E-10 1.2E-14 107.3 13.3 113 103-242 181-301 (342)
101 PRK14966 unknown domain/N5-glu 99.1 5.3E-10 1.1E-14 109.7 13.3 117 104-243 235-380 (423)
102 PF06325 PrmA: Ribosomal prote 99.1 3.6E-10 7.8E-15 106.6 10.5 114 107-247 148-262 (295)
103 PLN02336 phosphoethanolamine N 99.1 6.1E-10 1.3E-14 110.5 12.6 107 116-247 263-372 (475)
104 TIGR02085 meth_trns_rumB 23S r 99.1 2.5E-09 5.5E-14 103.7 15.6 120 99-243 209-333 (374)
105 COG2813 RsmC 16S RNA G1207 met 99.1 1.1E-09 2.3E-14 103.0 12.4 115 102-242 142-264 (300)
106 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1.2E-09 2.6E-14 96.2 12.0 103 119-245 39-144 (223)
107 TIGR02072 BioC biotin biosynth 99.1 1.3E-09 2.8E-14 96.7 12.0 101 119-246 34-137 (240)
108 PRK05134 bifunctional 3-demeth 99.1 3.9E-09 8.4E-14 94.8 15.2 118 103-245 32-152 (233)
109 PRK03612 spermidine synthase; 99.1 7.3E-10 1.6E-14 111.9 11.6 106 118-244 296-415 (521)
110 PRK13168 rumA 23S rRNA m(5)U19 99.1 2.7E-09 5.8E-14 105.6 15.3 121 101-243 275-399 (443)
111 TIGR03587 Pse_Me-ase pseudamin 99.1 2.6E-09 5.5E-14 95.5 13.4 103 116-249 40-147 (204)
112 PRK11088 rrmA 23S rRNA methylt 99.1 2.3E-09 5E-14 99.2 13.6 158 49-243 19-180 (272)
113 TIGR00479 rumA 23S rRNA (uraci 99.1 3.3E-09 7.2E-14 104.3 15.4 120 101-242 270-394 (431)
114 PRK06922 hypothetical protein; 99.1 2E-09 4.4E-14 110.3 13.9 112 112-245 411-538 (677)
115 TIGR03438 probable methyltrans 99.1 4.7E-09 1E-13 98.9 15.4 111 119-245 63-178 (301)
116 PRK10258 biotin biosynthesis p 99.0 8.5E-10 1.9E-14 100.4 9.7 108 108-245 31-141 (251)
117 TIGR00452 methyltransferase, p 99.0 1.9E-09 4.2E-14 102.5 12.3 109 117-249 119-230 (314)
118 PRK05031 tRNA (uracil-5-)-meth 99.0 8.5E-09 1.9E-13 99.7 15.8 124 98-243 182-319 (362)
119 PLN02490 MPBQ/MSBQ methyltrans 99.0 2.5E-09 5.3E-14 102.8 11.8 99 119-243 113-214 (340)
120 TIGR02021 BchM-ChlM magnesium 99.0 5.5E-09 1.2E-13 93.3 13.2 101 117-244 53-158 (219)
121 PF08242 Methyltransf_12: Meth 99.0 5.9E-11 1.3E-15 92.7 0.4 96 124-240 1-99 (99)
122 PRK07580 Mg-protoporphyrin IX 99.0 7.4E-09 1.6E-13 92.3 13.9 98 118-242 62-164 (230)
123 PF03848 TehB: Tellurite resis 99.0 3.1E-09 6.7E-14 94.5 11.3 104 115-245 26-134 (192)
124 PTZ00146 fibrillarin; Provisio 99.0 3E-09 6.5E-14 100.1 11.6 107 116-243 129-236 (293)
125 cd02440 AdoMet_MTases S-adenos 99.0 6.8E-09 1.5E-13 77.9 11.5 99 122-243 1-103 (107)
126 TIGR03840 TMPT_Se_Te thiopurin 99.0 2.7E-09 5.9E-14 96.1 10.7 101 119-245 34-153 (213)
127 TIGR01983 UbiG ubiquinone bios 99.0 8.7E-09 1.9E-13 91.6 13.2 103 119-245 45-150 (224)
128 smart00650 rADc Ribosomal RNA 99.0 6.6E-09 1.4E-13 89.5 11.7 113 116-255 10-124 (169)
129 PRK04338 N(2),N(2)-dimethylgua 99.0 1.4E-08 3E-13 99.0 15.2 120 100-243 37-157 (382)
130 KOG1540 Ubiquinone biosynthesi 99.0 4.2E-09 9E-14 96.9 10.6 105 118-243 99-213 (296)
131 PRK11933 yebU rRNA (cytosine-C 99.0 9E-09 1.9E-13 102.8 13.7 125 102-247 94-245 (470)
132 COG4106 Tam Trans-aconitate me 99.0 1.1E-09 2.3E-14 98.7 6.3 101 114-243 25-128 (257)
133 PRK11188 rrmJ 23S rRNA methylt 99.0 5.9E-09 1.3E-13 93.4 11.2 99 118-243 50-164 (209)
134 PRK13255 thiopurine S-methyltr 99.0 6.1E-09 1.3E-13 94.1 11.3 98 119-242 37-153 (218)
135 PLN02336 phosphoethanolamine N 99.0 5.5E-09 1.2E-13 103.7 11.9 109 115-248 33-146 (475)
136 COG0220 Predicted S-adenosylme 98.9 9.2E-09 2E-13 93.7 12.0 102 121-242 50-162 (227)
137 PF13489 Methyltransf_23: Meth 98.9 1.1E-08 2.3E-13 85.3 11.5 105 107-246 9-117 (161)
138 KOG1270 Methyltransferases [Co 98.9 1.6E-09 3.5E-14 99.8 6.7 100 120-246 90-197 (282)
139 TIGR00438 rrmJ cell division p 98.9 1E-08 2.3E-13 89.6 11.6 103 114-243 27-145 (188)
140 PF02390 Methyltransf_4: Putat 98.9 1.3E-08 2.8E-13 90.5 12.2 101 122-242 20-131 (195)
141 COG2520 Predicted methyltransf 98.9 2.9E-09 6.4E-14 102.0 8.6 104 119-246 188-291 (341)
142 TIGR02143 trmA_only tRNA (urac 98.9 3.8E-08 8.3E-13 94.9 16.2 123 99-243 174-310 (353)
143 PF01564 Spermine_synth: Sperm 98.9 1.9E-08 4E-13 92.5 13.2 105 119-244 76-191 (246)
144 KOG2904 Predicted methyltransf 98.9 1.1E-08 2.3E-13 95.0 11.1 122 103-245 126-286 (328)
145 smart00138 MeTrc Methyltransfe 98.9 2.2E-08 4.8E-13 92.8 13.4 106 119-245 99-243 (264)
146 COG0421 SpeE Spermidine syntha 98.9 3.1E-08 6.8E-13 92.9 14.2 103 120-243 77-189 (282)
147 TIGR00308 TRM1 tRNA(guanine-26 98.9 2.6E-08 5.6E-13 96.9 14.2 124 98-243 19-146 (374)
148 PF04989 CmcI: Cephalosporin h 98.9 1.1E-08 2.3E-13 91.8 10.5 158 102-279 15-185 (206)
149 KOG1271 Methyltransferases [Ge 98.9 2E-08 4.4E-13 88.4 11.6 122 105-248 46-185 (227)
150 PF02475 Met_10: Met-10+ like- 98.9 1.1E-08 2.4E-13 91.5 10.1 99 119-241 101-199 (200)
151 PLN02672 methionine S-methyltr 98.9 2.6E-08 5.5E-13 107.5 14.4 104 120-244 119-278 (1082)
152 PF05401 NodS: Nodulation prot 98.9 9.3E-09 2E-13 91.5 9.1 143 120-292 44-193 (201)
153 PHA03412 putative methyltransf 98.8 6.5E-08 1.4E-12 88.6 13.8 118 99-246 31-165 (241)
154 COG2263 Predicted RNA methylas 98.8 2.4E-07 5.3E-12 82.0 16.3 105 101-233 24-136 (198)
155 PRK06202 hypothetical protein; 98.8 2.7E-08 5.9E-13 89.7 10.6 113 108-247 49-169 (232)
156 PF10294 Methyltransf_16: Puta 98.8 9.7E-08 2.1E-12 83.1 12.7 110 116-245 42-157 (173)
157 PRK11727 23S rRNA mA1618 methy 98.8 1.3E-07 2.9E-12 90.2 14.3 145 57-219 23-198 (321)
158 KOG2915 tRNA(1-methyladenosine 98.8 4.6E-08 1E-12 90.7 10.5 119 99-239 86-204 (314)
159 PF01170 UPF0020: Putative RNA 98.7 1.4E-07 3E-12 82.7 12.4 121 102-243 11-150 (179)
160 COG0144 Sun tRNA and rRNA cyto 98.7 2.3E-07 5E-12 89.6 15.0 127 102-247 139-291 (355)
161 KOG4300 Predicted methyltransf 98.7 4.6E-08 9.9E-13 87.7 9.1 97 121-242 78-180 (252)
162 PRK05785 hypothetical protein; 98.7 1E-07 2.3E-12 86.3 10.8 88 119-238 51-141 (226)
163 COG2521 Predicted archaeal met 98.7 3.7E-08 8E-13 89.7 7.3 111 116-249 131-249 (287)
164 COG3963 Phospholipid N-methylt 98.7 1.7E-07 3.6E-12 81.6 11.0 126 98-245 27-157 (194)
165 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.7 9.2E-07 2E-11 82.9 17.0 153 102-285 68-249 (283)
166 PF09445 Methyltransf_15: RNA 98.7 3.9E-08 8.5E-13 85.3 7.1 78 122-220 2-79 (163)
167 PF08003 Methyltransf_9: Prote 98.7 1.4E-07 3.1E-12 89.0 11.3 112 115-250 111-225 (315)
168 PLN02585 magnesium protoporphy 98.7 2.8E-07 6E-12 87.8 13.4 96 119-242 144-248 (315)
169 COG2265 TrmA SAM-dependent met 98.7 3.8E-07 8.1E-12 90.4 13.7 123 98-243 268-395 (432)
170 PHA03411 putative methyltransf 98.6 2.5E-07 5.5E-12 86.5 10.7 98 117-243 62-182 (279)
171 PTZ00338 dimethyladenosine tra 98.6 5.1E-07 1.1E-11 85.2 12.9 93 101-219 18-110 (294)
172 PF05724 TPMT: Thiopurine S-me 98.6 2.9E-07 6.2E-12 83.3 10.7 124 101-248 20-159 (218)
173 PF02527 GidB: rRNA small subu 98.6 3.4E-07 7.3E-12 80.9 10.8 96 122-242 51-146 (184)
174 PF00891 Methyltransf_2: O-met 98.6 3.9E-07 8.5E-12 82.5 10.3 106 110-248 91-203 (241)
175 PF05185 PRMT5: PRMT5 arginine 98.6 4.2E-07 9.1E-12 90.4 10.7 103 120-244 187-297 (448)
176 PRK14896 ksgA 16S ribosomal RN 98.5 9.9E-07 2.2E-11 81.3 12.2 92 99-219 9-100 (258)
177 COG1041 Predicted DNA modifica 98.5 5.3E-07 1.1E-11 86.5 10.2 118 101-243 179-309 (347)
178 PRK13256 thiopurine S-methyltr 98.5 2.1E-06 4.5E-11 78.3 12.8 125 100-249 25-168 (226)
179 KOG2899 Predicted methyltransf 98.5 4.2E-07 9.2E-12 83.3 7.9 111 119-250 58-215 (288)
180 KOG3191 Predicted N6-DNA-methy 98.5 2.8E-06 6.2E-11 74.9 12.1 102 120-245 44-169 (209)
181 KOG1661 Protein-L-isoaspartate 98.5 1E-06 2.2E-11 79.2 9.5 112 108-243 70-192 (237)
182 KOG1499 Protein arginine N-met 98.4 7.9E-07 1.7E-11 85.0 9.0 103 117-245 58-168 (346)
183 PRK00050 16S rRNA m(4)C1402 me 98.4 1.3E-06 2.9E-11 82.5 9.9 83 118-220 18-100 (296)
184 TIGR02081 metW methionine bios 98.4 8.4E-07 1.8E-11 77.9 8.0 89 119-236 13-104 (194)
185 TIGR00755 ksgA dimethyladenosi 98.4 3.3E-06 7.1E-11 77.5 12.0 103 100-231 10-115 (253)
186 PRK00536 speE spermidine synth 98.4 4E-06 8.6E-11 78.0 12.3 98 118-244 71-171 (262)
187 PRK01544 bifunctional N5-gluta 98.4 3.3E-06 7.1E-11 85.3 12.5 103 119-242 347-460 (506)
188 PRK00274 ksgA 16S ribosomal RN 98.4 4.8E-06 1E-10 77.4 12.5 103 101-231 24-126 (272)
189 COG0357 GidB Predicted S-adeno 98.3 1.7E-06 3.8E-11 78.2 8.5 98 120-242 68-166 (215)
190 PF07021 MetW: Methionine bios 98.3 2.6E-06 5.7E-11 75.7 9.1 127 119-274 13-158 (193)
191 PF03059 NAS: Nicotianamine sy 98.3 3E-06 6.6E-11 79.3 9.8 106 120-245 121-231 (276)
192 PF05958 tRNA_U5-meth_tr: tRNA 98.3 5.3E-06 1.1E-10 80.1 10.8 115 98-231 172-300 (352)
193 PF06080 DUF938: Protein of un 98.3 9.2E-06 2E-10 72.9 10.8 117 122-254 28-152 (204)
194 PF12147 Methyltransf_20: Puta 98.2 2.6E-05 5.7E-10 73.4 13.4 123 109-251 125-256 (311)
195 KOG2730 Methylase [General fun 98.2 4.4E-06 9.6E-11 75.7 7.9 100 101-220 74-175 (263)
196 PLN02232 ubiquinone biosynthes 98.2 3.7E-06 8.1E-11 72.0 7.0 77 163-245 1-82 (160)
197 KOG2361 Predicted methyltransf 98.2 2.3E-06 4.9E-11 78.4 5.6 105 122-245 74-184 (264)
198 PF05891 Methyltransf_PK: AdoM 98.2 4.6E-06 1E-10 75.4 7.5 113 119-255 55-174 (218)
199 PRK10742 putative methyltransf 98.2 1.3E-05 2.9E-10 73.9 9.8 89 108-219 75-173 (250)
200 KOG3420 Predicted RNA methylas 98.1 1.1E-05 2.5E-10 69.0 8.6 110 100-234 25-143 (185)
201 PF03291 Pox_MCEL: mRNA cappin 98.1 1.3E-05 2.8E-10 77.0 10.0 107 119-243 62-185 (331)
202 COG4262 Predicted spermidine s 98.1 3.4E-05 7.3E-10 74.6 12.4 105 119-244 289-407 (508)
203 KOG3010 Methyltransferase [Gen 98.1 4.3E-06 9.3E-11 76.6 5.9 98 122-243 36-136 (261)
204 COG4976 Predicted methyltransf 98.1 7.9E-06 1.7E-10 74.6 7.2 144 120-294 126-286 (287)
205 PF02005 TRM: N2,N2-dimethylgu 98.1 1.7E-05 3.6E-10 77.4 9.2 104 121-245 51-155 (377)
206 KOG1500 Protein arginine N-met 98.1 1.6E-05 3.4E-10 76.2 8.4 98 118-241 176-279 (517)
207 COG0030 KsgA Dimethyladenosine 98.0 6.7E-05 1.5E-09 69.7 11.9 92 101-219 12-104 (259)
208 PRK04148 hypothetical protein; 98.0 8.6E-05 1.9E-09 62.6 10.9 98 108-236 5-103 (134)
209 PRK11783 rlmL 23S rRNA m(2)G24 98.0 5.8E-05 1.3E-09 79.1 12.2 99 102-219 172-312 (702)
210 PF05711 TylF: Macrocin-O-meth 98.0 1.9E-05 4.1E-10 72.9 7.4 149 103-284 54-238 (248)
211 KOG0820 Ribosomal RNA adenine 98.0 4.1E-05 8.9E-10 71.4 9.3 76 118-219 57-132 (315)
212 KOG1541 Predicted protein carb 97.9 2.4E-05 5.3E-10 71.1 7.1 95 120-243 51-159 (270)
213 PF04816 DUF633: Family of unk 97.9 7.5E-05 1.6E-09 67.1 10.3 97 123-241 1-98 (205)
214 PF02384 N6_Mtase: N-6 DNA Met 97.9 6.7E-05 1.5E-09 70.4 10.2 123 100-241 27-180 (311)
215 KOG1122 tRNA and rRNA cytosine 97.9 4.9E-05 1.1E-09 74.5 8.9 110 116-245 238-372 (460)
216 PF06962 rRNA_methylase: Putat 97.9 7E-05 1.5E-09 63.5 8.7 110 161-281 1-122 (140)
217 KOG1709 Guanidinoacetate methy 97.9 0.00015 3.3E-09 65.8 11.0 107 118-247 100-209 (271)
218 KOG2187 tRNA uracil-5-methyltr 97.8 8.9E-05 1.9E-09 74.2 9.9 124 98-241 358-487 (534)
219 COG0116 Predicted N6-adenine-s 97.8 0.00016 3.5E-09 70.4 10.6 77 161-243 256-343 (381)
220 PF01861 DUF43: Protein of unk 97.8 0.0028 6E-08 58.4 17.8 99 118-239 43-143 (243)
221 TIGR00478 tly hemolysin TlyA f 97.8 7.7E-05 1.7E-09 68.1 7.4 93 119-242 75-169 (228)
222 TIGR01444 fkbM_fam methyltrans 97.7 0.00012 2.5E-09 60.5 7.5 59 122-197 1-59 (143)
223 PRK10611 chemotaxis methyltran 97.7 0.00023 4.9E-09 67.2 10.0 105 120-244 116-262 (287)
224 TIGR00006 S-adenosyl-methyltra 97.7 0.00048 1.1E-08 65.5 11.8 85 118-221 19-103 (305)
225 TIGR02987 met_A_Alw26 type II 97.7 0.00028 6E-09 71.4 10.8 83 120-219 32-121 (524)
226 KOG1975 mRNA cap methyltransfe 97.7 0.0003 6.4E-09 67.2 10.1 105 119-241 117-234 (389)
227 PF00398 RrnaAD: Ribosomal RNA 97.7 0.00024 5.3E-09 65.6 9.5 132 100-255 11-145 (262)
228 PF01269 Fibrillarin: Fibrilla 97.7 0.00046 1E-08 62.8 10.7 107 116-243 70-177 (229)
229 PF08123 DOT1: Histone methyla 97.6 0.00046 1E-08 62.0 10.4 110 114-244 37-158 (205)
230 PF01728 FtsJ: FtsJ-like methy 97.6 0.00011 2.5E-09 63.5 5.9 98 119-243 23-138 (181)
231 PF13679 Methyltransf_32: Meth 97.6 0.00039 8.5E-09 58.3 8.7 74 108-196 10-92 (141)
232 TIGR03439 methyl_EasF probable 97.6 0.0011 2.5E-08 63.4 12.6 107 120-242 77-195 (319)
233 PF01739 CheR: CheR methyltran 97.5 0.00017 3.8E-09 64.3 5.8 105 120-245 32-176 (196)
234 PF05219 DREV: DREV methyltran 97.5 0.0011 2.4E-08 61.6 11.1 115 98-246 68-190 (265)
235 PF05971 Methyltransf_10: Prot 97.5 0.0005 1.1E-08 65.2 9.0 81 121-219 104-186 (299)
236 COG0293 FtsJ 23S rRNA methylas 97.5 0.00092 2E-08 60.1 10.2 101 118-245 44-160 (205)
237 KOG1562 Spermidine synthase [A 97.4 0.00069 1.5E-08 64.0 9.1 142 116-286 118-271 (337)
238 COG0500 SmtA SAM-dependent met 97.4 0.0095 2.1E-07 45.3 13.1 105 123-249 52-160 (257)
239 COG1867 TRM1 N2,N2-dimethylgua 97.3 0.0019 4.2E-08 62.6 10.9 122 99-243 32-153 (380)
240 COG3510 CmcI Cephalosporin hyd 97.3 0.0045 9.7E-08 55.4 11.8 142 104-269 54-208 (237)
241 COG4076 Predicted RNA methylas 97.3 0.00055 1.2E-08 61.1 5.9 97 122-245 35-136 (252)
242 COG0275 Predicted S-adenosylme 97.2 0.0048 1E-07 58.6 11.6 86 118-221 22-107 (314)
243 COG1352 CheR Methylase of chem 97.2 0.0021 4.6E-08 60.1 8.9 104 120-244 97-241 (268)
244 PF01795 Methyltransf_5: MraW 97.1 0.0019 4.1E-08 61.6 8.5 88 117-222 18-105 (310)
245 PF05148 Methyltransf_8: Hypot 97.1 0.0011 2.3E-08 60.0 6.4 125 100-279 54-180 (219)
246 COG2384 Predicted SAM-dependen 97.1 0.004 8.6E-08 56.6 9.6 95 119-235 16-111 (226)
247 PF09243 Rsm22: Mitochondrial 97.1 0.0026 5.6E-08 59.4 8.8 97 118-236 32-133 (274)
248 PRK01747 mnmC bifunctional tRN 97.0 0.0051 1.1E-07 63.9 10.5 103 121-243 59-205 (662)
249 KOG3178 Hydroxyindole-O-methyl 96.9 0.012 2.5E-07 56.8 11.9 97 120-248 178-280 (342)
250 KOG1253 tRNA methyltransferase 96.9 0.00082 1.8E-08 67.2 4.1 116 111-244 101-216 (525)
251 COG0286 HsdM Type I restrictio 96.9 0.026 5.7E-07 57.0 14.8 136 99-250 166-335 (489)
252 COG3897 Predicted methyltransf 96.8 0.0036 7.8E-08 56.1 6.8 97 117-242 77-176 (218)
253 KOG1269 SAM-dependent methyltr 96.8 0.002 4.3E-08 62.7 5.6 106 117-245 108-216 (364)
254 COG1063 Tdh Threonine dehydrog 96.8 0.012 2.7E-07 56.5 10.7 103 119-246 168-271 (350)
255 COG1189 Predicted rRNA methyla 96.7 0.014 3.1E-07 53.6 10.3 98 118-242 78-176 (245)
256 COG1889 NOP1 Fibrillarin-like 96.7 0.018 4E-07 51.9 10.5 103 116-242 73-178 (231)
257 KOG2352 Predicted spermine/spe 96.7 0.0034 7.5E-08 62.8 6.5 113 122-251 298-423 (482)
258 PF04445 SAM_MT: Putative SAM- 96.6 0.004 8.7E-08 57.1 5.7 75 122-219 78-160 (234)
259 KOG1596 Fibrillarin and relate 96.5 0.019 4.2E-07 53.1 9.2 151 116-291 153-306 (317)
260 PF04672 Methyltransf_19: S-ad 96.4 0.018 3.9E-07 53.8 9.2 121 113-247 62-193 (267)
261 PHA01634 hypothetical protein 96.4 0.0091 2E-07 50.3 6.1 74 119-219 28-101 (156)
262 COG1064 AdhP Zn-dependent alco 96.4 0.023 5E-07 54.9 9.7 99 116-246 163-261 (339)
263 KOG2198 tRNA cytosine-5-methyl 96.3 0.028 6.2E-07 54.6 10.1 166 65-246 96-298 (375)
264 KOG0024 Sorbitol dehydrogenase 96.2 0.034 7.4E-07 53.4 9.9 121 103-245 144-274 (354)
265 KOG3201 Uncharacterized conser 96.2 0.027 5.8E-07 49.4 8.2 108 117-243 27-139 (201)
266 KOG3115 Methyltransferase-like 96.0 0.019 4E-07 52.0 6.6 105 122-242 63-181 (249)
267 PF07091 FmrO: Ribosomal RNA m 96.0 0.025 5.4E-07 52.4 7.5 87 106-217 91-178 (251)
268 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.9 0.0098 2.1E-07 55.3 4.4 110 119-246 56-201 (256)
269 cd00315 Cyt_C5_DNA_methylase C 95.8 0.023 4.9E-07 53.0 6.6 93 140-245 3-112 (275)
270 PF03141 Methyltransf_29: Puta 95.8 0.0072 1.6E-07 60.8 3.4 98 121-245 119-220 (506)
271 COG5459 Predicted rRNA methyla 95.8 0.0073 1.6E-07 58.6 3.3 109 118-245 112-226 (484)
272 PRK11760 putative 23S rRNA C24 95.8 0.025 5.4E-07 54.8 6.8 87 118-237 210-296 (357)
273 KOG4589 Cell division protein 95.7 0.08 1.7E-06 47.4 9.2 103 119-250 69-188 (232)
274 PF07942 N2227: N2227-like pro 95.7 0.094 2E-06 49.2 10.1 100 120-241 57-199 (270)
275 PRK09880 L-idonate 5-dehydroge 95.7 0.078 1.7E-06 50.1 9.7 100 118-245 168-267 (343)
276 PF00107 ADH_zinc_N: Zinc-bind 95.5 0.072 1.6E-06 42.8 7.7 89 146-246 3-91 (130)
277 KOG1501 Arginine N-methyltrans 95.5 0.026 5.6E-07 56.2 5.8 59 122-197 69-127 (636)
278 cd08237 ribitol-5-phosphate_DH 95.5 0.11 2.3E-06 49.4 9.9 95 118-244 162-256 (341)
279 PRK09424 pntA NAD(P) transhydr 95.4 0.14 3.1E-06 52.1 11.0 110 118-249 163-290 (509)
280 COG4301 Uncharacterized conser 95.4 0.34 7.5E-06 45.2 12.3 113 113-243 72-192 (321)
281 KOG3045 Predicted RNA methylas 95.3 0.039 8.4E-07 51.7 6.1 95 108-245 169-265 (325)
282 KOG1227 Putative methyltransfe 95.2 0.019 4.1E-07 54.6 3.8 98 139-245 197-298 (351)
283 PF04378 RsmJ: Ribosomal RNA s 95.1 0.19 4E-06 46.6 10.0 90 146-241 67-161 (245)
284 PF00145 DNA_methylase: C-5 cy 95.1 0.054 1.2E-06 50.1 6.4 92 140-245 3-111 (335)
285 KOG2940 Predicted methyltransf 95.0 0.034 7.4E-07 51.3 4.6 97 121-243 74-173 (325)
286 PF01555 N6_N4_Mtase: DNA meth 94.8 0.028 6E-07 49.1 3.6 52 108-177 178-231 (231)
287 cd08281 liver_ADH_like1 Zinc-d 94.8 0.23 5E-06 47.5 10.2 102 116-244 188-290 (371)
288 COG0270 Dcm Site-specific DNA 94.7 0.081 1.7E-06 50.6 6.6 95 139-245 5-117 (328)
289 PRK11524 putative methyltransf 94.7 0.036 7.8E-07 51.8 4.1 56 108-181 195-252 (284)
290 cd08254 hydroxyacyl_CoA_DH 6-h 94.6 0.33 7.1E-06 44.8 10.4 100 117-243 163-262 (338)
291 cd08283 FDH_like_1 Glutathione 94.6 0.39 8.4E-06 46.3 11.3 109 114-244 179-306 (386)
292 TIGR03451 mycoS_dep_FDH mycoth 94.6 0.34 7.4E-06 46.0 10.6 104 116-245 173-277 (358)
293 PRK11524 putative methyltransf 94.6 0.069 1.5E-06 50.0 5.7 53 187-243 8-79 (284)
294 TIGR03201 dearomat_had 6-hydro 94.5 0.32 6.9E-06 46.1 10.1 108 116-246 163-274 (349)
295 PLN03154 putative allyl alcoho 94.4 0.57 1.2E-05 44.6 11.7 103 115-244 154-258 (348)
296 PF05430 Methyltransf_30: S-ad 94.4 0.065 1.4E-06 44.5 4.5 54 187-245 32-91 (124)
297 PLN02740 Alcohol dehydrogenase 94.1 0.5 1.1E-05 45.5 10.8 103 115-244 194-300 (381)
298 PRK13699 putative methylase; P 94.1 0.083 1.8E-06 48.1 5.0 51 188-242 2-70 (227)
299 PLN02827 Alcohol dehydrogenase 94.1 0.5 1.1E-05 45.6 10.7 103 116-244 190-295 (378)
300 COG4798 Predicted methyltransf 94.0 0.13 2.8E-06 46.4 5.8 105 117-244 46-166 (238)
301 cd08239 THR_DH_like L-threonin 93.8 0.63 1.4E-05 43.5 10.6 102 116-244 160-262 (339)
302 PF03721 UDPG_MGDP_dh_N: UDP-g 93.7 0.58 1.3E-05 41.2 9.6 95 146-250 9-126 (185)
303 PF10237 N6-adenineMlase: Prob 93.7 0.71 1.5E-05 40.1 9.8 112 99-243 3-122 (162)
304 KOG2671 Putative RNA methylase 93.6 0.13 2.9E-06 49.9 5.6 120 100-242 189-352 (421)
305 PRK13699 putative methylase; P 93.6 0.087 1.9E-06 47.9 4.2 56 109-182 151-208 (227)
306 KOG2793 Putative N2,N2-dimethy 93.4 0.41 8.9E-06 44.4 8.3 102 119-243 86-198 (248)
307 TIGR02818 adh_III_F_hyde S-(hy 93.3 1.1 2.3E-05 43.0 11.5 104 115-245 181-288 (368)
308 cd08230 glucose_DH Glucose deh 93.2 0.5 1.1E-05 44.8 8.9 97 118-245 171-270 (355)
309 TIGR00675 dcm DNA-methyltransf 93.2 0.28 6.1E-06 46.6 7.1 91 140-245 1-109 (315)
310 cd08295 double_bond_reductase_ 93.2 1.3 2.8E-05 41.5 11.6 102 115-243 147-250 (338)
311 TIGR03366 HpnZ_proposed putati 93.1 1.5 3.4E-05 40.1 11.8 101 118-246 119-220 (280)
312 cd08238 sorbose_phosphate_red 92.8 1 2.2E-05 43.8 10.7 104 117-242 173-286 (410)
313 cd08293 PTGR2 Prostaglandin re 92.8 1.4 2.9E-05 41.2 11.1 95 121-242 156-252 (345)
314 PRK10309 galactitol-1-phosphat 92.7 1 2.2E-05 42.3 10.2 104 116-245 157-261 (347)
315 cd08300 alcohol_DH_class_III c 92.7 1.6 3.5E-05 41.6 11.6 104 115-245 182-289 (368)
316 cd08294 leukotriene_B4_DH_like 92.6 1.6 3.4E-05 40.3 11.1 103 114-243 138-240 (329)
317 TIGR02822 adh_fam_2 zinc-bindi 92.6 1.3 2.7E-05 41.9 10.7 95 115-245 161-255 (329)
318 cd05188 MDR Medium chain reduc 92.6 1.2 2.6E-05 39.2 10.1 100 118-244 133-232 (271)
319 PF02254 TrkA_N: TrkA-N domain 92.5 0.71 1.5E-05 36.4 7.6 85 146-242 7-94 (116)
320 cd08285 NADP_ADH NADP(H)-depen 92.5 1.5 3.2E-05 41.3 11.0 106 116-246 163-268 (351)
321 KOG4058 Uncharacterized conser 92.1 0.81 1.8E-05 39.7 7.7 113 106-243 59-171 (199)
322 TIGR02825 B4_12hDH leukotriene 91.9 2.6 5.7E-05 39.1 11.9 102 114-243 133-236 (325)
323 KOG0022 Alcohol dehydrogenase, 91.9 1.2 2.7E-05 42.9 9.5 106 115-246 188-296 (375)
324 cd08301 alcohol_DH_plants Plan 91.8 2.2 4.8E-05 40.6 11.4 105 115-245 183-290 (369)
325 KOG2078 tRNA modification enzy 91.7 0.12 2.5E-06 51.4 2.5 61 139-200 252-313 (495)
326 TIGR00561 pntA NAD(P) transhyd 91.7 0.7 1.5E-05 47.1 8.2 101 119-241 163-281 (511)
327 TIGR01202 bchC 2-desacetyl-2-h 91.6 0.77 1.7E-05 42.9 7.9 88 119-244 144-231 (308)
328 cd08231 MDR_TM0436_like Hypoth 91.6 2.1 4.6E-05 40.4 10.9 102 119-243 177-279 (361)
329 COG0604 Qor NADPH:quinone redu 91.5 2.2 4.7E-05 40.8 10.9 105 115-245 138-242 (326)
330 KOG0822 Protein kinase inhibit 91.3 0.4 8.6E-06 49.0 5.8 101 121-243 369-477 (649)
331 cd08233 butanediol_DH_like (2R 91.2 2.4 5.3E-05 39.8 10.9 105 115-245 168-273 (351)
332 TIGR02819 fdhA_non_GSH formald 91.1 3.3 7.2E-05 40.4 11.9 108 115-245 181-300 (393)
333 COG0686 Ald Alanine dehydrogen 91.0 1.6 3.5E-05 42.1 9.2 94 121-241 169-265 (371)
334 cd08277 liver_alcohol_DH_like 90.9 2.9 6.2E-05 39.9 11.2 105 115-245 180-287 (365)
335 cd08291 ETR_like_1 2-enoyl thi 90.9 3.5 7.5E-05 38.3 11.5 85 146-243 157-241 (324)
336 TIGR00518 alaDH alanine dehydr 90.8 1.2 2.5E-05 43.5 8.5 97 119-242 166-265 (370)
337 PRK07502 cyclohexadienyl dehyd 90.4 1.8 3.9E-05 40.6 9.2 88 121-241 7-97 (307)
338 PLN02586 probable cinnamyl alc 90.1 3.8 8.2E-05 39.2 11.3 97 118-244 182-278 (360)
339 PRK09422 ethanol-active dehydr 90.1 4.3 9.3E-05 37.7 11.4 102 114-242 157-259 (338)
340 PF03141 Methyltransf_29: Puta 89.9 0.82 1.8E-05 46.3 6.6 70 208-293 425-506 (506)
341 cd05278 FDH_like Formaldehyde 89.9 2.9 6.2E-05 38.9 10.0 104 115-243 163-266 (347)
342 PRK08114 cystathionine beta-ly 89.8 5.8 0.00013 39.1 12.5 128 103-251 60-193 (395)
343 PRK05708 2-dehydropantoate 2-r 89.8 0.92 2E-05 42.8 6.6 98 122-242 4-102 (305)
344 cd08261 Zn_ADH7 Alcohol dehydr 89.8 3.8 8.2E-05 38.1 10.8 103 114-242 154-256 (337)
345 PF11968 DUF3321: Putative met 89.6 0.95 2.1E-05 41.2 6.2 61 160-239 73-139 (219)
346 PRK11064 wecC UDP-N-acetyl-D-m 89.5 7.4 0.00016 38.5 13.0 97 146-250 12-125 (415)
347 TIGR00027 mthyl_TIGR00027 meth 89.3 8.1 0.00017 35.8 12.4 108 120-245 82-198 (260)
348 COG2961 ComJ Protein involved 89.3 5.7 0.00012 37.2 11.1 147 103-285 73-229 (279)
349 PF05050 Methyltransf_21: Meth 89.3 1.1 2.4E-05 37.0 6.1 43 125-182 1-48 (167)
350 cd00401 AdoHcyase S-adenosyl-L 89.2 3 6.5E-05 41.5 10.0 89 118-244 200-289 (413)
351 COG1062 AdhC Zn-dependent alco 89.1 2.8 6.1E-05 40.8 9.3 104 116-245 182-286 (366)
352 PF01053 Cys_Met_Meta_PP: Cys/ 88.6 7.8 0.00017 38.1 12.4 123 103-246 53-180 (386)
353 PF12692 Methyltransf_17: S-ad 88.5 4.2 9.2E-05 35.2 9.0 100 122-247 31-137 (160)
354 cd08278 benzyl_alcohol_DH Benz 88.4 4.9 0.00011 38.3 10.6 103 115-243 182-284 (365)
355 cd05285 sorbitol_DH Sorbitol d 88.1 5.3 0.00011 37.4 10.5 104 114-243 157-264 (343)
356 COG1748 LYS9 Saccharopine dehy 88.1 3.1 6.8E-05 41.1 9.1 74 121-219 2-77 (389)
357 PF01210 NAD_Gly3P_dh_N: NAD-d 88.0 3.2 6.9E-05 35.2 8.2 87 146-242 8-101 (157)
358 PF02737 3HCDH_N: 3-hydroxyacy 88.0 3.8 8.3E-05 35.7 8.9 74 159-243 22-113 (180)
359 KOG1099 SAM-dependent methyltr 88.0 3.3 7.2E-05 38.4 8.6 98 119-243 41-162 (294)
360 KOG2360 Proliferation-associat 88.0 0.66 1.4E-05 45.6 4.3 98 102-219 196-293 (413)
361 PF03807 F420_oxidored: NADP o 88.0 2.4 5.3E-05 32.2 6.8 79 146-241 8-91 (96)
362 KOG2912 Predicted DNA methylas 88.0 0.82 1.8E-05 44.2 4.8 74 146-219 112-187 (419)
363 COG3129 Predicted SAM-dependen 87.7 1.8 3.9E-05 40.2 6.7 79 122-219 81-162 (292)
364 cd08260 Zn_ADH6 Alcohol dehydr 87.7 6.5 0.00014 36.7 10.9 100 116-242 162-262 (345)
365 PRK05808 3-hydroxybutyryl-CoA 87.7 6.3 0.00014 36.4 10.6 85 146-241 12-115 (282)
366 cd08286 FDH_like_ADH2 formalde 87.7 7.4 0.00016 36.3 11.2 102 116-242 163-264 (345)
367 cd08263 Zn_ADH10 Alcohol dehyd 87.1 5.4 0.00012 37.8 10.1 99 118-242 186-285 (367)
368 PRK05786 fabG 3-ketoacyl-(acyl 87.0 13 0.00027 32.5 11.7 82 119-219 4-90 (238)
369 PLN02353 probable UDP-glucose 86.9 19 0.00041 36.4 14.2 95 146-250 10-133 (473)
370 KOG1331 Predicted methyltransf 86.8 0.74 1.6E-05 43.6 3.8 103 105-243 34-142 (293)
371 cd05279 Zn_ADH1 Liver alcohol 86.7 8.5 0.00018 36.6 11.2 103 115-243 179-284 (365)
372 cd08266 Zn_ADH_like1 Alcohol d 86.6 7.7 0.00017 35.3 10.5 102 116-243 163-264 (342)
373 PRK06035 3-hydroxyacyl-CoA deh 86.6 4.7 0.0001 37.5 9.1 93 121-241 4-118 (291)
374 cd08296 CAD_like Cinnamyl alco 86.5 6.7 0.00015 36.6 10.2 99 116-243 160-258 (333)
375 PRK15182 Vi polysaccharide bio 86.4 7.8 0.00017 38.6 11.0 91 146-250 15-126 (425)
376 PRK07417 arogenate dehydrogena 86.3 3.9 8.5E-05 37.9 8.4 78 146-240 9-87 (279)
377 PLN02178 cinnamyl-alcohol dehy 86.1 5.9 0.00013 38.3 9.8 96 119-245 178-274 (375)
378 cd05213 NAD_bind_Glutamyl_tRNA 85.9 11 0.00025 35.6 11.5 97 118-246 176-274 (311)
379 PRK15057 UDP-glucose 6-dehydro 85.9 9.2 0.0002 37.6 11.1 95 146-250 9-123 (388)
380 TIGR00692 tdh L-threonine 3-de 85.5 12 0.00026 34.9 11.4 101 117-243 159-260 (340)
381 cd08243 quinone_oxidoreductase 85.5 14 0.00031 33.3 11.6 99 116-243 139-237 (320)
382 PRK10083 putative oxidoreducta 85.4 9.7 0.00021 35.3 10.7 102 115-242 156-257 (339)
383 PRK08293 3-hydroxybutyryl-CoA 85.4 9.6 0.00021 35.4 10.6 94 121-241 4-117 (287)
384 PLN02514 cinnamyl-alcohol dehy 85.2 13 0.00029 35.3 11.6 98 118-245 179-276 (357)
385 PF07015 VirC1: VirC1 protein; 84.9 1.6 3.5E-05 40.1 4.9 72 146-219 14-92 (231)
386 PRK09260 3-hydroxybutyryl-CoA 84.7 6.9 0.00015 36.3 9.2 87 146-242 10-115 (288)
387 COG4017 Uncharacterized protei 84.6 7.5 0.00016 35.2 8.8 96 117-255 42-138 (254)
388 cd08255 2-desacetyl-2-hydroxye 84.6 9.2 0.0002 34.3 9.8 95 115-242 93-188 (277)
389 PRK08507 prephenate dehydrogen 84.4 6.5 0.00014 36.2 8.9 77 146-241 9-88 (275)
390 PF02636 Methyltransf_28: Puta 84.1 2.1 4.6E-05 39.1 5.5 46 121-181 20-72 (252)
391 KOG2651 rRNA adenine N-6-methy 84.0 4.4 9.5E-05 40.2 7.7 55 107-178 141-195 (476)
392 TIGR01324 cysta_beta_ly_B cyst 84.0 24 0.00052 34.3 13.0 127 104-251 49-179 (377)
393 PRK06522 2-dehydropantoate 2-r 84.0 11 0.00024 34.6 10.3 93 122-242 2-98 (304)
394 PF02558 ApbA: Ketopantoate re 84.0 2.4 5.3E-05 34.9 5.3 87 146-242 7-99 (151)
395 PF06859 Bin3: Bicoid-interact 83.8 0.61 1.3E-05 38.1 1.5 41 210-250 1-50 (110)
396 PF10354 DUF2431: Domain of un 83.7 5.4 0.00012 34.6 7.5 95 146-243 8-124 (166)
397 cd08232 idonate-5-DH L-idonate 83.6 7.1 0.00015 36.2 8.9 95 119-242 165-260 (339)
398 PF11599 AviRa: RRNA methyltra 83.6 17 0.00038 33.4 10.9 108 119-244 51-214 (246)
399 PRK05613 O-acetylhomoserine am 83.4 27 0.0006 34.8 13.4 126 103-250 67-198 (437)
400 PRK09028 cystathionine beta-ly 83.4 25 0.00054 34.6 12.9 124 105-249 61-188 (394)
401 PRK14620 NAD(P)H-dependent gly 83.3 6.7 0.00015 37.0 8.7 88 146-242 9-104 (326)
402 PRK07810 O-succinylhomoserine 83.3 39 0.00085 33.1 14.3 126 103-249 68-197 (403)
403 PF01262 AlaDh_PNT_C: Alanine 83.3 2.1 4.6E-05 36.7 4.8 44 118-177 18-61 (168)
404 COG0677 WecC UDP-N-acetyl-D-ma 83.2 16 0.00035 36.4 11.3 97 146-250 18-134 (436)
405 PRK06130 3-hydroxybutyryl-CoA 83.1 11 0.00023 35.3 9.9 94 121-241 5-112 (311)
406 cd08234 threonine_DH_like L-th 83.0 12 0.00027 34.4 10.2 101 114-242 154-255 (334)
407 PF00072 Response_reg: Respons 82.9 18 0.00039 27.3 9.7 75 162-242 1-77 (112)
408 cd05284 arabinose_DH_like D-ar 82.8 15 0.00034 33.9 10.8 101 117-243 165-265 (340)
409 PRK08064 cystathionine beta-ly 82.7 41 0.00089 32.7 14.1 123 103-247 52-178 (390)
410 cd08265 Zn_ADH3 Alcohol dehydr 82.7 14 0.00029 35.5 10.7 104 116-243 200-306 (384)
411 PRK09496 trkA potassium transp 82.7 13 0.00028 36.4 10.6 97 120-241 231-328 (453)
412 KOG2352 Predicted spermine/spe 82.6 4.6 0.0001 40.9 7.5 97 122-243 51-160 (482)
413 cd08236 sugar_DH NAD(P)-depend 82.6 15 0.00032 34.1 10.7 103 114-243 154-257 (343)
414 cd08242 MDR_like Medium chain 82.6 14 0.0003 34.0 10.3 93 116-243 152-244 (319)
415 COG1568 Predicted methyltransf 82.6 6.4 0.00014 37.6 7.9 138 83-242 108-258 (354)
416 KOG0053 Cystathionine beta-lya 82.6 39 0.00084 33.7 13.7 124 105-252 77-207 (409)
417 PRK12921 2-dehydropantoate 2-r 82.5 6.1 0.00013 36.5 7.9 34 209-242 67-100 (305)
418 COG1004 Ugd Predicted UDP-gluc 82.3 37 0.00081 33.8 13.4 95 146-250 9-126 (414)
419 cd08297 CAD3 Cinnamyl alcohol 81.9 19 0.00042 33.3 11.1 103 116-243 162-264 (341)
420 PRK06940 short chain dehydroge 81.8 21 0.00046 32.5 11.1 72 146-219 11-85 (275)
421 PF01408 GFO_IDH_MocA: Oxidore 81.6 20 0.00044 28.0 9.7 71 156-244 22-93 (120)
422 PF02153 PDH: Prephenate dehyd 81.6 4.9 0.00011 36.9 6.9 66 159-241 11-76 (258)
423 cd05292 LDH_2 A subgroup of L- 81.5 22 0.00048 33.6 11.4 50 160-219 26-76 (308)
424 PRK08247 cystathionine gamma-s 81.3 34 0.00074 32.8 12.9 121 104-246 51-175 (366)
425 PLN02545 3-hydroxybutyryl-CoA 81.3 23 0.00049 32.9 11.3 85 146-241 13-116 (295)
426 PRK05939 hypothetical protein; 81.1 38 0.00082 33.2 13.2 121 104-246 46-170 (397)
427 PLN02256 arogenate dehydrogena 81.0 16 0.00034 34.7 10.2 84 121-239 37-122 (304)
428 PRK07671 cystathionine beta-ly 81.0 44 0.00096 32.4 13.6 123 103-247 48-174 (377)
429 PF06460 NSP13: Coronavirus NS 80.8 6.6 0.00014 37.0 7.3 92 121-243 63-168 (299)
430 PF11899 DUF3419: Protein of u 80.8 4.4 9.5E-05 39.9 6.5 61 182-247 272-337 (380)
431 cd08240 6_hydroxyhexanoate_dh_ 80.8 18 0.00039 33.8 10.6 98 119-243 175-273 (350)
432 cd08279 Zn_ADH_class_III Class 80.8 15 0.00032 34.9 10.0 103 115-243 178-281 (363)
433 PRK08306 dipicolinate synthase 80.5 19 0.00041 34.0 10.5 92 119-246 151-242 (296)
434 PRK08324 short chain dehydroge 80.4 17 0.00038 38.1 11.2 82 119-219 421-507 (681)
435 cd08282 PFDH_like Pseudomonas 80.4 30 0.00065 33.0 12.1 109 115-247 172-288 (375)
436 PRK05967 cystathionine beta-ly 80.4 42 0.00091 33.1 13.3 123 103-246 62-188 (395)
437 TIGR00936 ahcY adenosylhomocys 80.4 10 0.00022 37.8 8.9 88 118-243 193-281 (406)
438 cd08276 MDR7 Medium chain dehy 80.3 19 0.00041 32.8 10.4 99 117-242 158-257 (336)
439 PRK08248 O-acetylhomoserine am 80.2 54 0.0012 32.6 14.1 124 103-247 62-189 (431)
440 cd05286 QOR2 Quinone oxidoredu 80.2 24 0.00052 31.4 10.8 101 115-242 132-233 (320)
441 COG0863 DNA modification methy 80.2 2.2 4.9E-05 39.1 4.1 24 159-182 244-267 (302)
442 TIGR02356 adenyl_thiF thiazole 80.0 35 0.00076 30.1 11.6 80 118-219 19-120 (202)
443 PLN02702 L-idonate 5-dehydroge 79.9 21 0.00045 33.7 10.8 106 115-243 177-284 (364)
444 PRK07680 late competence prote 79.8 12 0.00025 34.5 8.7 80 146-241 9-93 (273)
445 PRK08339 short chain dehydroge 79.7 47 0.001 30.0 13.0 84 119-219 7-94 (263)
446 PRK00094 gpsA NAD(P)H-dependen 79.6 13 0.00029 34.5 9.2 86 146-241 10-102 (325)
447 PTZ00357 methyltransferase; Pr 79.6 7.2 0.00016 41.6 7.8 103 122-239 703-830 (1072)
448 PF08351 DUF1726: Domain of un 79.6 3.6 7.7E-05 32.3 4.5 71 208-278 9-89 (92)
449 PRK06234 methionine gamma-lyas 79.5 25 0.00055 34.3 11.5 125 104-249 63-193 (400)
450 PRK05703 flhF flagellar biosyn 79.5 70 0.0015 31.9 15.2 55 159-219 251-308 (424)
451 cd05293 LDH_1 A subgroup of L- 79.4 33 0.00072 32.6 11.9 75 121-219 4-80 (312)
452 COG2130 Putative NADP-dependen 79.3 18 0.0004 34.9 9.8 87 146-245 164-250 (340)
453 cd08292 ETR_like_2 2-enoyl thi 79.3 28 0.00061 31.7 11.1 101 115-242 135-236 (324)
454 cd08244 MDR_enoyl_red Possible 79.2 37 0.0008 30.9 11.9 103 114-242 137-239 (324)
455 PRK06176 cystathionine gamma-s 79.0 28 0.0006 33.9 11.5 123 103-247 48-174 (380)
456 PRK05476 S-adenosyl-L-homocyst 78.9 29 0.00063 34.7 11.7 88 118-243 210-298 (425)
457 PTZ00075 Adenosylhomocysteinas 78.9 11 0.00024 38.3 8.7 87 118-242 252-339 (476)
458 PRK12475 thiamine/molybdopteri 78.8 24 0.00052 34.0 10.8 79 119-219 23-125 (338)
459 cd05288 PGDH Prostaglandin deh 78.8 22 0.00049 32.5 10.4 99 117-242 143-242 (329)
460 PRK08861 cystathionine gamma-s 78.8 69 0.0015 31.4 14.3 125 104-249 52-180 (388)
461 cd05281 TDH Threonine dehydrog 78.7 21 0.00046 33.3 10.3 98 118-242 162-260 (341)
462 PRK06914 short chain dehydroge 78.6 50 0.0011 29.7 16.1 82 120-219 3-90 (280)
463 PRK06249 2-dehydropantoate 2-r 78.5 6.1 0.00013 37.2 6.6 34 209-242 71-104 (313)
464 COG0287 TyrA Prephenate dehydr 78.5 11 0.00024 35.4 8.2 89 121-241 4-95 (279)
465 cd08284 FDH_like_2 Glutathione 78.3 41 0.00088 31.1 12.0 101 116-243 164-265 (344)
466 PRK07530 3-hydroxybutyryl-CoA 78.2 24 0.00052 32.7 10.4 93 121-241 5-116 (292)
467 cd08269 Zn_ADH9 Alcohol dehydr 78.1 40 0.00086 30.5 11.7 103 115-243 125-228 (312)
468 PRK10669 putative cation:proto 78.1 12 0.00025 38.3 8.9 95 121-242 418-513 (558)
469 PRK15001 SAM-dependent 23S rib 77.8 19 0.00042 35.4 10.0 92 122-243 47-141 (378)
470 cd08256 Zn_ADH2 Alcohol dehydr 77.7 21 0.00046 33.4 10.0 104 116-244 171-274 (350)
471 PF02826 2-Hacid_dh_C: D-isome 77.6 11 0.00024 32.5 7.4 89 118-241 34-124 (178)
472 PLN02494 adenosylhomocysteinas 77.3 13 0.00028 37.8 8.7 88 118-242 252-339 (477)
473 cd08258 Zn_ADH4 Alcohol dehydr 77.3 28 0.00061 32.1 10.6 104 115-245 160-265 (306)
474 cd08250 Mgc45594_like Mgc45594 77.3 30 0.00066 31.7 10.8 100 116-242 136-235 (329)
475 PRK07066 3-hydroxybutyryl-CoA 77.2 21 0.00045 34.3 9.8 97 121-245 8-119 (321)
476 PRK12439 NAD(P)H-dependent gly 77.2 12 0.00027 35.7 8.3 94 121-241 8-108 (341)
477 PRK03562 glutathione-regulated 77.2 15 0.00032 38.4 9.5 95 121-242 401-496 (621)
478 PRK10754 quinone oxidoreductas 77.1 36 0.00078 31.3 11.2 100 116-242 137-237 (327)
479 PRK13512 coenzyme A disulfide 77.1 28 0.0006 34.3 11.0 114 111-246 139-265 (438)
480 cd08241 QOR1 Quinone oxidoredu 77.0 35 0.00076 30.5 10.9 102 116-243 136-237 (323)
481 KOG3987 Uncharacterized conser 77.0 0.6 1.3E-05 42.7 -0.7 114 99-246 89-209 (288)
482 cd08299 alcohol_DH_class_I_II_ 76.8 35 0.00076 32.6 11.4 105 115-246 186-294 (373)
483 PRK08045 cystathionine gamma-s 76.7 77 0.0017 30.9 14.1 125 104-249 51-179 (386)
484 cd08235 iditol_2_DH_like L-idi 76.6 26 0.00057 32.4 10.2 103 116-244 162-265 (343)
485 PRK05396 tdh L-threonine 3-deh 76.6 26 0.00057 32.6 10.2 100 119-244 163-263 (341)
486 PRK00066 ldh L-lactate dehydro 76.5 35 0.00076 32.4 11.2 77 119-219 5-82 (315)
487 cd08253 zeta_crystallin Zeta-c 76.4 40 0.00088 30.1 11.2 102 115-242 140-241 (325)
488 PTZ00354 alcohol dehydrogenase 76.4 32 0.00069 31.4 10.6 102 117-243 138-239 (334)
489 PRK08594 enoyl-(acyl carrier p 75.9 43 0.00092 30.1 11.1 84 119-218 6-95 (257)
490 PRK07582 cystathionine gamma-l 75.9 40 0.00086 32.5 11.5 118 104-246 50-171 (366)
491 PRK05225 ketol-acid reductoiso 75.9 18 0.00038 36.8 9.1 99 116-250 32-140 (487)
492 PRK08574 cystathionine gamma-s 75.8 73 0.0016 31.0 13.4 119 105-246 53-176 (385)
493 cd05276 p53_inducible_oxidored 75.6 33 0.00072 30.6 10.3 102 116-243 136-237 (323)
494 cd08290 ETR 2-enoyl thioester 75.5 26 0.00057 32.4 9.9 103 116-242 143-249 (341)
495 PRK07050 cystathionine beta-ly 75.4 73 0.0016 31.1 13.3 126 103-249 63-192 (394)
496 KOG1098 Putative SAM-dependent 75.0 7.4 0.00016 40.8 6.3 101 117-245 42-158 (780)
497 PF11899 DUF3419: Protein of u 75.0 6.6 0.00014 38.7 5.9 50 110-177 26-75 (380)
498 cd08298 CAD2 Cinnamyl alcohol 74.9 28 0.0006 32.1 9.8 95 114-244 162-256 (329)
499 PRK01438 murD UDP-N-acetylmura 74.7 19 0.00041 35.8 9.2 72 119-220 15-88 (480)
500 PRK05968 hypothetical protein; 74.6 81 0.0017 30.7 13.4 123 104-248 62-188 (389)
No 1
>PLN02476 O-methyltransferase
Probab=100.00 E-value=9.4e-48 Score=357.09 Aligned_cols=278 Identities=72% Similarity=1.098 Sum_probs=243.0
Q ss_pred CchhhhhhhhhhhhhcccccccccCcchhhHHhhcccccccccCccccccccccccccccccccccCCChhHHHHHHhcC
Q 022597 1 MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNV 80 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~ 80 (294)
|+..++-||-.|+..+...+.-..+.++.-+.+|..++-. ..-+...+...|.+.+|+|++++..+.++.+++|+.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Y~~~~~ 79 (278)
T PLN02476 1 MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLKFSRRLI-GNCSIAPADPVVVANDDKYGNKQVISLTPRLYDYVLSNV 79 (278)
T ss_pred CcchhhhhhhhhhhhhhhheeecCCccchhhhhHHHHHhh-cCCCCCCCCceEEecchhhcccCcccchHHHHHHHHhcC
Confidence 5667888999988776544443334444444333322111 112223345788999999999999999999999999988
Q ss_pred CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc
Q 022597 81 REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG 160 (294)
Q Consensus 81 ~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~ 160 (294)
++++.|+++++++..+..+.|.++|+++++|.++++..++++|||||||+ ||++++++.++++++
T Consensus 80 ~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~t---------------GySal~lA~al~~~G 144 (278)
T PLN02476 80 REPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYT---------------GYSSLAVALVLPESG 144 (278)
T ss_pred CCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCC---------------CHHHHHHHHhCCCCC
Confidence 88999999999999887778999999999999999999999999999999 999999999998889
Q ss_pred EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEE
Q 022597 161 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGII 240 (294)
Q Consensus 161 ~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~i 240 (294)
+|+++|.+++.++.|+++++++|+.++|+++.||+.+.++.+..++..++||+||+|++++.|.+||+.+.++|+|||+|
T Consensus 145 ~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvI 224 (278)
T PLN02476 145 CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVI 224 (278)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEE
Confidence 99999999999999999999999999999999999999988765544578999999999999999999999999999999
Q ss_pred EEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597 241 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294 (294)
Q Consensus 241 vid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~ 294 (294)
++||++|+|.|.++...++++.++|+||+.+.+||+++++++|+|||++|++||
T Consensus 225 V~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 225 VMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred EEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 999999999999998888889999999999999999999999999999999996
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=2.2e-43 Score=315.39 Aligned_cols=200 Identities=45% Similarity=0.784 Sum_probs=186.7
Q ss_pred CCChHHHHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC
Q 022597 80 VREPEILRQLREETAGMR-GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE 158 (294)
Q Consensus 80 ~~~~~~L~~~~~~~~~~~-~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~ 158 (294)
+.+++.|+++++.+.... .+.|.++|++|++|.++++..++++|||||||+ |||++++++++|+
T Consensus 5 ~~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~---------------GySal~la~~l~~ 69 (205)
T PF01596_consen 5 VREPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFT---------------GYSALWLAEALPE 69 (205)
T ss_dssp TCSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTT---------------SHHHHHHHHTSTT
T ss_pred cCCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEecccc---------------ccHHHHHHHhhcc
Confidence 568999999999998765 567889999999999999999999999999999 9999999999998
Q ss_pred CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCe
Q 022597 159 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGG 238 (294)
Q Consensus 159 ~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG 238 (294)
+++|+++|.+++..+.|+++++++|+.++|+++.||+.+.++.+..+++.++||+||+|++|..|..||+.+.++|+|||
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~gg 149 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGG 149 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEE
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCe
Confidence 99999999999999999999999999999999999999999998766556799999999999999999999999999999
Q ss_pred EEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597 239 IIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294 (294)
Q Consensus 239 ~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~ 294 (294)
+|++||++|+|.|.++...++.+.++++||+.+.+||+|+++++|+|||++|++||
T Consensus 150 vii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 150 VIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp EEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred EEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 99999999999999998888888899999999999999999999999999999997
No 3
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-43 Score=315.37 Aligned_cols=219 Identities=53% Similarity=0.891 Sum_probs=207.5
Q ss_pred ccccccCCChhHHHHHHhc---CCChHHHHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccc
Q 022597 61 SNKQVISVTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSS 135 (294)
Q Consensus 61 ~~~~~~~l~~~l~~Y~~~~---~~~~~~L~~~~~~~~~~--~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~ 135 (294)
..++.+..++.+++|+... .+|++.|+++++++..+ +++.|.++|++++++.+++++.+++++||||++|
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfT----- 84 (237)
T KOG1663|consen 10 PDKRLILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFT----- 84 (237)
T ss_pred cchhcccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEeccc-----
Confidence 3444677788899999876 67899999999999887 5889999999999999999999999999999999
Q ss_pred cccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEE
Q 022597 136 YSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 215 (294)
Q Consensus 136 ~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vf 215 (294)
|||++.+|.++|++|+|+++|+|++..+.+.+..+.+|+.++|++++|++.+.+.+++.+++.++|||+|
T Consensus 85 ----------GySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663|consen 85 ----------GYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred ----------CHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred EcCCccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCc-chHHHH---HHHHHhhhCCCeEEEEeecCCceEEE
Q 022597 216 VDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA-KTISIR---NFNKNLMEDERVSISMVPIGDGMTIC 291 (294)
Q Consensus 216 iD~~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~-~~~~ir---~f~~~l~~~~~~~~~~lp~gdGl~i~ 291 (294)
+|++|..|..|++.+.++||+||+|++||++|+|.|++|..+.+ ++..+| +||+.|+.||+++.+++|+|||+++|
T Consensus 155 vDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~ 234 (237)
T KOG1663|consen 155 VDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDGITIC 234 (237)
T ss_pred EccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCceeee
Confidence 99999999999999999999999999999999999999987666 889999 99999999999999999999999999
Q ss_pred EEC
Q 022597 292 QKR 294 (294)
Q Consensus 292 ~k~ 294 (294)
+|+
T Consensus 235 ~k~ 237 (237)
T KOG1663|consen 235 RKR 237 (237)
T ss_pred ccC
Confidence 986
No 4
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=4.2e-41 Score=308.32 Aligned_cols=216 Identities=39% Similarity=0.691 Sum_probs=195.2
Q ss_pred cccCCChhHHHHHHhc---CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEcccccccccccccc
Q 022597 64 QVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSI 140 (294)
Q Consensus 64 ~~~~l~~~l~~Y~~~~---~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~ 140 (294)
+..+.++.+++|+.++ .++++.|.++++++..+..+.|.++|+++++|..+++..++++|||||+++
T Consensus 21 ~~~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~---------- 90 (247)
T PLN02589 21 KSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYT---------- 90 (247)
T ss_pred ccccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChh----------
Confidence 3445678999999774 467899999999998887677899999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCC-CCceeEEEEcCC
Q 022597 141 LSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE-ASSYDFAFVDAE 219 (294)
Q Consensus 141 ~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~-~~~fD~vfiD~~ 219 (294)
|||+++++.+++++++|+++|.+++..+.|+++++++|+.++|+++.|++.+.++.+...+. .++||+||+|++
T Consensus 91 -----GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 91 -----GYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred -----hHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 99999999999889999999999999999999999999999999999999999998764331 368999999999
Q ss_pred ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCc-c-----hHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 022597 220 KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA-K-----TISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293 (294)
Q Consensus 220 ~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~-~-----~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k 293 (294)
|..|..||+.+.++|+|||+|++||++|+|.|.++...+. . ..++|+||+.+.+||+|+++++|+|||+++++|
T Consensus 166 K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k 245 (247)
T PLN02589 166 KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRR 245 (247)
T ss_pred HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEE
Confidence 9999999999999999999999999999999988853322 1 136889999999999999999999999999998
Q ss_pred C
Q 022597 294 R 294 (294)
Q Consensus 294 ~ 294 (294)
+
T Consensus 246 ~ 246 (247)
T PLN02589 246 I 246 (247)
T ss_pred e
Confidence 5
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=5.6e-39 Score=291.93 Aligned_cols=213 Identities=41% Similarity=0.675 Sum_probs=193.1
Q ss_pred CCChhHHHHHHhc---CCChHHHHHHHHHHHcCC--CCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccc
Q 022597 67 SVTPPLYDYILRN---VREPEILRQLREETAGMR--GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSIL 141 (294)
Q Consensus 67 ~l~~~l~~Y~~~~---~~~~~~L~~~~~~~~~~~--~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~ 141 (294)
+.++.+++|+.+. .++++.|.++++++..+. .+.|.++|+++++|..+++..++++|||+|||+
T Consensus 11 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~----------- 79 (234)
T PLN02781 11 LKSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFT----------- 79 (234)
T ss_pred CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcc-----------
Confidence 4567899999764 468999999999988662 367899999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc
Q 022597 142 SLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR 221 (294)
Q Consensus 142 ~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~ 221 (294)
|+++++++.+++++++|+++|.++++++.|+++++++|+.++++++.||+.+.++.+..+++.++||+||+|++++
T Consensus 80 ----G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~ 155 (234)
T PLN02781 80 ----GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKP 155 (234)
T ss_pred ----cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHH
Confidence 9999999999988899999999999999999999999999999999999999988876544457899999999999
Q ss_pred chHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCc-----chHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597 222 MYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA-----KTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294 (294)
Q Consensus 222 ~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~-----~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~ 294 (294)
.|..+++.+.++|+|||++++||++|+|.|.++....+ .+.++++||+.+.++|+++++++|+|||++|++|+
T Consensus 156 ~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 156 NYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 99999999999999999999999999999998764322 24689999999999999999999999999999985
No 6
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=6.1e-39 Score=288.56 Aligned_cols=207 Identities=39% Similarity=0.700 Sum_probs=185.8
Q ss_pred CCChhHHHHHHhcCC--ChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCC
Q 022597 67 SVTPPLYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLF 144 (294)
Q Consensus 67 ~l~~~l~~Y~~~~~~--~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~ 144 (294)
.+.+.+.+|+.+... .+..++++++.+..+ +.++ +.|+++++|.++++..++++|||||+++
T Consensus 7 ~~~~~l~~y~~~~~~~~~~~~~~~~~e~a~~~-~~pi-~~~e~g~~L~~L~~~~~~k~iLEiGT~~-------------- 70 (219)
T COG4122 7 NMDEDLYDYLEALIPGEPPALLAELEEFAREN-GVPI-IDPETGALLRLLARLSGPKRILEIGTAI-------------- 70 (219)
T ss_pred cchHHHHHHHHhhcccCCchHHHHHHHHhHhc-CCCC-CChhHHHHHHHHHHhcCCceEEEeeccc--------------
Confidence 466889999999853 567777777766654 3333 3499999999999999999999999999
Q ss_pred CcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cchhhhHHHHhhcCCCCceeEEEEcCCccch
Q 022597 145 SGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDFAFVDAEKRMY 223 (294)
Q Consensus 145 aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~ 223 (294)
|||++|||.++|+++++|+||+++++.+.|+++++++|+.++|.++. ||+.+.+... ..++||+||+|++|..|
T Consensus 71 -GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~----~~~~fDliFIDadK~~y 145 (219)
T COG4122 71 -GYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL----LDGSFDLVFIDADKADY 145 (219)
T ss_pred -CHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc----cCCCccEEEEeCChhhC
Confidence 99999999999988999999999999999999999999999999999 6999988762 16899999999999999
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchH--HHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597 224 QEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI--SIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294 (294)
Q Consensus 224 ~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~--~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~ 294 (294)
++||+.+.++|+|||+|++||++|+|.+.++...+..+. .++.|+..+.++|+++++++|+|||+++++|+
T Consensus 146 p~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 146 PEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred HHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCceEEEeec
Confidence 999999999999999999999999999999976666665 49999999999999999999999999999985
No 7
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=2.6e-23 Score=193.28 Aligned_cols=168 Identities=13% Similarity=0.189 Sum_probs=146.6
Q ss_pred ccccccCccccccccccccccccccccccCCChhHHHHHHhcCCC-hHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Q 022597 38 CKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVRE-PEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQ 116 (294)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~~~-~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~ 116 (294)
..+.+.++..+...|+.+|||+++..|.++++|.+ .|+|++..+ +..|+++|..+.++. ...++
T Consensus 5 ~~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~-~Yscayf~~~~~tL~eAQ~~k~~~~--------------~~kl~ 69 (283)
T COG2230 5 RRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSM-TYSCAYFEDPDMTLEEAQRAKLDLI--------------LEKLG 69 (283)
T ss_pred ccccccccccchhhhhhhHhhcchHHHHHhcCCCC-ceeeEEeCCCCCChHHHHHHHHHHH--------------HHhcC
Confidence 44556677788999999999999999999999998 999999655 458999998887653 33445
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
+.+++++||||||+ |..++.+|+.. +.+|+|+++|+++.+.+++.++..|++++++++..|..
T Consensus 70 L~~G~~lLDiGCGW---------------G~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r 132 (283)
T COG2230 70 LKPGMTLLDIGCGW---------------GGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR 132 (283)
T ss_pred CCCCCEEEEeCCCh---------------hHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccc
Confidence 55667999999999 98888888886 69999999999999999999999999999999999998
Q ss_pred hhHHHHhhcCCCCceeEEEE-----cCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 197 DSLKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfi-----D~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
+. .++||.|+. +.+++.|+.||+.+.+.|+|||.++++.+.
T Consensus 133 d~---------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 133 DF---------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred cc---------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence 76 567999964 556888999999999999999999999995
No 8
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.87 E-value=2.4e-22 Score=187.01 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=120.5
Q ss_pred ccccccccccccccccccccccCCChhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeE
Q 022597 45 QFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRC 123 (294)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~v 123 (294)
+.++++.|+++|||+.+..|.++|++.+ .|+|++ ..+++.|+++|+.+..+...++ .+.++.+|
T Consensus 2 ~~~~~~~~i~~hYDl~ndfy~l~Ld~~m-~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~--------------~l~~G~~v 66 (273)
T PF02353_consen 2 SKKQSRENISAHYDLGNDFYRLFLDPTM-KYSCAYFDEGDDTLEEAQERKLDLLCEKL--------------GLKPGDRV 66 (273)
T ss_dssp -S---HHHHHHHHTS-HHHHTTTS-TT----S----SSTT--HHHHHHHHHHHHHTTT--------------T--TT-EE
T ss_pred ccchHHHHHHHHcCCcHHHHHHhcCCCC-CCCCeecCCchhhHHHHHHHHHHHHHHHh--------------CCCCCCEE
Confidence 3567899999999999999999999998 999998 5568889999998766533333 34455699
Q ss_pred EEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHh
Q 022597 124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 203 (294)
Q Consensus 124 LEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~ 203 (294)
||||||+ |..++.+++.. +++|+++++|+++.+.+++.+++.|+.+++++..+|+.+.
T Consensus 67 LDiGcGw---------------G~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----- 124 (273)
T PF02353_consen 67 LDIGCGW---------------GGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----- 124 (273)
T ss_dssp EEES-TT---------------SHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred EEeCCCc---------------cHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-----
Confidence 9999999 99999999986 6899999999999999999999999999999999999875
Q ss_pred hcCCCCceeEEEE-----cCCccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597 204 LNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 249 (294)
Q Consensus 204 ~~~~~~~fD~vfi-----D~~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g 249 (294)
..+||.|+. +.+.+.|..+|+.+.++|+|||.++++.+....
T Consensus 125 ----~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 125 ----PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred ----CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 459999864 455678999999999999999999999886443
No 9
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.72 E-value=1.2e-17 Score=162.26 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=132.1
Q ss_pred ccccCccccccccccccccccccccccCCChhHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhC
Q 022597 40 FKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILG 119 (294)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~ 119 (294)
+...|+.++++.|+++|||+.+..|.+++++.+ .|.|.+-.+.+.|.+++..+... +...+.+.+
T Consensus 103 ~~~~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m-~ys~g~~~~~~~L~~Aq~~k~~~--------------l~~~l~l~~ 167 (383)
T PRK11705 103 LFNLQSKKRAWIVGKEHYDLGNDLFEAMLDPRM-QYSCGYWKDADTLEEAQEAKLDL--------------ICRKLQLKP 167 (383)
T ss_pred HhccCChhhHHHhhhhhcCCcHHHHHHhcCCCC-cccccccCCCCCHHHHHHHHHHH--------------HHHHhCCCC
Confidence 466899999999999999999999999999998 99999866667788887765432 223334556
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
+++|||||||+ |..+..++... +++|+++|+|+++++.|+++.+ ++ .+++..+|+.+.
T Consensus 168 g~rVLDIGcG~---------------G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l- 225 (383)
T PRK11705 168 GMRVLDIGCGW---------------GGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL- 225 (383)
T ss_pred CCEEEEeCCCc---------------cHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc-
Confidence 77999999999 99998888765 5799999999999999999884 33 388888887543
Q ss_pred HHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 200 KALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.++||.|+.- .+...+..+++.+.++|+|||.+++..+.
T Consensus 226 --------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 --------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred --------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 4689999753 23456789999999999999999998764
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.64 E-value=1.4e-15 Score=120.62 Aligned_cols=104 Identities=22% Similarity=0.391 Sum_probs=87.8
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||+|||+ |..++++++..+ +++|+++|+++++++.|+++++..+..++++++++|+ ..
T Consensus 1 p~~~vLDlGcG~---------------G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~ 63 (112)
T PF12847_consen 1 PGGRVLDLGCGT---------------GRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EF 63 (112)
T ss_dssp TTCEEEEETTTT---------------SHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HG
T ss_pred CCCEEEEEcCcC---------------CHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-cc
Confidence 356999999999 999999999554 7899999999999999999998888999999999999 32
Q ss_pred HHHHhhcCCCCceeEEEEcC-Cc------cchHHHHHHHHhcccCCeEEEEec
Q 022597 199 LKALILNGEASSYDFAFVDA-EK------RMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~-~~------~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.... .++||+|+... .. +...++++.+.+.|+|||+++++.
T Consensus 64 ~~~~-----~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 64 DPDF-----LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GTTT-----SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cccc-----CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222 46899999988 32 234677999999999999999874
No 11
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.58 E-value=5.4e-14 Score=124.22 Aligned_cols=111 Identities=22% Similarity=0.439 Sum_probs=97.3
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
..+.++.+|||+|||+ |..++.+++..+++++|+++|+++++++.|+++++.+|+.++++++.+|
T Consensus 36 l~~~~~~~vlDlG~Gt---------------G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d 100 (198)
T PRK00377 36 LRLRKGDMILDIGCGT---------------GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE 100 (198)
T ss_pred cCCCCcCEEEEeCCcC---------------CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 3455677999999999 9999999988766789999999999999999999999977789999999
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+.+.++.+ .++||+||++.....+..+++.+.+.|+|||.++++.+
T Consensus 101 ~~~~l~~~-----~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 101 APEILFTI-----NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred hhhhHhhc-----CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 98766543 46899999987777788999999999999999998765
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.58 E-value=9.8e-14 Score=128.40 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=94.7
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE
Q 022597 110 LLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 189 (294)
Q Consensus 110 lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~ 189 (294)
++..+....++++|||||||+ |..+.+++...| +.+++++|+|++.++.|++++...+..++++
T Consensus 57 m~~~l~~~~~~~~vL~IG~G~---------------G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~ 120 (262)
T PRK04457 57 MMGFLLFNPRPQHILQIGLGG---------------GSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFE 120 (262)
T ss_pred HHHHHhcCCCCCEEEEECCCH---------------hHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceE
Confidence 334444445678999999999 999999998876 7899999999999999999987666667899
Q ss_pred EEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597 190 IKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid 243 (294)
++.+|+.+.++.. .++||+||+|.... ...++++.+.+.|+|||++++.
T Consensus 121 v~~~Da~~~l~~~-----~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 121 VIEADGAEYIAVH-----RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEECCHHHHHHhC-----CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 9999999887754 46899999997432 2379999999999999999985
No 13
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.56 E-value=9.4e-14 Score=111.33 Aligned_cols=107 Identities=25% Similarity=0.409 Sum_probs=91.4
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
.+.+.++|||+|||+ |..+..+++..+ +++|+++|+++.+++.++++++..++. +++++.+|+
T Consensus 16 ~~~~~~~vldlG~G~---------------G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~ 78 (124)
T TIGR02469 16 RLRPGDVLWDIGAGS---------------GSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDA 78 (124)
T ss_pred CCCCCCEEEEeCCCC---------------CHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccc
Confidence 344567999999999 999999999876 489999999999999999999998876 589999987
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.+.++.. .++||.|+++.....+.++++.+.+.|+|||.+++.-
T Consensus 79 ~~~~~~~-----~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 79 PEALEDS-----LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cccChhh-----cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 6543332 4689999998877778899999999999999999864
No 14
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.56 E-value=1.8e-13 Score=120.30 Aligned_cols=120 Identities=25% Similarity=0.352 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
..++.-.+.-..+...++++++|||||| |..++.++.. .+.++++++|.+++.++..++|.++.
T Consensus 18 TK~EIRal~ls~L~~~~g~~l~DIGaGt---------------Gsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~f 81 (187)
T COG2242 18 TKEEIRALTLSKLRPRPGDRLWDIGAGT---------------GSITIEWALA-GPSGRVIAIERDEEALELIERNAARF 81 (187)
T ss_pred cHHHHHHHHHHhhCCCCCCEEEEeCCCc---------------cHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHh
Confidence 4455555555556777888999999999 9999999954 45999999999999999999999999
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
|+ ++++++.|++.+.++.+ .++|.||+... ...+..++.++..|+|||.+|+.-+.
T Consensus 82 g~-~n~~vv~g~Ap~~L~~~------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 82 GV-DNLEVVEGDAPEALPDL------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CC-CcEEEEeccchHhhcCC------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 95 57999999999988753 38999999998 88999999999999999999998773
No 15
>PLN03075 nicotianamine synthase; Provisional
Probab=99.55 E-value=3.5e-14 Score=133.47 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH-
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER- 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~- 181 (294)
+.+-++++|..+... ++++|+|||||.| |++++.++....++++++++|.|+++++.|++.++.
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldIGcGpg--------------pltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~ 172 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPL--------------PLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD 172 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEECCCCc--------------HHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc
Confidence 456677777777665 8899999999952 778888887776689999999999999999999965
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC----CccchHHHHHHHHhcccCCeEEEEec
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA----EKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~----~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.|+.++++|..+|+.+.... .++||+||+++ .++.+.++++.+.+.|+|||++++-.
T Consensus 173 ~gL~~rV~F~~~Da~~~~~~------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 173 PDLSKRMFFHTADVMDVTES------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCccCCcEEEECchhhcccc------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 89999999999999875322 36899999986 36889999999999999999999876
No 16
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.54 E-value=2.9e-13 Score=118.20 Aligned_cols=117 Identities=25% Similarity=0.322 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 183 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g 183 (294)
.+....++...+...++.+|||+|||+ |..++.+++..+ +++|+++|+++++++.|+++++..+
T Consensus 16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~---------------G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~ 79 (187)
T PRK08287 16 KEEVRALALSKLELHRAKHLIDVGAGT---------------GSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFG 79 (187)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCcC---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhC
Confidence 333444444455666778999999999 999999998765 6899999999999999999999988
Q ss_pred CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+. +++++.+|+... + .++||+||++.....+.++++.+.+.|+|||.+++..+
T Consensus 80 ~~-~i~~~~~d~~~~---~-----~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 80 CG-NIDIIPGEAPIE---L-----PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CC-CeEEEecCchhh---c-----CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 75 699999887421 2 36899999987766788899999999999999999765
No 17
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.54 E-value=2e-13 Score=119.73 Aligned_cols=101 Identities=23% Similarity=0.394 Sum_probs=87.7
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++++|||+|||+ |+.++.++...+ +++|+++|.++++++.+++++++.|+. +++++++|+.+
T Consensus 41 ~~~~~vLDiGcGt---------------G~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~ 103 (181)
T TIGR00138 41 LDGKKVIDIGSGA---------------GFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAED 103 (181)
T ss_pred cCCCeEEEecCCC---------------CccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhh
Confidence 4578999999999 999999987654 689999999999999999999999986 59999999977
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
... .++||+|++++ ...+..+++.+.++|+|||.+++.
T Consensus 104 ~~~-------~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 104 FQH-------EEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccc-------cCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 411 47899999987 567888999999999999999864
No 18
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.54 E-value=1e-13 Score=123.99 Aligned_cols=116 Identities=22% Similarity=0.404 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
..|.....+..++.+.++.+|||||||+ |+.+..++...+++++|+++|+++++++.|++++++.
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~Gs---------------G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~ 125 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGS---------------GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL 125 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCc---------------cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 4555555555666777889999999999 9999999998776789999999999999999999999
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
|+ ++++++++|+.+.++. ..+||+|++++..... .+.+.+.|+|||.+++.
T Consensus 126 g~-~~v~~~~~d~~~~~~~------~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 126 GL-DNVIVIVGDGTQGWEP------LAPYDRIYVTAAGPKI---PEALIDQLKEGGILVMP 176 (215)
T ss_pred CC-CCeEEEECCcccCCcc------cCCCCEEEEcCCcccc---cHHHHHhcCcCcEEEEE
Confidence 98 4699999998764322 3689999999765444 34577889999999885
No 19
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=1.7e-13 Score=121.92 Aligned_cols=117 Identities=22% Similarity=0.300 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597 105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 184 (294)
Q Consensus 105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl 184 (294)
|.....+..++...++.+|||+|||+ |+.+..++...++.++|+++|+++++++.|+++++..|+
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~Gs---------------G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~ 122 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGS---------------GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY 122 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCc---------------cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 33333333344455667999999999 999999999887678999999999999999999999998
Q ss_pred CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.++++++.+|+.+.++. .++||.|+++...... .+.+.+.|+|||.+++...
T Consensus 123 ~~~v~~~~~d~~~~~~~------~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 123 WGVVEVYHGDGKRGLEK------HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCcEEEEECCcccCCcc------CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEEEc
Confidence 88899999998764432 4689999999764433 3567889999999998643
No 20
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=2e-13 Score=122.30 Aligned_cols=118 Identities=24% Similarity=0.351 Sum_probs=97.6
Q ss_pred CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180 (294)
Q Consensus 101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~ 180 (294)
....|.....+...+.+.++.+|||||||+ |+.+..++...+++++|+++|+++++++.|+++++
T Consensus 58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~Gs---------------G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~ 122 (212)
T PRK13942 58 TISAIHMVAIMCELLDLKEGMKVLEIGTGS---------------GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK 122 (212)
T ss_pred EeCcHHHHHHHHHHcCCCCcCEEEEECCcc---------------cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 346777767777777788889999999999 99999999987767899999999999999999999
Q ss_pred HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
..|+. +++++++|+.+.... .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 123 ~~g~~-~v~~~~gd~~~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 123 KLGYD-NVEVIVGDGTLGYEE------NAPYDRIYVTAAGPDI---PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred HcCCC-CeEEEECCcccCCCc------CCCcCEEEECCCcccc---hHHHHHhhCCCcEEEEE
Confidence 99875 699999998654321 4789999998765443 34567789999999885
No 21
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.50 E-value=5.7e-13 Score=117.28 Aligned_cols=121 Identities=23% Similarity=0.366 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
...++...++...+...++.+|||+|||+ |..++.++...+ +++|+++|+++++++.+++++++
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~---------------G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGT---------------GTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCC---------------CHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH
Confidence 45566666666666777778999999999 999999987654 68999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.++. +++++.+|+.+.+..+ ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus 87 ~~~~-~v~~~~~d~~~~~~~~-----~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 87 FGVK-NVEVIEGSAPECLAQL-----APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred hCCC-CeEEEECchHHHHhhC-----CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 9885 6999999997655443 345788888764 4567899999999999999998865
No 22
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.49 E-value=3.2e-13 Score=116.76 Aligned_cols=110 Identities=22% Similarity=0.360 Sum_probs=90.4
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcE
Q 022597 109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188 (294)
Q Consensus 109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v 188 (294)
++|...+...+.++|||+|||+ |..++.+++..+ ..+|+++|+++++++.++++++.+++.+ +
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~---------------G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v 83 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGS---------------GVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-V 83 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTT---------------SHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-E
T ss_pred HHHHHHHhhccCCeEEEecCCh---------------HHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-c
Confidence 3555555555888999999999 999999999776 6689999999999999999999999987 9
Q ss_pred EEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEE
Q 022597 189 KIKHGLAADSLKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+++.+|..+.++ .++||+|+.+++. ....++++.+.+.|+|||.+++
T Consensus 84 ~~~~~d~~~~~~-------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 84 EVVQSDLFEALP-------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp EEEESSTTTTCC-------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccc-------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 999999876532 4799999999762 1367889999999999998854
No 23
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.48 E-value=4.6e-13 Score=118.29 Aligned_cols=100 Identities=19% Similarity=0.348 Sum_probs=87.8
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
+.+|||+|||+ |..++.++...+ +++|+++|.++++++.|+++.+..++.+ ++++++|+.+..
T Consensus 46 g~~VLDiGcGt---------------G~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~ 108 (187)
T PRK00107 46 GERVLDVGSGA---------------GFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFG 108 (187)
T ss_pred CCeEEEEcCCC---------------CHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCC
Confidence 67999999999 999999998765 7899999999999999999999999875 999999997642
Q ss_pred HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
. .++||+|+++. ...+..+++.+.+.|+|||.+++-.
T Consensus 109 ~-------~~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 109 Q-------EEKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred C-------CCCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 1 36899999986 3567899999999999999998763
No 24
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.47 E-value=4.5e-13 Score=107.22 Aligned_cols=101 Identities=23% Similarity=0.421 Sum_probs=86.2
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 200 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~ 200 (294)
.+|||+|||+ |..++.+++.. ..+++++|+|+..++.|+++++..++.++++++.+|..+..+
T Consensus 2 ~~vlD~~~G~---------------G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~ 64 (117)
T PF13659_consen 2 DRVLDPGCGS---------------GTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE 64 (117)
T ss_dssp EEEEEETSTT---------------CHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH
T ss_pred CEEEEcCcch---------------HHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh
Confidence 4899999999 99999999885 589999999999999999999999998899999999988764
Q ss_pred HHhhcCCCCceeEEEEcCCc-----------cchHHHHHHHHhcccCCeEEEE
Q 022597 201 ALILNGEASSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 201 ~l~~~~~~~~fD~vfiD~~~-----------~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.+ +.++||+|+.+++. ..+..+++.+.++|+|||++++
T Consensus 65 ~~----~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 65 PL----PDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TC----TTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred hc----cCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 33 26899999998762 2367899999999999999876
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.47 E-value=8.1e-13 Score=111.47 Aligned_cols=107 Identities=18% Similarity=0.325 Sum_probs=90.6
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
+..+|||+|||+ |..+..++..+.++++++++|+++++++.|++.+++.++. ++++.++|+.+
T Consensus 3 ~~~~iLDlGcG~---------------G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~- 65 (152)
T PF13847_consen 3 SNKKILDLGCGT---------------GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED- 65 (152)
T ss_dssp TTSEEEEET-TT---------------SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-
T ss_pred CCCEEEEecCcC---------------cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-
Confidence 456999999999 9999999976666899999999999999999999999998 89999999988
Q ss_pred HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
++... .++||+|+.... ..+....++.+.++|++||++++.+..
T Consensus 66 l~~~~----~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 66 LPQEL----EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GCGCS----STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccc----CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 43210 278999998864 344568899999999999999988775
No 26
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=4.2e-13 Score=122.91 Aligned_cols=119 Identities=18% Similarity=0.288 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
+.|..+.++.+.+.+.++.+|+|.|+|+ |..+.+|+.+..+.|+|++.|..+++++.|++|++.+
T Consensus 78 IyPKD~~~I~~~~gi~pg~rVlEAGtGS---------------G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 78 IYPKDAGYIVARLGISPGSRVLEAGTGS---------------GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF 142 (256)
T ss_pred ecCCCHHHHHHHcCCCCCCEEEEcccCc---------------hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh
Confidence 3444455677778889999999999999 9999999999988899999999999999999999999
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
|+.+++++..+|..+... ...||.||+|.+ +.+++++.+...|+|||.+++-.-
T Consensus 143 ~l~d~v~~~~~Dv~~~~~-------~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 143 GLGDRVTLKLGDVREGID-------EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred ccccceEEEecccccccc-------ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 999999999999987654 458999999985 447899999999999999987644
No 27
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.46 E-value=4e-13 Score=119.47 Aligned_cols=122 Identities=19% Similarity=0.268 Sum_probs=97.5
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY 179 (294)
Q Consensus 100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~ 179 (294)
.+.+++.+..+...+.. ++.+|||+|||+ |..+..++...+ +.+|+++|+++++++.|++++
T Consensus 23 ~~~~~~~~~~~~~~~~~--~~~~VLDiGcGt---------------G~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~ 84 (202)
T PRK00121 23 WPRLSPAPLDWAELFGN--DAPIHLEIGFGK---------------GEFLVEMAKANP-DINFIGIEVHEPGVGKALKKI 84 (202)
T ss_pred chhhcCCCCCHHHHcCC--CCCeEEEEccCC---------------CHHHHHHHHHCC-CccEEEEEechHHHHHHHHHH
Confidence 34567777777777766 667999999999 999999998765 678999999999999999999
Q ss_pred HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc---c--------chHHHHHHHHhcccCCeEEEEe
Q 022597 180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---R--------MYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~---~--------~~~~~~~~~~~lLkpgG~ivid 243 (294)
+..++ ++++++++|+.+.++... ..++||.|++.... . .+..+++.+.+.|+|||++++.
T Consensus 85 ~~~~~-~~v~~~~~d~~~~l~~~~---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 85 EEEGL-TNLRLLCGDAVEVLLDMF---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHcCC-CCEEEEecCHHHHHHHHc---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 99887 469999999944444221 14689999875321 1 2578999999999999999875
No 28
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.45 E-value=9.3e-14 Score=110.37 Aligned_cols=102 Identities=30% Similarity=0.489 Sum_probs=53.1
Q ss_pred EEEccccccccccccccccCCCcHHHHHHHHHCCCCc--EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 124 LEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~--~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
||||++. |++++++++++++.+ +++++|..+. .+.+++.+++.++.++++++.++..+.++.
T Consensus 1 lEiG~~~---------------G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~ 64 (106)
T PF13578_consen 1 LEIGTYS---------------GYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPS 64 (106)
T ss_dssp -----------------------------------------EEEESS-------------GGG-BTEEEEES-THHHHHH
T ss_pred Ccccccc---------------ccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHH
Confidence 6999999 999999999987654 8999999996 555666777788888999999999999887
Q ss_pred HhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEecc
Q 022597 202 LILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 202 l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+. .++||++|+|+++ +.....++.+.+.|+|||+|++||+
T Consensus 65 ~~----~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 65 LP----DGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp HH----H--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred cC----CCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 74 3799999999874 5678889999999999999999985
No 29
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=6.3e-13 Score=121.57 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=94.4
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||||||| |-.++.+++..+ .++|+++|+|+.|++.|++..+..|..+ ++++++||.+.
T Consensus 51 ~g~~vLDva~GT---------------Gd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L 113 (238)
T COG2226 51 PGDKVLDVACGT---------------GDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL 113 (238)
T ss_pred CCCEEEEecCCc---------------cHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC
Confidence 567999999999 999999999988 8999999999999999999999999887 99999999765
Q ss_pred HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597 199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
. + ++.+||+|.+..+ -.+++..++.+.+.|||||.+++-+..-
T Consensus 114 P--f----~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 114 P--F----PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred C--C----CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 3 2 3789999988765 4578999999999999999999887753
No 30
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.45 E-value=5.6e-13 Score=121.51 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=80.5
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
..++.+|||+|||| |..+..+++..++.++|+++|+++++++.|++..+..+.. +|+++++|+.
T Consensus 45 ~~~g~~vLDv~~Gt---------------G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~ 108 (233)
T PF01209_consen 45 LRPGDRVLDVACGT---------------GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAE 108 (233)
T ss_dssp --S--EEEEET-TT---------------SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTT
T ss_pred CCCCCEEEEeCCCh---------------HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHH
Confidence 34556999999999 9999999998877899999999999999999999998876 7999999997
Q ss_pred hhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 197 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+..- ++++||.|++... -.+....++.+.+.|||||.+++-+.
T Consensus 109 ~lp~------~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 109 DLPF------PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp B--S-------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhcC------CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 6521 1689999998765 34578899999999999999988665
No 31
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.43 E-value=1.8e-12 Score=116.16 Aligned_cols=109 Identities=19% Similarity=0.341 Sum_probs=90.2
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
+...++++|||+|||+ |..+..++...+++++|+++|+++++++.|+++++..++ ++++++.+|
T Consensus 41 l~~~~~~~vLDiGcG~---------------G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d 104 (231)
T TIGR02752 41 MNVQAGTSALDVCCGT---------------ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGN 104 (231)
T ss_pred cCCCCCCEEEEeCCCc---------------CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEec
Confidence 3444567999999999 999999999877688999999999999999999988887 479999999
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+.+.. + +.++||+|++... ..++.++++.+.+.|+|||.+++.+.
T Consensus 105 ~~~~~--~----~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 105 AMELP--F----DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred hhcCC--C----CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 86532 1 1478999987643 45678899999999999999987543
No 32
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=4.5e-12 Score=125.01 Aligned_cols=157 Identities=23% Similarity=0.293 Sum_probs=115.6
Q ss_pred HHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC
Q 022597 107 QAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 186 (294)
Q Consensus 107 ~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~ 186 (294)
.++++..++...++.+|||+|||+ |..++.++...+..++|+++|+++++++.+++++++.|+.+
T Consensus 240 ~s~l~~~~l~~~~g~~VLDl~ag~---------------G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~ 304 (434)
T PRK14901 240 SAQLVAPLLDPQPGEVILDACAAP---------------GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS 304 (434)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCCC---------------chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe
Confidence 355566666667788999999999 99999999987767899999999999999999999999974
Q ss_pred cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcccCCeEEE
Q 022597 187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-------------------------~~~~~~~~~~lLkpgG~iv 241 (294)
++++.+|+.+...... ...++||.|++|++... ..++++.+.++|||||.++
T Consensus 305 -v~~~~~D~~~~~~~~~--~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv 381 (434)
T PRK14901 305 -IKILAADSRNLLELKP--QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV 381 (434)
T ss_pred -EEEEeCChhhcccccc--cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 9999999876532110 01368999999975210 3577888899999999999
Q ss_pred EecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEE-----Eeec---CCceEEEE
Q 022597 242 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS-----MVPI---GDGMTICQ 292 (294)
Q Consensus 242 id~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~-----~lp~---gdGl~i~~ 292 (294)
.......- .....-+..| +.++|+++.. +.|- +||+-+|+
T Consensus 382 ystcsi~~--------~Ene~~v~~~---l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~ 429 (434)
T PRK14901 382 YATCTLHP--------AENEAQIEQF---LARHPDWKLEPPKQKIWPHRQDGDGFFMAV 429 (434)
T ss_pred EEeCCCCh--------hhHHHHHHHH---HHhCCCcEecCCCCccCCCCCCCCcEEEEE
Confidence 87764322 1112233444 4567777644 4454 48888875
No 33
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=2.3e-12 Score=118.00 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=87.0
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||+|||+ |..+..++.. +.+|+++|+++++++.|+++.+..|+.++++++++|+.+.
T Consensus 44 ~~~~vLDiGcG~---------------G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 44 RPLRVLDAGGGE---------------GQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred CCCEEEEeCCCc---------------hHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 456999999999 9999999874 5799999999999999999999999988999999999875
Q ss_pred HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597 199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+.. .++||+|+.+.. ..+...+++.+.++|+|||++++-
T Consensus 106 ~~~~-----~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 106 AQHL-----ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hhhc-----CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 4322 578999997653 245678899999999999999864
No 34
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.42 E-value=1.6e-12 Score=119.50 Aligned_cols=122 Identities=22% Similarity=0.286 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
+-|....++.+...+.++.+|||.|+|+ |..+.++++++.+.|+|++.|.+++..+.|+++++..
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGS---------------G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~ 88 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGS---------------GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH 88 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TT---------------SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCc---------------HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc
Confidence 3444456677778889999999999999 9999999999988999999999999999999999999
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcc-cCCeEEEEec
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI-RVGGIIVIDN 244 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lL-kpgG~ivid~ 244 (294)
|+.++|++.++|..+... ..+....+|.||+|.+.+ .+.++.+.+.| ++||.+++-.
T Consensus 89 gl~~~v~~~~~Dv~~~g~---~~~~~~~~DavfLDlp~P--w~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 89 GLDDNVTVHHRDVCEEGF---DEELESDFDAVFLDLPDP--WEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp TCCTTEEEEES-GGCG-----STT-TTSEEEEEEESSSG--GGGHHHHHHHE-EEEEEEEEEE
T ss_pred CCCCCceeEecceecccc---cccccCcccEEEEeCCCH--HHHHHHHHHHHhcCCceEEEEC
Confidence 999999999999864321 011147899999998643 56778888999 8999998753
No 35
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.6e-12 Score=116.36 Aligned_cols=117 Identities=26% Similarity=0.421 Sum_probs=98.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178 (294)
Q Consensus 99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~ 178 (294)
.+....|.....|..++...++.+|||||||+ ||.+..+++.. ++|+++|+.++..+.|+++
T Consensus 52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGs---------------GY~aAvla~l~---~~V~siEr~~~L~~~A~~~ 113 (209)
T COG2518 52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGS---------------GYQAAVLARLV---GRVVSIERIEELAEQARRN 113 (209)
T ss_pred CceecCcHHHHHHHHHhCCCCCCeEEEECCCc---------------hHHHHHHHHHh---CeEEEEEEcHHHHHHHHHH
Confidence 45567787777777888888999999999999 99999999975 4999999999999999999
Q ss_pred HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
++..|+.+ |++++||...-.+. ..+||.|++.+.....++ .+.+.|++||.+++-
T Consensus 114 L~~lg~~n-V~v~~gDG~~G~~~------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P 168 (209)
T COG2518 114 LETLGYEN-VTVRHGDGSKGWPE------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP 168 (209)
T ss_pred HHHcCCCc-eEEEECCcccCCCC------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence 99999986 99999999765443 489999999886554433 457789999999875
No 36
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.40 E-value=4.4e-12 Score=118.62 Aligned_cols=118 Identities=17% Similarity=0.247 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHh-h---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQ-I---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178 (294)
Q Consensus 103 v~~~~~~lL~~l~~-~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~ 178 (294)
..|++..++...+. . .++.+|||+|||+ |..++.++...+ +.+|+++|+|+++++.|+++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~Gs---------------G~i~~~la~~~~-~~~v~avDis~~al~~A~~n 164 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGS---------------GCIAIACAYAFP-EAEVDAVDISPDALAVAEIN 164 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCch---------------hHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHH
Confidence 45667777766554 2 2457999999999 999999998775 68999999999999999999
Q ss_pred HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHHHHH
Q 022597 179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELL 230 (294)
Q Consensus 179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~~~~ 230 (294)
++.+|+.++++++.+|..+.++ .++||+|+.+++. ..|..+++.+
T Consensus 165 ~~~~~~~~~i~~~~~D~~~~~~-------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a 237 (284)
T TIGR03533 165 IERHGLEDRVTLIQSDLFAALP-------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEA 237 (284)
T ss_pred HHHcCCCCcEEEEECchhhccC-------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHH
Confidence 9999998889999999865431 3579999998641 1246678888
Q ss_pred HhcccCCeEEEEe
Q 022597 231 LQLIRVGGIIVID 243 (294)
Q Consensus 231 ~~lLkpgG~ivid 243 (294)
.+.|+|||.+++.
T Consensus 238 ~~~L~~gG~l~~e 250 (284)
T TIGR03533 238 ADHLNENGVLVVE 250 (284)
T ss_pred HHhcCCCCEEEEE
Confidence 8999999999875
No 37
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.40 E-value=2.1e-12 Score=118.54 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
..+-| +-+|+.++.....++|||+|||+ |..++.++...+ ..++++||+++++.+.|+++++.
T Consensus 28 ~~~~D-aiLL~~~~~~~~~~~IlDlGaG~---------------G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~l 90 (248)
T COG4123 28 RYGTD-AILLAAFAPVPKKGRILDLGAGN---------------GALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVAL 90 (248)
T ss_pred ccccH-HHHHHhhcccccCCeEEEecCCc---------------CHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHh
Confidence 34433 67889999888899999999999 999999998765 49999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----c----------------cchHHHHHHHHhcccCCeEE
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----K----------------RMYQEYFELLLQLIRVGGII 240 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~----------------~~~~~~~~~~~~lLkpgG~i 240 (294)
+++.++++++++|..+..+... ..+||+|+++++ . ....++++.+..+|||||.+
T Consensus 91 n~l~~ri~v~~~Di~~~~~~~~----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l 166 (248)
T COG4123 91 NPLEERIQVIEADIKEFLKALV----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRL 166 (248)
T ss_pred CcchhceeEehhhHHHhhhccc----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEE
Confidence 9999999999999988877652 457999999876 1 12578888889999999998
Q ss_pred EE
Q 022597 241 VI 242 (294)
Q Consensus 241 vi 242 (294)
.+
T Consensus 167 ~~ 168 (248)
T COG4123 167 AF 168 (248)
T ss_pred EE
Confidence 75
No 38
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.40 E-value=7.4e-12 Score=122.35 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=92.3
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEEEEcc
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGL 194 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~~~gd 194 (294)
...++++|||+|||+ |..++..+. +...+|+++|+|+.+++.|+++++.+|+. ++++++++|
T Consensus 217 ~~~~g~rVLDlfsgt---------------G~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D 279 (396)
T PRK15128 217 RYVENKRVLNCFSYT---------------GGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD 279 (396)
T ss_pred HhcCCCeEEEeccCC---------------CHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEcc
Confidence 445678999999999 988776554 33469999999999999999999999996 589999999
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+.+.++.+... .++||+||+|++. ..|.++++.+.++|+|||+++....
T Consensus 280 ~~~~l~~~~~~--~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 280 VFKLLRTYRDR--GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHHHhc--CCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99988765432 3589999999872 3578888889999999999997664
No 39
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.38 E-value=1e-11 Score=120.99 Aligned_cols=124 Identities=23% Similarity=0.312 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597 106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 185 (294)
Q Consensus 106 ~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~ 185 (294)
||-..-.++.....+++||++-||| |..++..|..- ..+||+||.|...++.|++|++.+|+.
T Consensus 204 DqR~~R~~l~~~~~GkrvLNlFsYT---------------GgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~ 266 (393)
T COG1092 204 DQRDNRRALGELAAGKRVLNLFSYT---------------GGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLD 266 (393)
T ss_pred HhHHHHHHHhhhccCCeEEEecccC---------------cHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCC
Confidence 3444445566666789999999999 98888877752 349999999999999999999999985
Q ss_pred -CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC------------ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597 186 -HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNVLWH 248 (294)
Q Consensus 186 -~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~------------~~~~~~~~~~~~~lLkpgG~ivid~vl~~ 248 (294)
.+++++.+|+.++++..... ..+||+||+|++ .++|......+.++|+|||++++.+...+
T Consensus 267 ~~~~~~i~~Dvf~~l~~~~~~--g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 267 GDRHRFIVGDVFKWLRKAERR--GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred ccceeeehhhHHHHHHHHHhc--CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 67899999999999887654 369999999987 24588888999999999999999887544
No 40
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.38 E-value=2.7e-12 Score=115.36 Aligned_cols=117 Identities=23% Similarity=0.377 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
...|..-..+..++.+.++.+|||||||+ ||.+..++....+.++|+++|.+++..+.|+++++.
T Consensus 55 is~P~~~a~~l~~L~l~pg~~VLeIGtGs---------------GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~ 119 (209)
T PF01135_consen 55 ISAPSMVARMLEALDLKPGDRVLEIGTGS---------------GYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR 119 (209)
T ss_dssp E--HHHHHHHHHHTTC-TT-EEEEES-TT---------------SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCC---------------cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH
Confidence 34565544455555577888999999999 999999999887778999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.|+. +|+++++|...-.+. .++||.|++.+..+..+ +.+.+.|++||.+|+-
T Consensus 120 ~~~~-nv~~~~gdg~~g~~~------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 120 LGID-NVEVVVGDGSEGWPE------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAP 171 (209)
T ss_dssp HTTH-SEEEEES-GGGTTGG------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred hccC-ceeEEEcchhhcccc------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEE
Confidence 9987 699999998765443 47899999998765443 3467789999999984
No 41
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.37 E-value=8.2e-12 Score=111.11 Aligned_cols=114 Identities=23% Similarity=0.334 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
...|.....+..++...++.+|||+|||+ |+.+..++... ++++++|.++++++.|++++++
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~Gs---------------G~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~ 122 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGS---------------GYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQ 122 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCc---------------cHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHH
Confidence 46777777777777777889999999999 99998887763 4899999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.|+.+ +++..+|+.+.++. .++||+|+++.....+ .+.+.+.|+|||.+++.
T Consensus 123 ~~~~~-v~~~~~d~~~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 123 LGLHN-VSVRHGDGWKGWPA------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred CCCCc-eEEEECCcccCCCc------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 98864 99999998653221 3689999999865444 45678899999999985
No 42
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=6.1e-12 Score=124.29 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
+....++++..++...++++|||+|||+ |..++.++...+++++|+++|+++++++.+++++++.
T Consensus 234 ~qd~~s~lv~~~l~~~~g~~VLDlgaG~---------------G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~ 298 (444)
T PRK14902 234 IQDESSMLVAPALDPKGGDTVLDACAAP---------------GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL 298 (444)
T ss_pred EEChHHHHHHHHhCCCCCCEEEEeCCCC---------------CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 3444566777777777888999999999 9999999998765789999999999999999999999
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCC
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVG 237 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpg 237 (294)
|+.+ ++++++|+.+....+ .++||+||+|++.. ...++++.+.++|+||
T Consensus 299 g~~~-v~~~~~D~~~~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 299 GLTN-IETKALDARKVHEKF-----AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred CCCe-EEEEeCCcccccchh-----cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9975 999999997654333 36899999997621 0245788889999999
Q ss_pred eEEEEeccc
Q 022597 238 GIIVIDNVL 246 (294)
Q Consensus 238 G~ivid~vl 246 (294)
|.++...+-
T Consensus 373 G~lvystcs 381 (444)
T PRK14902 373 GILVYSTCT 381 (444)
T ss_pred CEEEEEcCC
Confidence 999987663
No 43
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.36 E-value=8.1e-12 Score=115.34 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=86.5
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH--hCCCCcEEEEEcc
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHGL 194 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~--~gl~~~v~~~~gd 194 (294)
..++.+|||+|||| |..+..++...++.++|+++|+++++++.|+++... .+..++++++++|
T Consensus 71 ~~~~~~VLDlGcGt---------------G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d 135 (261)
T PLN02233 71 AKMGDRVLDLCCGS---------------GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGD 135 (261)
T ss_pred CCCCCEEEEECCcC---------------CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcc
Confidence 34556999999999 999998888766578999999999999999887642 2334579999999
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
+.+.. + ++++||+|++... ..+...+++.+.+.|||||.+++-+..
T Consensus 136 ~~~lp--~----~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 136 ATDLP--F----DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred cccCC--C----CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 86541 1 2578999987532 346788999999999999999887664
No 44
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=1.5e-11 Score=116.33 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHh-hh---CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQ-IL---GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178 (294)
Q Consensus 103 v~~~~~~lL~~l~~-~~---~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~ 178 (294)
..|++..++...+. .. ++.+|||+|||+ |..++.++...+ +.+|+++|+|+++++.|+++
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~Gs---------------G~iai~la~~~p-~~~V~avDis~~al~~A~~n 176 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGS---------------GCIAIACAYAFP-DAEVDAVDISPDALAVAEIN 176 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechh---------------hHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHH
Confidence 34566666666543 21 226899999999 999999998775 78999999999999999999
Q ss_pred HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHHHHH
Q 022597 179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELL 230 (294)
Q Consensus 179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~~~~ 230 (294)
++.+|+.++++++++|..+.++ .++||+|+.+++- ..|..+++.+
T Consensus 177 ~~~~~l~~~i~~~~~D~~~~l~-------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a 249 (307)
T PRK11805 177 IERHGLEDRVTLIESDLFAALP-------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEA 249 (307)
T ss_pred HHHhCCCCcEEEEECchhhhCC-------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHH
Confidence 9999998889999999865432 3579999988531 1256778888
Q ss_pred HhcccCCeEEEEe
Q 022597 231 LQLIRVGGIIVID 243 (294)
Q Consensus 231 ~~lLkpgG~ivid 243 (294)
.+.|+|||.+++.
T Consensus 250 ~~~L~pgG~l~~E 262 (307)
T PRK11805 250 PDYLTEDGVLVVE 262 (307)
T ss_pred HHhcCCCCEEEEE
Confidence 8999999999985
No 45
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.34 E-value=1.4e-11 Score=108.67 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=87.6
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
...++||||||+ |..+..++...| +..++++|+++++++.|++++++.++. +++++++|+.+.
T Consensus 16 ~~~~ilDiGcG~---------------G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~ 78 (194)
T TIGR00091 16 KAPLHLEIGCGK---------------GRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANEL 78 (194)
T ss_pred CCceEEEeCCCc---------------cHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHH
Confidence 445899999999 999999999876 789999999999999999999999886 799999999886
Q ss_pred HHHHhhcCCCCceeEEEEcCCcc-----------chHHHHHHHHhcccCCeEEEEe
Q 022597 199 LKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~~-----------~~~~~~~~~~~lLkpgG~ivid 243 (294)
+.... ..+++|.|+++.+.. .+..+++.+.+.|+|||.+++.
T Consensus 79 ~~~~~---~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 79 LDKFF---PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred HHhhC---CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 64432 135899999874311 1367999999999999999763
No 46
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.34 E-value=1.5e-11 Score=128.08 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=95.1
Q ss_pred HHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEE
Q 022597 112 AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKI 190 (294)
Q Consensus 112 ~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~ 190 (294)
..+....++++|||+|||| |..+++++.. ...+|+++|.|+.+++.|+++++.+|+. +++++
T Consensus 531 ~~~~~~~~g~rVLDlf~gt---------------G~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~ 593 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYT---------------GTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRL 593 (702)
T ss_pred HHHHHhcCCCeEEEcCCCC---------------CHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEE
Confidence 3345556788999999999 9999999875 2357999999999999999999999997 68999
Q ss_pred EEcchhhhHHHHhhcCCCCceeEEEEcCCc--------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597 191 KHGLAADSLKALILNGEASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------------~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+++|+.+.++.+ .++||+||+|++. +.|.++++.+.++|+|||++++...
T Consensus 594 i~~D~~~~l~~~-----~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 594 IQADCLAWLKEA-----REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred EEccHHHHHHHc-----CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999999887654 4689999999861 2477888899999999999998765
No 47
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=1.3e-11 Score=121.81 Aligned_cols=123 Identities=20% Similarity=0.310 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
++...++++..++...++.+|||+|||+ |..|+.++..++++++|+++|+++++++.+++++++.
T Consensus 221 ~Qd~~s~~~~~~l~~~~g~~VLD~cagp---------------Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~ 285 (431)
T PRK14903 221 VQGESSQIVPLLMELEPGLRVLDTCAAP---------------GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL 285 (431)
T ss_pred EECHHHHHHHHHhCCCCCCEEEEeCCCc---------------cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3444566777777778888999999999 9999999998876799999999999999999999999
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCC
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVG 237 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpg 237 (294)
|+. ++++.++|+.+..... .++||.|++|++.. .+.++++.+.++|+||
T Consensus 286 g~~-~v~~~~~Da~~l~~~~-----~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 286 KLS-SIEIKIADAERLTEYV-----QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred CCC-eEEEEECchhhhhhhh-----hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 986 4999999987643222 46899999997621 1356688889999999
Q ss_pred eEEEEeccc
Q 022597 238 GIIVIDNVL 246 (294)
Q Consensus 238 G~ivid~vl 246 (294)
|.++.....
T Consensus 360 G~LvYsTCs 368 (431)
T PRK14903 360 GILLYSTCT 368 (431)
T ss_pred CEEEEEECC
Confidence 999998774
No 48
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.34 E-value=3.6e-11 Score=107.28 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=87.7
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE
Q 022597 110 LLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 189 (294)
Q Consensus 110 lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~ 189 (294)
++.++.....+.+|||+|||+ |..++.++... ..+|+++|.+++.++.++++++.+|+. +++
T Consensus 44 l~~~l~~~~~~~~vLDl~~Gs---------------G~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~ 105 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGS---------------GALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NAR 105 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCc---------------cHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEE
Confidence 445554445667999999999 99998654432 469999999999999999999999975 699
Q ss_pred EEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHh--cccCCeEEEEecc
Q 022597 190 IKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQ--LIRVGGIIVIDNV 245 (294)
Q Consensus 190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~--lLkpgG~ivid~v 245 (294)
++.+|+.+.++.. .++||+||+|++ ...+.+.++.+.+ +|+|+|++++..-
T Consensus 106 ~~~~D~~~~l~~~-----~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 106 VVNTNALSFLAQP-----GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred EEEchHHHHHhhc-----CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 9999998766432 357999999998 3445666666654 4899999998643
No 49
>PRK00811 spermidine synthase; Provisional
Probab=99.34 E-value=3.6e-11 Score=112.45 Aligned_cols=105 Identities=21% Similarity=0.321 Sum_probs=86.1
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C--CCcEEEEEc
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V--SHKVKIKHG 193 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l--~~~v~~~~g 193 (294)
.++++||+||||+ |..+..+++. +...+|++||+|+++++.|++++...+ . .++++++.+
T Consensus 75 ~~p~~VL~iG~G~---------------G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~ 138 (283)
T PRK00811 75 PNPKRVLIIGGGD---------------GGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIG 138 (283)
T ss_pred CCCCEEEEEecCc---------------hHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEEC
Confidence 3578999999999 9998888864 335799999999999999999987643 2 568999999
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid 243 (294)
|+.+.++.. .++||+|++|...+ ...++++.+.+.|+|||++++.
T Consensus 139 Da~~~l~~~-----~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 139 DGIKFVAET-----ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred chHHHHhhC-----CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999887652 57899999986321 1368889999999999999864
No 50
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.34 E-value=5.4e-11 Score=106.72 Aligned_cols=157 Identities=23% Similarity=0.311 Sum_probs=121.5
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCc--HHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSG--YSSLAIALVL-PESGCLVACERDARSLEVAKKYY 179 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG--~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~ 179 (294)
-+|+.++++..|+.-.+++.++|+.++- | ..+++|+.+. ..+|++++|-.+++.....++.+
T Consensus 25 ~ep~~aEfISAlAAG~nAkliVe~~s~g---------------~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l 89 (218)
T PF07279_consen 25 KEPGVAEFISALAAGWNAKLIVEAWSSG---------------GAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKAL 89 (218)
T ss_pred CCCCHHHHHHHHhccccceEEEEEecCC---------------CchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHH
Confidence 3688999999999999999999997764 3 2455555544 35899999999999999999999
Q ss_pred HHhCCCCcEEEEEcchh-hhHHHHhhcCCCCceeEEEEcCCccchH-HHHHHHHhcccCCeEEEEecccCCCcccCcccC
Q 022597 180 ERAGVSHKVKIKHGLAA-DSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVIDNVLWHGKVADQMVN 257 (294)
Q Consensus 180 ~~~gl~~~v~~~~gda~-~~l~~l~~~~~~~~fD~vfiD~~~~~~~-~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~ 257 (294)
...|+.+.++|+.|+.. +.++.+ ...||+++|...++|. ++|+.+ ++=+.|.++|..|.+..+.- .
T Consensus 90 ~~~~~~~~vEfvvg~~~e~~~~~~------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~~-~---- 157 (218)
T PF07279_consen 90 GEAGLSDVVEFVVGEAPEEVMPGL------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRSTN-G---- 157 (218)
T ss_pred hhccccccceEEecCCHHHHHhhc------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCcC-C----
Confidence 99999988999999854 566665 6799999999988887 777764 33356677777887543210 0
Q ss_pred CcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 022597 258 DAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293 (294)
Q Consensus 258 ~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k 293 (294)
-.+...+...+.+.+++||||.||.|++-
T Consensus 158 -------~~w~~~~~~~r~Vrsv~LPIG~GleVt~i 186 (218)
T PF07279_consen 158 -------FSWRSVLRGRRVVRSVFLPIGKGLEVTRI 186 (218)
T ss_pred -------ccHHHhcCCCCceeEEEeccCCCeEEEEE
Confidence 13445566778899999999999999863
No 51
>PRK01581 speE spermidine synthase; Validated
Probab=99.34 E-value=2.5e-11 Score=117.02 Aligned_cols=107 Identities=16% Similarity=0.268 Sum_probs=85.0
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH-----HHhCC-CCcEE
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----ERAGV-SHKVK 189 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~-----~~~gl-~~~v~ 189 (294)
...++++||+||||+ |+....+++. ++..+|++||+|+++++.|+++. .+.++ .++++
T Consensus 147 ~h~~PkrVLIIGgGd---------------G~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~ 210 (374)
T PRK01581 147 KVIDPKRVLILGGGD---------------GLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVN 210 (374)
T ss_pred hCCCCCEEEEECCCH---------------HHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceE
Confidence 345778999999999 8877766663 44679999999999999999732 12222 47899
Q ss_pred EEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------ch-HHHHHHHHhcccCCeEEEEe
Q 022597 190 IKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MY-QEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~-~~~~~~~~~lLkpgG~ivid 243 (294)
++.+|+.+.++.. .++||+||+|...+ -| .++++.+.+.|+|||++++.
T Consensus 211 vvi~Da~~fL~~~-----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 211 VHVCDAKEFLSSP-----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEECcHHHHHHhc-----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999999988754 57899999996432 12 67999999999999999875
No 52
>PLN02244 tocopherol O-methyltransferase
Probab=99.33 E-value=1.5e-11 Score=117.64 Aligned_cols=106 Identities=19% Similarity=0.192 Sum_probs=89.1
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++.+|||||||+ |..+..++... +++|+++|+++.+++.|+++.+..|+.++++++.+|+.+
T Consensus 117 ~~~~~VLDiGCG~---------------G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 117 KRPKRIVDVGCGI---------------GGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred CCCCeEEEecCCC---------------CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 3567999999999 99999999876 579999999999999999999999998899999999876
Q ss_pred hHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 198 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.. + +.++||+|+.... ..+...+++.+.+.|||||.+++.+..
T Consensus 180 ~~--~----~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 180 QP--F----EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CC--C----CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 41 1 2578999987432 345678999999999999999986643
No 53
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.33 E-value=1.1e-11 Score=114.05 Aligned_cols=112 Identities=16% Similarity=0.305 Sum_probs=92.1
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
.+.++++|||+|||+ |..++.++....+.++|+++|+++++++.|+++.+..|+. +++++.+|.
T Consensus 74 ~~~~g~~VLDiG~G~---------------G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~ 137 (272)
T PRK11873 74 ELKPGETVLDLGSGG---------------GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEI 137 (272)
T ss_pred cCCCCCEEEEeCCCC---------------CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcch
Confidence 455778999999999 9988888887766789999999999999999999998885 799999987
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597 196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 249 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g 249 (294)
.+. + + ..++||+|+.+.. ..+....++.+.+.|+|||.+++.++...+
T Consensus 138 ~~l-~-~----~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 138 EAL-P-V----ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred hhC-C-C----CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 543 1 1 1468999987642 345678999999999999999998876544
No 54
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.33 E-value=2e-11 Score=111.62 Aligned_cols=105 Identities=13% Similarity=0.234 Sum_probs=86.9
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
++.+|||+|||+ |..+..+++.. .++++++++|+++++++.|+++++..+...+++++.+|+.+
T Consensus 56 ~~~~vLDlGcGt---------------G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~ 120 (247)
T PRK15451 56 PGTQVYDLGCSL---------------GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 120 (247)
T ss_pred CCCEEEEEcccC---------------CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh
Confidence 556999999999 99999888854 35789999999999999999999998888889999999865
Q ss_pred hHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 198 SLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.. ...+|+|++.. .......+++.+.+.|+|||.+++.+..
T Consensus 121 ~~--------~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 121 IA--------IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred CC--------CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 41 24689887642 2334578999999999999999987643
No 55
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.33 E-value=2.3e-11 Score=112.55 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
+.....++...++...++.+|||+|||+ |..++.++..++..++|+++|+++++++.+++++++.
T Consensus 55 ~qd~~s~~~~~~l~~~~g~~VLDl~ag~---------------G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~ 119 (264)
T TIGR00446 55 IQEASSMIPPLALEPDPPERVLDMAAAP---------------GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC 119 (264)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEECCCc---------------hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence 3334444455555666778999999999 9999999998876789999999999999999999999
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCC
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVG 237 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpg 237 (294)
|+. +++++++|+.+.... .++||.|++|++.. ...++++.+.++|+||
T Consensus 120 g~~-~v~~~~~D~~~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 120 GVL-NVAVTNFDGRVFGAA------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred CCC-cEEEecCCHHHhhhh------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 986 599999998754221 35699999997621 1345888888999999
Q ss_pred eEEEEeccc
Q 022597 238 GIIVIDNVL 246 (294)
Q Consensus 238 G~ivid~vl 246 (294)
|+++.....
T Consensus 193 G~lvYstcs 201 (264)
T TIGR00446 193 GVLVYSTCS 201 (264)
T ss_pred CEEEEEeCC
Confidence 999987653
No 56
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.32 E-value=4.4e-11 Score=117.68 Aligned_cols=122 Identities=19% Similarity=0.241 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597 106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 185 (294)
Q Consensus 106 ~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~ 185 (294)
..++++...+...++.+|||+|||+ |..++.++...+ +++|+++|+++++++.+++++++.|+.
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~---------------G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~ 288 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAP---------------GGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT 288 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCc---------------cHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3456666667777888999999999 999999999886 789999999999999999999999987
Q ss_pred CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcccCCeEE
Q 022597 186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGII 240 (294)
Q Consensus 186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-------------------------~~~~~~~~~~lLkpgG~i 240 (294)
.++++..+|........ ..++||.||+|++... ..++++.+.++|||||.+
T Consensus 289 ~~v~~~~~d~~~~~~~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~l 364 (426)
T TIGR00563 289 IKAETKDGDGRGPSQWA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTL 364 (426)
T ss_pred eEEEEeccccccccccc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 44555777765322100 1468999999965110 357888889999999999
Q ss_pred EEecccC
Q 022597 241 VIDNVLW 247 (294)
Q Consensus 241 vid~vl~ 247 (294)
++...-+
T Consensus 365 vystcs~ 371 (426)
T TIGR00563 365 VYATCSV 371 (426)
T ss_pred EEEeCCC
Confidence 9987743
No 57
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=5.2e-11 Score=117.23 Aligned_cols=120 Identities=23% Similarity=0.338 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 183 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g 183 (294)
+...+++...++...++.+|||+|||+ |..++.++...+ +++|+++|+++++++.+++++++.|
T Consensus 229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~---------------G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g 292 (427)
T PRK10901 229 QDAAAQLAATLLAPQNGERVLDACAAP---------------GGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLG 292 (427)
T ss_pred ECHHHHHHHHHcCCCCCCEEEEeCCCC---------------ChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 334455666677777888999999999 999999999875 4899999999999999999999998
Q ss_pred CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCCe
Q 022597 184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGG 238 (294)
Q Consensus 184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpgG 238 (294)
+. ++++.+|+.+..... ..++||.||+|++.. .+.++++.+.++|+|||
T Consensus 293 ~~--~~~~~~D~~~~~~~~----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG 366 (427)
T PRK10901 293 LK--ATVIVGDARDPAQWW----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGG 366 (427)
T ss_pred CC--eEEEEcCcccchhhc----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 85 789999987643211 146799999998621 02467888899999999
Q ss_pred EEEEecc
Q 022597 239 IIVIDNV 245 (294)
Q Consensus 239 ~ivid~v 245 (294)
.+++..+
T Consensus 367 ~lvystc 373 (427)
T PRK10901 367 TLLYATC 373 (427)
T ss_pred EEEEEeC
Confidence 9998766
No 58
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.32 E-value=9.1e-12 Score=111.06 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=87.5
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 200 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~ 200 (294)
++|||||||+ |..+..++...+ +++++++|+++++++.++++++..|+.++++++.+|+.+..
T Consensus 1 ~~vLDiGcG~---------------G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~- 63 (224)
T smart00828 1 KRVLDFGCGY---------------GSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP- 63 (224)
T ss_pred CeEEEECCCC---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-
Confidence 4799999999 999999998775 68999999999999999999999999999999999985431
Q ss_pred HHhhcCCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 201 ALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 201 ~l~~~~~~~~fD~vfiD~---~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
. .++||+|+... ...+...+|+.+.++|+|||.+++.++.
T Consensus 64 -~-----~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 64 -F-----PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred -C-----CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 1 36899998532 1345789999999999999999998774
No 59
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.30 E-value=5.4e-11 Score=107.73 Aligned_cols=105 Identities=8% Similarity=0.090 Sum_probs=87.1
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
+..+|||+|||+ |..+..++..++ ++++++++|+++++++.|+++++..+...+++++++|+.+
T Consensus 53 ~~~~iLDlGcG~---------------G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSR---------------GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH 117 (239)
T ss_pred CCCEEEEecCCC---------------CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence 556999999999 999999998763 4789999999999999999999988777789999999976
Q ss_pred hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.. ..++|+|++... ..+...+++.+.+.|+|||.+++.+..
T Consensus 118 ~~--------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 118 VE--------IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred CC--------CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 42 245888765432 334678999999999999999998764
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.29 E-value=3.8e-11 Score=104.14 Aligned_cols=109 Identities=12% Similarity=0.239 Sum_probs=87.7
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597 108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 187 (294)
Q Consensus 108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~ 187 (294)
+.+|...+...++++|||+|||+ |..+..++... .+|+++|+++++++.++++++..+. +
T Consensus 8 ~~~l~~~l~~~~~~~vLdlG~G~---------------G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~ 67 (179)
T TIGR00537 8 SLLLEANLRELKPDDVLEIGAGT---------------GLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--G 67 (179)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCh---------------hHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--c
Confidence 35666666677778999999999 99999988753 3899999999999999999998876 4
Q ss_pred EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc------------------------chHHHHHHHHhcccCCeEEEEe
Q 022597 188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~------------------------~~~~~~~~~~~lLkpgG~ivid 243 (294)
++++.+|..+.. .++||+|+.+++.. .+..+++.+.++|+|||.+++-
T Consensus 68 ~~~~~~d~~~~~--------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 68 LDVVMTDLFKGV--------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred eEEEEccccccc--------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 888999976532 35899999875410 1467888899999999998875
Q ss_pred c
Q 022597 244 N 244 (294)
Q Consensus 244 ~ 244 (294)
.
T Consensus 140 ~ 140 (179)
T TIGR00537 140 Q 140 (179)
T ss_pred E
Confidence 4
No 61
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.29 E-value=5.2e-11 Score=111.10 Aligned_cols=119 Identities=18% Similarity=0.320 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHhh---hCC-CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597 104 SPDQAQLLAMLVQI---LGA-QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY 179 (294)
Q Consensus 104 ~~~~~~lL~~l~~~---~~~-~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~ 179 (294)
.|++..++...... .++ .+|||+|||+ |..++.++...+ +.+|+++|+++++++.|++++
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~Gs---------------G~i~l~la~~~~-~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGS---------------GCIALALAYEFP-NAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccH---------------hHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHH
Confidence 45566666665432 222 6899999999 999999999875 689999999999999999999
Q ss_pred HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHHHHHH
Q 022597 180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLL 231 (294)
Q Consensus 180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~~~~~ 231 (294)
+..++.++++++.+|..+.++ ..+||+|+.+++. ..|..+++.+.
T Consensus 159 ~~~~~~~~v~~~~~d~~~~~~-------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~ 231 (284)
T TIGR00536 159 EKNQLEHRVEFIQSNLFEPLA-------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAP 231 (284)
T ss_pred HHcCCCCcEEEEECchhccCc-------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHH
Confidence 999998789999999865321 2479999987540 13667888888
Q ss_pred hcccCCeEEEEecc
Q 022597 232 QLIRVGGIIVIDNV 245 (294)
Q Consensus 232 ~lLkpgG~ivid~v 245 (294)
+.|+|||++++.--
T Consensus 232 ~~L~~gG~l~~e~g 245 (284)
T TIGR00536 232 DYLKPNGFLVCEIG 245 (284)
T ss_pred HhccCCCEEEEEEC
Confidence 99999999987643
No 62
>PLN02366 spermidine synthase
Probab=99.28 E-value=1.2e-10 Score=110.34 Aligned_cols=106 Identities=23% Similarity=0.365 Sum_probs=87.2
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C-CCcEEEEEcc
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGL 194 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l-~~~v~~~~gd 194 (294)
.++++||+||||. |.....+++. +...+|+.||+|++.++.|++++...+ + ++|++++.+|
T Consensus 90 ~~pkrVLiIGgG~---------------G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D 153 (308)
T PLN02366 90 PNPKKVLVVGGGD---------------GGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD 153 (308)
T ss_pred CCCCeEEEEcCCc---------------cHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence 4678999999999 9988888875 545789999999999999999987642 3 3589999999
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid 243 (294)
+.+.++... .++||+||+|...+ ...++++.+.+.|+|||+++..
T Consensus 154 a~~~l~~~~----~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 154 GVEFLKNAP----EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHHhhcc----CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 998876531 36899999997532 2568999999999999999764
No 63
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=3.2e-11 Score=119.31 Aligned_cols=121 Identities=18% Similarity=0.244 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
+......+...++...++++|||+|||+ |..++.++..++.+++|+++|+++++++.+++++++.
T Consensus 234 vqd~~s~l~~~~l~~~~g~~VLDlgaG~---------------G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 234 VQNPTQALACLLLNPQPGSTVLDLCAAP---------------GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred EeCHHHHHHHHhcCCCCCCEEEEECCCC---------------CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh
Confidence 3334445555566666778999999999 9999999988776789999999999999999999999
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCC
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVG 237 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpg 237 (294)
|+. +++++.+|+.+..+ .++||.||+|++.. ....++..+.+.|+||
T Consensus 299 g~~-~v~~~~~Da~~~~~-------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 299 GIT-IIETIEGDARSFSP-------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred CCC-eEEEEeCccccccc-------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 986 69999999876531 46899999996521 1235788889999999
Q ss_pred eEEEEeccc
Q 022597 238 GIIVIDNVL 246 (294)
Q Consensus 238 G~ivid~vl 246 (294)
|.+++....
T Consensus 371 G~lvystcs 379 (445)
T PRK14904 371 GVLVYATCS 379 (445)
T ss_pred cEEEEEeCC
Confidence 999998763
No 64
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.28 E-value=2.2e-10 Score=104.94 Aligned_cols=98 Identities=22% Similarity=0.323 Sum_probs=80.1
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++.+|||+|||+ |..++.++.. + ..+|+++|+|+.+++.|+++++.+++.+++++..++
T Consensus 118 ~~~~~VLDiGcGs---------------G~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--- 177 (250)
T PRK00517 118 LPGKTVLDVGCGS---------------GILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--- 177 (250)
T ss_pred CCCCEEEEeCCcH---------------HHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC---
Confidence 3567999999999 9988876653 2 346999999999999999999999886666554332
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.+||+|+.+........+++.+.+.|+|||.+++..+.
T Consensus 178 -----------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 178 -----------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred -----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 26999998876666788899999999999999998663
No 65
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.28 E-value=2.7e-11 Score=95.31 Aligned_cols=93 Identities=23% Similarity=0.341 Sum_probs=75.5
Q ss_pred EEEEccccccccccccccccCCCcHHHHHHHHHCCC--CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597 123 CIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 200 (294)
Q Consensus 123 vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~--~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~ 200 (294)
|||+|||+ |..+..++...+. ..+++++|+++++++.++++.+..+. +++++++|+.+. +
T Consensus 1 ILDlgcG~---------------G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~ 62 (101)
T PF13649_consen 1 ILDLGCGT---------------GRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-P 62 (101)
T ss_dssp -EEET-TT---------------SHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-H
T ss_pred CEEeecCC---------------cHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-c
Confidence 79999999 9999999998733 37999999999999999999998776 699999999874 3
Q ss_pred HHhhcCCCCceeEEEEc-C-----CccchHHHHHHHHhcccCCe
Q 022597 201 ALILNGEASSYDFAFVD-A-----EKRMYQEYFELLLQLIRVGG 238 (294)
Q Consensus 201 ~l~~~~~~~~fD~vfiD-~-----~~~~~~~~~~~~~~lLkpgG 238 (294)
.. .++||+|+.- . ++.....+++.+.++|+|||
T Consensus 63 ~~-----~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 63 FS-----DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp HH-----SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cc-----CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 33 5799999983 2 25567899999999999998
No 66
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.27 E-value=3.1e-11 Score=115.05 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=85.6
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
.+.+|||||||+ |..+..+++. +++|+++|.++++++.|+++.+..+...+++++++++.+.
T Consensus 131 ~g~~ILDIGCG~---------------G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l 192 (322)
T PLN02396 131 EGLKFIDIGCGG---------------GLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCEEEEeeCCC---------------CHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence 456999999999 9999888762 6799999999999999999887766666899999998664
Q ss_pred HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
... .++||+|+.... ..+...+++.+.++|||||.+++..+.
T Consensus 193 ~~~------~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 193 ADE------GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred hhc------cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 221 478999986432 345678999999999999999998753
No 67
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.27 E-value=1.6e-10 Score=107.18 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=85.3
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C-CCcEEEEEcc
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGL 194 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l-~~~v~~~~gd 194 (294)
.++++||+||||+ |..+..++... +..+++++|++++.++.+++++...+ + ..+++++.+|
T Consensus 71 ~~p~~VL~iG~G~---------------G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D 134 (270)
T TIGR00417 71 PNPKHVLVIGGGD---------------GGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD 134 (270)
T ss_pred CCCCEEEEEcCCc---------------hHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc
Confidence 3567999999999 98888777654 35789999999999999999986543 1 3579999999
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCcc-----c--hHHHHHHHHhcccCCeEEEEe
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKR-----M--YQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~-----~--~~~~~~~~~~lLkpgG~ivid 243 (294)
+.+.++.. .++||+|++|.... . ..++++.+.+.|+|||++++.
T Consensus 135 ~~~~l~~~-----~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 135 GFKFLADT-----ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred hHHHHHhC-----CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 98887654 57999999987511 1 468899999999999999986
No 68
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.26 E-value=4.5e-11 Score=105.81 Aligned_cols=103 Identities=13% Similarity=0.210 Sum_probs=82.5
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
..++.+|||+|||+ |..++.++.. +.+|+++|+++++++.++++.+..++. ++++..+|..
T Consensus 28 ~~~~~~vLDiGcG~---------------G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~ 88 (197)
T PRK11207 28 VVKPGKTLDLGCGN---------------GRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLN 88 (197)
T ss_pred cCCCCcEEEECCCC---------------CHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChh
Confidence 44567999999999 9999999874 579999999999999999999988885 5888888875
Q ss_pred hhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEE-Eecc
Q 022597 197 DSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIV-IDNV 245 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~iv-id~v 245 (294)
+.. + .++||+|+... +......+++.+.++|+|||.++ +..+
T Consensus 89 ~~~--~-----~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 89 NLT--F-----DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred hCC--c-----CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 431 1 36799998643 23457899999999999999954 4433
No 69
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.26 E-value=1.1e-11 Score=94.24 Aligned_cols=92 Identities=22% Similarity=0.337 Sum_probs=74.1
Q ss_pred EEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHh
Q 022597 124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 203 (294)
Q Consensus 124 LEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~ 203 (294)
||+|||+ |..+..++.. ++.+|+++|+++++++.+++..+.. ++.+..+|..+. + +
T Consensus 1 LdiG~G~---------------G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~-~- 56 (95)
T PF08241_consen 1 LDIGCGT---------------GRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-P-F- 56 (95)
T ss_dssp EEET-TT---------------SHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-S-S-
T ss_pred CEecCcC---------------CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-c-c-
Confidence 7999999 9999999997 4789999999999999999987643 456999998765 2 1
Q ss_pred hcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEE
Q 022597 204 LNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 204 ~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
++++||+|+.... .++...+++.+.+.|||||.+++
T Consensus 57 ---~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 57 ---PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---ccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 2689999987642 36788999999999999999986
No 70
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.26 E-value=1.1e-10 Score=109.34 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=87.0
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++++|||+|||+ |..++.+++. + ..+|+++|+++.+++.|+++++.+++.+++++..++...
T Consensus 158 ~~g~~VLDvGcGs---------------G~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~ 220 (288)
T TIGR00406 158 LKDKNVIDVGCGS---------------GILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ 220 (288)
T ss_pred CCCCEEEEeCCCh---------------hHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc
Confidence 3568999999999 9999887763 3 469999999999999999999999998888888776321
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
. ..++||+|+.+.....+..+++.+.+.|+|||.+++..++
T Consensus 221 ~--------~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 221 P--------IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred c--------cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 1 1468999999877666788999999999999999998764
No 71
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.26 E-value=2.7e-10 Score=100.71 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=88.2
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
...+.+|||++||+ |..++.++... ..+|+++|.+++.++.++++++.+++.++++++.+|+.
T Consensus 47 ~~~g~~vLDLfaGs---------------G~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 47 EIQGAHLLDVFAGS---------------GLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred hcCCCEEEEecCCC---------------cHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 34678999999999 98888887753 35899999999999999999999999888999999998
Q ss_pred hhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHH--hcccCCeEEEEecc
Q 022597 197 DSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLL--QLIRVGGIIVIDNV 245 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~--~lLkpgG~ivid~v 245 (294)
+.++.+... ...||+||.|++ ...+.+.++.+. .+|+++|++++..-
T Consensus 110 ~~l~~~~~~--~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 110 RALKFLAKK--PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHHhhcc--CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 877654211 235899999997 344667777665 47999999998643
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.25 E-value=1.1e-10 Score=105.20 Aligned_cols=116 Identities=22% Similarity=0.398 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 104 SPDQAQLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
.|++..++..+.... ++.+|||+|||+ |..+..++...+ +.+++++|+++++++.|+++++.
T Consensus 70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G~---------------G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 70 RPDTEELVEAALERLKKGPLRVLDLGTGS---------------GAIALALAKERP-DARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred CCChHHHHHHHHHhcccCCCeEEEEeCcH---------------hHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 344555555555433 345899999999 999999998875 67999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-----------------------------chHHHHHHHHh
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------------------------MYQEYFELLLQ 232 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-----------------------------~~~~~~~~~~~ 232 (294)
.++. +++++++|+.+..+ .++||+|+.+++-. .+..+++.+.+
T Consensus 134 ~~~~-~~~~~~~d~~~~~~-------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~ 205 (251)
T TIGR03534 134 LGLD-NVTFLQSDWFEPLP-------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR 205 (251)
T ss_pred cCCC-eEEEEECchhccCc-------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence 8886 69999999875321 47899999875410 13467888899
Q ss_pred cccCCeEEEEe
Q 022597 233 LIRVGGIIVID 243 (294)
Q Consensus 233 lLkpgG~ivid 243 (294)
.|+|||.+++.
T Consensus 206 ~L~~gG~~~~~ 216 (251)
T TIGR03534 206 LLKPGGWLLLE 216 (251)
T ss_pred hcccCCEEEEE
Confidence 99999999885
No 73
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=7.9e-11 Score=112.28 Aligned_cols=116 Identities=24% Similarity=0.353 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
..|..-..+...+.+.++.+|||+|||+ |+.+..+++..+..++|+++|.++++++.|+++++..
T Consensus 64 ~~p~l~a~ll~~L~i~~g~~VLDIG~Gt---------------G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~ 128 (322)
T PRK13943 64 SQPSLMALFMEWVGLDKGMRVLEIGGGT---------------GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL 128 (322)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEEeCCc---------------cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3454433333344556678999999999 9999999998765678999999999999999999999
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
|.. +++++++|+.+..+. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 129 g~~-nV~~i~gD~~~~~~~------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 129 GIE-NVIFVCGDGYYGVPE------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCC-cEEEEeCChhhcccc------cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence 984 699999998765432 3579999998764433 34567889999998874
No 74
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.25 E-value=6.2e-11 Score=115.20 Aligned_cols=118 Identities=10% Similarity=0.118 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
.++.+..-++..+-. ....+|||+|||+ |..++.+++..| +.+|+++|.|+.+++.|+++++.
T Consensus 212 ~LD~GtrllL~~lp~-~~~~~VLDLGCGt---------------Gvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 212 GLDIGARFFMQHLPE-NLEGEIVDLGCGN---------------GVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred CcChHHHHHHHhCCc-ccCCeEEEEeccc---------------cHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 345555444444432 2345999999999 999999999876 78999999999999999999998
Q ss_pred hCCC--CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEEe
Q 022597 182 AGVS--HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 182 ~gl~--~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------~~~~~~~~~~~~lLkpgG~ivid 243 (294)
++.. .++++..+|..+.++ .++||+|+.+++- ....++|..+.+.|+|||.+++-
T Consensus 275 n~~~~~~~v~~~~~D~l~~~~-------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 275 NMPEALDRCEFMINNALSGVE-------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred cCcccCceEEEEEccccccCC-------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 8754 378999888754321 3589999998661 12457888899999999998875
No 75
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.25 E-value=1.1e-10 Score=109.47 Aligned_cols=123 Identities=22% Similarity=0.294 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
+-.||...=.++.+...+++||++-||| |..+++.+..- ..+|++||.|...++.|++|++.+
T Consensus 107 lFlDqR~nR~~v~~~~~gkrvLnlFsYT---------------Ggfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lN 169 (286)
T PF10672_consen 107 LFLDQRENRKWVRKYAKGKRVLNLFSYT---------------GGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALN 169 (286)
T ss_dssp S-GGGHHHHHHHHHHCTTCEEEEET-TT---------------THHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHT
T ss_pred EcHHHHhhHHHHHHHcCCCceEEecCCC---------------CHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHc
Confidence 3344444444445556678999999999 88888766531 358999999999999999999999
Q ss_pred CCC-CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 183 GVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---------KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 183 gl~-~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---------~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
|++ ++++++.+|+.+.++.+.. .++||+|++|++ ..+|.+++..+.++|+|||++++...
T Consensus 170 g~~~~~~~~~~~Dvf~~l~~~~~---~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 170 GLDLDRHRFIQGDVFKFLKRLKK---GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp T-CCTCEEEEES-HHHHHHHHHH---TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCccceEEEecCHHHHHHHHhc---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 986 6899999999998877543 468999999988 34688999999999999999887655
No 76
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.24 E-value=1.6e-10 Score=101.87 Aligned_cols=124 Identities=24% Similarity=0.411 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
.+.-...+..++-.. ..+.++||+-||| |..++..+.. ...+|+.||.|++.++..++|++.
T Consensus 25 ~drvrealFniL~~~~~~g~~vLDLFaGS---------------GalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~ 87 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLEGARVLDLFAGS---------------GALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEK 87 (183)
T ss_dssp SHHHHHHHHHHHHCH-HTT-EEEETT-TT---------------SHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcccccCCCeEEEcCCcc---------------CccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHH
Confidence 333345555555555 6788999999988 8888765543 247999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccc-hHHHHHHHH--hcccCCeEEEEecc
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRM-YQEYFELLL--QLIRVGGIIVIDNV 245 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~-~~~~~~~~~--~lLkpgG~ivid~v 245 (294)
.+..++++++.+|+...+..+... ..+||+||+|++ ... +.+.++.+. .+|+++|+|++..-
T Consensus 88 l~~~~~~~v~~~d~~~~l~~~~~~--~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 88 LGLEDKIRVIKGDAFKFLLKLAKK--GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HT-GGGEEEEESSHHHHHHHHHHC--TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hCCCcceeeeccCHHHHHHhhccc--CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 999999999999998888766432 589999999997 333 488888887 79999999998653
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=99.24 E-value=1.5e-10 Score=99.66 Aligned_cols=110 Identities=16% Similarity=0.245 Sum_probs=86.5
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc-
Q 022597 109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK- 187 (294)
Q Consensus 109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~- 187 (294)
.++.......+++++||+|||+ |..+..++.. +.+++++|+++++++.++++++..++.++
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~---------------G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 74 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGS---------------GIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNG 74 (188)
T ss_pred HHHHHhhhccCCCEEEEEcccc---------------CHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcc
Confidence 3444444446778999999999 9999988876 58999999999999999999999888655
Q ss_pred EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc------------------------cchHHHHHHHHhcccCCeEEEEe
Q 022597 188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEK------------------------RMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~------------------------~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+.++++|..+.+. ..+||+|+.+++- ..+..+++.+.+.|+|||.+++-
T Consensus 75 ~~~~~~d~~~~~~-------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 75 VEVIRSDLFEPFR-------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred eEEEecccccccc-------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8899888765321 3489999987531 11456789999999999988763
No 78
>PRK04266 fibrillarin; Provisional
Probab=99.24 E-value=9.3e-11 Score=106.54 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=88.3
Q ss_pred HHHHHHHH--HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597 107 QAQLLAML--VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 184 (294)
Q Consensus 107 ~~~lL~~l--~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl 184 (294)
.+.+++.+ +.+.++.+|||+|||+ |..+..++...+ .++|+++|+++++++.+.++++..
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~---------------G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-- 119 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAAS---------------GTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-- 119 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCC---------------CHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--
Confidence 34444434 5566778999999999 999999999886 789999999999999887776642
Q ss_pred CCcEEEEEcchhhhH--HHHhhcCCCCceeEEEEcCCcc-chHHHHHHHHhcccCCeEEEEecccC
Q 022597 185 SHKVKIKHGLAADSL--KALILNGEASSYDFAFVDAEKR-MYQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 185 ~~~v~~~~gda~~~l--~~l~~~~~~~~fD~vfiD~~~~-~~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
.++.++.+|+.+.. ..+ .++||+||.|.... .....++.+.+.|||||.+++. +-|
T Consensus 120 -~nv~~i~~D~~~~~~~~~l-----~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~-v~~ 178 (226)
T PRK04266 120 -KNIIPILADARKPERYAHV-----VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA-IKA 178 (226)
T ss_pred -CCcEEEECCCCCcchhhhc-----cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE-Eec
Confidence 46899999986421 112 35699999887532 2345688999999999999986 444
No 79
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.24 E-value=6.7e-11 Score=118.96 Aligned_cols=101 Identities=20% Similarity=0.333 Sum_probs=84.6
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
+.+|||+|||+ |..++.++...+ +++|+++|+|+++++.|+++++.+++.++++++.+|..+.+
T Consensus 139 ~~~VLDlG~Gs---------------G~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~ 202 (506)
T PRK01544 139 FLNILELGTGS---------------GCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI 202 (506)
T ss_pred CCEEEEccCch---------------hHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC
Confidence 45899999999 999999998876 68999999999999999999999999889999999986532
Q ss_pred HHHhhcCCCCceeEEEEcCCc-----------------------------cchHHHHHHHHhcccCCeEEEEe
Q 022597 200 KALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfiD~~~-----------------------------~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+ .++||+|+.+++- ..|..+++.+.+.|+|||.+++.
T Consensus 203 ~-------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 203 E-------KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred c-------CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1 3589999986530 12556677778899999999885
No 80
>PRK08317 hypothetical protein; Provisional
Probab=99.24 E-value=1.9e-10 Score=101.77 Aligned_cols=116 Identities=21% Similarity=0.279 Sum_probs=90.7
Q ss_pred HHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE
Q 022597 112 AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK 191 (294)
Q Consensus 112 ~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~ 191 (294)
...+.+.++.+|||+|||+ |..+..++...++.++++++|+++++++.++++.. +...++++.
T Consensus 12 ~~~~~~~~~~~vLdiG~G~---------------G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~ 74 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGP---------------GNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFV 74 (241)
T ss_pred HHHcCCCCCCEEEEeCCCC---------------CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEE
Confidence 3344556677999999999 99999999887557899999999999999998833 334578999
Q ss_pred EcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597 192 HGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 192 ~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~ 250 (294)
.+|+.+.. + ..++||+|+.... ..+...+++.+.+.|+|||.+++....|...
T Consensus 75 ~~d~~~~~--~----~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 130 (241)
T PRK08317 75 RGDADGLP--F----PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTL 130 (241)
T ss_pred ecccccCC--C----CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCce
Confidence 88875431 1 1478999987643 3467889999999999999999987655443
No 81
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.24 E-value=7.4e-11 Score=104.26 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=79.9
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
+...++.+|||+|||+ |..+.+++.. +.+|+++|+++.+++.++++.+..|+. +++...|
T Consensus 26 ~~~~~~~~vLDiGcG~---------------G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d 85 (195)
T TIGR00477 26 VKTVAPCKTLDLGCGQ---------------GRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYD 85 (195)
T ss_pred hccCCCCcEEEeCCCC---------------CHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEecc
Confidence 3444567999999999 9999999873 579999999999999999999888874 7777777
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEE
Q 022597 195 AADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.... .+ .++||+|+... +......+++.+.+.|+|||++++
T Consensus 86 ~~~~--~~-----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 86 INAA--AL-----NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred chhc--cc-----cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 6432 11 35799997642 234677899999999999998554
No 82
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.24 E-value=7.2e-11 Score=104.24 Aligned_cols=123 Identities=20% Similarity=0.340 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHh-hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQ-ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~-~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
.+.-...+..++.+ ...+.+|||+-+|+ |..++. ...+...+++.||.|.+.+...++|++.
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGS---------------GaLGlE--AlSRGA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGS---------------GALGLE--ALSRGAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCc---------------cHhHHH--HHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 33334444455544 25556666666665 555554 4444467999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHH----hcccCCeEEEEecc
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLL----QLIRVGGIIVIDNV 245 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~----~lLkpgG~ivid~v 245 (294)
.+...+++++.+|+...++.+.. .++||+||+|++ +..+......+. .+|+|+|.+++..-
T Consensus 89 l~~~~~~~~~~~da~~~L~~~~~---~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 89 LGLEGEARVLRNDALRALKQLGT---REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred hCCccceEEEeecHHHHHHhcCC---CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 99989999999999977766521 235999999998 334433333333 67999999998654
No 83
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.23 E-value=6.9e-11 Score=107.82 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=81.6
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...++.+|||||||+ |..+..++...+ +++|+++|+++.+++.|++++ .++.++.+|+
T Consensus 28 ~~~~~~~vLDiGcG~---------------G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~ 85 (258)
T PRK01683 28 PLENPRYVVDLGCGP---------------GNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADI 85 (258)
T ss_pred CCcCCCEEEEEcccC---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECch
Confidence 344567999999999 999999998875 689999999999999998764 2578899998
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+..+ .++||+|+.... ..+...+++.+.+.|+|||.+++.
T Consensus 86 ~~~~~-------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 86 ASWQP-------PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hccCC-------CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 65421 468999998754 345788999999999999999885
No 84
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.22 E-value=1.3e-10 Score=109.11 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=93.4
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcE
Q 022597 109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188 (294)
Q Consensus 109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v 188 (294)
+.+.......+.++|||||||+ |..+..+++..| +.+++++|. +++++.+++++++.|+.+++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~---------------G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv 201 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGI---------------GDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRM 201 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCch---------------hHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceE
Confidence 3344444556778999999999 999999999986 789999998 78999999999999999999
Q ss_pred EEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597 189 KIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 249 (294)
Q Consensus 189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g 249 (294)
+++.+|+.+. . ...+|.|++.. +......+++.+.+.|+|||.+++.++.+..
T Consensus 202 ~~~~~d~~~~--~------~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 202 RGIAVDIYKE--S------YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259 (306)
T ss_pred EEEecCccCC--C------CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 9999998642 1 13479886543 2334567899999999999999998886643
No 85
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.20 E-value=8.4e-11 Score=107.55 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=78.8
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
..++.+|||+|||+ |..+..++...| +++|+++|+++.+++.|++. +++++.+|+.
T Consensus 27 ~~~~~~vLDlGcG~---------------G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~ 82 (255)
T PRK14103 27 AERARRVVDLGCGP---------------GNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVR 82 (255)
T ss_pred CCCCCEEEEEcCCC---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChh
Confidence 34567999999999 999999998875 68999999999999998652 4788899986
Q ss_pred hhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597 197 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+..+ .++||+|+.... ..+....++.+.+.|+|||.+++.
T Consensus 83 ~~~~-------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 83 DWKP-------KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hCCC-------CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 5421 468999998643 345678899999999999999985
No 86
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.20 E-value=8.2e-11 Score=107.20 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=86.7
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+.+|||||||- |..+..+|+. +..||++|.+++.+++|+....+.|+. +.+.+..+.+
T Consensus 58 l~g~~vLDvGCGg---------------G~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~ed 117 (243)
T COG2227 58 LPGLRVLDVGCGG---------------GILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVED 117 (243)
T ss_pred CCCCeEEEecCCc---------------cHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHH
Confidence 4677999999999 9999999985 589999999999999999999999885 7777777766
Q ss_pred hHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597 198 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH 248 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~ 248 (294)
.... .++||+|..--- .++...++..|.+++||||++++..+..+
T Consensus 118 l~~~------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 118 LASA------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred HHhc------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 5432 389999975321 34567799999999999999999988643
No 87
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.19 E-value=1.4e-10 Score=107.20 Aligned_cols=107 Identities=12% Similarity=0.194 Sum_probs=85.2
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
+.+.++.+|||||||+ |..+..++... +++|+++|+++++++.|+++... .+++++..+|
T Consensus 48 l~l~~~~~VLDiGcG~---------------G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D 107 (263)
T PTZ00098 48 IELNENSKVLDIGSGL---------------GGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEAND 107 (263)
T ss_pred CCCCCCCEEEEEcCCC---------------ChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECC
Confidence 3556778999999999 99888887753 57999999999999999987653 4579999999
Q ss_pred hhhhHHHHhhcCCCCceeEEEEc-C----CccchHHHHHHHHhcccCCeEEEEecccC
Q 022597 195 AADSLKALILNGEASSYDFAFVD-A----EKRMYQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD-~----~~~~~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
+.+.. + +.++||+|+.. . +..+...+++.+.++|+|||.+++.+...
T Consensus 108 ~~~~~--~----~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 108 ILKKD--F----PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred cccCC--C----CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 86421 1 24789999873 2 22467889999999999999999987643
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.19 E-value=1.9e-10 Score=109.51 Aligned_cols=117 Identities=20% Similarity=0.281 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
.+.|..+..+..++...++.+|||.|||+ |...+..+.. +.+++++|+++++++.|+++++.
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGt---------------G~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~ 226 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGT---------------GGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEH 226 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCC---------------CHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHH
Confidence 56788888888888888888999999999 9877765543 67999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEe
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+|+.+ +++..+|+.+.... .++||.|+.|++- ..|.++++.+.+.|+|||.+++-
T Consensus 227 ~g~~~-i~~~~~D~~~l~~~------~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 227 YGIED-FFVKRGDATKLPLS------SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred hCCCC-CeEEecchhcCCcc------cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 99986 89999999764211 4689999999651 22688999999999999998764
No 89
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.18 E-value=5.1e-10 Score=102.99 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=80.4
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
+.+|||+|||+ |..++.++...+ +.+|+++|+|+++++.|+++++.+| ++++.+|..+.+
T Consensus 87 ~~~vLDlg~Gs---------------G~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l 146 (251)
T TIGR03704 87 TLVVVDLCCGS---------------GAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDAL 146 (251)
T ss_pred CCEEEEecCch---------------HHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhc
Confidence 35899999999 999999998765 5789999999999999999998866 378899987654
Q ss_pred HHHhhcCCCCceeEEEEcCCcc-----------------------------chHHHHHHHHhcccCCeEEEEe
Q 022597 200 KALILNGEASSYDFAFVDAEKR-----------------------------MYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfiD~~~~-----------------------------~~~~~~~~~~~lLkpgG~ivid 243 (294)
+... .++||+|+.|++.- .+..+++.+.++|+|||.+++.
T Consensus 147 ~~~~----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 147 PTAL----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred chhc----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3321 35799999987510 0456777778999999999876
No 90
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.18 E-value=2.9e-10 Score=101.12 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=88.2
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||+|||+ |..+..++...+...+++++|+++++++.+++++...++..+++++.+|+.+.
T Consensus 51 ~~~~vldiG~G~---------------G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 51 PGDKVLDLACGT---------------GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred CCCeEEEeCCCC---------------CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 456999999999 99999999987656899999999999999999998877777899999998664
Q ss_pred HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.. +.++||+|+.... ..+...+++.+.++|+|||.+++-+.
T Consensus 116 ~~------~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 116 PF------PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CC------CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 21 1468999987532 44678899999999999999887544
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=99.18 E-value=4e-10 Score=101.28 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=80.0
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.+..+|||+|||+ |..++.++.. + ..+++++|+++++++.++++++..++ +++++.+|..+
T Consensus 35 ~~~~~vLDlGcG~---------------G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~ 95 (223)
T PRK14967 35 GPGRRVLDLCTGS---------------GALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWAR 95 (223)
T ss_pred CCCCeEEEecCCH---------------HHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhh
Confidence 4457999999999 9998888874 2 35999999999999999999998887 48899998865
Q ss_pred hHHHHhhcCCCCceeEEEEcCCcc------------------------chHHHHHHHHhcccCCeEEEE
Q 022597 198 SLKALILNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~------------------------~~~~~~~~~~~lLkpgG~ivi 242 (294)
.++ .++||+|+.+++.. .+..+++.+.++|+|||.+++
T Consensus 96 ~~~-------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 96 AVE-------FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred hcc-------CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 422 46899999985410 145677888999999999986
No 92
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.18 E-value=6.2e-10 Score=105.41 Aligned_cols=121 Identities=19% Similarity=0.096 Sum_probs=89.9
Q ss_pred CCCCCCHHHHHHHHHH----HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH
Q 022597 99 SQMQVSPDQAQLLAML----VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174 (294)
Q Consensus 99 ~~~~v~~~~~~lL~~l----~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~ 174 (294)
+..++.+.+++.+... +...++.+|||+|||+ |..++.++.. +.+|+++|.++++++.
T Consensus 149 sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~---------------G~~sl~la~~---~~~V~gvD~s~~av~~ 210 (315)
T PRK03522 149 SFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGV---------------GGFGLHCATP---GMQLTGIEISAEAIAC 210 (315)
T ss_pred eeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHhc---CCEEEEEeCCHHHHHH
Confidence 3456666655554432 2223568999999999 9999999873 5799999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
|+++++.+|+ ++++++.+|+.+..... .++||+|++|++.......+......++|++++++.
T Consensus 211 A~~n~~~~~l-~~v~~~~~D~~~~~~~~-----~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 211 AKQSAAELGL-TNVQFQALDSTQFATAQ-----GEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred HHHHHHHcCC-CceEEEEcCHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence 9999999998 57999999998765432 357999999998655433333333446788777653
No 93
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.17 E-value=3.1e-10 Score=104.13 Aligned_cols=116 Identities=19% Similarity=0.374 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHH---hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597 104 SPDQAQLLAMLV---QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180 (294)
Q Consensus 104 ~~~~~~lL~~l~---~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~ 180 (294)
.|++..++..+. ...++.+|||+|||+ |..++.++...+ ..+++++|+++++++.|+++++
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~Gs---------------G~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGS---------------GAIALALAKERP-DAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcH---------------HHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 344455555544 234567999999999 999999999875 6899999999999999999998
Q ss_pred HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----------------------------cchHHHHHHHH
Q 022597 181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELLL 231 (294)
Q Consensus 181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----------------------------~~~~~~~~~~~ 231 (294)
.+...+++++.+|..+.++ .++||+|+.+++- ..|..+++.+.
T Consensus 154 -~~~~~~i~~~~~d~~~~~~-------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~ 225 (275)
T PRK09328 154 -HGLGARVEFLQGDWFEPLP-------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAP 225 (275)
T ss_pred -hCCCCcEEEEEccccCcCC-------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHH
Confidence 4455679999999854321 3689999987541 12566778888
Q ss_pred hcccCCeEEEEe
Q 022597 232 QLIRVGGIIVID 243 (294)
Q Consensus 232 ~lLkpgG~ivid 243 (294)
++|+|||.+++.
T Consensus 226 ~~Lk~gG~l~~e 237 (275)
T PRK09328 226 RYLKPGGWLLLE 237 (275)
T ss_pred HhcccCCEEEEE
Confidence 999999999984
No 94
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=3.9e-10 Score=105.52 Aligned_cols=117 Identities=19% Similarity=0.376 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHH-hhhCCC-eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 104 SPDQAQLLAMLV-QILGAQ-RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 104 ~~~~~~lL~~l~-~~~~~~-~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
.|++..++..+. ...... +|||+|||+ |..+++++...+ ..+|+++|+|++.++.|++|++.
T Consensus 93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGS---------------G~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 93 RPDTELLVEAALALLLQLDKRILDLGTGS---------------GAIAIALAKEGP-DAEVIAVDISPDALALARENAER 156 (280)
T ss_pred CCchHHHHHHHHHhhhhcCCcEEEecCCh---------------HHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHH
Confidence 567777777643 222222 799999999 999999999887 68999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---cc-------------------------chHHHHHHHHhc
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KR-------------------------MYQEYFELLLQL 233 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~-------------------------~~~~~~~~~~~l 233 (294)
+|+ .++.++.+|..+.+ .++||+|+.+++ .+ -|..+++.+...
T Consensus 157 ~~l-~~~~~~~~dlf~~~--------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~ 227 (280)
T COG2890 157 NGL-VRVLVVQSDLFEPL--------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI 227 (280)
T ss_pred cCC-ccEEEEeeeccccc--------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHH
Confidence 999 66777777665443 468999988765 11 266777778889
Q ss_pred ccCCeEEEEecc
Q 022597 234 IRVGGIIVIDNV 245 (294)
Q Consensus 234 LkpgG~ivid~v 245 (294)
|+|||++++.--
T Consensus 228 l~~~g~l~le~g 239 (280)
T COG2890 228 LKPGGVLILEIG 239 (280)
T ss_pred cCCCcEEEEEEC
Confidence 999999987643
No 95
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.16 E-value=3.1e-10 Score=105.95 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=81.6
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...++.+|||+|||+ |..++.++.. +.+|+++|.|+++++.++++.+..++ ++++...|.
T Consensus 117 ~~~~~~~vLDlGcG~---------------G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~ 176 (287)
T PRK12335 117 QTVKPGKALDLGCGQ---------------GRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDI 176 (287)
T ss_pred hccCCCCEEEeCCCC---------------CHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEech
Confidence 335667999999999 9999998873 57999999999999999999998888 588888877
Q ss_pred hhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEE
Q 022597 196 ADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.+.. + .++||+|+... .......+++.+.+.|+|||++++
T Consensus 177 ~~~~--~-----~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 177 NSAS--I-----QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hccc--c-----cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5421 1 47899998653 235678899999999999999655
No 96
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.9e-10 Score=108.27 Aligned_cols=112 Identities=20% Similarity=0.299 Sum_probs=86.4
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcE
Q 022597 109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188 (294)
Q Consensus 109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v 188 (294)
++|..+.+ ++++|||+|||+ |..+++.++-- ..+++++|+||..++.|++|++.+++...+
T Consensus 154 ~~Le~~~~--~g~~vlDvGcGS---------------GILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~ 214 (300)
T COG2264 154 EALEKLLK--KGKTVLDVGCGS---------------GILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLV 214 (300)
T ss_pred HHHHHhhc--CCCEEEEecCCh---------------hHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhh
Confidence 44444444 788999999999 98888877742 467999999999999999999999998644
Q ss_pred EEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 189 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
+....+..+... .++||+|+.+---+-...+.+.+.++++|||++++..++
T Consensus 215 ~~~~~~~~~~~~-------~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 215 QAKGFLLLEVPE-------NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred hcccccchhhcc-------cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 444333332221 369999998865555667888889999999999999774
No 97
>PLN02823 spermine synthase
Probab=99.15 E-value=1e-09 Score=105.28 Aligned_cols=104 Identities=14% Similarity=0.243 Sum_probs=84.8
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC---CCCcEEEEEcch
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLA 195 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g---l~~~v~~~~gda 195 (294)
++++||.||+|. |..+..+++.. +..+|+.||+|++.++.|++++...+ -.++++++.+|+
T Consensus 103 ~pk~VLiiGgG~---------------G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da 166 (336)
T PLN02823 103 NPKTVFIMGGGE---------------GSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA 166 (336)
T ss_pred CCCEEEEECCCc---------------hHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh
Confidence 678999999999 98888777743 35789999999999999999986432 247899999999
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCcc---------chHHHHH-HHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKR---------MYQEYFE-LLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~---------~~~~~~~-~~~~lLkpgG~ivid 243 (294)
...++.. .++||+||+|...+ ...++++ .+.+.|+|||++++.
T Consensus 167 ~~~L~~~-----~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 167 RAELEKR-----DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred HHHHhhC-----CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9988653 57899999995421 1457888 899999999999864
No 98
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.15 E-value=4.3e-10 Score=107.13 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=84.9
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
....+++|||||||+ |+.+..++...+ .+|+++|+++.++..++..-+..+...+++++.+++
T Consensus 119 ~~l~g~~VLDIGCG~---------------G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~ 181 (322)
T PRK15068 119 SPLKGRTVLDVGCGN---------------GYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI 181 (322)
T ss_pred CCCCCCEEEEeccCC---------------cHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH
Confidence 335678999999999 999999988643 479999999998876655444444455799999988
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597 196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 249 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g 249 (294)
.+... .++||+||.-.. ..+...+++.+.+.|+|||.++++.....|
T Consensus 182 e~lp~-------~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 182 EQLPA-------LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred HHCCC-------cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 65421 368999997532 345788999999999999999998765544
No 99
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.15 E-value=5.7e-10 Score=108.67 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=87.4
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
.+..+||||||+ |..++.+|...| +..++|+|+++.+++.|.+.+...|+. ++.++.+|+.+.
T Consensus 122 ~~p~vLEIGcGs---------------G~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~l 184 (390)
T PRK14121 122 QEKILIEIGFGS---------------GRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLL 184 (390)
T ss_pred CCCeEEEEcCcc---------------cHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHh
Confidence 446899999999 999999999986 789999999999999999999999986 599999999876
Q ss_pred HHHHhhcCCCCceeEEEEcCCcc---------chHHHHHHHHhcccCCeEEEE
Q 022597 199 LKALILNGEASSYDFAFVDAEKR---------MYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~~---------~~~~~~~~~~~lLkpgG~ivi 242 (294)
+..+ +.+++|.|+++.+.+ ....+++.+.+.|+|||.+.+
T Consensus 185 l~~~----~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 185 LELL----PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred hhhC----CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 5443 257999998864311 136899999999999999887
No 100
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.14 E-value=5.6e-10 Score=107.27 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
+.+.+..++..+.. ....+|||+|||+ |..+..++...+ +.+|+++|+++.+++.|+++++.+
T Consensus 181 lD~gt~lLl~~l~~-~~~g~VLDlGCG~---------------G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n 243 (342)
T PRK09489 181 LDVGSQLLLSTLTP-HTKGKVLDVGCGA---------------GVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAAN 243 (342)
T ss_pred CCHHHHHHHHhccc-cCCCeEEEeccCc---------------CHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 34444444444433 3345899999999 999999998765 678999999999999999999999
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEE
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------~~~~~~~~~~~~lLkpgG~ivi 242 (294)
++. .+++.+|..+. . .++||+|+.+++- ....++++.+.+.|+|||.+++
T Consensus 244 ~l~--~~~~~~D~~~~---~-----~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 244 GLE--GEVFASNVFSD---I-----KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred CCC--CEEEEcccccc---c-----CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 875 46677776432 1 4789999998651 2357889999999999999865
No 101
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.14 E-value=5.3e-10 Score=109.72 Aligned_cols=117 Identities=18% Similarity=0.293 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 104 SPDQAQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 104 ~~~~~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
.|++..++..+... .+..+|||+|||+ |..++.++...+ +++++++|+|+++++.|+++++..
T Consensus 235 RpeTE~LVe~aL~~l~~~~rVLDLGcGS---------------G~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~ 298 (423)
T PRK14966 235 RPETEHLVEAVLARLPENGRVWDLGTGS---------------GAVAVTVALERP-DAFVRASDISPPALETARKNAADL 298 (423)
T ss_pred CccHHHHHHHhhhccCCCCEEEEEeChh---------------hHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 55677777776643 3456999999999 999999988765 789999999999999999999987
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHHHHHHhcc
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLI 234 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~~~~~~lL 234 (294)
+. +++++++|..+.... ..++||+|+.+++. ..|..+++.+.+.|
T Consensus 299 g~--rV~fi~gDl~e~~l~-----~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L 371 (423)
T PRK14966 299 GA--RVEFAHGSWFDTDMP-----SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL 371 (423)
T ss_pred CC--cEEEEEcchhccccc-----cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence 75 699999998653110 13579999998751 01556667777899
Q ss_pred cCCeEEEEe
Q 022597 235 RVGGIIVID 243 (294)
Q Consensus 235 kpgG~ivid 243 (294)
+|||.+++.
T Consensus 372 kpgG~lilE 380 (423)
T PRK14966 372 AEGGFLLLE 380 (423)
T ss_pred CCCcEEEEE
Confidence 999998763
No 102
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.11 E-value=3.6e-10 Score=106.57 Aligned_cols=114 Identities=21% Similarity=0.344 Sum_probs=86.0
Q ss_pred HHHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597 107 QAQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 185 (294)
Q Consensus 107 ~~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~ 185 (294)
+.--|..+-+. .++++|||+|||| |..+++.++. + ..+|+++|+||..++.|++|++.+|+.
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GS---------------GILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~ 210 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGS---------------GILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVE 210 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TT---------------SHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcH---------------HHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCC
Confidence 33444444444 4567999999999 9998887774 3 468999999999999999999999999
Q ss_pred CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecccC
Q 022597 186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
+++++. ...+. ..++||+|+.+--..-...+...+.++|+|||++++..++-
T Consensus 211 ~~~~v~--~~~~~--------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 211 DRIEVS--LSEDL--------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp TCEEES--CTSCT--------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred eeEEEE--Eeccc--------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 988774 22221 14899999998776666777888889999999999987753
No 103
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.11 E-value=6.1e-10 Score=110.47 Aligned_cols=107 Identities=14% Similarity=0.210 Sum_probs=86.1
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
.+.++.+|||||||+ |..+..++... +++|+++|+++++++.|+++.. +...++++..+|+
T Consensus 263 ~~~~~~~vLDiGcG~---------------G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~ 323 (475)
T PLN02336 263 DLKPGQKVLDVGCGI---------------GGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADC 323 (475)
T ss_pred CCCCCCEEEEEeccC---------------CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCc
Confidence 345677999999999 99998888765 5799999999999999998775 4556799999998
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597 196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
.+.. + +.++||+|+.... ..+...+++.+.+.|+|||.+++.+...
T Consensus 324 ~~~~--~----~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 324 TKKT--Y----PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ccCC--C----CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 6531 1 1468999987532 3457889999999999999999987643
No 104
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.09 E-value=2.5e-09 Score=103.70 Aligned_cols=120 Identities=18% Similarity=0.106 Sum_probs=93.1
Q ss_pred CCCCCCHHHHHHHHHHH-hh---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH
Q 022597 99 SQMQVSPDQAQLLAMLV-QI---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174 (294)
Q Consensus 99 ~~~~v~~~~~~lL~~l~-~~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~ 174 (294)
+..++.+.+.+-|...+ .. .++.+|||+|||+ |..++.++.. +.+|+++|.++++++.
T Consensus 209 ~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~---------------G~~~l~la~~---~~~v~~vE~~~~av~~ 270 (374)
T TIGR02085 209 SFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGV---------------GGFGLHCAGP---DTQLTGIEIESEAIAC 270 (374)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCc---------------cHHHHHHhhc---CCeEEEEECCHHHHHH
Confidence 44677777766665433 22 3567999999999 9999888843 5789999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEe
Q 022597 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid 243 (294)
|+++++.+|+. +++++.+|+.+.+... ..+||+||+|++... ..+.++.+. .++|++++++.
T Consensus 271 a~~N~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 271 AQQSAQMLGLD-NLSFAALDSAKFATAQ-----MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred HHHHHHHcCCC-cEEEEECCHHHHHHhc-----CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 99999999985 7999999998776432 356999999998554 445556664 47899888764
No 105
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.1e-09 Score=102.98 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
.++....-++..+-...++ +|||+|||. |+.++.+++..| ..+++.+|.|...++.|+++++.
T Consensus 142 ~lD~GS~lLl~~l~~~~~~-~vlDlGCG~---------------Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 142 KLDKGSRLLLETLPPDLGG-KVLDLGCGY---------------GVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred CcChHHHHHHHhCCccCCC-cEEEeCCCc---------------cHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHH
Confidence 4666666666666665555 999999999 999999999987 89999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----cc----hHHHHHHHHhcccCCeEEEE
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----RM----YQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----~~----~~~~~~~~~~lLkpgG~ivi 242 (294)
++++.. .+...|..+-. .++||+|+.+++- .- -+++++.+.+.|++||-+.+
T Consensus 205 N~~~~~-~v~~s~~~~~v--------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 205 NGVENT-EVWASNLYEPV--------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred cCCCcc-EEEEecccccc--------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 998764 77777776543 3589999999872 22 35889999999999998764
No 106
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.09 E-value=1.2e-09 Score=96.23 Aligned_cols=103 Identities=22% Similarity=0.286 Sum_probs=84.0
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||+|||+ |..+..++...+..++++++|+++.+++.+++++. ...++++..+|+.+.
T Consensus 39 ~~~~vldiG~G~---------------G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 39 KGQKVLDVACGT---------------GDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEAL 100 (223)
T ss_pred CCCeEEEeCCCC---------------ChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcC
Confidence 456999999999 99999999988644799999999999999998876 345789999998764
Q ss_pred HHHHhhcCCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEEEecc
Q 022597 199 LKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~---~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.. ..++||+|+... ...+...+++.+.+.|+|||.+++.+.
T Consensus 101 ~~------~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 101 PF------EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CC------CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 31 146899998653 245578899999999999999998654
No 107
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.08 E-value=1.3e-09 Score=96.70 Aligned_cols=101 Identities=21% Similarity=0.272 Sum_probs=81.6
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
.+.+|||+|||+ |..+..++...+ ..+++++|+++++++.+++.+. ++++++.+|..+.
T Consensus 34 ~~~~vLDlG~G~---------------G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~ 92 (240)
T TIGR02072 34 IPASVLDIGCGT---------------GYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKL 92 (240)
T ss_pred CCCeEEEECCCc---------------cHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhC
Confidence 456999999999 999999998875 6789999999999998887654 3688999988654
Q ss_pred HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.. ..++||+|+.... ..+...+++.+.++|+|||.+++....
T Consensus 93 ~~------~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 93 PL------EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred CC------CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 21 1578999998643 235678999999999999999987543
No 108
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.08 E-value=3.9e-09 Score=94.78 Aligned_cols=118 Identities=15% Similarity=0.230 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
+.|...+++.......++.+|||||||+ |..+..+++. +.+++++|++++.++.+++++...
T Consensus 32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~---------------G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~ 93 (233)
T PRK05134 32 INPLRLNYIREHAGGLFGKRVLDVGCGG---------------GILSESMARL---GADVTGIDASEENIEVARLHALES 93 (233)
T ss_pred hhHHHHHHHHHhccCCCCCeEEEeCCCC---------------CHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHc
Confidence 4444455555555555678999999999 9988888764 468999999999999999998876
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+. .+++..++..+..... .++||+|+.... ..+....++.+.+.|+|||.+++...
T Consensus 94 ~~--~~~~~~~~~~~~~~~~-----~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 94 GL--KIDYRQTTAEELAAEH-----PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred CC--ceEEEecCHHHhhhhc-----CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 65 5788888887654322 478999987532 33567889999999999999998653
No 109
>PRK03612 spermidine synthase; Provisional
Probab=99.08 E-value=7.3e-10 Score=111.85 Aligned_cols=106 Identities=19% Similarity=0.304 Sum_probs=84.8
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH--HHHh---CC-CCcEEEE
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERA---GV-SHKVKIK 191 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~--~~~~---gl-~~~v~~~ 191 (294)
.++++|||||||+ |..+..+++. ++..+++++|+|+++++.++++ +... .+ +++++++
T Consensus 296 ~~~~rVL~IG~G~---------------G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi 359 (521)
T PRK03612 296 ARPRRVLVLGGGD---------------GLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVV 359 (521)
T ss_pred CCCCeEEEEcCCc---------------cHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEE
Confidence 4678999999999 9999888863 4347999999999999999994 3321 22 3589999
Q ss_pred EcchhhhHHHHhhcCCCCceeEEEEcCCcc--------chHHHHHHHHhcccCCeEEEEec
Q 022597 192 HGLAADSLKALILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 192 ~gda~~~l~~l~~~~~~~~fD~vfiD~~~~--------~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.+|+.+.++.. .++||+|++|...+ ...++++.+.+.|+|||++++..
T Consensus 360 ~~Da~~~l~~~-----~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 360 NDDAFNWLRKL-----AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EChHHHHHHhC-----CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99999887654 57899999996522 13578999999999999999864
No 110
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.08 E-value=2.7e-09 Score=105.56 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHH-HHHh---hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597 101 MQVSPDQAQLLA-MLVQ---ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK 176 (294)
Q Consensus 101 ~~v~~~~~~lL~-~l~~---~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~ 176 (294)
.++.+.+.+.+. .+.. ..++.+|||+|||+ |..++.++... .+|+++|.|+++++.|+
T Consensus 275 ~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGt---------------G~~sl~la~~~---~~V~gvD~s~~al~~A~ 336 (443)
T PRK13168 275 IQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGL---------------GNFTLPLARQA---AEVVGVEGVEAMVERAR 336 (443)
T ss_pred EEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccC---------------CHHHHHHHHhC---CEEEEEeCCHHHHHHHH
Confidence 366777644443 3333 33557999999999 99999998763 68999999999999999
Q ss_pred HHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 177 KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 177 ~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
++++.+|+. +++++.+|+.+.+..... ..++||+|++|++.....+.++.+.+ ++|++++++.
T Consensus 337 ~n~~~~~~~-~v~~~~~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 337 ENARRNGLD-NVTFYHANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred HHHHHcCCC-ceEEEEeChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 999999986 599999999876543211 13579999999986666677766655 6888888775
No 111
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.07 E-value=2.6e-09 Score=95.48 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=78.1
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
.+.++.+|||+|||+ |..+..++...+ +.+++|+|+|+++++.|++++. ++.+..+|+
T Consensus 40 ~~~~~~~VLDiGCG~---------------G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~ 97 (204)
T TIGR03587 40 RLPKIASILELGANI---------------GMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSL 97 (204)
T ss_pred hcCCCCcEEEEecCC---------------CHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeec
Confidence 344667999999999 999999988765 6899999999999999987642 467788887
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597 196 ADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 249 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g 249 (294)
.+. . ..++||+|+.... +....+.++.+.+.+ ++++++.++.-+.
T Consensus 98 ~~~---~----~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 98 FDP---F----KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred cCC---C----CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 651 1 1579999987542 334567778887776 5688887775444
No 112
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.07 E-value=2.3e-09 Score=99.20 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=100.8
Q ss_pred ccccccccccccccccccCCChhHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhh--hCCCeEEEE
Q 022597 49 NCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQI--LGAQRCIEV 126 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~--~~~~~vLEi 126 (294)
-+|..-|+||..-.-|...+...-.++ ....+...+-++++...+.. . ..|-...+...+.+. .+..+|||+
T Consensus 19 ~~C~~~h~fd~a~~Gy~~ll~~~~~~~--~~~~d~~~~~~ar~~fl~~g--~--y~~l~~~i~~~l~~~l~~~~~~vLDi 92 (272)
T PRK11088 19 WICPQNHQFDCAKEGYVNLLPVQHKRS--KDPGDNKEMMQARRAFLDAG--H--YQPLRDAVANLLAERLDEKATALLDI 92 (272)
T ss_pred EEcCCCCCCccccCceEEeccccccCC--CCCCcCHHHHHHHHHHHHCC--C--hHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 466669999998877766664221111 11223334444444432221 1 223333332333322 244689999
Q ss_pred ccccccccccccccccCCCcHHHHHHHHHCCCC--cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhh
Q 022597 127 GVYTVCVSSYSTSILSLFSGYSSLAIALVLPES--GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 204 (294)
Q Consensus 127 G~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~--~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~ 204 (294)
|||+ |+.+..++...+.. ..++++|+++++++.|++.. .++++..+|+.+.. +
T Consensus 93 GcG~---------------G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp--~-- 147 (272)
T PRK11088 93 GCGE---------------GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLP--F-- 147 (272)
T ss_pred CCcC---------------CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCC--C--
Confidence 9999 99999999877632 47999999999999987653 25788888876532 1
Q ss_pred cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 205 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 205 ~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
..++||+|+....+ ..++.+.+.|+|||.+++-
T Consensus 148 --~~~sfD~I~~~~~~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 148 --ADQSLDAIIRIYAP----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred --cCCceeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence 15789999865433 2356778899999999974
No 113
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.07 E-value=3.3e-09 Score=104.31 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHH-HHHh---hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597 101 MQVSPDQAQLLA-MLVQ---ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK 176 (294)
Q Consensus 101 ~~v~~~~~~lL~-~l~~---~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~ 176 (294)
.++.+.+.+.+. .+.. ..++.+|||+|||+ |..++.++... .+|+++|.++++++.|+
T Consensus 270 ~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~---------------G~~sl~la~~~---~~V~~vE~~~~av~~a~ 331 (431)
T TIGR00479 270 FQVNSGQNEKLVDRALEALELQGEELVVDAYCGV---------------GTFTLPLAKQA---KSVVGIEVVPESVEKAQ 331 (431)
T ss_pred eecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCc---------------CHHHHHHHHhC---CEEEEEEcCHHHHHHHH
Confidence 455666544333 3333 33557999999999 99999998763 58999999999999999
Q ss_pred HHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEE
Q 022597 177 KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 177 ~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivi 242 (294)
++++.+|+. +++++.+|+.+.++.+... .++||+|++|++... ..++++.+.+ ++|++++++
T Consensus 332 ~n~~~~~~~-nv~~~~~d~~~~l~~~~~~--~~~~D~vi~dPPr~G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 332 QNAELNGIA-NVEFLAGTLETVLPKQPWA--GQIPDVLLLDPPRKGCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHHHHhCCC-ceEEEeCCHHHHHHHHHhc--CCCCCEEEECcCCCCCCHHHHHHHHh-cCCCEEEEE
Confidence 999999985 6999999998876553211 357999999998544 6777776654 889988776
No 114
>PRK06922 hypothetical protein; Provisional
Probab=99.06 E-value=2e-09 Score=110.33 Aligned_cols=112 Identities=14% Similarity=0.199 Sum_probs=87.7
Q ss_pred HHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE
Q 022597 112 AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK 191 (294)
Q Consensus 112 ~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~ 191 (294)
..+....++.+|||+|||+ |..+..++...| +++++++|+++.+++.|+++....+ .+++++
T Consensus 411 ~~i~d~~~g~rVLDIGCGT---------------G~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I 472 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGG---------------GVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVI 472 (677)
T ss_pred HHHhhhcCCCEEEEeCCCC---------------CHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEE
Confidence 3455566788999999999 999988888775 7899999999999999999876655 358889
Q ss_pred EcchhhhHHHHhhcCCCCceeEEEEcCC----------------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 192 HGLAADSLKALILNGEASSYDFAFVDAE----------------KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 192 ~gda~~~l~~l~~~~~~~~fD~vfiD~~----------------~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
++|+.+....+ ++++||+|+.... ......+++.+.+.|||||.+++-+.
T Consensus 473 ~gDa~dLp~~f----edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 473 KGDAINLSSSF----EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EcchHhCcccc----CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99987632112 2578999986421 13457889999999999999998654
No 115
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.06 E-value=4.7e-09 Score=98.89 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=82.5
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||+|||| |..+..++.+++.+.+++++|+|+++++.|+++++.....-++.++++|+.+.
T Consensus 63 ~~~~iLELGcGt---------------G~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 63 AGCELVELGSGS---------------SRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCeEEecCCCc---------------chhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 446899999999 99999999988656899999999999999999987654334578889999765
Q ss_pred HHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 199 LKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
++... ....+...++|.+.. ......+|+.+.+.|+|||.++++--
T Consensus 128 ~~~~~-~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 128 LALPP-EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred hhhhc-ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 43221 000113345555432 44567899999999999999987543
No 116
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.05 E-value=8.5e-10 Score=100.35 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=80.7
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597 108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 187 (294)
Q Consensus 108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~ 187 (294)
++.|...+...++.+|||+|||+ |..+..++.. +.+++++|+++++++.|+++.. .
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~ 86 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGP---------------GWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------A 86 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCC---------------CHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------C
Confidence 33333333334567999999999 9888877652 5799999999999999987643 2
Q ss_pred EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
..++.+|+.+.. + ..++||+|+.... ..+....+..+.+.|+|||.+++...
T Consensus 87 ~~~~~~d~~~~~--~----~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 87 DHYLAGDIESLP--L----ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred CCEEEcCcccCc--C----CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 467788876531 1 1468999998643 35678899999999999999998754
No 117
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.05 E-value=1.9e-09 Score=102.49 Aligned_cols=109 Identities=14% Similarity=0.132 Sum_probs=82.1
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
..++++|||||||+ |+.+..++... ..+|+|+|+++.++..++..-+..+...++.+..++..
T Consensus 119 ~~~g~~VLDvGCG~---------------G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie 181 (314)
T TIGR00452 119 PLKGRTILDVGCGS---------------GYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE 181 (314)
T ss_pred CCCCCEEEEeccCC---------------cHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH
Confidence 35568999999999 99988887653 25799999999998776544343344457888888775
Q ss_pred hhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597 197 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 249 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g 249 (294)
+... ..+||.||...- ..+....++.+.+.|+|||.+++......|
T Consensus 182 ~lp~-------~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 182 QLHE-------LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred HCCC-------CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 5321 358999987642 345678999999999999999998765544
No 118
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.02 E-value=8.5e-09 Score=99.68 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=92.1
Q ss_pred CCCCCCCHHHHHHHHHHH-hhhC--CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH
Q 022597 98 GSQMQVSPDQAQLLAMLV-QILG--AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174 (294)
Q Consensus 98 ~~~~~v~~~~~~lL~~l~-~~~~--~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~ 174 (294)
.+..|+.+.+.+.|...+ .... +.++||++||+ |..++.++... .+|+++|.++++++.
T Consensus 182 ~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~---------------G~~sl~la~~~---~~v~~vE~~~~ai~~ 243 (362)
T PRK05031 182 NSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGN---------------GNFTLALARNF---RRVLATEISKPSVAA 243 (362)
T ss_pred CCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccc---------------cHHHHHHHhhC---CEEEEEECCHHHHHH
Confidence 345677777665555443 3333 25799999999 99999888764 489999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCC----------CCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEe
Q 022597 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~----------~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid 243 (294)
|+++++.+|+. +++++.+|+.+.++.+..... ..+||+||+|++... ..+.++.+.+ +++++++.
T Consensus 244 a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 244 AQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred HHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence 99999999986 799999999988776532110 125999999998543 4566566654 67776654
No 119
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.01 E-value=2.5e-09 Score=102.76 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=79.2
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||||||+ |..++.+++..+ +.+++++|.++++++.|+++... .+++++.+|+.+.
T Consensus 113 ~~~~VLDLGcGt---------------G~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l 172 (340)
T PLN02490 113 RNLKVVDVGGGT---------------GFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL 172 (340)
T ss_pred CCCEEEEEecCC---------------cHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC
Confidence 456999999999 999999988775 57999999999999999987642 3578899998653
Q ss_pred HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597 199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
. + +.++||+|+.... ..+....++.+.+.|+|||.+++-
T Consensus 173 p--~----~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 173 P--F----PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred C--C----CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 1 1 1468999987542 334578899999999999998764
No 120
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.01 E-value=5.5e-09 Score=93.26 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=80.8
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
..++++|||+|||+ |..+..++.. +.+|+++|+++++++.|++++...+..+++++.++|+.
T Consensus 53 ~~~~~~vLDiGcG~---------------G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 53 PLKGKRVLDAGCGT---------------GLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred CCCCCEEEEEeCCC---------------CHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 34578999999999 9999998864 46999999999999999999998887778999999986
Q ss_pred hhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEec
Q 022597 197 DSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
+. .++||+|+.-. +.......+..+.+++++++++.+.+
T Consensus 115 ~~---------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 115 SL---------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP 158 (219)
T ss_pred hC---------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 53 36899997531 23345677888888888887777643
No 121
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.01 E-value=5.9e-11 Score=92.68 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=62.9
Q ss_pred EEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHh
Q 022597 124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 203 (294)
Q Consensus 124 LEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~ 203 (294)
||||||+ |..+..++...+ ..+++++|+|+.+++.|++++...+... ......+..+.....
T Consensus 1 LdiGcG~---------------G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~- 62 (99)
T PF08242_consen 1 LDIGCGT---------------GRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD- 62 (99)
T ss_dssp -EESTTT---------------S-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-
T ss_pred CEeCccC---------------hHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc-
Confidence 7999999 999999999884 8999999999999999999999877543 344443333332211
Q ss_pred hcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEE
Q 022597 204 LNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGII 240 (294)
Q Consensus 204 ~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~i 240 (294)
..++||+|+...- .++...+++.+.++|+|||++
T Consensus 63 ---~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 63 ---PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ---cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 1259999986532 366789999999999999986
No 122
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.01 E-value=7.4e-09 Score=92.27 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=76.3
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++.+|||+|||+ |..+..++.. +.+++++|+++++++.|++++...+..+++++..+|...
T Consensus 62 ~~~~~vLDvGcG~---------------G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 123 (230)
T PRK07580 62 LTGLRILDAGCGV---------------GSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES 123 (230)
T ss_pred CCCCEEEEEeCCC---------------CHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh
Confidence 4567999999999 9999998875 457999999999999999999988887789999988421
Q ss_pred hHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEE
Q 022597 198 SLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
. .++||+|+... +.......++.+.+++++++++.+
T Consensus 124 ----~-----~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 124 ----L-----LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred ----c-----cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 1 47899998642 234556777777777665555543
No 123
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.01 E-value=3.1e-09 Score=94.47 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=81.7
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
++..++.++||+|||. |.-++++|+. |-.|+++|.|+..++.+++..++.+++ |+....|
T Consensus 26 ~~~~~~g~~LDlgcG~---------------GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~D 85 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGE---------------GRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVAD 85 (192)
T ss_dssp CTTS-SSEEEEES-TT---------------SHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-B
T ss_pred HhhcCCCcEEEcCCCC---------------cHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEec
Confidence 4455677999999999 9999999986 689999999999999999999998886 8888888
Q ss_pred hhhhHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 195 AADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
..+.. + .+.||+|+.. ...+..+.+++.+...++|||++++...
T Consensus 86 l~~~~--~-----~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 86 LNDFD--F-----PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp GCCBS--------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred chhcc--c-----cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 75531 1 4689999863 2356678899999999999999988544
No 124
>PTZ00146 fibrillarin; Provisional
Probab=99.00 E-value=3e-09 Score=100.05 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=79.7
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
.+.+..+|||+|||+ |+.+..++....+.++|+++|+++++.+...+..+. ..+|.++.+|+
T Consensus 129 ~IkpG~~VLDLGaG~---------------G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da 190 (293)
T PTZ00146 129 PIKPGSKVLYLGAAS---------------GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDA 190 (293)
T ss_pred ccCCCCEEEEeCCcC---------------CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCc
Confidence 345677999999999 999999999987778999999998866554444432 24688999998
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid 243 (294)
....+ +.. ..+++|+||+|....+ ...+...+...|||||.+++.
T Consensus 191 ~~p~~-y~~--~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 191 RYPQK-YRM--LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred cChhh-hhc--ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 64211 100 1357999999986444 344556778899999999993
No 125
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.00 E-value=6.8e-09 Score=77.86 Aligned_cols=99 Identities=22% Similarity=0.352 Sum_probs=78.8
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
+++|+|||+ |..+..++. ....+++++|.+++..+.+++..+.. ...++++..+|..+....
T Consensus 1 ~ildig~G~---------------G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 62 (107)
T cd02440 1 RVLDLGCGT---------------GALALALAS--GPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPE 62 (107)
T ss_pred CeEEEcCCc---------------cHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccc
Confidence 489999999 988888877 34689999999999999888644333 345799999998776431
Q ss_pred HhhcCCCCceeEEEEcCC----ccchHHHHHHHHhcccCCeEEEEe
Q 022597 202 LILNGEASSYDFAFVDAE----KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 202 l~~~~~~~~fD~vfiD~~----~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
..++||+|+.+.. ......+++.+.+.|+|||.+++.
T Consensus 63 -----~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 63 -----ADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -----cCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 1478999998865 335688899999999999999876
No 126
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.00 E-value=2.7e-09 Score=96.07 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=76.5
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC--------------
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-------------- 184 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl-------------- 184 (294)
++.+|||+|||. |.-++++|.. +..||++|+++..++.+.+ ++|+
T Consensus 34 ~~~rvLd~GCG~---------------G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~ 92 (213)
T TIGR03840 34 AGARVFVPLCGK---------------SLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYR 92 (213)
T ss_pred CCCeEEEeCCCc---------------hhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeee
Confidence 456999999999 9999999974 6899999999999997533 3332
Q ss_pred CCcEEEEEcchhhhHHHHhhcCCCCceeEEEE-----cCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 185 SHKVKIKHGLAADSLKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfi-----D~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
..+|+++++|..+.-... .++||.|+- +.++.....+++.+.++|+|||++++...
T Consensus 93 ~~~v~~~~~D~~~~~~~~-----~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 93 AGNIEIFCGDFFALTAAD-----LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred cCceEEEEccCCCCCccc-----CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 246899999997653221 256777753 34466678899999999999998666544
No 127
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.98 E-value=8.7e-09 Score=91.60 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=82.8
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||+|||+ |..+..++.. +.+++++|+++++++.+++++...+.. ++++..+|+.+.
T Consensus 45 ~~~~vLdlG~G~---------------G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~ 105 (224)
T TIGR01983 45 FGLRVLDVGCGG---------------GLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDL 105 (224)
T ss_pred CCCeEEEECCCC---------------CHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHh
Confidence 366999999999 9998888774 357999999999999999999887664 588888888765
Q ss_pred HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.... .++||+|++... ..+...+++.+.+.|+|||.+++...
T Consensus 106 ~~~~-----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 106 AEKG-----AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hcCC-----CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 4321 368999987632 34567899999999999999988654
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.97 E-value=6.6e-09 Score=89.46 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=84.6
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...++.+|||+|||+ |..+..++.. +++++++|+|+.+++.+++++.. .++++++++|+
T Consensus 10 ~~~~~~~vLEiG~G~---------------G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~ 68 (169)
T smart00650 10 NLRPGDTVLEIGPGK---------------GALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDA 68 (169)
T ss_pred CCCCcCEEEEECCCc---------------cHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECch
Confidence 344556999999999 9999999876 47999999999999999998864 34799999999
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHh--cccCCeEEEEecccCCCcccCcc
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHGKVADQM 255 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~--lLkpgG~ivid~vl~~g~v~~~~ 255 (294)
.+.... ..+||.||.+.+-.-..+.+..+.+ .+.++|++++..-...--++.|.
T Consensus 69 ~~~~~~------~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~ 124 (169)
T smart00650 69 LKFDLP------KLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG 124 (169)
T ss_pred hcCCcc------ccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence 875321 3469999999874444566666654 34588999887655444445554
No 129
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.97 E-value=1.4e-08 Score=99.02 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHhhh-CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597 100 QMQVSPDQAQLLAMLVQIL-GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178 (294)
Q Consensus 100 ~~~v~~~~~~lL~~l~~~~-~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~ 178 (294)
.+....+...++....... +..+|||++||+ |..++.++...+ ..+|+++|.|++.++.+++|
T Consensus 37 ~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGs---------------G~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N 100 (382)
T PRK04338 37 RMELNRDISVLVLRAFGPKLPRESVLDALSAS---------------GIRGIRYALETG-VEKVTLNDINPDAVELIKKN 100 (382)
T ss_pred cccchhhHHHHHHHHHHhhcCCCEEEECCCcc---------------cHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHH
Confidence 3445555444444444322 335899999999 999999988764 45899999999999999999
Q ss_pred HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
++.+++. .+++..+|+.+.+.. .++||+|++|+. ..-.++++.+...+++||++.+.
T Consensus 101 ~~~N~~~-~~~v~~~Da~~~l~~------~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 101 LELNGLE-NEKVFNKDANALLHE------ERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HHHhCCC-ceEEEhhhHHHHHhh------cCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 9999986 478999999776642 257999999986 44567888888889999999985
No 130
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.97 E-value=4.2e-09 Score=96.89 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=88.9
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-----CcEEEEEeCChHHHHHHHHHHHHhCCCCc--EEE
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGVSHK--VKI 190 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-----~~~v~~id~~~~~~~~A~~~~~~~gl~~~--v~~ 190 (294)
....+|||+++|| |-.++.+....+. +++|+.+|+||+++.++++..++.++... +.+
T Consensus 99 ~~~m~~lDvaGGT---------------GDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w 163 (296)
T KOG1540|consen 99 GKGMKVLDVAGGT---------------GDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEW 163 (296)
T ss_pred CCCCeEEEecCCc---------------chhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEE
Confidence 3446999999999 9999999998864 28999999999999999999988888765 999
Q ss_pred EEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597 191 KHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+.+|+.+.. + ++.+||...+..+ ..+.+..++.+.+.|||||.+.+=
T Consensus 164 ~~~dAE~Lp--F----dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 164 VEGDAEDLP--F----DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred EeCCcccCC--C----CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999997653 2 3689999887765 456788999999999999998863
No 131
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.96 E-value=9e-09 Score=102.79 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHH--hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY 179 (294)
Q Consensus 102 ~v~~~~~~lL~~l~--~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~ 179 (294)
.++...+++...++ ...++.+|||++++. |.-|..++..+...+.|+++|+++..++..++++
T Consensus 94 yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAP---------------GgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl 158 (470)
T PRK11933 94 YIQEASSMLPVAALFADDNAPQRVLDMAAAP---------------GSKTTQIAALMNNQGAIVANEYSASRVKVLHANI 158 (470)
T ss_pred EEECHHHHHHHHHhccCCCCCCEEEEeCCCc---------------cHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 34555555555555 556788999999999 9999999999987789999999999999999999
Q ss_pred HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcc
Q 022597 180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLI 234 (294)
Q Consensus 180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lL 234 (294)
++.|+. ++.+...|+....+.+ .+.||.|++|++.. ...++++.+.++|
T Consensus 159 ~r~G~~-nv~v~~~D~~~~~~~~-----~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L 232 (470)
T PRK11933 159 SRCGVS-NVALTHFDGRVFGAAL-----PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL 232 (470)
T ss_pred HHcCCC-eEEEEeCchhhhhhhc-----hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999996 4889999987644333 46799999998721 0257788888999
Q ss_pred cCCeEEEEecccC
Q 022597 235 RVGGIIVIDNVLW 247 (294)
Q Consensus 235 kpgG~ivid~vl~ 247 (294)
||||+||.....+
T Consensus 233 kpGG~LVYSTCT~ 245 (470)
T PRK11933 233 KPGGTLVYSTCTL 245 (470)
T ss_pred CCCcEEEEECCCC
Confidence 9999999887743
No 132
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.96 E-value=1.1e-09 Score=98.67 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=85.7
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
.+....+.+|.|+|||+ |-+|-.+++..| ++.|+|+|.|++|++.|++.. .+++|..+
T Consensus 25 ~Vp~~~~~~v~DLGCGp---------------GnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~a 82 (257)
T COG4106 25 RVPLERPRRVVDLGCGP---------------GNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEA 82 (257)
T ss_pred hCCccccceeeecCCCC---------------CHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecc
Confidence 34455677999999999 999999999998 899999999999999887654 25889999
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
|..+.-+ +.+.|++|.++. -++-.+.|..+...|.|||++.+.
T Consensus 83 Dl~~w~p-------~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 83 DLRTWKP-------EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred cHhhcCC-------CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 9987643 568999999864 566788999999999999999874
No 133
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.96 E-value=5.9e-09 Score=93.42 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=74.1
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++.+|||+|||+ |..+..+++..++.++|++||+++. .+. ..++++++|+.+
T Consensus 50 ~~~~~VLDlG~Gt---------------G~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~ 102 (209)
T PRK11188 50 KPGMTVVDLGAAP---------------GGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRD 102 (209)
T ss_pred CCCCEEEEEcccC---------------CHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCC
Confidence 4567999999999 9999999998876789999999981 122 348999999876
Q ss_pred h--HHHHhhcCCCCceeEEEEcCCc-----c--c-------hHHHHHHHHhcccCCeEEEEe
Q 022597 198 S--LKALILNGEASSYDFAFVDAEK-----R--M-------YQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 198 ~--l~~l~~~~~~~~fD~vfiD~~~-----~--~-------~~~~~~~~~~lLkpgG~ivid 243 (294)
. ++.+...-..++||+|+.|... . + ....++.+.+.|+|||.+++.
T Consensus 103 ~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 103 ELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred hHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 3333222225789999987521 1 1 145788889999999999985
No 134
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.95 E-value=6.1e-09 Score=94.11 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=76.3
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC--------------
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-------------- 184 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl-------------- 184 (294)
++.+|||+|||. |.-++++|.. +..|+++|+++..++.+. ++.++
T Consensus 37 ~~~rvL~~gCG~---------------G~da~~LA~~---G~~V~avD~s~~Ai~~~~---~~~~l~~~~~~~~~~~~~~ 95 (218)
T PRK13255 37 AGSRVLVPLCGK---------------SLDMLWLAEQ---GHEVLGVELSELAVEQFF---AENGLTPQTRQSGEFEHYQ 95 (218)
T ss_pred CCCeEEEeCCCC---------------hHhHHHHHhC---CCeEEEEccCHHHHHHHH---HHcCCCccccccccccccc
Confidence 446999999999 9999999973 689999999999998763 23333
Q ss_pred CCcEEEEEcchhhhHHHHhhcCCCCceeEEE-----EcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 185 SHKVKIKHGLAADSLKALILNGEASSYDFAF-----VDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vf-----iD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
..+|++.++|..+..+.. .+.||+|+ +..++.....+++.+.++|+|||++++
T Consensus 96 ~~~v~~~~~D~~~l~~~~-----~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 96 AGEITIYCGDFFALTAAD-----LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cCceEEEECcccCCCccc-----CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 357899999998753321 35789987 344566788999999999999986444
No 135
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.95 E-value=5.5e-09 Score=103.68 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=82.2
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
+...++.+|||+|||+ |..+..++.. ..+|+++|+++++++.+++. .+..++++++.+|
T Consensus 33 l~~~~~~~vLDlGcG~---------------G~~~~~la~~---~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d 91 (475)
T PLN02336 33 LPPYEGKSVLELGAGI---------------GRFTGELAKK---AGQVIALDFIESVIKKNESI---NGHYKNVKFMCAD 91 (475)
T ss_pred cCccCCCEEEEeCCCc---------------CHHHHHHHhh---CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEec
Confidence 3344567999999999 9999999886 36899999999999877652 3344579999999
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597 195 AADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH 248 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~ 248 (294)
+.+....+ +.++||+|+.... .....++++.+.+.|+|||++++.+..+.
T Consensus 92 ~~~~~~~~----~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 92 VTSPDLNI----SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred ccccccCC----CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 85321111 2478999997643 22357889999999999999999766543
No 136
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.94 E-value=9.2e-09 Score=93.70 Aligned_cols=102 Identities=23% Similarity=0.322 Sum_probs=88.8
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 200 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~ 200 (294)
..+||||||. |...+.+|...| +..++|||+....+..|.+.+++.|+. ++.++++|+.+.+.
T Consensus 50 pi~lEIGfG~---------------G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~ 112 (227)
T COG0220 50 PIVLEIGFGM---------------GEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLD 112 (227)
T ss_pred cEEEEECCCC---------------CHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHH
Confidence 4799999999 999999999987 678999999999999999999999997 79999999999998
Q ss_pred HHhhcCCCCceeEEEE---cCC--ccc------hHHHHHHHHhcccCCeEEEE
Q 022597 201 ALILNGEASSYDFAFV---DAE--KRM------YQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 201 ~l~~~~~~~~fD~vfi---D~~--~~~------~~~~~~~~~~lLkpgG~ivi 242 (294)
.+.. +++.|-|++ |+| +++ +..+++.+.+.|+|||.+.+
T Consensus 113 ~~~~---~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 113 YLIP---DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred hcCC---CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 8864 347777765 555 122 78999999999999999986
No 137
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.94 E-value=1.1e-08 Score=85.32 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=75.9
Q ss_pred HHHHHHHHHh-hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597 107 QAQLLAMLVQ-ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 185 (294)
Q Consensus 107 ~~~lL~~l~~-~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~ 185 (294)
..+++..+.. ..+.++|||+|||+ |..+..++.. +.+++++|+++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~---------------G~~~~~l~~~---~~~~~g~D~~~~~~~~----------- 59 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGT---------------GSFLRALAKR---GFEVTGVDISPQMIEK----------- 59 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTT---------------SHHHHHHHHT---TSEEEEEESSHHHHHH-----------
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCC---------------CHHHHHHHHh---CCEEEEEECCHHHHhh-----------
Confidence 3455565664 45677999999999 9888888554 4599999999999876
Q ss_pred CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.++....-+..+... . .++||+|+.... ..+...+++.+.++|+|||++++....
T Consensus 60 ~~~~~~~~~~~~~~~-~-----~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 60 RNVVFDNFDAQDPPF-P-----DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp TTSEEEEEECHTHHC-H-----SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hhhhhhhhhhhhhhc-c-----ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 122222222222211 1 689999987643 346789999999999999999998875
No 138
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.93 E-value=1.6e-09 Score=99.83 Aligned_cols=100 Identities=16% Similarity=0.219 Sum_probs=79.4
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-----cEEEEEcc
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGL 194 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-----~v~~~~gd 194 (294)
+++|||+|||+ |..+..+|+. ++.|+|||.++++++.|++..+.....+ ++.+.+.+
T Consensus 90 g~~ilDvGCGg---------------GLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~ 151 (282)
T KOG1270|consen 90 GMKILDVGCGG---------------GLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTD 151 (282)
T ss_pred CceEEEeccCc---------------cccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcc
Confidence 45899999999 9999999986 5899999999999999999954433333 35566666
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
..+. .++||.|+.--- ..+.+++++.+.++|+|||.+++..+.
T Consensus 152 ~E~~---------~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 152 VEGL---------TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred hhhc---------ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 6543 577999986432 345689999999999999999998874
No 139
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.93 E-value=1e-08 Score=89.60 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=74.5
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
+..+.++++|||+|||+ |..+..++....+.++|+++|+++.+ +. .+++++++
T Consensus 27 ~~~i~~g~~VLDiG~Gt---------------G~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~ 79 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAP---------------GGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRG 79 (188)
T ss_pred hcccCCCCEEEEecCCC---------------CHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEe
Confidence 34445677999999999 99999888877657899999999964 12 35788888
Q ss_pred chhhh--HHHHhhcCCCCceeEEEEcCCc--------------cchHHHHHHHHhcccCCeEEEEe
Q 022597 194 LAADS--LKALILNGEASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 194 da~~~--l~~l~~~~~~~~fD~vfiD~~~--------------~~~~~~~~~~~~lLkpgG~ivid 243 (294)
|+.+. +..+......++||+|+.++.. ......++.+.+.|+|||.+++.
T Consensus 80 d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 80 DFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred eCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 87542 2222111224689999987521 01257888899999999999985
No 140
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.93 E-value=1.3e-08 Score=90.51 Aligned_cols=101 Identities=24% Similarity=0.362 Sum_probs=84.3
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
.+||||||. |...+.+|...| +..++|+|+....+..|.+.+.+.++. ++.++++|+...+..
T Consensus 20 l~lEIG~G~---------------G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~ 82 (195)
T PF02390_consen 20 LILEIGCGK---------------GEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRR 82 (195)
T ss_dssp EEEEET-TT---------------SHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHH
T ss_pred eEEEecCCC---------------CHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhh
Confidence 799999999 999999999987 889999999999999999999999986 699999999998887
Q ss_pred HhhcCCCCceeEEEEc---CC-c-----c--chHHHHHHHHhcccCCeEEEE
Q 022597 202 LILNGEASSYDFAFVD---AE-K-----R--MYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 202 l~~~~~~~~fD~vfiD---~~-~-----~--~~~~~~~~~~~lLkpgG~ivi 242 (294)
+.. ++++|.|++. ++ | + -..++++.+.+.|+|||.+.+
T Consensus 83 ~~~---~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 83 LFP---PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp HST---TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred ccc---CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 753 4789999775 43 1 1 157999999999999999865
No 141
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=2.9e-09 Score=102.03 Aligned_cols=104 Identities=21% Similarity=0.196 Sum_probs=87.8
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
.+.+|+|.-+|- |+.++.+|..-. .+|+++|+||..++..++|++.+++.++++.++||+.+.
T Consensus 188 ~GE~V~DmFAGV---------------Gpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev 250 (341)
T COG2520 188 EGETVLDMFAGV---------------GPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV 250 (341)
T ss_pred CCCEEEEccCCc---------------ccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh
Confidence 366777777776 777777777543 349999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.+.+ +.+|.|++..++ ...+++..+..++++||+|.++...
T Consensus 251 ~~~~------~~aDrIim~~p~-~a~~fl~~A~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 251 APEL------GVADRIIMGLPK-SAHEFLPLALELLKDGGIIHYYEFV 291 (341)
T ss_pred hhcc------ccCCEEEeCCCC-cchhhHHHHHHHhhcCcEEEEEecc
Confidence 7754 789999998865 3468889999999999999998874
No 142
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.92 E-value=3.8e-08 Score=94.88 Aligned_cols=123 Identities=19% Similarity=0.134 Sum_probs=90.6
Q ss_pred CCCCCCHHHHHHHH-HHHhhhC--CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHH
Q 022597 99 SQMQVSPDQAQLLA-MLVQILG--AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVA 175 (294)
Q Consensus 99 ~~~~v~~~~~~lL~-~l~~~~~--~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A 175 (294)
+..|+.+.+.+.|. ......+ +.+|||+|||+ |..++.++... .+|+++|.++++++.|
T Consensus 174 ~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~---------------G~~sl~la~~~---~~v~~vE~~~~av~~a 235 (353)
T TIGR02143 174 SFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGN---------------GNFSLALAQNF---RRVLATEIAKPSVNAA 235 (353)
T ss_pred CcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccc---------------cHHHHHHHHhC---CEEEEEECCHHHHHHH
Confidence 34567777655444 4444443 35799999999 99999888874 4899999999999999
Q ss_pred HHHHHHhCCCCcEEEEEcchhhhHHHHhhc-------C-C--CCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEe
Q 022597 176 KKYYERAGVSHKVKIKHGLAADSLKALILN-------G-E--ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 176 ~~~~~~~gl~~~v~~~~gda~~~l~~l~~~-------~-~--~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid 243 (294)
+++++.+|+. +++++.+|+.+.++..... + . ...||+||+|++... ..+.++.+.+ |++++++.
T Consensus 236 ~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 236 QYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred HHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence 9999999986 5999999998877642110 0 0 124899999998444 5566666654 67777764
No 143
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.92 E-value=1.9e-08 Score=92.53 Aligned_cols=105 Identities=22% Similarity=0.386 Sum_probs=83.5
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC---CCcEEEEEcch
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SHKVKIKHGLA 195 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl---~~~v~~~~gda 195 (294)
++++||-||.|. |.....+.+. ++-.+++.||+|++.++.|++++..... ++|++++.+|+
T Consensus 76 ~p~~VLiiGgG~---------------G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 76 NPKRVLIIGGGD---------------GGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp ST-EEEEEESTT---------------SHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred CcCceEEEcCCC---------------hhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 578999999998 8777777654 4457999999999999999999886432 47899999999
Q ss_pred hhhHHHHhhcCCCC-ceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEec
Q 022597 196 ADSLKALILNGEAS-SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 196 ~~~l~~l~~~~~~~-~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
...++.. .+ +||+|++|...+ .-.++++.+.+.|+|||++++..
T Consensus 140 ~~~l~~~-----~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 140 RKFLKET-----QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHTS-----SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhc-----cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9988765 34 899999997531 24799999999999999998764
No 144
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=1.1e-08 Score=95.02 Aligned_cols=122 Identities=19% Similarity=0.320 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHhhh------CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQIL------GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK 176 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~------~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~ 176 (294)
-.|++.+++.+.+... .+..++|+|||+ |..++.++..+| .++++++|.++.++..|.
T Consensus 126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGS---------------GaIslsll~~L~-~~~v~AiD~S~~Ai~La~ 189 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGS---------------GAISLSLLHGLP-QCTVTAIDVSKAAIKLAK 189 (328)
T ss_pred cCccHHHHHHHHHHHHhhhhhcccceEEEecCCc---------------cHHHHHHHhcCC-CceEEEEeccHHHHHHHH
Confidence 3678888888776543 345799999999 999999999998 899999999999999999
Q ss_pred HHHHHhCCCCcEEEEEc----chhhhHHHHhhcCCCCceeEEEEcCC--------------------------c---cch
Q 022597 177 KYYERAGVSHKVKIKHG----LAADSLKALILNGEASSYDFAFVDAE--------------------------K---RMY 223 (294)
Q Consensus 177 ~~~~~~gl~~~v~~~~g----da~~~l~~l~~~~~~~~fD~vfiD~~--------------------------~---~~~ 223 (294)
+|.+++++.+++.+++- |..+-.+.+ .+++|+++.+++ . ..+
T Consensus 190 eN~qr~~l~g~i~v~~~~me~d~~~~~~l~-----~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~ 264 (328)
T KOG2904|consen 190 ENAQRLKLSGRIEVIHNIMESDASDEHPLL-----EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNL 264 (328)
T ss_pred HHHHHHhhcCceEEEecccccccccccccc-----cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHH
Confidence 99999999999999854 433322222 588999976644 1 124
Q ss_pred HHHHHHHHhcccCCeEEEEecc
Q 022597 224 QEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 224 ~~~~~~~~~lLkpgG~ivid~v 245 (294)
..++..+.++|+|||.+.+.-+
T Consensus 265 ~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 265 VHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred HHHHHhhHhhcccCCeEEEEec
Confidence 5667777899999999998766
No 145
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.91 E-value=2.2e-08 Score=92.82 Aligned_cols=106 Identities=16% Similarity=0.268 Sum_probs=76.2
Q ss_pred CCCeEEEEccccccccccccccccCCCcHH----HHHHHHHCCC----CcEEEEEeCChHHHHHHHHHHH----HhC---
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYS----SLAIALVLPE----SGCLVACERDARSLEVAKKYYE----RAG--- 183 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~----sl~la~~~~~----~~~v~~id~~~~~~~~A~~~~~----~~g--- 183 (294)
++.+|+|+|||| |.- ++.++...+. +.+|+|+|+|+++++.|++.+- ..+
T Consensus 99 ~~~ri~d~GCgt---------------Gee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~ 163 (264)
T smart00138 99 RRVRIWSAGCST---------------GEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPK 163 (264)
T ss_pred CCEEEEeccccC---------------ChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCH
Confidence 345999999999 964 4444444432 5789999999999999998531 001
Q ss_pred -------------------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeE
Q 022597 184 -------------------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGI 239 (294)
Q Consensus 184 -------------------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ 239 (294)
+.++|+|..+|..+... +.++||+|+... +.+.....++.+.+.|+|||+
T Consensus 164 ~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~ 237 (264)
T smart00138 164 ALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGY 237 (264)
T ss_pred HHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeE
Confidence 23468888888876321 147899998742 234556899999999999999
Q ss_pred EEEecc
Q 022597 240 IVIDNV 245 (294)
Q Consensus 240 ivid~v 245 (294)
+++-..
T Consensus 238 L~lg~~ 243 (264)
T smart00138 238 LFLGHS 243 (264)
T ss_pred EEEECc
Confidence 998543
No 146
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.90 E-value=3.1e-08 Score=92.93 Aligned_cols=103 Identities=21% Similarity=0.317 Sum_probs=87.7
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C-CCcEEEEEcchh
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAA 196 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l-~~~v~~~~gda~ 196 (294)
+++||-||.|. |..+..+++..+ -.+++.||+|++.++.+++++.... . +.|++++.+|+.
T Consensus 77 pk~VLiiGgGd---------------G~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~ 140 (282)
T COG0421 77 PKRVLIIGGGD---------------GGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGV 140 (282)
T ss_pred CCeEEEECCCc---------------cHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHH
Confidence 36999999999 888888877654 6899999999999999999988643 2 479999999999
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCcc-c------hHHHHHHHHhcccCCeEEEEe
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKR-M------YQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~-~------~~~~~~~~~~lLkpgG~ivid 243 (294)
++++.. ..+||+|++|...+ . -.+|++.|.+.|+++|+++..
T Consensus 141 ~~v~~~-----~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 141 EFLRDC-----EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHhC-----CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 998875 45899999997533 2 489999999999999999986
No 147
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.90 E-value=2.6e-08 Score=96.88 Aligned_cols=124 Identities=14% Similarity=0.175 Sum_probs=97.7
Q ss_pred CCCCCCCHHHHHHHHH-HHhhhCC---CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH
Q 022597 98 GSQMQVSPDQAQLLAM-LVQILGA---QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE 173 (294)
Q Consensus 98 ~~~~~v~~~~~~lL~~-l~~~~~~---~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~ 173 (294)
.+.|...+|..-++.. +....+. -+|||..||+ |.-++.++...+...+|+++|+|++.++
T Consensus 19 NP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGs---------------G~rgir~a~e~~ga~~Vv~nD~n~~Av~ 83 (374)
T TIGR00308 19 NPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSAS---------------GIRAIRYAHEIEGVREVFANDINPKAVE 83 (374)
T ss_pred CchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCch---------------hHHHHHHHhhCCCCCEEEEEeCCHHHHH
Confidence 3455566665444332 2233333 3899999999 9999999887543468999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 174 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 174 ~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+++|++.+++. ++++.++|+...+... ..+||+|++|+. ....++++.+.+.+++||++.+.
T Consensus 84 ~i~~N~~~N~~~-~~~v~~~Da~~~l~~~-----~~~fDvIdlDPf-Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 84 SIKNNVEYNSVE-NIEVPNEDAANVLRYR-----NRKFHVIDIDPF-GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHHHHHHHhCCC-cEEEEchhHHHHHHHh-----CCCCCEEEeCCC-CCcHHHHHHHHHhcccCCEEEEE
Confidence 999999999886 5899999998887654 467999999994 44468999999999999999986
No 148
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=98.90 E-value=1.1e-08 Score=91.82 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHH---CCCCcEEEEEeCChHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALV---LPESGCLVACERDARSLEVAKKY 178 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~---~~~~~~v~~id~~~~~~~~A~~~ 178 (294)
.-.|..--.+..++...+|+.|+|+|+.. |.|.+++|.. +...++|++||++.+... ++.
T Consensus 15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~---------------GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a 77 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWELKPDLIIETGIAH---------------GGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKA 77 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--SEEEEE--TT---------------SHHHHHHHHHHHHTT---EEEEEES-GTT----S-G
T ss_pred hcCHHHHHHHHHHHHHhCCCeEEEEecCC---------------CchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHH
Confidence 34566677788888899999999999999 9999988754 345799999999765432 234
Q ss_pred HHHhCCCCcEEEEEcchhhhH--HHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecccCCCcccC-
Q 022597 179 YERAGVSHKVKIKHGLAADSL--KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD- 253 (294)
Q Consensus 179 ~~~~gl~~~v~~~~gda~~~l--~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~- 253 (294)
++...+.++|++++||..+.- .............+|+.|+. ..+...-|+...+++++|+++|+.|..+...-..
T Consensus 78 ~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~ 157 (206)
T PF04989_consen 78 IESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESW 157 (206)
T ss_dssp GGG----TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-
T ss_pred HhhccccCceEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecccccccccc
Confidence 455667789999999986532 22211111345679999986 4567788888999999999999988764433222
Q ss_pred ---ccc--CCcchHHHHHHHHHhhhCCCeEE
Q 022597 254 ---QMV--NDAKTISIRNFNKNLMEDERVSI 279 (294)
Q Consensus 254 ---~~~--~~~~~~~ir~f~~~l~~~~~~~~ 279 (294)
+.. .+....++++| ++++++|++
T Consensus 158 ~~~~~w~~g~~p~~av~~f---L~~~~~f~i 185 (206)
T PF04989_consen 158 FPDRPWGPGNNPKTAVKEF---LAEHPDFEI 185 (206)
T ss_dssp ------------HHHHHHH---HHTTTTEEE
T ss_pred ccccchhhhhHHHHHHHHH---HHHCCCcEe
Confidence 111 12233455655 667777654
No 149
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.89 E-value=2e-08 Score=88.43 Aligned_cols=122 Identities=19% Similarity=0.346 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhhh-------CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597 105 PDQAQLLAMLVQIL-------GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK 177 (294)
Q Consensus 105 ~~~~~lL~~l~~~~-------~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~ 177 (294)
..+.+++.++.... .+.+|||+|||. |..-..++..- -.+.++++|.+++.++.|+.
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGN---------------G~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~n 109 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGN---------------GHLLFQLAKEG-FQSKLTGVDYSEKAVELAQN 109 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCc---------------hHHHHHHHHhc-CCCCccccccCHHHHHHHHH
Confidence 33445555554322 244999999999 98888887753 24669999999999999999
Q ss_pred HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEE---------EcCC--ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 178 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF---------VDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 178 ~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vf---------iD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
..++.|+++.|+|.+.|..+- ... .++||+|. +.+. .....-|+..+.++|+|||+++|..+.
T Consensus 110 iAe~~~~~n~I~f~q~DI~~~-~~~-----~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 110 IAERDGFSNEIRFQQLDITDP-DFL-----SGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred HHHhcCCCcceeEEEeeccCC-ccc-----ccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 999999999999999888653 111 46677764 2222 223356777888999999999999886
Q ss_pred CC
Q 022597 247 WH 248 (294)
Q Consensus 247 ~~ 248 (294)
|.
T Consensus 184 ~T 185 (227)
T KOG1271|consen 184 FT 185 (227)
T ss_pred cc
Confidence 64
No 150
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.88 E-value=1.1e-08 Score=91.53 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=77.5
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
+++.|+|..||. |+.++.+|+..+ ...|+++|+||..++.++++++.+++.++++++++|+.+.
T Consensus 101 ~~e~VlD~faGI---------------G~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~ 164 (200)
T PF02475_consen 101 PGEVVLDMFAGI---------------GPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF 164 (200)
T ss_dssp TT-EEEETT-TT---------------TTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-
T ss_pred cceEEEEccCCc---------------cHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh
Confidence 456999999999 999999998543 6789999999999999999999999999999999999988
Q ss_pred HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597 199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv 241 (294)
++ .+.+|.|+++.++.. .+|++.+..++++||++-
T Consensus 165 ~~-------~~~~drvim~lp~~~-~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 165 LP-------EGKFDRVIMNLPESS-LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---------TT-EEEEEE--TSSG-GGGHHHHHHHEEEEEEEE
T ss_pred cC-------ccccCEEEECChHHH-HHHHHHHHHHhcCCcEEE
Confidence 76 378999999886543 478999999999999874
No 151
>PLN02672 methionine S-methyltransferase
Probab=98.88 E-value=2.6e-08 Score=107.52 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=82.5
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC--------------
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-------------- 185 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~-------------- 185 (294)
+++|||+|||+ |+.++.++...+ .++|+++|+|+++++.|++|++.++++
T Consensus 119 ~~~VLDlG~GS---------------G~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l 182 (1082)
T PLN02672 119 DKTVAELGCGN---------------GWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTL 182 (1082)
T ss_pred CCEEEEEecch---------------HHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccc
Confidence 45899999999 999999999876 579999999999999999999987542
Q ss_pred -CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--------------c-----------------------c----ch
Q 022597 186 -HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--------------K-----------------------R----MY 223 (294)
Q Consensus 186 -~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--------------~-----------------------~----~~ 223 (294)
++++++++|..+.++.. ..+||+|+.+++ . . .|
T Consensus 183 ~~rV~f~~sDl~~~~~~~-----~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~y 257 (1082)
T PLN02672 183 LDRVEFYESDLLGYCRDN-----NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLI 257 (1082)
T ss_pred cccEEEEECchhhhcccc-----CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHH
Confidence 57999999997755321 247999987654 0 0 03
Q ss_pred HHHHHHHHhcccCCeEEEEec
Q 022597 224 QEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 224 ~~~~~~~~~lLkpgG~ivid~ 244 (294)
..+++.+.+.|+|||.+++.-
T Consensus 258 r~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEE
Confidence 556666778999999998753
No 152
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.87 E-value=9.3e-09 Score=91.51 Aligned_cols=143 Identities=16% Similarity=0.190 Sum_probs=92.9
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
-.++||+|||. |..|..++... .+++++|.++..++.|++.... . .+|++.+++..+..
T Consensus 44 y~~alEvGCs~---------------G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~-~~V~~~~~dvp~~~ 102 (201)
T PF05401_consen 44 YRRALEVGCSI---------------GVLTERLAPRC---DRLLAVDISPRALARARERLAG--L-PHVEWIQADVPEFW 102 (201)
T ss_dssp EEEEEEE--TT---------------SHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT--
T ss_pred cceeEecCCCc---------------cHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--C-CCeEEEECcCCCCC
Confidence 35899999999 99999998874 5899999999999999998864 3 46999999987654
Q ss_pred HHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchH-HHHHHHHHhh
Q 022597 200 KALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI-SIRNFNKNLM 272 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~-~ir~f~~~l~ 272 (294)
+ .++||+|++..- ......+++.+...|+|||.+|+-..- -......-...... -++-|++.+.
T Consensus 103 P-------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r--d~~c~~wgh~~ga~tv~~~~~~~~~ 173 (201)
T PF05401_consen 103 P-------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR--DANCRRWGHAAGAETVLEMLQEHLT 173 (201)
T ss_dssp --------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE---HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred C-------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CCcccccCcccchHHHHHHHHHHhh
Confidence 3 689999987632 345667888999999999999985431 10000000011122 3455677777
Q ss_pred hCCCeEEEEeecCCceEEEE
Q 022597 273 EDERVSISMVPIGDGMTICQ 292 (294)
Q Consensus 273 ~~~~~~~~~lp~gdGl~i~~ 292 (294)
+-+++++.--..+..-.+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 174 EVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp EEEEEEEE-SSTTSEEEEEE
T ss_pred heeEEEEcCCCCCCceEeee
Confidence 77777766555555544443
No 153
>PHA03412 putative methyltransferase; Provisional
Probab=98.84 E-value=6.5e-08 Score=88.62 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=86.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC--CCcEEEEEeCChHHHHHHH
Q 022597 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP--ESGCLVACERDARSLEVAK 176 (294)
Q Consensus 99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~--~~~~v~~id~~~~~~~~A~ 176 (294)
.+...++..++.+.. ....+.+|||+|||+ |..++.+++..+ +..+|+++|+|+.+++.|+
T Consensus 31 GqFfTP~~iAr~~~i--~~~~~grVLDlG~GS---------------G~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar 93 (241)
T PHA03412 31 GAFFTPIGLARDFTI--DACTSGSVVDLCAGI---------------GGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK 93 (241)
T ss_pred CccCCCHHHHHHHHH--hccCCCEEEEccChH---------------HHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH
Confidence 344566666665532 233467999999999 999999988653 3579999999999999999
Q ss_pred HHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----cc----------hHHHHHHHHhcccCCeEEE
Q 022597 177 KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RM----------YQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 177 ~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----~~----------~~~~~~~~~~lLkpgG~iv 241 (294)
+++. ++.++.+|..+.. + .++||+|+.+++- .+ ...+++.+.+++++|+.|+
T Consensus 94 ~n~~------~~~~~~~D~~~~~--~-----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 94 RIVP------EATWINADALTTE--F-----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred hhcc------CCEEEEcchhccc--c-----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 8753 4788898886532 1 4689999998761 11 3457778888888888866
Q ss_pred Eeccc
Q 022597 242 IDNVL 246 (294)
Q Consensus 242 id~vl 246 (294)
=.+++
T Consensus 161 P~~~~ 165 (241)
T PHA03412 161 PQMSA 165 (241)
T ss_pred Ccccc
Confidence 56555
No 154
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.4e-07 Score=81.96 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=78.5
Q ss_pred CCCCHHHHHHHHHHHhh---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597 101 MQVSPDQAQLLAMLVQI---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK 177 (294)
Q Consensus 101 ~~v~~~~~~lL~~l~~~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~ 177 (294)
....+..+.-+.+.+.. ..++.|+|+|||| |..++..+..- ..+|+++|+|+++++.+++
T Consensus 24 Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GT---------------G~La~ga~~lG--a~~V~~vdiD~~a~ei~r~ 86 (198)
T COG2263 24 YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGT---------------GILAIGAALLG--ASRVLAVDIDPEALEIARA 86 (198)
T ss_pred cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCc---------------CHHHHHHHhcC--CcEEEEEecCHHHHHHHHH
Confidence 34455555555555543 3557899999999 98888776643 4799999999999999999
Q ss_pred HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----cchHHHHHHHHhc
Q 022597 178 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQL 233 (294)
Q Consensus 178 ~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----~~~~~~~~~~~~l 233 (294)
|.++ +..++.+..+|..+. .+.+|.++.+++. ..=..+++.+++.
T Consensus 87 N~~~--l~g~v~f~~~dv~~~---------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 87 NAEE--LLGDVEFVVADVSDF---------RGKFDTVIMNPPFGSQRRHADRPFLLKALEI 136 (198)
T ss_pred HHHh--hCCceEEEEcchhhc---------CCccceEEECCCCccccccCCHHHHHHHHHh
Confidence 9999 445799999999876 6899999999872 2224555555543
No 155
>PRK06202 hypothetical protein; Provisional
Probab=98.82 E-value=2.7e-08 Score=89.67 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=77.2
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC---CCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597 108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGV 184 (294)
Q Consensus 108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~---~~~~v~~id~~~~~~~~A~~~~~~~gl 184 (294)
.+++...+...++.+|||+|||+ |..+..++...+ ++.+|+++|+++++++.|++.....+
T Consensus 49 ~~~~~~~l~~~~~~~iLDlGcG~---------------G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~- 112 (232)
T PRK06202 49 RRLLRPALSADRPLTLLDIGCGG---------------GDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG- 112 (232)
T ss_pred HHHHHHhcCCCCCcEEEEeccCC---------------CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC-
Confidence 34444444445677999999999 999988886542 34699999999999999988765433
Q ss_pred CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597 185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
+++..+++.+. +. ..++||+|++... .....++++.+.+.++ |.+++.+...
T Consensus 113 ---~~~~~~~~~~l-~~-----~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 113 ---VTFRQAVSDEL-VA-----EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred ---CeEEEEecccc-cc-----cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 45555554332 11 1578999987532 2234578888888887 5566665543
No 156
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.79 E-value=9.7e-08 Score=83.09 Aligned_cols=110 Identities=21% Similarity=0.412 Sum_probs=74.4
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--CCCcEEEEEc
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHG 193 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l~~~v~~~~g 193 (294)
...++++|||+|||+ |..++.++... ...+|+..|.++ .++..+.+++.++ ...++++..-
T Consensus 42 ~~~~~~~VLELGaG~---------------Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L 104 (173)
T PF10294_consen 42 ELFRGKRVLELGAGT---------------GLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL 104 (173)
T ss_dssp GGTTTSEEEETT-TT---------------SHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE-
T ss_pred hhcCCceEEEECCcc---------------chhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEE
Confidence 356778999999999 99999999874 368999999999 9999999999987 6678888887
Q ss_pred chhhhH-HHHhhcCCCCceeEEEE-cC--CccchHHHHHHHHhcccCCeEEEEecc
Q 022597 194 LAADSL-KALILNGEASSYDFAFV-DA--EKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 194 da~~~l-~~l~~~~~~~~fD~vfi-D~--~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+..+.. +... +..+||+|+. |. ....+..+++.+..+|+++|.+++..-
T Consensus 105 ~Wg~~~~~~~~---~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 105 DWGDELDSDLL---EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -TTS-HHHHHH---S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EecCccccccc---ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 765533 2222 1468999985 43 367789999999999999988665443
No 157
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.78 E-value=1.3e-07 Score=90.21 Aligned_cols=145 Identities=17% Similarity=0.288 Sum_probs=97.3
Q ss_pred ccccccccccCCChhHHHHHHhc--------CCChHHHHHHHHHHHcCC-CCC-------CCCC--HHHHHHHHHHHhhh
Q 022597 57 DEKYSNKQVISVTPPLYDYILRN--------VREPEILRQLREETAGMR-GSQ-------MQVS--PDQAQLLAMLVQIL 118 (294)
Q Consensus 57 ~~~~~~~~~~~l~~~l~~Y~~~~--------~~~~~~L~~~~~~~~~~~-~~~-------~~v~--~~~~~lL~~l~~~~ 118 (294)
.+.|+-.......|++.+|+..+ ...++.+.++-+.-..+. +-. .... |.-...+.++...+
T Consensus 23 ~~~~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll 102 (321)
T PRK11727 23 RGRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLL 102 (321)
T ss_pred CCCCCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHh
Confidence 33455555566788999999763 234667777766543321 111 1111 33455555554442
Q ss_pred -----------CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh-CCCC
Q 022597 119 -----------GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSH 186 (294)
Q Consensus 119 -----------~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~-gl~~ 186 (294)
...++||||||+ |.....++...+ +.+++++|+|++.++.|+++++.+ ++.+
T Consensus 103 ~~~~~~~~p~~~~~~vLDIGtGa---------------g~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~ 166 (321)
T PRK11727 103 AEDNGGVIPRGANVRVLDIGVGA---------------NCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNG 166 (321)
T ss_pred cccccccCCCCCCceEEEecCCc---------------cHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcC
Confidence 346999999999 877777777655 789999999999999999999999 8999
Q ss_pred cEEEEE-cchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 187 KVKIKH-GLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 187 ~v~~~~-gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
+|++++ .+..+....+.. ..++||+|+.+++
T Consensus 167 ~I~~~~~~~~~~i~~~i~~--~~~~fDlivcNPP 198 (321)
T PRK11727 167 AIRLRLQKDSKAIFKGIIH--KNERFDATLCNPP 198 (321)
T ss_pred cEEEEEccchhhhhhcccc--cCCceEEEEeCCC
Confidence 999975 344444333211 2468999999876
No 158
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.6e-08 Score=90.72 Aligned_cols=119 Identities=22% Similarity=0.239 Sum_probs=94.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178 (294)
Q Consensus 99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~ 178 (294)
.++...||.+. +-++..+.++.+|+|-|+|+ |..+.++++++.+.|++++.|.+....+.|++-
T Consensus 86 TQI~Yt~Dia~-I~~~L~i~PGsvV~EsGTGS---------------GSlShaiaraV~ptGhl~tfefH~~Ra~ka~ee 149 (314)
T KOG2915|consen 86 TQILYTPDIAM-ILSMLEIRPGSVVLESGTGS---------------GSLSHAIARAVAPTGHLYTFEFHETRAEKALEE 149 (314)
T ss_pred ceEEecccHHH-HHHHhcCCCCCEEEecCCCc---------------chHHHHHHHhhCcCcceEEEEecHHHHHHHHHH
Confidence 34556777654 45556788899999999999 999999999999899999999999999999999
Q ss_pred HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeE
Q 022597 179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI 239 (294)
Q Consensus 179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ 239 (294)
+++.|+.+++++.+.|....-.... ...+|.||+|.+.+ ...+..+.+.||.+|.
T Consensus 150 Fr~hgi~~~vt~~hrDVc~~GF~~k----s~~aDaVFLDlPaP--w~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 150 FREHGIGDNVTVTHRDVCGSGFLIK----SLKADAVFLDLPAP--WEAIPHAAKILKDEGG 204 (314)
T ss_pred HHHhCCCcceEEEEeecccCCcccc----ccccceEEEcCCCh--hhhhhhhHHHhhhcCc
Confidence 9999999999999999865422111 46899999997532 3344455556776663
No 159
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.75 E-value=1.4e-07 Score=82.68 Aligned_cols=121 Identities=15% Similarity=0.198 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc--------EEEEEeCChHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG--------CLVACERDARSLE 173 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~--------~v~~id~~~~~~~ 173 (294)
.+.|..+..|..++...++..++|--||+ |...+..+.....-. +++|+|+++++++
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGs---------------GtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~ 75 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGS---------------GTILIEAALMGANIPPLNDINELKIIGSDIDPKAVR 75 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TT---------------SHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCC---------------CHHHHHHHHHhhCcccccccccccEEecCCCHHHHH
Confidence 57888999999999988888999999999 888777666544222 3899999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----------cchHHHHHHHHhcccCCeEEEE
Q 022597 174 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 174 ~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----------~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.|++|++.+|+.+.+.+...|+.+.. + ..+++|.|+.|++. .-|.++++.+.+.+++..++++
T Consensus 76 ~a~~N~~~ag~~~~i~~~~~D~~~l~--~----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 76 GARENLKAAGVEDYIDFIQWDARELP--L----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp HHHHHHHHTT-CGGEEEEE--GGGGG--G----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred HHHHHHHhcccCCceEEEecchhhcc--c----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 99999999999999999999998764 1 15799999999872 2377888888899999766665
Q ss_pred e
Q 022597 243 D 243 (294)
Q Consensus 243 d 243 (294)
.
T Consensus 150 ~ 150 (179)
T PF01170_consen 150 T 150 (179)
T ss_dssp E
T ss_pred E
Confidence 4
No 160
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.3e-07 Score=89.64 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYE 180 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~ 180 (294)
.++...+++.+.++...++.+|||..++. |.=|..++..+.. ++.|+++|.++..++..+++++
T Consensus 139 ~vQd~sS~l~a~~L~p~pge~VlD~cAAP---------------GGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~ 203 (355)
T COG0144 139 YVQDEASQLPALVLDPKPGERVLDLCAAP---------------GGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK 203 (355)
T ss_pred EEcCHHHHHHHHHcCCCCcCEEEEECCCC---------------CCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH
Confidence 45566677777788888999999999999 9999999998875 4566999999999999999999
Q ss_pred HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhccc
Q 022597 181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIR 235 (294)
Q Consensus 181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLk 235 (294)
+.|+.+ +.+...|+........ ..++||.|++|++.. -..++++.++++||
T Consensus 204 RlG~~n-v~~~~~d~~~~~~~~~---~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk 279 (355)
T COG0144 204 RLGVRN-VIVVNKDARRLAELLP---GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK 279 (355)
T ss_pred HcCCCc-eEEEeccccccccccc---ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999986 8888888765433321 123699999997610 14578888889999
Q ss_pred CCeEEEEecccC
Q 022597 236 VGGIIVIDNVLW 247 (294)
Q Consensus 236 pgG~ivid~vl~ 247 (294)
|||.++...+-.
T Consensus 280 ~GG~LVYSTCS~ 291 (355)
T COG0144 280 PGGVLVYSTCSL 291 (355)
T ss_pred CCCEEEEEccCC
Confidence 999999998843
No 161
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=4.6e-08 Score=87.74 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=76.3
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCC--CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE-EEEcchhh
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAAD 197 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~--~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~-~~~gda~~ 197 (294)
..+||||||| |..= .-++ +..+||++|+++.+-++|.+.++++... ++. |+.++..+
T Consensus 78 ~~vLEvgcGt---------------G~Nf----kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~ 137 (252)
T KOG4300|consen 78 GDVLEVGCGT---------------GANF----KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGEN 137 (252)
T ss_pred cceEEecccC---------------CCCc----ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhc
Confidence 3689999999 7432 2233 5899999999999999999999988554 466 88888865
Q ss_pred hHHHHhhcCCCCceeEEEEc---CCccchHHHHHHHHhcccCCeEEEE
Q 022597 198 SLKALILNGEASSYDFAFVD---AEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD---~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
++++. +++||.|+.- ...++..+.+..+.++|||||.+++
T Consensus 138 -l~~l~----d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 138 -LPQLA----DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred -Ccccc----cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 44442 6899998543 4467788899999999999999986
No 162
>PRK05785 hypothetical protein; Provisional
Probab=98.71 E-value=1e-07 Score=86.28 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=68.7
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||+|||| |..+..++... +++|+++|+++++++.|++. ...+++|+.+.
T Consensus 51 ~~~~VLDlGcGt---------------G~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l 104 (226)
T PRK05785 51 RPKKVLDVAAGK---------------GELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL 104 (226)
T ss_pred CCCeEEEEcCCC---------------CHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC
Confidence 356999999999 99999988865 47999999999999998763 13457777643
Q ss_pred HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCe
Q 022597 199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGG 238 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG 238 (294)
+ + .+++||.|++... ..+....++.+.+.|||.+
T Consensus 105 -p-~----~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 -P-F----RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -C-C----CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 2 1 2689999987543 4567889999999999954
No 163
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.70 E-value=3.7e-08 Score=89.75 Aligned_cols=111 Identities=21% Similarity=0.310 Sum_probs=85.9
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCC-CCcEEEEEc
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV-SHKVKIKHG 193 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl-~~~v~~~~g 193 (294)
...++.+|||.++|- ||.++..++. ++ +|+++|.||..++.|+-|--..++ +.++++++|
T Consensus 131 ~~~~G~rVLDtC~GL---------------GYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilG 192 (287)
T COG2521 131 KVKRGERVLDTCTGL---------------GYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILG 192 (287)
T ss_pred ccccCCEeeeeccCc---------------cHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecc
Confidence 344678999999999 9999887764 45 999999999999888765333233 235899999
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCc-----c-chHHHHHHHHhcccCCeEEEEecccCCC
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEK-----R-MYQEYFELLLQLIRVGGIIVIDNVLWHG 249 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~-----~-~~~~~~~~~~~lLkpgG~ivid~vl~~g 249 (294)
|+.+.++.+. +++||+|+.|++. + .-.++++.+.+.|+|||.++ |-+--+|
T Consensus 193 D~~e~V~~~~----D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF-HYvG~Pg 249 (287)
T COG2521 193 DAYEVVKDFD----DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF-HYVGNPG 249 (287)
T ss_pred cHHHHHhcCC----ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE-EEeCCCC
Confidence 9999998873 6789999999872 2 24688899999999999874 5553333
No 164
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.70 E-value=1.7e-07 Score=81.61 Aligned_cols=126 Identities=21% Similarity=0.144 Sum_probs=103.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597 98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK 177 (294)
Q Consensus 98 ~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~ 177 (294)
|+....++-.++.|+..+....+..|||+|.|| |..|-++++..-+...++++|.|++......+
T Consensus 27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGT---------------GV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~ 91 (194)
T COG3963 27 GAILPSSSILARKMASVIDPESGLPVLELGPGT---------------GVITKAILSRGVRPESLTAIEYSPDFVCHLNQ 91 (194)
T ss_pred eeecCCcHHHHHHHHhccCcccCCeeEEEcCCc---------------cHhHHHHHhcCCCccceEEEEeCHHHHHHHHH
Confidence 566778889999999999999999999999999 99999999887667899999999999988777
Q ss_pred HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 178 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 178 ~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+. .++++.||+.+.-..+.+. ....||.|+...+ .....++++.++..|++||.++--..
T Consensus 92 ~~p------~~~ii~gda~~l~~~l~e~-~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 92 LYP------GVNIINGDAFDLRTTLGEH-KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred hCC------CccccccchhhHHHHHhhc-CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 653 4679999998754334322 2568999997755 34467899999999999999987555
No 165
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.70 E-value=9.2e-07 Score=82.94 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
.+.....++...++...++.+|||.+++. |.=+..++..+...+.++++|++++.+...++++++
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAap---------------GgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r 132 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMCAAP---------------GGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR 132 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESSCTT---------------SHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred EecccccccccccccccccccccccccCC---------------CCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh
Confidence 44555566667777788888999999999 999999999998789999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcc--
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLI-- 234 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lL-- 234 (294)
.|... +.+...|+....+... ...||.|++|++.. ...+.++.+.+++
T Consensus 133 ~g~~~-v~~~~~D~~~~~~~~~----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~ 207 (283)
T PF01189_consen 133 LGVFN-VIVINADARKLDPKKP----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNI 207 (283)
T ss_dssp TT-SS-EEEEESHHHHHHHHHH----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHH
T ss_pred cCCce-EEEEeecccccccccc----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcc
Confidence 99874 7777788887655442 34699999997610 1356788888999
Q ss_pred --cCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecC
Q 022597 235 --RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIG 285 (294)
Q Consensus 235 --kpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~g 285 (294)
+|||.+|....-..- ......++.|.+ ++|.++..-.+..
T Consensus 208 ~~k~gG~lvYsTCS~~~--------eENE~vV~~fl~---~~~~~~l~~~~~~ 249 (283)
T PF01189_consen 208 DFKPGGRLVYSTCSLSP--------EENEEVVEKFLK---RHPDFELVPIPLP 249 (283)
T ss_dssp HBEEEEEEEEEESHHHG--------GGTHHHHHHHHH---HSTSEEEECCESS
T ss_pred cccCCCeEEEEeccHHH--------HHHHHHHHHHHH---hCCCcEEEecccc
Confidence 999999988773211 122335566644 5666665544443
No 166
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.69 E-value=3.9e-08 Score=85.30 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=58.2
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
.|+|..||. |.-++.+|+.. .+|++||+|+..++.|+.|++-.|+.++|++++||+.+.++.
T Consensus 2 ~vlD~fcG~---------------GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~ 63 (163)
T PF09445_consen 2 TVLDAFCGV---------------GGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR 63 (163)
T ss_dssp EEEETT-TT---------------SHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG
T ss_pred EEEEeccCc---------------CHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh
Confidence 689999988 99999999974 589999999999999999999999999999999999987665
Q ss_pred HhhcCCCCceeEEEEcCCc
Q 022597 202 LILNGEASSYDFAFVDAEK 220 (294)
Q Consensus 202 l~~~~~~~~fD~vfiD~~~ 220 (294)
+.. ...+|+||+++++
T Consensus 64 ~~~---~~~~D~vFlSPPW 79 (163)
T PF09445_consen 64 LKS---NKIFDVVFLSPPW 79 (163)
T ss_dssp B---------SEEEE---B
T ss_pred ccc---cccccEEEECCCC
Confidence 421 1128999999874
No 167
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.69 E-value=1.4e-07 Score=88.97 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=82.8
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
+..+.+++|||||||. ||-+..++..- ...|+|+|.++...-+.+-.-+-.|...++... ..
T Consensus 111 l~~L~gk~VLDIGC~n---------------GY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-pl 172 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNN---------------GYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PL 172 (315)
T ss_pred hCCcCCCEEEEecCCC---------------cHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Cc
Confidence 3456889999999999 99999998864 368999999999877655544445554434443 22
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~ 250 (294)
..+.++. .+.||.||.-+- .++....+..+...|++||.+|++.....|.
T Consensus 173 gvE~Lp~------~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 173 GVEDLPN------LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred chhhccc------cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 3333332 378999997543 4567788999999999999999998877664
No 168
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.69 E-value=2.8e-07 Score=87.80 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=70.4
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC----CCcEEEEEcc
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGL 194 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl----~~~v~~~~gd 194 (294)
++.+|||+|||+ |..++.++.. +.+|+++|+++++++.|+++++..+. ..++++..+|
T Consensus 144 ~~~~VLDlGcGt---------------G~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 144 AGVTVCDAGCGT---------------GSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred CCCEEEEecCCC---------------CHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 467999999999 9999998874 57999999999999999999887532 2357888888
Q ss_pred hhhhHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEE
Q 022597 195 AADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
..+. .++||+|+.- .+.......++.+.. +.+||+++.
T Consensus 206 l~~l---------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 206 LESL---------SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred hhhc---------CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 6432 4789998743 222233455555554 467777664
No 169
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=3.8e-07 Score=90.37 Aligned_cols=123 Identities=21% Similarity=0.234 Sum_probs=96.8
Q ss_pred CCCCCCCHHHHHHHHHHH----hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH
Q 022597 98 GSQMQVSPDQAQLLAMLV----QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE 173 (294)
Q Consensus 98 ~~~~~v~~~~~~lL~~l~----~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~ 173 (294)
.+..|+.+.+++-|...+ +..+..+++|+-||. |..++.+|.. ..+|+|+|+++++++
T Consensus 268 ~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGv---------------G~f~l~lA~~---~~~V~gvEi~~~aV~ 329 (432)
T COG2265 268 RSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGV---------------GTFGLPLAKR---VKKVHGVEISPEAVE 329 (432)
T ss_pred CCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCC---------------Chhhhhhccc---CCEEEEEecCHHHHH
Confidence 366788888877666654 334557999999999 9999999854 479999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchH-HHHHHHHhcccCCeEEEEe
Q 022597 174 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 174 ~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~-~~~~~~~~lLkpgG~ivid 243 (294)
.|+++++.+|+.+ ++|..+++.+..+... ....+|.|++|++..... ++++.+ ..++|-.++.+.
T Consensus 330 ~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~---~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 330 AAQENAAANGIDN-VEFIAGDAEEFTPAWW---EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred HHHHHHHHcCCCc-EEEEeCCHHHHhhhcc---ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 9999999999987 9999999999887653 135789999999976665 555554 445666666553
No 170
>PHA03411 putative methyltransferase; Provisional
Probab=98.62 E-value=2.5e-07 Score=86.48 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=73.4
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
.....+|||+|||+ |..++.++...+ +.+|+++|+++++++.+++++ .+++++.+|+.
T Consensus 62 ~~~~grVLDLGcGs---------------Gilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~ 119 (279)
T PHA03411 62 AHCTGKVLDLCAGI---------------GRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVF 119 (279)
T ss_pred cccCCeEEEcCCCC---------------CHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchh
Confidence 33456999999999 999888877653 479999999999999998864 25889999997
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCc-----c------ch------------HHHHHHHHhcccCCeEEEEe
Q 022597 197 DSLKALILNGEASSYDFAFVDAEK-----R------MY------------QEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~-----~------~~------------~~~~~~~~~lLkpgG~ivid 243 (294)
+... ..+||+|+.+++- . .| .+++.....+|+|+|.+.+-
T Consensus 120 e~~~-------~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 120 EFES-------NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhcc-------cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 6531 4689999998651 1 12 34455556789999876553
No 171
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.62 E-value=5.1e-07 Score=85.19 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180 (294)
Q Consensus 101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~ 180 (294)
..+++.....+...+...++.+|||||||+ |..+..++.. ..+|+++|+|+++++.++++++
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~---------------G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~ 79 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGT---------------GNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQ 79 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCch---------------HHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHH
Confidence 456666666666666666778999999999 9999998875 4689999999999999999998
Q ss_pred HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
..+..++++++++|+.+.. ..+||.|+.+.+
T Consensus 80 ~~~~~~~v~ii~~Dal~~~--------~~~~d~VvaNlP 110 (294)
T PTZ00338 80 NSPLASKLEVIEGDALKTE--------FPYFDVCVANVP 110 (294)
T ss_pred hcCCCCcEEEEECCHhhhc--------ccccCEEEecCC
Confidence 8876678999999997631 246899998865
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.62 E-value=2.9e-07 Score=83.33 Aligned_cols=124 Identities=17% Similarity=0.215 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180 (294)
Q Consensus 101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~ 180 (294)
-.++|...+++.. .....+.+||..|||. |+-.++++.. +.+|+|+|+++..++.+.+...
T Consensus 20 ~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~---------------g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~ 80 (218)
T PF05724_consen 20 GEPNPALVEYLDS-LALKPGGRVLVPGCGK---------------GYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENN 80 (218)
T ss_dssp TTSTHHHHHHHHH-HTTSTSEEEEETTTTT---------------SCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHh-cCCCCCCeEEEeCCCC---------------hHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhc
Confidence 3567777776666 3445566999999999 9999999985 5799999999999887743211
Q ss_pred H-h------C----CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEec
Q 022597 181 R-A------G----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 181 ~-~------g----l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
. . + -..+|++.+||..+.-+.. .++||+|+-.+ ++....+|.+.+.++|+|||.+++-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~-----~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 81 LEPTVTSVGGFKRYQAGRITIYCGDFFELPPED-----VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp TEEECTTCTTEEEETTSSEEEEES-TTTGGGSC-----HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred cCCCcccccceeeecCCceEEEEcccccCChhh-----cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 1 0 0 1246899999998754321 35899997542 36778999999999999999965544
Q ss_pred ccCC
Q 022597 245 VLWH 248 (294)
Q Consensus 245 vl~~ 248 (294)
+.+.
T Consensus 156 l~~~ 159 (218)
T PF05724_consen 156 LEYP 159 (218)
T ss_dssp EES-
T ss_pred EEcC
Confidence 4433
No 173
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.61 E-value=3.4e-07 Score=80.94 Aligned_cols=96 Identities=20% Similarity=0.366 Sum_probs=81.5
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
+++|||+|. |.-++-++...| +.+++.+|.+..-+...+...+..|++ +++++++.+.+ +.
T Consensus 51 ~~lDiGSGa---------------GfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~ 111 (184)
T PF02527_consen 51 KVLDIGSGA---------------GFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE 111 (184)
T ss_dssp EEEEETSTT---------------TTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT
T ss_pred eEEecCCCC---------------CChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc
Confidence 799999999 999999999987 889999999999999999999999997 59999999987 11
Q ss_pred HhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 202 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 202 l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
...+||+|+.-+- .....+++.+.+++++||.+++
T Consensus 112 -----~~~~fd~v~aRAv-~~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 112 -----YRESFDVVTARAV-APLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp -----TTT-EEEEEEESS-SSHHHHHHHHGGGEEEEEEEEE
T ss_pred -----cCCCccEEEeehh-cCHHHHHHHHHHhcCCCCEEEE
Confidence 1689999998874 3567899999999999999874
No 174
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.57 E-value=3.9e-07 Score=82.46 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=82.5
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE
Q 022597 110 LLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 189 (294)
Q Consensus 110 lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~ 189 (294)
.+.......+.++|+|||.|+ |..+..+++..| +.+++.+|+ |+.++.+++ .++|+
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~---------------G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~ 146 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGS---------------GHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVE 146 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TT---------------SHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEE
T ss_pred hhhccccccCccEEEeccCcc---------------hHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccc
Confidence 334444555667999999999 999999999998 889999999 888888887 67999
Q ss_pred EEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCC--eEEEEecccCC
Q 022597 190 IKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVG--GIIVIDNVLWH 248 (294)
Q Consensus 190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpg--G~ivid~vl~~ 248 (294)
++.||..+.+ .. +|++++-. +.+.-..+++.+.+.|+|| |.|++.+.+.+
T Consensus 147 ~~~gd~f~~~--------P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 147 FVPGDFFDPL--------PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEES-TTTCC--------SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred cccccHHhhh--------cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 9999997542 34 99998742 3556788999999999999 99888877543
No 175
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.55 E-value=4.2e-07 Score=90.42 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=79.1
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHC---CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
.+.|+|||||+ |-.+...+++. ....+|++||.|+.+....++.++.+|+.++|+++++|.+
T Consensus 187 ~~vVldVGAGr---------------GpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r 251 (448)
T PF05185_consen 187 DKVVLDVGAGR---------------GPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMR 251 (448)
T ss_dssp T-EEEEES-TT---------------SHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TT
T ss_pred ceEEEEeCCCc---------------cHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCccc
Confidence 46799999999 99887776654 2246999999999998888888899999999999999998
Q ss_pred hhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEec
Q 022597 197 DSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
++-. ..+.|+|+.-. ..+..++.+....+.|+|||+++=..
T Consensus 252 ~v~l-------pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~ 297 (448)
T PF05185_consen 252 EVEL-------PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSS 297 (448)
T ss_dssp TSCH-------SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSE
T ss_pred CCCC-------CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcc
Confidence 8632 46899998542 23456788888889999999987543
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.54 E-value=9.9e-07 Score=81.32 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=74.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178 (294)
Q Consensus 99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~ 178 (294)
....+++...+.+...+...++++|||||||+ |..+..++.. ..+|+++|+++++++.++++
T Consensus 9 Qnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~---------------G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~ 70 (258)
T PRK14896 9 QHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGK---------------GALTDELAKR---AKKVYAIELDPRLAEFLRDD 70 (258)
T ss_pred ccccCCHHHHHHHHHhcCCCCcCeEEEEeCcc---------------CHHHHHHHHh---CCEEEEEECCHHHHHHHHHH
Confidence 34567777777777777777788999999999 9999999986 36899999999999999988
Q ss_pred HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
++. .++++++++|+.+.. ...||.|+.+.+
T Consensus 71 ~~~---~~~v~ii~~D~~~~~--------~~~~d~Vv~NlP 100 (258)
T PRK14896 71 EIA---AGNVEIIEGDALKVD--------LPEFNKVVSNLP 100 (258)
T ss_pred hcc---CCCEEEEEeccccCC--------chhceEEEEcCC
Confidence 864 357999999997641 245899988765
No 177
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.53 E-value=5.3e-07 Score=86.46 Aligned_cols=118 Identities=21% Similarity=0.235 Sum_probs=95.4
Q ss_pred CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180 (294)
Q Consensus 101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~ 180 (294)
-.+.|..++.+..|++..+++.+||=-||| |...+... +- +++++|+|++.++++-|+.|++
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGT---------------GgiLiEag--l~-G~~viG~Did~~mv~gak~Nl~ 240 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGT---------------GGILIEAG--LM-GARVIGSDIDERMVRGAKINLE 240 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCc---------------cHHHHhhh--hc-CceEeecchHHHHHhhhhhhhh
Confidence 468999999999999999999999999988 65544443 33 7899999999999999999999
Q ss_pred HhCCCCcEEEEEc-chhhhHHHHhhcCCCCceeEEEEcCC-------c-----cchHHHHHHHHhcccCCeEEEEe
Q 022597 181 RAGVSHKVKIKHG-LAADSLKALILNGEASSYDFAFVDAE-------K-----RMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 181 ~~gl~~~v~~~~g-da~~~l~~l~~~~~~~~fD~vfiD~~-------~-----~~~~~~~~~~~~lLkpgG~ivid 243 (294)
..|+.+ ..+... |+... + +. ..++|.|..|++ + +-|.++|+.+.+.|++||++++-
T Consensus 241 ~y~i~~-~~~~~~~Da~~l-p-l~----~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 241 YYGIED-YPVLKVLDATNL-P-LR----DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred hhCcCc-eeEEEecccccC-C-CC----CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 999875 555555 88654 2 31 346999999987 1 22889999999999999988863
No 178
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.49 E-value=2.1e-06 Score=78.27 Aligned_cols=125 Identities=9% Similarity=0.029 Sum_probs=88.4
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY 179 (294)
Q Consensus 100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~ 179 (294)
.....|-..+.+..+.. .++.+||..|||. |.-..+++.. +.+|+|+|+++..++.+.+
T Consensus 25 ~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGk---------------g~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~-- 83 (226)
T PRK13256 25 QESPNEFLVKHFSKLNI-NDSSVCLIPMCGC---------------SIDMLFFLSK---GVKVIGIELSEKAVLSFFS-- 83 (226)
T ss_pred cCCCCHHHHHHHHhcCC-CCCCeEEEeCCCC---------------hHHHHHHHhC---CCcEEEEecCHHHHHHHHH--
Confidence 34455554444444321 2446999999999 9999999985 6789999999999987754
Q ss_pred HHhCC--------------CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEE
Q 022597 180 ERAGV--------------SHKVKIKHGLAADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGII 240 (294)
Q Consensus 180 ~~~gl--------------~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~i 240 (294)
++++ ..++++.++|..+.-..- ...++||+|+-- -+.....+|.+.+.++|+|||.+
T Consensus 84 -e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~---~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 84 -QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA---NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred -HcCCCcceecccccceeccCceEEEEccCcCCCccc---cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence 2211 236999999998752100 013679998543 34677899999999999999998
Q ss_pred EEecccCCC
Q 022597 241 VIDNVLWHG 249 (294)
Q Consensus 241 vid~vl~~g 249 (294)
++-..-..+
T Consensus 160 lll~~~~~~ 168 (226)
T PRK13256 160 LLLVMEHDK 168 (226)
T ss_pred EEEEEecCC
Confidence 886654444
No 179
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.48 E-value=4.2e-07 Score=83.26 Aligned_cols=111 Identities=18% Similarity=0.337 Sum_probs=79.2
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC-----C---------
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-----V--------- 184 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g-----l--------- 184 (294)
.++.+|||||-+ |..++.||+... .-.|.|||+|+..++.|+++++..- +
T Consensus 58 ~~~~~LDIGCNs---------------G~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~ 121 (288)
T KOG2899|consen 58 EPKQALDIGCNS---------------GFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFG 121 (288)
T ss_pred CcceeEeccCCc---------------chhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccc
Confidence 455799999999 999999999986 4569999999999999999887421 0
Q ss_pred --------------------CCcEEEEEcch----hhhHHHHhhcCCCCceeEEEE-------c--CCccchHHHHHHHH
Q 022597 185 --------------------SHKVKIKHGLA----ADSLKALILNGEASSYDFAFV-------D--AEKRMYQEYFELLL 231 (294)
Q Consensus 185 --------------------~~~v~~~~gda----~~~l~~l~~~~~~~~fD~vfi-------D--~~~~~~~~~~~~~~ 231 (294)
.+++.+...+. .|.+ .+ ....||+|+. + .+.+....+|..+.
T Consensus 122 ~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis 196 (288)
T KOG2899|consen 122 VQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DM----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKIS 196 (288)
T ss_pred cccccccccccccccccccCCcchhcccccEEEecchhh-hh----ccccccEEEEEEeeeeEecccccHHHHHHHHHHH
Confidence 01111211111 1222 11 2578999963 2 33456899999999
Q ss_pred hcccCCeEEEEecccCCCc
Q 022597 232 QLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 232 ~lLkpgG~ivid~vl~~g~ 250 (294)
++|.|||++|+.-=-|...
T Consensus 197 ~ll~pgGiLvvEPQpWksY 215 (288)
T KOG2899|consen 197 SLLHPGGILVVEPQPWKSY 215 (288)
T ss_pred HhhCcCcEEEEcCCchHHH
Confidence 9999999999886666543
No 180
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=2.8e-06 Score=74.89 Aligned_cols=102 Identities=15% Similarity=0.250 Sum_probs=82.6
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
++-|+|||||+ |+.+-.+++.+.++....++|+||+.++..++-++.++.. ++.+..|..+.+
T Consensus 44 ~~i~lEIG~GS---------------GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l 106 (209)
T KOG3191|consen 44 PEICLEIGCGS---------------GVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGL 106 (209)
T ss_pred ceeEEEecCCc---------------chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhh
Confidence 55799999999 9999999999988888999999999999999999988763 788888887766
Q ss_pred HHHhhcCCCCceeEEEEcCC------------------------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 200 KALILNGEASSYDFAFVDAE------------------------KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfiD~~------------------------~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
. .++.|+++.+++ .+-...++..+-.+|.|.|++.+--+
T Consensus 107 ~-------~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 107 R-------NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred c-------cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 5 478999876643 01145666667788999999987554
No 181
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1e-06 Score=79.23 Aligned_cols=112 Identities=22% Similarity=0.292 Sum_probs=84.6
Q ss_pred HHHHHHHHh-hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCC-
Q 022597 108 AQLLAMLVQ-ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGV- 184 (294)
Q Consensus 108 ~~lL~~l~~-~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl- 184 (294)
+.++..|-. ..++-+.||+|+|+ ||.+.++++.+.. +...++||.-++.++.++++++..--
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGS---------------GYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~ 134 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGS---------------GYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITT 134 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCc---------------cHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccC
Confidence 445555442 45667999999999 9999999976654 44459999999999999999986431
Q ss_pred --------CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 185 --------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 185 --------~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
..++.++.||.+...+. ..+||.|++.+... +..+.+...|++||.|++-
T Consensus 135 ~e~~~~~~~~~l~ivvGDgr~g~~e------~a~YDaIhvGAaa~---~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 135 SESSSKLKRGELSIVVGDGRKGYAE------QAPYDAIHVGAAAS---ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred chhhhhhccCceEEEeCCccccCCc------cCCcceEEEccCcc---ccHHHHHHhhccCCeEEEe
Confidence 24678889998765433 58999999987643 4445677788999988875
No 182
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.44 E-value=7.9e-07 Score=85.04 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=81.3
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
+.+.+.|||+|||| |..++.-|++. ..+|+++|-+.-. +.|++.++.+++++.|++++|...
T Consensus 58 lf~dK~VlDVGcGt---------------GILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvE 119 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGT---------------GILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVE 119 (346)
T ss_pred hcCCCEEEEcCCCc---------------cHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceE
Confidence 56788999999999 99999988875 5799999998765 999999999999999999999998
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHH--------hcccCCeEEEEecc
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL--------QLIRVGGIIVIDNV 245 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~--------~lLkpgG~ivid~v 245 (294)
+. .+. .++.|.|+.. +-.|--+++.++ +.|+|||.++=+-.
T Consensus 120 di--~LP----~eKVDiIvSE--WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 120 DI--ELP----VEKVDIIVSE--WMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred EE--ecC----ccceeEEeeh--hhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 86 331 4789988753 233333333332 68999999876544
No 183
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.42 E-value=1.3e-06 Score=82.52 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=69.5
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++..+||.+||. |.-+..++..+++.++|+|+|.|+++++.|++.++. .+++++++++..+
T Consensus 18 ~pg~~vlD~TlG~---------------GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~ 79 (296)
T PRK00050 18 KPDGIYVDGTFGG---------------GGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSN 79 (296)
T ss_pred CCCCEEEEeCcCC---------------hHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHH
Confidence 3556999999999 999999999987789999999999999999998865 4689999999998
Q ss_pred hHHHHhhcCCCCceeEEEEcCCc
Q 022597 198 SLKALILNGEASSYDFAFVDAEK 220 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~ 220 (294)
....+.. + ..++|.|+.|.+.
T Consensus 80 l~~~l~~-~-~~~vDgIl~DLGv 100 (296)
T PRK00050 80 LKEVLAE-G-LGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHc-C-CCccCEEEECCCc
Confidence 7655532 1 2389999998764
No 184
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.42 E-value=8.4e-07 Score=77.93 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=63.1
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||+|||+ |..+..++... +..++++|+++++++.+++ .+++++.+|+.+.
T Consensus 13 ~~~~iLDiGcG~---------------G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~ 67 (194)
T TIGR02081 13 PGSRVLDLGCGD---------------GELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEG 67 (194)
T ss_pred CCCEEEEeCCCC---------------CHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhc
Confidence 456999999999 99888887653 4678999999999888754 1367888888653
Q ss_pred HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccC
Q 022597 199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRV 236 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkp 236 (294)
+..+ ..++||+|+.... ..+....++.+.+.+++
T Consensus 68 l~~~----~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 68 LEAF----PDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred cccc----CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 3222 1478999998643 23455666666665553
No 185
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.41 E-value=3.3e-06 Score=77.49 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=74.8
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY 179 (294)
Q Consensus 100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~ 179 (294)
...+++...+-+...+...++.+|||||||+ |..+..++... ..|+++|.|+++++.+++++
T Consensus 10 ~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~---------------G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 10 NFLIDESVIQKIVEAANVLEGDVVLEIGPGL---------------GALTEPLLKRA---KKVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred ccCCCHHHHHHHHHhcCCCCcCEEEEeCCCC---------------CHHHHHHHHhC---CcEEEEECCHHHHHHHHHHh
Confidence 3456777666666656666778999999999 99999999875 36999999999999998877
Q ss_pred HHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee---EEEEcCCccchHHHHHHHH
Q 022597 180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYD---FAFVDAEKRMYQEYFELLL 231 (294)
Q Consensus 180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD---~vfiD~~~~~~~~~~~~~~ 231 (294)
.. ..+++++++|+.+... .++| .|+.+.+..-....+..+.
T Consensus 72 ~~---~~~v~v~~~D~~~~~~--------~~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 72 SL---YERLEVIEGDALKVDL--------PDFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred Cc---CCcEEEEECchhcCCh--------hHcCCcceEEEcCChhhHHHHHHHHh
Confidence 43 4579999999976422 2355 7777765333344444444
No 186
>PRK00536 speE spermidine synthase; Provisional
Probab=98.39 E-value=4e-06 Score=78.05 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=75.6
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CC-CCcEEEEEcc
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGL 194 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl-~~~v~~~~gd 194 (294)
.+|++||=||.|- |.....+++. + .+|+.||+|++.++.+++++... ++ +.|++++..
T Consensus 71 ~~pk~VLIiGGGD---------------Gg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~- 131 (262)
T PRK00536 71 KELKEVLIVDGFD---------------LELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ- 131 (262)
T ss_pred CCCCeEEEEcCCc---------------hHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-
Confidence 4678999999999 8777777775 3 49999999999999999976642 22 467888751
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
..+. ..++||+|++|... -.++++.+.+.|+|||+++...
T Consensus 132 ----~~~~----~~~~fDVIIvDs~~--~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 132 ----LLDL----DIKKYDLIICLQEP--DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred ----hhhc----cCCcCCEEEEcCCC--ChHHHHHHHHhcCCCcEEEECC
Confidence 1111 13789999999542 3688899999999999999753
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.39 E-value=3.3e-06 Score=85.28 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=83.5
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
....+||||||. |-..+.+|...| +..++|+|+....+..+.+..++.|+. ++.++.+|+...
T Consensus 347 ~~p~~lEIG~G~---------------G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~ 409 (506)
T PRK01544 347 KRKVFLEIGFGM---------------GEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLI 409 (506)
T ss_pred CCceEEEECCCc---------------hHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHH
Confidence 456899999999 999999999987 788999999999999998888888886 588988887544
Q ss_pred HHHHhhcCCCCceeEEEE---cCCc--cc------hHHHHHHHHhcccCCeEEEE
Q 022597 199 LKALILNGEASSYDFAFV---DAEK--RM------YQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfi---D~~~--~~------~~~~~~~~~~lLkpgG~ivi 242 (294)
...+ ..+++|.|++ |+|+ ++ .+++++.+.+.|+|||.+-+
T Consensus 410 ~~~~----~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 410 LNDL----PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred HHhc----CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 4433 2467888876 4551 11 68999999999999998875
No 188
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.38 E-value=4.8e-06 Score=77.43 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180 (294)
Q Consensus 101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~ 180 (294)
..+++...+.+...+...++.+|||||||+ |..+..++... .+|+++|+|+++++.+++++.
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~---------------G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGL---------------GALTEPLLERA---AKVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCc---------------cHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc
Confidence 456777666666666667778999999999 99999999874 489999999999999998764
Q ss_pred HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHH
Q 022597 181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL 231 (294)
Q Consensus 181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~ 231 (294)
. .+++++++|+.+.-.. .-.+|.|+.+.+-.-...++..+.
T Consensus 86 ~----~~v~~i~~D~~~~~~~------~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 86 E----DNLTIIEGDALKVDLS------ELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred c----CceEEEEChhhcCCHH------HcCcceEEEeCCccchHHHHHHHH
Confidence 2 5799999999765211 111578887765333344444444
No 189
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=1.7e-06 Score=78.20 Aligned_cols=98 Identities=23% Similarity=0.406 Sum_probs=83.4
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
+++++|||+|. |.-++-+|...| +.+||-+|...+.+...++..++.|+. +++++++.+.+.-
T Consensus 68 ~~~~~DIGSGa---------------GfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~ 130 (215)
T COG0357 68 AKRVLDIGSGA---------------GFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFG 130 (215)
T ss_pred CCEEEEeCCCC---------------CCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcc
Confidence 57999999999 999999998777 666999999999999999999999997 5999999998764
Q ss_pred HHHhhcCCCCc-eeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 200 KALILNGEASS-YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 200 ~~l~~~~~~~~-fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+. .. ||+|..-+- .....+++.+.+++++||.+++
T Consensus 131 ~~-------~~~~D~vtsRAv-a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 131 QE-------KKQYDVVTSRAV-ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred cc-------cccCcEEEeehc-cchHHHHHHHHHhcccCCcchh
Confidence 32 23 999987763 3467889999999999998753
No 190
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.33 E-value=2.6e-06 Score=75.67 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=84.0
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||+|||. |..-.++... .+.+.+|+|++++.+..+.+ ..+.++++|..+-
T Consensus 13 pgsrVLDLGCGd---------------G~LL~~L~~~--k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~g 67 (193)
T PF07021_consen 13 PGSRVLDLGCGD---------------GELLAYLKDE--KQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEG 67 (193)
T ss_pred CCCEEEecCCCc---------------hHHHHHHHHh--cCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHh
Confidence 567999999999 8777666664 37899999999998654432 2467999999888
Q ss_pred HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC--eEEEEecc---------cCCCccc--C--c--cc--CCc
Q 022597 199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG--GIIVIDNV---------LWHGKVA--D--Q--MV--NDA 259 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg--G~ivid~v---------l~~g~v~--~--~--~~--~~~ 259 (294)
+..+. +++||.|++.-.-.....--+.+.++||-| +++.+.|. ++.|++- + | .+ ++.
T Consensus 68 L~~f~----d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNi 143 (193)
T PF07021_consen 68 LADFP----DQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNI 143 (193)
T ss_pred HhhCC----CCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCc
Confidence 77663 789999998754322222222234445555 56666665 3567642 1 1 11 233
Q ss_pred chHHHHHHHHHhhhC
Q 022597 260 KTISIRNFNKNLMED 274 (294)
Q Consensus 260 ~~~~ir~f~~~l~~~ 274 (294)
+-..+++|.+...+.
T Consensus 144 h~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 144 HLCTIKDFEDLCREL 158 (193)
T ss_pred ccccHHHHHHHHHHC
Confidence 445889998776554
No 191
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.32 E-value=3e-06 Score=79.31 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=71.8
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH-HhCCCCcEEEEEcchhhh
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~-~~gl~~~v~~~~gda~~~ 198 (294)
+++|+=||||.- -.+++.++.....+.+++++|++++..+.+++.++ ..|+..+++|+.+|..+.
T Consensus 121 p~rVaFIGSGPL--------------PlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 121 PSRVAFIGSGPL--------------PLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDV 186 (276)
T ss_dssp --EEEEE---SS---------------HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG
T ss_pred cceEEEEcCCCc--------------chHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcc
Confidence 359999999852 66778888765557899999999999999999998 678899999999999776
Q ss_pred HHHHhhcCCCCceeEEEEcCCcc----chHHHHHHHHhcccCCeEEEEecc
Q 022597 199 LKALILNGEASSYDFAFVDAEKR----MYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~~----~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
...+ ..||.||+-+-.. .-.+.++.+.+.++||+.+++-..
T Consensus 187 ~~dl------~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 187 TYDL------KEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -GG----------SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred cccc------ccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 4333 6899999876543 778999999999999999998643
No 192
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.28 E-value=5.3e-06 Score=80.09 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCCCCCCHHHHHHHHHHH-hhhCC--CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH
Q 022597 98 GSQMQVSPDQAQLLAMLV-QILGA--QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174 (294)
Q Consensus 98 ~~~~~v~~~~~~lL~~l~-~~~~~--~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~ 174 (294)
++..|+.+.+.+-|...+ ...+. ..+||+-||+ |..|+.+|... .+|+|||.++++++.
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~---------------G~fsl~la~~~---~~V~gvE~~~~av~~ 233 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGV---------------GTFSLPLAKKA---KKVIGVEIVEEAVED 233 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TT---------------TCCHHHHHCCS---SEEEEEES-HHHHHH
T ss_pred CcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecC---------------CHHHHHHHhhC---CeEEEeeCCHHHHHH
Confidence 566788888765555544 43332 3799999999 99999998764 689999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEcchhhhHHHHhhc----------CCCCceeEEEEcCCccch-HHHHHHHH
Q 022597 175 AKKYYERAGVSHKVKIKHGLAADSLKALILN----------GEASSYDFAFVDAEKRMY-QEYFELLL 231 (294)
Q Consensus 175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~----------~~~~~fD~vfiD~~~~~~-~~~~~~~~ 231 (294)
|+++++.+|+. +++++.+++.+....+... .....+|.|++|++.... ....+.+.
T Consensus 234 A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~ 300 (352)
T PF05958_consen 234 ARENAKLNGID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK 300 (352)
T ss_dssp HHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred HHHHHHHcCCC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence 99999999996 5999999887654433110 012368999999985443 34455443
No 193
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.25 E-value=9.2e-06 Score=72.91 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=84.2
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
+|||||||| |--+.+++..+| ..+-...|.+++...-.+.++...|+.+-..-+.-|+.+-.-.
T Consensus 28 ~vLEiaSGt---------------GqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 28 RVLEIASGT---------------GQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP 91 (204)
T ss_pred eEEEEcCCc---------------cHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence 599999999 999999999998 6788899999999888899999888764222233333221000
Q ss_pred Hh--hcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEEeccc-CCCcccCc
Q 022597 202 LI--LNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVL-WHGKVADQ 254 (294)
Q Consensus 202 l~--~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid~vl-~~g~v~~~ 254 (294)
.. .....++||.||.- .++.....+|+.+.++|++||.+++-.-+ .+|+...+
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~ 152 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE 152 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc
Confidence 00 00124689999853 34667789999999999999999987654 44554433
No 194
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.22 E-value=2.6e-05 Score=73.36 Aligned_cols=123 Identities=19% Similarity=0.274 Sum_probs=96.4
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597 109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHK 187 (294)
Q Consensus 109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~ 187 (294)
+-+..|.+...+-+||||.||. |---+-+....+. ..++...|.++..++..++.+++.|+.+.
T Consensus 125 ~ai~~L~~~g~pvrIlDIAaG~---------------GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i 189 (311)
T PF12147_consen 125 QAIARLREQGRPVRILDIAAGH---------------GRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDI 189 (311)
T ss_pred HHHHHHHhcCCceEEEEeccCC---------------cHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence 3333444445677999999999 9888888777774 36899999999999999999999999998
Q ss_pred EEEEEcchhhh--HHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecccCCCcc
Q 022597 188 VKIKHGLAADS--LKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV 251 (294)
Q Consensus 188 v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v 251 (294)
++|.++|+.+. +..+ ...++++++.+- -....+-+.-+...+.|||++|..+-=||-.+
T Consensus 190 ~~f~~~dAfd~~~l~~l-----~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl 256 (311)
T PF12147_consen 190 ARFEQGDAFDRDSLAAL-----DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL 256 (311)
T ss_pred eEEEecCCCCHhHhhcc-----CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence 89999999875 3333 456788887643 22245567778899999999999998888664
No 195
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.22 E-value=4.4e-06 Score=75.69 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=79.9
Q ss_pred CCCCHH-HHHHHHHHH-hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597 101 MQVSPD-QAQLLAMLV-QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178 (294)
Q Consensus 101 ~~v~~~-~~~lL~~l~-~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~ 178 (294)
..++|+ .+..++..+ ....+..|+|.-||. |..++.++... ..|++||+||..+..|+.|
T Consensus 74 fsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~---------------gGntiqfa~~~---~~VisIdiDPikIa~AkhN 135 (263)
T KOG2730|consen 74 FSVTPEKIAEHIANRVVACMNAEVIVDAFCGV---------------GGNTIQFALQG---PYVIAIDIDPVKIACARHN 135 (263)
T ss_pred EEeccHHHHHHHHHHHHHhcCcchhhhhhhcC---------------CchHHHHHHhC---CeEEEEeccHHHHHHHhcc
Confidence 356665 355555544 334778999999988 88888888764 5899999999999999999
Q ss_pred HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc
Q 022597 179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK 220 (294)
Q Consensus 179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~ 220 (294)
++-.|+.++|+|++||..+..+.+... ...+|+||..+++
T Consensus 136 aeiYGI~~rItFI~GD~ld~~~~lq~~--K~~~~~vf~sppw 175 (263)
T KOG2730|consen 136 AEVYGVPDRITFICGDFLDLASKLKAD--KIKYDCVFLSPPW 175 (263)
T ss_pred ceeecCCceeEEEechHHHHHHHHhhh--hheeeeeecCCCC
Confidence 999999999999999999988776432 3568999988764
No 196
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.20 E-value=3.7e-06 Score=72.04 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=60.4
Q ss_pred EEEeCChHHHHHHHHHHHHh--CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCC
Q 022597 163 VACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVG 237 (294)
Q Consensus 163 ~~id~~~~~~~~A~~~~~~~--gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpg 237 (294)
+|+|+|+++++.|++..+.. +...+++++++|+.+. +. ..++||+|++... ..+..+.++.+.+.||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 58999999999998776532 3345799999999764 21 2578999987643 356789999999999999
Q ss_pred eEEEEecc
Q 022597 238 GIIVIDNV 245 (294)
Q Consensus 238 G~ivid~v 245 (294)
|.+++.+.
T Consensus 75 G~l~i~d~ 82 (160)
T PLN02232 75 SRVSILDF 82 (160)
T ss_pred eEEEEEEC
Confidence 99988766
No 197
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=2.3e-06 Score=78.42 Aligned_cols=105 Identities=20% Similarity=0.218 Sum_probs=77.1
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 200 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~ 200 (294)
+|||||||. |-...-+.+..+. +-+|++||.+|..++..+++..... .++.-..-|... +
T Consensus 74 ~ilEvGCGv---------------GNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~--~ 134 (264)
T KOG2361|consen 74 TILEVGCGV---------------GNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTS--P 134 (264)
T ss_pred hheeeccCC---------------CcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccc--h
Confidence 799999999 9999999988763 3789999999999998887765432 334433333321 1
Q ss_pred HHhhcCCCCceeEEE-----EcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 201 ALILNGEASSYDFAF-----VDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 201 ~l~~~~~~~~fD~vf-----iD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+...-+.+++|+|. .-..++..+..++.+.++|||||.+++-|.
T Consensus 135 ~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 135 SLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred hccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 222222468899763 233467788999999999999999999887
No 198
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.19 E-value=4.6e-06 Score=75.42 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=78.9
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
+..++||.|+|. |-.|-.++... -.+|..+|..+++++.|++++... .....++.+....+.
T Consensus 55 ~~~~alDcGAGI---------------GRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f 116 (218)
T PF05891_consen 55 KFNRALDCGAGI---------------GRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDF 116 (218)
T ss_dssp --SEEEEET-TT---------------THHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-
T ss_pred CcceEEeccccc---------------chhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhc
Confidence 346999999999 99988776543 468999999999999999877652 123456777667666
Q ss_pred HHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEE-ecccCCCc-ccCcc
Q 022597 199 LKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVI-DNVLWHGK-VADQM 255 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivi-d~vl~~g~-v~~~~ 255 (294)
.+. .++||+|.+. -...+..+||+.|...|+|||+|++ +|+--.|. +.|+.
T Consensus 117 ~P~------~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~ 174 (218)
T PF05891_consen 117 TPE------EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEE 174 (218)
T ss_dssp ---------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETT
T ss_pred cCC------CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCc
Confidence 553 4799999875 3356789999999999999999999 66666665 44443
No 199
>PRK10742 putative methyltransferase; Provisional
Probab=98.15 E-value=1.3e-05 Score=73.92 Aligned_cols=89 Identities=16% Similarity=0.247 Sum_probs=72.5
Q ss_pred HHHHHHHHhhhCCC--eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh---
Q 022597 108 AQLLAMLVQILGAQ--RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--- 182 (294)
Q Consensus 108 ~~lL~~l~~~~~~~--~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--- 182 (294)
++.|...+.+.++. +|||.-+|+ |.-++.++.. +++|+++|.++......+++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGl---------------G~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~ 136 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGL---------------GRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYAD 136 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCc---------------cHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhc
Confidence 45666666666665 889988888 8887777764 678999999999999999999986
Q ss_pred ---C--CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 183 ---G--VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 183 ---g--l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
+ +..+++++++|+.++++.. ..+||+||+|+.
T Consensus 137 ~~~~~~~~~ri~l~~~da~~~L~~~-----~~~fDVVYlDPM 173 (250)
T PRK10742 137 AEIGGWLQERLQLIHASSLTALTDI-----TPRPQVVYLDPM 173 (250)
T ss_pred cccchhhhceEEEEeCcHHHHHhhC-----CCCCcEEEECCC
Confidence 3 2367999999999998764 458999999986
No 200
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.1e-05 Score=68.95 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=79.1
Q ss_pred CCCCCHHH-HHHHHHHHhh---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHH
Q 022597 100 QMQVSPDQ-AQLLAMLVQI---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVA 175 (294)
Q Consensus 100 ~~~v~~~~-~~lL~~l~~~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A 175 (294)
+...+|+. +.++.++-.. ..++.++|+|||+ |..+ ++-..+....|+|+|++|+.++.+
T Consensus 25 QY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgc---------------GmLs--~a~sm~~~e~vlGfDIdpeALEIf 87 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGC---------------GMLS--IAFSMPKNESVLGFDIDPEALEIF 87 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhccccCcchhhhcCch---------------hhhH--HHhhcCCCceEEeeecCHHHHHHH
Confidence 34456664 4455554433 3578999999988 8776 556667678899999999999999
Q ss_pred HHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcc
Q 022597 176 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLI 234 (294)
Q Consensus 176 ~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lL 234 (294)
++|.++..++ +.+.+.|..+.... .+.||.++++++ +..-.++++..+++.
T Consensus 88 ~rNaeEfEvq--idlLqcdildle~~------~g~fDtaviNppFGTk~~~aDm~fv~~al~~~ 143 (185)
T KOG3420|consen 88 TRNAEEFEVQ--IDLLQCDILDLELK------GGIFDTAVINPPFGTKKKGADMEFVSAALKVA 143 (185)
T ss_pred hhchHHhhhh--hheeeeeccchhcc------CCeEeeEEecCCCCcccccccHHHHHHHHHHH
Confidence 9999998775 68999988775443 488999999986 122234555555443
No 201
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.14 E-value=1.3e-05 Score=76.97 Aligned_cols=107 Identities=10% Similarity=0.116 Sum_probs=70.5
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC---------CCCcEE
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---------VSHKVK 189 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g---------l~~~v~ 189 (294)
++.+|||+|||-| |-..-|.... -..++|+|++++.++.|+++++... ..-...
T Consensus 62 ~~~~VLDl~CGkG--------------GDL~Kw~~~~---i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~ 124 (331)
T PF03291_consen 62 PGLTVLDLCCGKG--------------GDLQKWQKAK---IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAE 124 (331)
T ss_dssp TT-EEEEET-TTT--------------TTHHHHHHTT----SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEE
T ss_pred CCCeEEEecCCCc--------------hhHHHHHhcC---CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhh
Confidence 5569999999984 5566665543 3699999999999999999994321 122467
Q ss_pred EEEcchhhh-HHHHhhcCCCCceeEEEEcC-------CccchHHHHHHHHhcccCCeEEEEe
Q 022597 190 IKHGLAADS-LKALILNGEASSYDFAFVDA-------EKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 190 ~~~gda~~~-l~~l~~~~~~~~fD~vfiD~-------~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
++.+|.... +...... ...+||+|=+-. .......+++.+...|+|||+++..
T Consensus 125 f~~~D~f~~~l~~~~~~-~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 125 FIAADCFSESLREKLPP-RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp EEESTTCCSHHHCTSSS-TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeccccccchhhhhccc-cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 788877542 2211111 135999994432 2445678999999999999999864
No 202
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.13 E-value=3.4e-05 Score=74.64 Aligned_cols=105 Identities=20% Similarity=0.311 Sum_probs=82.7
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH--HHHhC----CCCcEEEEE
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERAG----VSHKVKIKH 192 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~--~~~~g----l~~~v~~~~ 192 (294)
++++||-+|.|- |.....+.+ .|.-.+++-+|+||++++.++++ ++..+ .+.|++++.
T Consensus 289 ~a~~vLvlGGGD---------------GLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~ 352 (508)
T COG4262 289 GARSVLVLGGGD---------------GLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN 352 (508)
T ss_pred ccceEEEEcCCc---------------hHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe
Confidence 567999999999 866666655 45568999999999999999944 33322 246899999
Q ss_pred cchhhhHHHHhhcCCCCceeEEEEcCCccc--------hHHHHHHHHhcccCCeEEEEec
Q 022597 193 GLAADSLKALILNGEASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~--------~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.|+..+++.- .+.||+|++|-+.++ -.+++..+.+.|+++|.+|+..
T Consensus 353 dDAf~wlr~a-----~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 353 DDAFQWLRTA-----ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccHHHHHHhh-----cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 9999998875 579999999865322 3578888889999999999854
No 203
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.12 E-value=4.3e-06 Score=76.62 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=65.6
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
.++|+|||+ |-.+..++... .+|+++|+++.|+++|++.....-..-..++-..+.. .
T Consensus 36 ~a~DvG~G~---------------Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v----~ 93 (261)
T KOG3010|consen 36 LAWDVGTGN---------------GQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMV----D 93 (261)
T ss_pred eEEEeccCC---------------CcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccc----c
Confidence 789999999 97777777764 5899999999999988875542111111111111111 1
Q ss_pred HhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCe-EEEEe
Q 022597 202 LILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGG-IIVID 243 (294)
Q Consensus 202 l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG-~ivid 243 (294)
| .|.+++.|+|.+--. +=+..++++.+.+.||+.| ++.+=
T Consensus 94 L--~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 94 L--LGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred c--cCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEE
Confidence 1 233689999975421 4457889999999999877 77653
No 204
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.10 E-value=7.9e-06 Score=74.61 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=90.1
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
-+++||+|||| |..+-.+-... .+++++|+|..|++.|.+. |+-+ ++.++++...+
T Consensus 126 F~~~lDLGCGT---------------GL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl 181 (287)
T COG4976 126 FRRMLDLGCGT---------------GLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFL 181 (287)
T ss_pred cceeeecccCc---------------CcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHh
Confidence 46999999999 98887766543 5899999999999887652 3322 34455555444
Q ss_pred HHHhhcCCCCceeEEEE-cC--CccchHHHHHHHHhcccCCeEEEEeccc---CCCcccCcccCCcchHHHHHHHHHhhh
Q 022597 200 KALILNGEASSYDFAFV-DA--EKRMYQEYFELLLQLIRVGGIIVIDNVL---WHGKVADQMVNDAKTISIRNFNKNLME 273 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfi-D~--~~~~~~~~~~~~~~lLkpgG~ivid~vl---~~g~v~~~~~~~~~~~~ir~f~~~l~~ 273 (294)
+.. +.++||+|.. |. .-.....+|-.+..+|+|||.+.+..=- |.|-+..|...-.+ -+.+.+.+.+
T Consensus 182 ~~~----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH---~~~YVr~~l~ 254 (287)
T COG4976 182 EDL----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAH---SESYVRALLA 254 (287)
T ss_pred hhc----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhcc---chHHHHHHHH
Confidence 432 3689999864 22 2344567788888999999999985322 22223333322111 1233444444
Q ss_pred CCCeEEEE-----------eecCCceEEEEEC
Q 022597 274 DERVSISM-----------VPIGDGMTICQKR 294 (294)
Q Consensus 274 ~~~~~~~~-----------lp~gdGl~i~~k~ 294 (294)
..++++.- -|+..++-|++|+
T Consensus 255 ~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 255 ASGLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred hcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence 44444322 4777888888875
No 205
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.06 E-value=1.7e-05 Score=77.45 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=82.0
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-cEEEEEcchhhhH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSL 199 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-~v~~~~gda~~~l 199 (294)
-+|||.=+|+ |.=++..+..++...+|++-|+|++.++.+++|++.+++.+ ++++.+.|+...+
T Consensus 51 ~~~lDalaas---------------GvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 51 IRVLDALAAS---------------GVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL 115 (377)
T ss_dssp EEEEETT-TT---------------SHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH
T ss_pred ceEEeccccc---------------cHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh
Confidence 4899999988 99999999998756799999999999999999999999998 8999999998776
Q ss_pred HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
... ...||+|=+|+. .....|++.+.+.++.||++.+...
T Consensus 116 ~~~-----~~~fD~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 116 YSR-----QERFDVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp CHS-----TT-EEEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred hhc-----cccCCEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 421 578999999985 3356899999999999999998543
No 206
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.05 E-value=1.6e-05 Score=76.16 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=77.9
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
...+.|||+|||+ |..++..+++- ..+|+++|-+. +.+.|++.++.+.+.+||+++.|...+
T Consensus 176 F~~kiVlDVGaGS---------------GILS~FAaqAG--A~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEd 237 (517)
T KOG1500|consen 176 FQDKIVLDVGAGS---------------GILSFFAAQAG--AKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIED 237 (517)
T ss_pred cCCcEEEEecCCc---------------cHHHHHHHHhC--cceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccc
Confidence 3567899999999 99988888874 47999999865 889999999999999999999999877
Q ss_pred hHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEE
Q 022597 198 SLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~iv 241 (294)
+- + .++.|+++..+- .++.+.|+ .+.+.|+|.|.+.
T Consensus 238 ie--L-----PEk~DviISEPMG~mL~NERMLEsYl-~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 238 IE--L-----PEKVDVIISEPMGYMLVNERMLESYL-HARKWLKPNGKMF 279 (517)
T ss_pred cc--C-----chhccEEEeccchhhhhhHHHHHHHH-HHHhhcCCCCccc
Confidence 52 2 578999987653 23333333 4468999999875
No 207
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=6.7e-05 Score=69.72 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180 (294)
Q Consensus 101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~ 180 (294)
..+++...+-+...+...+..+|||||+|. |..|..+++.. .+|+++|+|+..++..++.+.
T Consensus 12 FL~d~~v~~kIv~~a~~~~~d~VlEIGpG~---------------GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 12 FLIDKNVIDKIVEAANISPGDNVLEIGPGL---------------GALTEPLLERA---ARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred cccCHHHHHHHHHhcCCCCCCeEEEECCCC---------------CHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc
Confidence 345666655555566666677999999999 99999999874 689999999999999888776
Q ss_pred HhCCCCcEEEEEcchhhhH-HHHhhcCCCCceeEEEEcCC
Q 022597 181 RAGVSHKVKIKHGLAADSL-KALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 181 ~~gl~~~v~~~~gda~~~l-~~l~~~~~~~~fD~vfiD~~ 219 (294)
..+++++++||+...- +.+ ..++.|+.+-+
T Consensus 74 ---~~~n~~vi~~DaLk~d~~~l------~~~~~vVaNlP 104 (259)
T COG0030 74 ---PYDNLTVINGDALKFDFPSL------AQPYKVVANLP 104 (259)
T ss_pred ---cccceEEEeCchhcCcchhh------cCCCEEEEcCC
Confidence 4568999999997652 211 16788888765
No 208
>PRK04148 hypothetical protein; Provisional
Probab=97.99 E-value=8.6e-05 Score=62.56 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcH-HHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC
Q 022597 108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 186 (294)
Q Consensus 108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~-~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~ 186 (294)
++.|.......++++++|||||+ |. .+..+++ . +..|+++|++++.++.++++
T Consensus 5 ~~~l~~~~~~~~~~kileIG~Gf---------------G~~vA~~L~~-~--G~~ViaIDi~~~aV~~a~~~-------- 58 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGF---------------YFKVAKKLKE-S--GFDVIVIDINEKAVEKAKKL-------- 58 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecC---------------CHHHHHHHHH-C--CCEEEEEECCHHHHHHHHHh--------
Confidence 34444434333456899999999 86 5555554 2 68999999999987776554
Q ss_pred cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccC
Q 022597 187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV 236 (294)
Q Consensus 187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkp 236 (294)
.++++.+|..+--..+ -+.+|+|+.--+++..+..+-.+.+.+.-
T Consensus 59 ~~~~v~dDlf~p~~~~-----y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 59 GLNAFVDDLFNPNLEI-----YKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred CCeEEECcCCCCCHHH-----HhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 2678888887654444 46799999876666666666666554443
No 209
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.99 E-value=5.8e-05 Score=79.11 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC---CC-------------------
Q 022597 102 QVSPDQAQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---PE------------------- 158 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~~------------------- 158 (294)
.+.+..+..|-.++.. .+...++|-+||+ |...+..+... ++
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGS---------------GTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~ 236 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGS---------------GTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEAL 236 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCc---------------cHHHHHHHHHHhcCCCCccccccccccCCCCCHHH
Confidence 4566666666666655 4567899999998 87776655421 11
Q ss_pred -------------------CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 159 -------------------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 159 -------------------~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
..+++|+|+++++++.|++|++.+|+.+.+++.++|+.+..... ..++||+|+.+++
T Consensus 237 w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPP 312 (702)
T PRK11783 237 WQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCC
Confidence 23799999999999999999999999999999999998753221 1357999999977
No 210
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=97.98 E-value=1.9e-05 Score=72.95 Aligned_cols=149 Identities=21% Similarity=0.306 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHhh----hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC---C-CCcEEEEEeCC------
Q 022597 103 VSPDQAQLLAMLVQI----LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---P-ESGCLVACERD------ 168 (294)
Q Consensus 103 v~~~~~~lL~~l~~~----~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~-~~~~v~~id~~------ 168 (294)
+++..-.-|..+++. .-+.-++|.||.. |.+++.++..+ . .+-+++++|.=
T Consensus 54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~r---------------Ggs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~ 118 (248)
T PF05711_consen 54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWR---------------GGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEP 118 (248)
T ss_dssp SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TT---------------SHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS-
T ss_pred cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCC---------------CHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCC
Confidence 445544444444432 2345899999999 87776654433 1 24468888741
Q ss_pred --------------------hHHHHHHHHHHHHhCC-CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-ccchHHH
Q 022597 169 --------------------ARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-KRMYQEY 226 (294)
Q Consensus 169 --------------------~~~~~~A~~~~~~~gl-~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-~~~~~~~ 226 (294)
.-..+..++++++.|+ .++++++.|...+.++.. +.+++-++.+|.+ -+.....
T Consensus 119 ~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~----p~~~IAll~lD~DlYesT~~a 194 (248)
T PF05711_consen 119 DEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDA----PIERIALLHLDCDLYESTKDA 194 (248)
T ss_dssp -CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-----TT--EEEEEE---SHHHHHHH
T ss_pred ccccccccchhhhhhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccC----CCccEEEEEEeccchHHHHHH
Confidence 1135556666766675 568999999999887654 2467888888887 3446778
Q ss_pred HHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeec
Q 022597 227 FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI 284 (294)
Q Consensus 227 ~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~ 284 (294)
++.+.+.|.|||+|++||..+.| .+.|+.+|.+... +...+.++
T Consensus 195 Le~lyprl~~GGiIi~DDY~~~g----------cr~AvdeF~~~~g----i~~~l~~i 238 (248)
T PF05711_consen 195 LEFLYPRLSPGGIIIFDDYGHPG----------CRKAVDEFRAEHG----ITDPLHPI 238 (248)
T ss_dssp HHHHGGGEEEEEEEEESSTTTHH----------HHHHHHHHHHHTT------S--EE-
T ss_pred HHHHHhhcCCCeEEEEeCCCChH----------HHHHHHHHHHHcC----CCCccEEe
Confidence 88999999999999999985422 3467888865532 23335566
No 211
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.97 E-value=4.1e-05 Score=71.42 Aligned_cols=76 Identities=21% Similarity=0.210 Sum_probs=64.2
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++..|||||.|| |..|..+..+ +.+|++||+|+.++....+.++....+++.++++||...
T Consensus 57 k~tD~VLEvGPGT---------------GnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 57 KPTDVVLEVGPGT---------------GNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred CCCCEEEEeCCCC---------------CHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 3455899999999 9999999987 579999999999999999999877777999999999865
Q ss_pred hHHHHhhcCCCCceeEEEEcCC
Q 022597 198 SLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
. +...||.++.+.+
T Consensus 119 ~--------d~P~fd~cVsNlP 132 (315)
T KOG0820|consen 119 T--------DLPRFDGCVSNLP 132 (315)
T ss_pred C--------CCcccceeeccCC
Confidence 3 1256898887654
No 212
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.94 E-value=2.4e-05 Score=71.05 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=69.7
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
+.-|||||||+ |.++-.+... +-..+++|+|+.|+++|.+ ++ ++ -.++++|.-+-+
T Consensus 51 ~~~iLDIGCGs---------------GLSg~vL~~~---Gh~wiGvDiSpsML~~a~~--~e--~e--gdlil~DMG~Gl 106 (270)
T KOG1541|consen 51 SGLILDIGCGS---------------GLSGSVLSDS---GHQWIGVDISPSMLEQAVE--RE--LE--GDLILCDMGEGL 106 (270)
T ss_pred CcEEEEeccCC---------------CcchheeccC---CceEEeecCCHHHHHHHHH--hh--hh--cCeeeeecCCCC
Confidence 55899999999 9887665542 4578999999999999987 22 22 256777776544
Q ss_pred HHHhhcCCCCceeEEEE--------cC------CccchHHHHHHHHhcccCCeEEEEe
Q 022597 200 KALILNGEASSYDFAFV--------DA------EKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfi--------D~------~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+.- .++||-++. ++ ++.....||..+...|++|+..|+.
T Consensus 107 pfr-----pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 107 PFR-----PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred CCC-----CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 432 689998863 22 2444677899899999999888774
No 213
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.94 E-value=7.5e-05 Score=67.12 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=65.8
Q ss_pred EEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHH
Q 022597 123 CIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL 202 (294)
Q Consensus 123 vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l 202 (294)
|.||||-- ||.++++.+.-. ..+++++|+++..++.|++++++.|+.++++++.||..+.++.
T Consensus 1 vaDIGtDH---------------gyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~- 63 (205)
T PF04816_consen 1 VADIGTDH---------------GYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP- 63 (205)
T ss_dssp EEEET-ST---------------THHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-
T ss_pred Cceeccch---------------hHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-
Confidence 67999999 999999999743 5689999999999999999999999999999999999887653
Q ss_pred hhcCCCCceeEEEEcC-CccchHHHHHHHHhcccCCeEEE
Q 022597 203 ILNGEASSYDFAFVDA-EKRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 203 ~~~~~~~~fD~vfiD~-~~~~~~~~~~~~~~lLkpgG~iv 241 (294)
.+..|.|++-+ +..-..++++.....++....+|
T Consensus 64 -----~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 64 -----GEDVDTIVIAGMGGELIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp -----GG---EEEEEEE-HHHHHHHHHHTGGGGTT--EEE
T ss_pred -----CCCCCEEEEecCCHHHHHHHHHhhHHHhccCCeEE
Confidence 23378876643 33334445554444443333333
No 214
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.92 E-value=6.7e-05 Score=70.40 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=83.5
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC------CCCcEEEEEeCChHHHH
Q 022597 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL------PESGCLVACERDARSLE 173 (294)
Q Consensus 100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~------~~~~~v~~id~~~~~~~ 173 (294)
+.-.++..++++..++...++.+|+|-.||+ |...+.+...+ .....++|+|+++..+.
T Consensus 27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGs---------------G~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~ 91 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGS---------------GGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVA 91 (311)
T ss_dssp GC---HHHHHHHHHHHTT-TTEEEEETT-TT---------------SHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHH
T ss_pred eeehHHHHHHHHHhhhhccccceeechhhhH---------------HHHHHHHHHhhcccccccccceeEeecCcHHHHH
Confidence 4456677899999999888888999999999 88877777643 23679999999999999
Q ss_pred HHHHHHHHhCCCCc-EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc------------------------chHHHHH
Q 022597 174 VAKKYYERAGVSHK-VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------------MYQEYFE 228 (294)
Q Consensus 174 ~A~~~~~~~gl~~~-v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~------------------------~~~~~~~ 228 (294)
.|+-++.-.|.... ..+..+|........ ...+||+|+.+++.. ....+++
T Consensus 92 la~~nl~l~~~~~~~~~i~~~d~l~~~~~~----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~ 167 (311)
T PF02384_consen 92 LAKLNLLLHGIDNSNINIIQGDSLENDKFI----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIE 167 (311)
T ss_dssp HHHHHHHHTTHHCBGCEEEES-TTTSHSCT----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHH
T ss_pred HHHhhhhhhccccccccccccccccccccc----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHH
Confidence 99988876665433 468888876432110 136899999886511 0125778
Q ss_pred HHHhcccCCeEEE
Q 022597 229 LLLQLIRVGGIIV 241 (294)
Q Consensus 229 ~~~~lLkpgG~iv 241 (294)
.+...|++||.++
T Consensus 168 ~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 168 HALSLLKPGGRAA 180 (311)
T ss_dssp HHHHTEEEEEEEE
T ss_pred HHHhhccccccee
Confidence 8999999999643
No 215
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.90 E-value=4.9e-05 Score=74.48 Aligned_cols=110 Identities=18% Similarity=0.285 Sum_probs=88.0
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...++.||||..+.. |.-|.+||.-+...|.|++-|.+...++..+.++.+.|+.+ ..+...|.
T Consensus 238 ~Pq~gERIlDmcAAP---------------GGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~ 301 (460)
T KOG1122|consen 238 DPQPGERILDMCAAP---------------GGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDG 301 (460)
T ss_pred CCCCCCeecchhcCC---------------CchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCc
Confidence 345667999999999 88999999999888999999999999999999999999875 55556666
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcccCCeEEEEecc
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~-------------------------~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+...... .++||.|.+|++... ..++|..+.+++++||+||....
T Consensus 302 ~ef~~~~~----~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 302 REFPEKEF----PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred cccccccc----CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 54322111 348999999976111 35677888899999999998876
No 216
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.89 E-value=7e-05 Score=63.53 Aligned_cols=110 Identities=17% Similarity=0.283 Sum_probs=74.5
Q ss_pred EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC------------ccchHHHHH
Q 022597 161 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFE 228 (294)
Q Consensus 161 ~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~------------~~~~~~~~~ 228 (294)
+|+++|+.++.++.+++.+++.++.+++++++..=......+. .+++|+++.+-+ .......++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP----EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 6899999999999999999999999999999987665443331 248999976632 223567888
Q ss_pred HHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEE
Q 022597 229 LLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM 281 (294)
Q Consensus 229 ~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~ 281 (294)
.++++|+|||+|++- .+.|.-. ......++.+|.+.+ +...|.+..
T Consensus 77 ~al~lL~~gG~i~iv--~Y~GH~g----G~eE~~av~~~~~~L-~~~~~~V~~ 122 (140)
T PF06962_consen 77 AALELLKPGGIITIV--VYPGHPG----GKEESEAVEEFLASL-DQKEFNVLK 122 (140)
T ss_dssp HHHHHEEEEEEEEEE--E--STCH----HHHHHHHHHHHHHTS--TTTEEEEE
T ss_pred HHHHhhccCCEEEEE--EeCCCCC----CHHHHHHHHHHHHhC-CcceEEEEE
Confidence 889999999999884 5566421 123456788888777 333555543
No 217
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.87 E-value=0.00015 Score=65.75 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=81.3
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++.|||+||-|- |...-.+-++ ++.- -+-||.+|+.++..+..-- +-.++|.+..|...+
T Consensus 100 tkggrvLnVGFGM---------------gIidT~iQe~-~p~~-H~IiE~hp~V~krmr~~gw--~ek~nViil~g~WeD 160 (271)
T KOG1709|consen 100 TKGGRVLNVGFGM---------------GIIDTFIQEA-PPDE-HWIIEAHPDVLKRMRDWGW--REKENVIILEGRWED 160 (271)
T ss_pred hCCceEEEeccch---------------HHHHHHHhhc-CCcc-eEEEecCHHHHHHHHhccc--ccccceEEEecchHh
Confidence 6778999999988 7666555554 3344 4569999998876655432 134789999999999
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccc---hHHHHHHHHhcccCCeEEEEecccC
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRM---YQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~---~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
.++.+. ++.||=|+-|...+. ...+++.+.++|||+|++-+.|-+-
T Consensus 161 vl~~L~----d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 161 VLNTLP----DKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred hhcccc----ccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 998875 567999999987444 4567778889999999999877653
No 218
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=8.9e-05 Score=74.25 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=91.4
Q ss_pred CCCCCCCHHHHHHHHHHHhh----hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH
Q 022597 98 GSQMQVSPDQAQLLAMLVQI----LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE 173 (294)
Q Consensus 98 ~~~~~v~~~~~~lL~~l~~~----~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~ 173 (294)
++..|.....++.|...+.- ...+.++|+.||| |.+++++++.. .+|+++|++++.++
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGT---------------G~iglala~~~---~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGT---------------GTIGLALARGV---KRVIGVEISPDAVE 419 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecC---------------Cceehhhhccc---cceeeeecChhhcc
Confidence 34557777778888887754 3446899999999 99999999865 69999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee-EEEEcCCccch-HHHHHHHHhcccCCeEEE
Q 022597 174 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD-FAFVDAEKRMY-QEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 174 ~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD-~vfiD~~~~~~-~~~~~~~~~lLkpgG~iv 241 (294)
.|+++.+.+|++ +.+|+.|-+.+.++.+.... .++=+ .+++|++.... ..++..+...-++--++.
T Consensus 420 dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~-~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvy 487 (534)
T KOG2187|consen 420 DAEKNAQINGIS-NATFIVGQAEDLFPSLLTPC-CDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVY 487 (534)
T ss_pred hhhhcchhcCcc-ceeeeecchhhccchhcccC-CCCCceEEEECCCcccccHHHHHHHHhccCccceEE
Confidence 999999999998 59999999988887764322 12345 67889875443 444444444433444443
No 219
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00016 Score=70.41 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=63.1
Q ss_pred EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----------cchHHHHHH
Q 022597 161 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYFEL 229 (294)
Q Consensus 161 ~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----------~~~~~~~~~ 229 (294)
.++|+|+|+++++.|+.|.+++|+.+.|+|.++|+.+.-+. .+.+|+|+.+++- .-|.++.+.
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~ 329 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------LEEYGVVISNPPYGERLGSEALVAKLYREFGRT 329 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHH
Confidence 37899999999999999999999999999999999865321 2689999999871 147777777
Q ss_pred HHhcccCCeEEEEe
Q 022597 230 LLQLIRVGGIIVID 243 (294)
Q Consensus 230 ~~~lLkpgG~ivid 243 (294)
+.+.++..+..|+.
T Consensus 330 lk~~~~~ws~~v~t 343 (381)
T COG0116 330 LKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHhcCCceEEEE
Confidence 77888877777664
No 220
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.78 E-value=0.0028 Score=58.39 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=64.8
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
+.+++||=+|=.- ..|++++...+ ..+|+.+|+|++.++..++..++.|+. ++.++.|.++
T Consensus 43 L~gk~il~lGDDD----------------LtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~ 103 (243)
T PF01861_consen 43 LEGKRILFLGDDD----------------LTSLALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRD 103 (243)
T ss_dssp STT-EEEEES-TT-----------------HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS
T ss_pred ccCCEEEEEcCCc----------------HHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccc
Confidence 4578999999764 56677776544 579999999999999999999999996 9999999998
Q ss_pred hHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeE
Q 022597 198 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGI 239 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ 239 (294)
-++.-. .++||.+|.|++ .+...-|+......|+.-|-
T Consensus 104 ~LP~~~----~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~ 143 (243)
T PF01861_consen 104 PLPEEL----RGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGC 143 (243)
T ss_dssp ---TTT----SS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-
T ss_pred cCCHHH----hcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 876521 589999999997 45677888888888887763
No 221
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.76 E-value=7.7e-05 Score=68.11 Aligned_cols=93 Identities=12% Similarity=0.125 Sum_probs=58.5
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE-EEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~-~~~gda~~ 197 (294)
++++|||+|||| |..+..+++. + ..+|+++|.+++++.. .++. ..++. +...|...
T Consensus 75 ~~~~vlDiG~gt---------------G~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~---~~~v~~~~~~ni~~ 131 (228)
T TIGR00478 75 KNKIVLDVGSST---------------GGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQ---DERVKVLERTNIRY 131 (228)
T ss_pred CCCEEEEcccCC---------------CHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhc---CCCeeEeecCCccc
Confidence 456899999999 9999999885 2 4789999999987654 1221 12332 22223331
Q ss_pred hH-HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 198 SL-KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 198 ~l-~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.. .... .+-..+|++|+.. ...+..+.++|+| |.+++
T Consensus 132 ~~~~~~~--~d~~~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 132 VTPADIF--PDFATFDVSFISL-----ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred CCHhHcC--CCceeeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence 11 1110 0124788888754 2357788899999 66553
No 222
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.73 E-value=0.00012 Score=60.48 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=51.0
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++|+|||+ |+.+++++...+ .++++++|.++++.+.++++++.+++. +++++.....+
T Consensus 1 ~vlDiGa~~---------------G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANI---------------GDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCc---------------cHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999 999999998765 569999999999999999999998886 48888766543
No 223
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.71 E-value=0.00023 Score=67.20 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=71.0
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHC----C---CCcEEEEEeCChHHHHHHHHH--------------
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL----P---ESGCLVACERDARSLEVAKKY-------------- 178 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~----~---~~~~v~~id~~~~~~~~A~~~-------------- 178 (294)
+-+|...||.| |--...||-.+ + .+.+|+|+|+|++.++.|++-
T Consensus 116 ~irIWSAgCSt---------------GEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~ 180 (287)
T PRK10611 116 EYRVWSAAAST---------------GEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQ 180 (287)
T ss_pred CEEEEEccccC---------------CHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHH
Confidence 35999999999 86443333322 2 136899999999999999764
Q ss_pred ----HHHh-----C-------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEE-----cCCccchHHHHHHHHhcccCC
Q 022597 179 ----YERA-----G-------VSHKVKIKHGLAADSLKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVG 237 (294)
Q Consensus 179 ----~~~~-----g-------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfi-----D~~~~~~~~~~~~~~~lLkpg 237 (294)
+.+. | +...|+|...|..+.... ..+.||+||. ....+.....++.+.+.|+||
T Consensus 181 ~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 181 LQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred HHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 1110 1 234566766666541100 1478999986 234566789999999999999
Q ss_pred eEEEEec
Q 022597 238 GIIVIDN 244 (294)
Q Consensus 238 G~ivid~ 244 (294)
|++++..
T Consensus 256 G~L~lG~ 262 (287)
T PRK10611 256 GLLFAGH 262 (287)
T ss_pred cEEEEeC
Confidence 9998743
No 224
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.69 E-value=0.00048 Score=65.49 Aligned_cols=85 Identities=22% Similarity=0.156 Sum_probs=69.3
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++..++|.-+|. |.-+..|+..++ +++|+++|.|++.++.|++.++. ..+++++++++..+
T Consensus 19 ~~ggiyVD~TlG~---------------GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 19 KPDGIYIDCTLGF---------------GGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDNFAN 80 (305)
T ss_pred CCCCEEEEeCCCC---------------hHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCCHHH
Confidence 3556899999999 888999999887 49999999999999999998875 35689999999988
Q ss_pred hHHHHhhcCCCCceeEEEEcCCcc
Q 022597 198 SLKALILNGEASSYDFAFVDAEKR 221 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~ 221 (294)
..+.+...+ ..++|.|+.|.+..
T Consensus 81 l~~~l~~~~-~~~vDgIl~DLGvS 103 (305)
T TIGR00006 81 FFEHLDELL-VTKIDGILVDLGVS 103 (305)
T ss_pred HHHHHHhcC-CCcccEEEEeccCC
Confidence 766553322 36799999987643
No 225
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.69 E-value=0.00028 Score=71.42 Aligned_cols=83 Identities=13% Similarity=0.054 Sum_probs=58.7
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-------CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 192 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-------~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~ 192 (294)
..+|+|.|||+ |...+.++..++. ...++++|+++..++.++.++...+. ..+.+..
T Consensus 32 ~~~ilDP~cGs---------------G~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~ 95 (524)
T TIGR02987 32 KTKIIDPCCGD---------------GRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVIN 95 (524)
T ss_pred ceEEEeCCCCc---------------cHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeee
Confidence 45899999999 9888888776641 25789999999999999999987762 2356666
Q ss_pred cchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 193 GLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 193 gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
+|......... ....+.||+|+.+++
T Consensus 96 ~d~l~~~~~~~-~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 96 FNSLSYVLLNI-ESYLDLFDIVITNPP 121 (524)
T ss_pred ccccccccccc-ccccCcccEEEeCCC
Confidence 66543211110 111368999998876
No 226
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.68 E-value=0.0003 Score=67.21 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=72.2
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-----cEEEEEc
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHG 193 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-----~v~~~~g 193 (294)
+...++++|||- |.-.+-.-.+- -+.++++|+..-.++.|+++++...-.. .+.|+.+
T Consensus 117 ~~~~~~~LgCGK---------------GGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~ 179 (389)
T KOG1975|consen 117 RGDDVLDLGCGK---------------GGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA 179 (389)
T ss_pred cccccceeccCC---------------cccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe
Confidence 456799999999 55544444432 3689999999999999999988653332 3788888
Q ss_pred chhh-hHHHHhhcCCCCceeEE---EEcCC----ccchHHHHHHHHhcccCCeEEE
Q 022597 194 LAAD-SLKALILNGEASSYDFA---FVDAE----KRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 194 da~~-~l~~l~~~~~~~~fD~v---fiD~~----~~~~~~~~~~~~~lLkpgG~iv 241 (294)
|... .+..+... .+.+||+| |.-+. .......+..+...|+|||+++
T Consensus 180 Dc~~~~l~d~~e~-~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 180 DCFKERLMDLLEF-KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred ccchhHHHHhccC-CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 8754 23333221 13349988 32221 3345677888899999999998
No 227
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.67 E-value=0.00024 Score=65.60 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=90.2
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY 179 (294)
Q Consensus 100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~ 179 (294)
...+++...+-+...+...+...|||||+|+ |..|..++... .+++++|.|++..+..++.+
T Consensus 11 nFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~---------------G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~ 72 (262)
T PF00398_consen 11 NFLVDPNIADKIVDALDLSEGDTVLEIGPGP---------------GALTRELLKRG---KRVIAVEIDPDLAKHLKERF 72 (262)
T ss_dssp SEEEHHHHHHHHHHHHTCGTTSEEEEESSTT---------------SCCHHHHHHHS---SEEEEEESSHHHHHHHHHHC
T ss_pred CeeCCHHHHHHHHHhcCCCCCCEEEEeCCCC---------------ccchhhHhccc---CcceeecCcHhHHHHHHHHh
Confidence 4567888888888888888889999999999 99999999875 79999999999998888766
Q ss_pred HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhccc---CCeEEEEecccCCCcccCcc
Q 022597 180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIR---VGGIIVIDNVLWHGKVADQM 255 (294)
Q Consensus 180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLk---pgG~ivid~vl~~g~v~~~~ 255 (294)
. ..++++++++|+.++-..... ......|+.+.+-.-...++..+...-+ ...++++..=.+.--++.|.
T Consensus 73 ~---~~~~~~vi~~D~l~~~~~~~~---~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a~pg 145 (262)
T PF00398_consen 73 A---SNPNVEVINGDFLKWDLYDLL---KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLAKPG 145 (262)
T ss_dssp T---TCSSEEEEES-TTTSCGGGHC---SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHTSTT
T ss_pred h---hcccceeeecchhccccHHhh---cCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccCCCC
Confidence 5 456899999999875211000 2345677776654434456666655323 33555554433333344444
No 228
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.66 E-value=0.00046 Score=62.80 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=75.0
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
.+.++.+||-+|+.+ |...-.++....++|.|+++|.++...+..-...++ ..+|--+.+|+
T Consensus 70 ~ik~gskVLYLGAas---------------GTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DA 131 (229)
T PF01269_consen 70 PIKPGSKVLYLGAAS---------------GTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDA 131 (229)
T ss_dssp S--TT-EEEEETTTT---------------SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-T
T ss_pred CCCCCCEEEEecccC---------------CCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccC
Confidence 345667999999999 999999999998899999999999876554444443 45788899999
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHH-HHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQE-YFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~-~~~~~~~lLkpgG~ivid 243 (294)
..-.+-.. --+..|+||.|...++..+ +...+...||+||.+++-
T Consensus 132 r~P~~Y~~---lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 132 RHPEKYRM---LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TSGGGGTT---TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CChHHhhc---ccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 74221100 1368999999987665544 444555799999988863
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.64 E-value=0.00046 Score=62.05 Aligned_cols=110 Identities=21% Similarity=0.198 Sum_probs=67.1
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH-------hCC-C
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-------AGV-S 185 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~-------~gl-~ 185 (294)
.+.+.+....+|+|||. |-..+..+...+ -.+.+|||+.+...+.|+...+. .|. .
T Consensus 37 ~~~l~~~dvF~DlGSG~---------------G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~ 100 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGV---------------GNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRP 100 (205)
T ss_dssp HTT--TT-EEEEES-TT---------------SHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB--
T ss_pred HhCCCCCCEEEECCCCC---------------CHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34455667999999999 998888777653 34589999999999888765443 233 3
Q ss_pred CcEEEEEcchhhh--HHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEec
Q 022597 186 HKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 186 ~~v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.++++.+||..+. .+.. -..-|+||++.. .+.....+......||+|..||--.
T Consensus 101 ~~v~l~~gdfl~~~~~~~~-----~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 101 GKVELIHGDFLDPDFVKDI-----WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp -EEEEECS-TTTHHHHHHH-----GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred ccceeeccCccccHhHhhh-----hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 5788999998653 2332 245799999864 3444455566678899998887543
No 230
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.61 E-value=0.00011 Score=63.49 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=61.0
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++.+|||+||++ |..+-.+.....+.++|+++|+.+. ... ..+..+.+|..+.
T Consensus 23 ~~~~vlDlG~aP---------------GGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~ 75 (181)
T PF01728_consen 23 KGFTVLDLGAAP---------------GGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNP 75 (181)
T ss_dssp TTEEEEEET-TT---------------SHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEE
T ss_pred cccEEEEcCCcc---------------cceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchh
Confidence 346999999999 8888888877645689999999987 111 3456666665431
Q ss_pred --HHHHhhcC--CCCceeEEEEcCCc--------------cchHHHHHHHHhcccCCeEEEEe
Q 022597 199 --LKALILNG--EASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 199 --l~~l~~~~--~~~~fD~vfiD~~~--------------~~~~~~~~~~~~lLkpgG~ivid 243 (294)
...+.... ..+++|+|+.|... +-....+..+.+.|+|||.+|+-
T Consensus 76 ~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 76 ENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp EHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred hHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 11111110 13699999999721 11233444556789999988875
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.59 E-value=0.00039 Score=58.28 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=56.7
Q ss_pred HHHHHHHHhh----hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC---CCCcEEEEEeCChHHHHHHHHHHH
Q 022597 108 AQLLAMLVQI----LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYE 180 (294)
Q Consensus 108 ~~lL~~l~~~----~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~~~~~v~~id~~~~~~~~A~~~~~ 180 (294)
++++..+... .+..+|+|+|||. ||.+..++..+ ..+.+|+++|.+++..+.+.+..+
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~---------------GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGK---------------GYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCh---------------hHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 3444444444 5677999999999 99999999833 247899999999999999999999
Q ss_pred HhC--CCCcEEEEEcchh
Q 022597 181 RAG--VSHKVKIKHGLAA 196 (294)
Q Consensus 181 ~~g--l~~~v~~~~gda~ 196 (294)
+.+ ...++++..++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 75 KLGSDLEKRLSFIQGDIA 92 (141)
T ss_pred Hhcchhhccchhhccchh
Confidence 877 5455666665543
No 232
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.57 E-value=0.0011 Score=63.38 Aligned_cols=107 Identities=14% Similarity=0.018 Sum_probs=76.6
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEE--EEcc
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKI--KHGL 194 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~--~~gd 194 (294)
+..++|+|||. |.=+..++.++.. ..+++++|+|.++++.+.+.+....+. .+++ ++||
T Consensus 77 ~~~lIELGsG~---------------~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gd 140 (319)
T TIGR03439 77 GSMLVELGSGN---------------LRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGT 140 (319)
T ss_pred CCEEEEECCCc---------------hHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEec
Confidence 44899999999 8888877777742 467999999999999999999843343 3555 8899
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcC------CccchHHHHHHHHh-cccCCeEEEE
Q 022597 195 AADSLKALILNGEASSYDFAFVDA------EKRMYQEYFELLLQ-LIRVGGIIVI 242 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~------~~~~~~~~~~~~~~-lLkpgG~ivi 242 (294)
+.+.+..+..........++|.-+ .+.....+++.+.+ .|+|||.+++
T Consensus 141 y~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 141 YDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 987765442211123345554322 25557788999998 9999999887
No 233
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.51 E-value=0.00017 Score=64.32 Aligned_cols=105 Identities=20% Similarity=0.309 Sum_probs=63.9
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHC----C----CCcEEEEEeCChHHHHHHHHH-------------
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL----P----ESGCLVACERDARSLEVAKKY------------- 178 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~----~----~~~~v~~id~~~~~~~~A~~~------------- 178 (294)
+-+|...||+| |-=...+|-.+ + ...+|+|.|+|+..++.|++-
T Consensus 32 ~lrIWSagCSt---------------GeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~ 96 (196)
T PF01739_consen 32 PLRIWSAGCST---------------GEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPA 96 (196)
T ss_dssp -EEEEETT-TT---------------THHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HH
T ss_pred CeEEEECCCCC---------------ChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHH
Confidence 34999999999 86444333322 1 135999999999999998652
Q ss_pred -HHH-----hC--------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeE
Q 022597 179 -YER-----AG--------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGI 239 (294)
Q Consensus 179 -~~~-----~g--------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ 239 (294)
.++ .| +.++|+|...|..+..+. .+.||+||.-. +.......++.+...|+|||+
T Consensus 97 ~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~ 170 (196)
T PF01739_consen 97 YLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPP------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGY 170 (196)
T ss_dssp HHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEE
T ss_pred HHHHhccccCCCceeEChHHcCceEEEecccCCCCcc------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCE
Confidence 111 11 125788888887762111 57999998753 345568899999999999999
Q ss_pred EEEecc
Q 022597 240 IVIDNV 245 (294)
Q Consensus 240 ivid~v 245 (294)
+++-..
T Consensus 171 L~lG~s 176 (196)
T PF01739_consen 171 LFLGHS 176 (196)
T ss_dssp EEE-TT
T ss_pred EEEecC
Confidence 998543
No 234
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.50 E-value=0.0011 Score=61.60 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=79.1
Q ss_pred CCCCCCCHHHHHHHHHHH-----hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHH
Q 022597 98 GSQMQVSPDQAQLLAMLV-----QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSL 172 (294)
Q Consensus 98 ~~~~~v~~~~~~lL~~l~-----~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~ 172 (294)
|+-...+.+|.+-|-... ...+..++||||+|. |-.|..++.... +|++.|.|+.|.
T Consensus 68 G~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGd---------------G~VT~~l~~~f~---~v~aTE~S~~Mr 129 (265)
T PF05219_consen 68 GSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGD---------------GEVTERLAPLFK---EVYATEASPPMR 129 (265)
T ss_pred CcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCC---------------cHHHHHHHhhcc---eEEeecCCHHHH
Confidence 333456777754444433 222556899999999 999999988764 799999999874
Q ss_pred HHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc-CC--ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 173 EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD-AE--KRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 173 ~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD-~~--~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
..+++.|+ +++. ..+. .. .+.+||+|-.- .- ......+++.+.+.|+|+|.+++.=|+
T Consensus 130 ----~rL~~kg~----~vl~--~~~w-~~-----~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 130 ----WRLSKKGF----TVLD--IDDW-QQ-----TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred ----HHHHhCCC----eEEe--hhhh-hc-----cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 45555554 3442 2222 11 14689999532 11 234578899999999999999998887
No 235
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.50 E-value=0.0005 Score=65.21 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=48.3
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh-CCCCcEEEEEcchhh-h
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD-S 198 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~-gl~~~v~~~~gda~~-~ 198 (294)
-++||||||.-| .-.+--++. .+.+++|.|+|+..++.|+++++++ +++++|+++.....+ +
T Consensus 104 v~glDIGTGAsc--------------IYpLLg~~~--~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i 167 (299)
T PF05971_consen 104 VRGLDIGTGASC--------------IYPLLGAKL--YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNI 167 (299)
T ss_dssp -EEEEES-TTTT--------------HHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SS
T ss_pred eEeecCCccHHH--------------HHHHHhhhh--cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcccc
Confidence 379999997622 112222222 2689999999999999999999999 999999998765432 3
Q ss_pred HHHHhhcCCCCceeEEEEcCC
Q 022597 199 LKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~ 219 (294)
+..+.. ..+.||+...+++
T Consensus 168 ~~~i~~--~~e~~dftmCNPP 186 (299)
T PF05971_consen 168 FDGIIQ--PNERFDFTMCNPP 186 (299)
T ss_dssp TTTSTT----S-EEEEEE---
T ss_pred chhhhc--ccceeeEEecCCc
Confidence 333322 2468999998876
No 236
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00092 Score=60.14 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=72.2
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++.+|+|+|+.. |.++..+++.++.++.|++||+.|-- .-..|.++++|..+
T Consensus 44 ~~~~~ViDLGAAP---------------GgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~ 96 (205)
T COG0293 44 KPGMVVVDLGAAP---------------GGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITD 96 (205)
T ss_pred cCCCEEEEcCCCC---------------CcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccC
Confidence 3567999999999 88888888888877889999998841 22348999998764
Q ss_pred --hHHHHhhcCCCCceeEEEEcCCc--------cc------hHHHHHHHHhcccCCeEEEEecc
Q 022597 198 --SLKALILNGEASSYDFAFVDAEK--------RM------YQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 198 --~l~~l~~~~~~~~fD~vfiD~~~--------~~------~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+..+...-...++|+|..|..+ .+ -...++.+...|+|||.+++-..
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 33333333234568999999653 11 12344555689999999998754
No 237
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00069 Score=64.01 Aligned_cols=142 Identities=21% Similarity=0.322 Sum_probs=102.5
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CCC-CcEEEEE
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVS-HKVKIKH 192 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl~-~~v~~~~ 192 (294)
.+.++++++-||-|- |..-...++. +.=+.+.-||++...++..++++... |++ .+|.++.
T Consensus 118 s~~npkkvlVVgggD---------------ggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~i 181 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGD---------------GGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLI 181 (337)
T ss_pred cCCCCCeEEEEecCC---------------ccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEe
Confidence 466889999999988 5443333333 32368899999999999999999863 443 5799999
Q ss_pred cchhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe-cccC-CCcccCcccCCcchHH
Q 022597 193 GLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID-NVLW-HGKVADQMVNDAKTIS 263 (294)
Q Consensus 193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid-~vl~-~g~v~~~~~~~~~~~~ 263 (294)
||....++... .++||+|+.|.... ....||+.+.+.||+||+++.- +.+| +-+. -.-
T Consensus 182 GDG~~fl~~~~----~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~---------i~e 248 (337)
T KOG1562|consen 182 GDGFLFLEDLK----ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDY---------IKE 248 (337)
T ss_pred ccHHHHHHHhc----cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHH---------HHH
Confidence 99998888764 58999999986521 2467899999999999998762 2222 1111 123
Q ss_pred HHHHHHHhhhCCCeEEEEeecCC
Q 022597 264 IRNFNKNLMEDERVSISMVPIGD 286 (294)
Q Consensus 264 ir~f~~~l~~~~~~~~~~lp~gd 286 (294)
+|+|-+.+...-.+-.+.+|+-+
T Consensus 249 ~r~~~~~~f~~t~ya~ttvPTyp 271 (337)
T KOG1562|consen 249 GRSFCYVIFDLTAYAITTVPTYP 271 (337)
T ss_pred HHHhHHHhcCccceeeecCCCCc
Confidence 56776667666677778888744
No 238
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.35 E-value=0.0095 Score=45.34 Aligned_cols=105 Identities=22% Similarity=0.299 Sum_probs=68.3
Q ss_pred EEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh-HHH
Q 022597 123 CIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKA 201 (294)
Q Consensus 123 vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~-l~~ 201 (294)
++|+|||+ |... .+....+....++++|.++.++..++......+.. .+.+..++.... ++
T Consensus 52 ~ld~~~g~---------------g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 113 (257)
T COG0500 52 VLDIGCGT---------------GRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLP- 113 (257)
T ss_pred eEEecCCc---------------CHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCC-
Confidence 99999999 8877 34443332248899999999998855544331111 167777776542 11
Q ss_pred HhhcCCC-CceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597 202 LILNGEA-SSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNVLWHG 249 (294)
Q Consensus 202 l~~~~~~-~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~ivid~vl~~g 249 (294)
+ .. ..||++...... ......+..+.+.++|+|.+++.......
T Consensus 114 ~----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 114 F----EDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred C----CCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 1 12 379998433221 11478888899999999999987775443
No 239
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0019 Score=62.59 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=92.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178 (294)
Q Consensus 99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~ 178 (294)
+.|....|..-..........+.+|+|-=+|| |.=++.++...+.. +++.=|+||+.++.+++|
T Consensus 32 P~m~~NRDlsV~~l~~~~~~~~~~v~Dalsat---------------GiRgIRya~E~~~~-~v~lNDisp~Avelik~N 95 (380)
T COG1867 32 PAMEFNRDLSVLVLKAFGKLLPKRVLDALSAT---------------GIRGIRYAVETGVV-KVVLNDISPKAVELIKEN 95 (380)
T ss_pred chhhhccchhHHHHHHhhccCCeEEeeccccc---------------chhHhhhhhhcCcc-EEEEccCCHHHHHHHHHH
Confidence 44555555433322222222277999999999 99999999988633 899999999999999999
Q ss_pred HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
++.+...+ ..++..|+...+... ...||.|=+|+. .....|++.+.+.++.||++.+.
T Consensus 96 v~~N~~~~-~~v~n~DAN~lm~~~-----~~~fd~IDiDPF-GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 96 VRLNSGED-AEVINKDANALLHEL-----HRAFDVIDIDPF-GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred HHhcCccc-ceeecchHHHHHHhc-----CCCccEEecCCC-CCCchHHHHHHHHhhcCCEEEEE
Confidence 99984444 555558998777654 478999988874 23468899999999999999884
No 240
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=97.28 E-value=0.0045 Score=55.44 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHHH
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYE 180 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~~ 180 (294)
+|..-..+..++-..+|..|+|+|+-. |.|++++|...-. ..+|+++|+|-..+.-+...
T Consensus 54 ~p~D~~~yQellw~~~P~lvIE~Gs~~---------------GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-- 116 (237)
T COG3510 54 SPSDMWNYQELLWELQPSLVIEFGSRH---------------GGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-- 116 (237)
T ss_pred CHHHHHHHHHHHHhcCCceeEeecccc---------------CchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--
Confidence 555566677778888999999999999 9999998875422 36899999987665432221
Q ss_pred HhCCCCcEEEEEcchhhh-----HHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEecccCCCcccC
Q 022597 181 RAGVSHKVKIKHGLAADS-----LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD 253 (294)
Q Consensus 181 ~~gl~~~v~~~~gda~~~-----l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~ 253 (294)
..+|.++.|+..+- .+.+ ++ .-+-=+|++|.++ .....-++...++|..|-++++.|-...+.-.+
T Consensus 117 ----~p~i~f~egss~dpai~eqi~~~-~~--~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~ 189 (237)
T COG3510 117 ----VPDILFIEGSSTDPAIAEQIRRL-KN--EYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGP 189 (237)
T ss_pred ----CCCeEEEeCCCCCHHHHHHHHHH-hc--CCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCc
Confidence 34799999987652 1222 11 1223355667663 446677788889999999999988776654321
Q ss_pred --cc-cCCcchHHHHHHHH
Q 022597 254 --QM-VNDAKTISIRNFNK 269 (294)
Q Consensus 254 --~~-~~~~~~~~ir~f~~ 269 (294)
|. ..+....++.+|.+
T Consensus 190 ~~p~~~g~gP~~AVe~ylr 208 (237)
T COG3510 190 VLPWRFGGGPYEAVEAYLR 208 (237)
T ss_pred ccchhcCCChHHHHHHHHH
Confidence 11 22223456666654
No 241
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.27 E-value=0.00055 Score=61.08 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=75.7
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
.+.|+|+|+ |..++..+.+ ..+|+++|.+|...+.|.+|++-.|.. ++.++.||+.++-
T Consensus 35 ~~~DLGaGs---------------GiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~-- 93 (252)
T COG4076 35 TFADLGAGS---------------GILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD-- 93 (252)
T ss_pred ceeeccCCc---------------chHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc--
Confidence 789999999 9888877776 469999999999999999999877765 6999999998762
Q ss_pred HhhcCCCCceeEEEE---cCC--ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 202 LILNGEASSYDFAFV---DAE--KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 202 l~~~~~~~~fD~vfi---D~~--~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
-+..|.|+. |.. .+.....+..++..||.++.++-..+
T Consensus 94 ------fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v 136 (252)
T COG4076 94 ------FENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEV 136 (252)
T ss_pred ------ccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHH
Confidence 245677753 221 33455677778889999988876554
No 242
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.0048 Score=58.56 Aligned_cols=86 Identities=26% Similarity=0.261 Sum_probs=70.8
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.+....+|.-.|. |.-+-.++..+++.++++++|.|++.++.|++.++..+ +++++++++..+
T Consensus 22 ~~~giyiD~TlG~---------------GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~ 84 (314)
T COG0275 22 KPDGIYIDGTLGA---------------GGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFAN 84 (314)
T ss_pred CCCcEEEEecCCC---------------cHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHH
Confidence 3445899988888 88888899999888999999999999999999998755 689999999887
Q ss_pred hHHHHhhcCCCCceeEEEEcCCcc
Q 022597 198 SLKALILNGEASSYDFAFVDAEKR 221 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~ 221 (294)
....+...+ .+++|-|+.|-+..
T Consensus 85 l~~~l~~~~-i~~vDGiL~DLGVS 107 (314)
T COG0275 85 LAEALKELG-IGKVDGILLDLGVS 107 (314)
T ss_pred HHHHHHhcC-CCceeEEEEeccCC
Confidence 766554433 57899999987643
No 243
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.15 E-value=0.0021 Score=60.08 Aligned_cols=104 Identities=15% Similarity=0.238 Sum_probs=70.2
Q ss_pred CCeEEEEccccccccccccccccCCCcH----HHHHHHHHCCC----CcEEEEEeCChHHHHHHHHHHHH-----hCCC-
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYER-----AGVS- 185 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~----~sl~la~~~~~----~~~v~~id~~~~~~~~A~~~~~~-----~gl~- 185 (294)
+-+|...||+| |- .++.+.+..+. ..+|+|.|+|...++.|++-.=. .+++
T Consensus 97 ~irIWSaaCSt---------------GEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~ 161 (268)
T COG1352 97 PIRIWSAACST---------------GEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPP 161 (268)
T ss_pred ceEEEecCcCC---------------CccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCH
Confidence 55999999999 85 34444445542 57899999999999988642100 1111
Q ss_pred ----------------------CcEEEEEcchhhhHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCe
Q 022597 186 ----------------------HKVKIKHGLAADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGG 238 (294)
Q Consensus 186 ----------------------~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG 238 (294)
+.|+|...|..+... . .+.||+||+- -+++...+.++.....|+|||
T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~-----~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 162 ELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-F-----LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred HHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-c-----cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence 235555555443221 1 5779999864 235567789999999999999
Q ss_pred EEEEec
Q 022597 239 IIVIDN 244 (294)
Q Consensus 239 ~ivid~ 244 (294)
++++-.
T Consensus 236 ~LflG~ 241 (268)
T COG1352 236 LLFLGH 241 (268)
T ss_pred EEEEcc
Confidence 999843
No 244
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.14 E-value=0.0019 Score=61.63 Aligned_cols=88 Identities=22% Similarity=0.169 Sum_probs=62.3
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
..++..++|.-.|. |.-+.+++..+++ ++|+++|.|+++++.|++.++. ..+++.+++++..
T Consensus 18 ~~~~g~~vD~T~G~---------------GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~--~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 18 PKPGGIYVDCTFGG---------------GGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK--FDDRFIFIHGNFS 79 (310)
T ss_dssp --TT-EEEETT-TT---------------SHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC--CCTTEEEEES-GG
T ss_pred cCCCceEEeecCCc---------------HHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh--ccceEEEEeccHH
Confidence 44556899988888 8888999998885 9999999999999999888765 3679999999998
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCccc
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKRM 222 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~~ 222 (294)
+....+.......++|.|++|.+...
T Consensus 80 ~l~~~l~~~~~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 80 NLDEYLKELNGINKVDGILFDLGVSS 105 (310)
T ss_dssp GHHHHHHHTTTTS-EEEEEEE-S--H
T ss_pred HHHHHHHHccCCCccCEEEEccccCH
Confidence 77665554423578999999987543
No 245
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.13 E-value=0.0011 Score=59.97 Aligned_cols=125 Identities=16% Similarity=0.210 Sum_probs=72.9
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY 179 (294)
Q Consensus 100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~ 179 (294)
+..+.|- -.++.++....+...|-|+|||. + .||..++..-+|...|+-+.
T Consensus 54 ~WP~nPv-d~iI~~l~~~~~~~viaD~GCGd---------------A----~la~~~~~~~~V~SfDLva~--------- 104 (219)
T PF05148_consen 54 KWPVNPV-DVIIEWLKKRPKSLVIADFGCGD---------------A----KLAKAVPNKHKVHSFDLVAP--------- 104 (219)
T ss_dssp TSSS-HH-HHHHHHHCTS-TTS-EEEES-TT--------------------HHHHH--S---EEEEESS-S---------
T ss_pred cCCCCcH-HHHHHHHHhcCCCEEEEECCCch---------------H----HHHHhcccCceEEEeeccCC---------
Confidence 4456665 35566666655566999999988 5 44566665568999998653
Q ss_pred HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccC
Q 022597 180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVN 257 (294)
Q Consensus 180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~ 257 (294)
.+. +...|.....- ++++.|+++.-.. ..+|..+++.+.+.|||||.+.|-.|- .+..
T Consensus 105 -----n~~--Vtacdia~vPL------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~--SRf~----- 164 (219)
T PF05148_consen 105 -----NPR--VTACDIANVPL------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK--SRFE----- 164 (219)
T ss_dssp -----STT--EEES-TTS-S--------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG--GG-S-----
T ss_pred -----CCC--EEEecCccCcC------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec--ccCc-----
Confidence 223 55577754421 2689999875543 567999999999999999999998873 1111
Q ss_pred CcchHHHHHHHHHhhhCCCeEE
Q 022597 258 DAKTISIRNFNKNLMEDERVSI 279 (294)
Q Consensus 258 ~~~~~~ir~f~~~l~~~~~~~~ 279 (294)
.+..|.+.+..- +|..
T Consensus 165 -----~~~~F~~~~~~~-GF~~ 180 (219)
T PF05148_consen 165 -----NVKQFIKALKKL-GFKL 180 (219)
T ss_dssp ------HHHHHHHHHCT-TEEE
T ss_pred -----CHHHHHHHHHHC-CCeE
Confidence 357787776432 4443
No 246
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.09 E-value=0.004 Score=56.63 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=76.8
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
.+.++.||||-. ||.+.++.+..+ ..++++.|+++..++.|.++++++++.+++++..+|....
T Consensus 16 ~~~~iaDIGsDH---------------AYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~ 79 (226)
T COG2384 16 QGARIADIGSDH---------------AYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV 79 (226)
T ss_pred cCCceeeccCch---------------hHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc
Confidence 445699999999 999999999765 6789999999999999999999999999999999998655
Q ss_pred HHHHhhcCCCCceeEEEEcC-CccchHHHHHHHHhccc
Q 022597 199 LKALILNGEASSYDFAFVDA-EKRMYQEYFELLLQLIR 235 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~-~~~~~~~~~~~~~~lLk 235 (294)
+.. ++.+|.+.+-+ +..-..++++.-...|+
T Consensus 80 l~~------~d~~d~ivIAGMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 80 LEL------EDEIDVIVIAGMGGTLIREILEEGKEKLK 111 (226)
T ss_pred cCc------cCCcCEEEEeCCcHHHHHHHHHHhhhhhc
Confidence 432 45899987754 33445666666666555
No 247
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.08 E-value=0.0026 Score=59.43 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=61.2
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+++|||+|+|. |....+.....+.-.+++++|.|+.+.+.++..++...-....... ..
T Consensus 32 f~P~~vLD~GsGp---------------Gta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~--- 92 (274)
T PF09243_consen 32 FRPRSVLDFGSGP---------------GTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RV--- 92 (274)
T ss_pred CCCceEEEecCCh---------------HHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hh---
Confidence 3567999999999 9877777777665578999999999999999987754321111111 10
Q ss_pred hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccC
Q 022597 198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRV 236 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkp 236 (294)
..... .+..+.|+|++..- .....++++.++..+.+
T Consensus 93 ~~~~~---~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 93 LYRDF---LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP 133 (274)
T ss_pred hhccc---ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC
Confidence 11000 01234488876421 24456677777776655
No 248
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.95 E-value=0.0051 Score=63.93 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=71.7
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHC-------CC----CcEEEEEeCCh---HHH-----------HHH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-------PE----SGCLVACERDA---RSL-----------EVA 175 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-------~~----~~~v~~id~~~---~~~-----------~~A 175 (294)
-+|+|+|-|+ |+..+...+.. ++ .-+++++|..| +.+ +.+
T Consensus 59 ~~i~e~gfG~---------------G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~ 123 (662)
T PRK01747 59 FVIAETGFGT---------------GLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLA 123 (662)
T ss_pred EEEEecCcch---------------HHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHH
Confidence 3899999999 99888776554 21 24789999765 222 222
Q ss_pred HHHHHH-----hCC------CC--cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccc-hHHHHHHHHhcccC
Q 022597 176 KKYYER-----AGV------SH--KVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRM-YQEYFELLLQLIRV 236 (294)
Q Consensus 176 ~~~~~~-----~gl------~~--~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~-~~~~~~~~~~lLkp 236 (294)
++..+. .|+ .+ .+++..||+.+.++.+ ...+|.+|.|+- +++ -.++|..+.++++|
T Consensus 124 ~~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~-----~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~ 198 (662)
T PRK01747 124 EQLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELLPQL-----DARADAWFLDGFAPAKNPDMWSPNLFNALARLARP 198 (662)
T ss_pred HHHHHhCCccCCCceEEEecCCcEEEEEEecCHHHHHHhc-----cccccEEEeCCCCCccChhhccHHHHHHHHHHhCC
Confidence 222221 122 11 4567889999998877 467999999964 222 47899999999999
Q ss_pred CeEEEEe
Q 022597 237 GGIIVID 243 (294)
Q Consensus 237 gG~ivid 243 (294)
||.++-.
T Consensus 199 ~~~~~t~ 205 (662)
T PRK01747 199 GATLATF 205 (662)
T ss_pred CCEEEEe
Confidence 9999854
No 249
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.94 E-value=0.012 Score=56.82 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
-...+|+|.|. |..+-.+....| ++-+++.+...+..++.++. .| |+.+.||....+
T Consensus 178 v~~avDvGgGi---------------G~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~ 234 (342)
T KOG3178|consen 178 VNVAVDVGGGI---------------GRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT 234 (342)
T ss_pred CceEEEcCCcH---------------hHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccC
Confidence 36889999999 999988888665 58899999999888777775 44 777778876543
Q ss_pred HHHhhcCCCCceeEEEE----cC-CccchHHHHHHHHhcccCCeEEEE-ecccCC
Q 022597 200 KALILNGEASSYDFAFV----DA-EKRMYQEYFELLLQLIRVGGIIVI-DNVLWH 248 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfi----D~-~~~~~~~~~~~~~~lLkpgG~ivi-d~vl~~ 248 (294)
.+-|+||+ +. ..++-..+|+.|++.|+|||.|++ ++|+..
T Consensus 235 ---------P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 235 ---------PKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred ---------CCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 23458865 33 356789999999999999987665 555554
No 250
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.00082 Score=67.21 Aligned_cols=116 Identities=22% Similarity=0.220 Sum_probs=96.2
Q ss_pred HHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEE
Q 022597 111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 190 (294)
Q Consensus 111 L~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~ 190 (294)
...+.+..++-+|||.=++| |.-++..+..++.-..|++-|.+++.++..+++++.++.++.|+.
T Consensus 101 ~~~~~~~~~~l~vLealsAt---------------GlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~ 165 (525)
T KOG1253|consen 101 AALLKREEKSLRVLEALSAT---------------GLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEP 165 (525)
T ss_pred cchhhhccCcchHHHHhhhh---------------hHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhccc
Confidence 44555666778999999999 999999999998778999999999999999999999999999999
Q ss_pred EEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 191 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.++|+....-.. ......||+|=+|+.- .-..|++.+.+.++.||++.+.-
T Consensus 166 ~~~DA~~lM~~~--~~~~~~FDvIDLDPyG-s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 166 HHSDANVLMYEH--PMVAKFFDVIDLDPYG-SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ccchHHHHHHhc--cccccccceEecCCCC-CccHHHHHHHHHhhcCCEEEEEe
Confidence 999997654222 1114789999999853 34688999999999999999853
No 251
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.91 E-value=0.026 Score=57.00 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=98.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHH
Q 022597 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVA 175 (294)
Q Consensus 99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A 175 (294)
...-.++.+.++|..++.....++|.|--||+ |..-+..+..+.. ...++|.|.++.....|
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGs---------------gg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~ 230 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGS---------------GGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLA 230 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCch---------------hHHHHHHHHHHHhhccceeEEEEeCCHHHHHHH
Confidence 45557788899999999876677999999999 7666665655532 36799999999999999
Q ss_pred HHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHH
Q 022597 176 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYF 227 (294)
Q Consensus 176 ~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~ 227 (294)
+-++--.|+...+.+.++|......... ....++||+|+.+++- ..+..++
T Consensus 231 ~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~ 309 (489)
T COG0286 231 KMNLILHGIEGDANIRHGDTLSNPKHDD-KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFL 309 (489)
T ss_pred HHHHHHhCCCccccccccccccCCcccc-cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHH
Confidence 9999988887556777777654322210 1124679998765431 1136788
Q ss_pred HHHHhcccCCe---EEEEecccCCCc
Q 022597 228 ELLLQLIRVGG---IIVIDNVLWHGK 250 (294)
Q Consensus 228 ~~~~~lLkpgG---~ivid~vl~~g~ 250 (294)
+.+...|+||| +++.+++++.|.
T Consensus 310 ~h~~~~l~~~g~aaivl~~gvlfr~~ 335 (489)
T COG0286 310 QHILYKLKPGGRAAIVLPDGVLFRGG 335 (489)
T ss_pred HHHHHhcCCCceEEEEecCCcCcCCC
Confidence 88899999865 666677777764
No 252
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.81 E-value=0.0036 Score=56.11 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=71.2
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
...+++|||+|+|+ |..+++-+++. ...|++.|++|-....++-|.+.+|++ +.+.+.|..
T Consensus 77 tVrgkrVLd~gags---------------gLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~ 137 (218)
T COG3897 77 TVRGKRVLDLGAGS---------------GLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLI 137 (218)
T ss_pred ccccceeeeccccc---------------ChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccce--eEEeecccc
Confidence 45678999999999 98888877764 478999999999999999999999974 888887765
Q ss_pred hhHHHHhhcCCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEEE
Q 022597 197 DSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~---~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
. +...||+++..- ++......+. +...|+..|..|+
T Consensus 138 g---------~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 138 G---------SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred C---------CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 3 167899997632 2444445555 4455555555544
No 253
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.80 E-value=0.002 Score=62.75 Aligned_cols=106 Identities=15% Similarity=0.228 Sum_probs=82.9
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
..++..++++|||. |.....++.-- .+.+++++.++..+..+.......+++++-.++.++..
T Consensus 108 ~~~~~~~~~~~~g~---------------~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~ 170 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGV---------------GGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFG 170 (364)
T ss_pred CcccccccccCcCc---------------CchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhh
Confidence 34455799999999 88888888754 57899999999999999999998899887777666654
Q ss_pred hhHHHHhhcCCCCceeEE-EEcCC--ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 197 DSLKALILNGEASSYDFA-FVDAE--KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~v-fiD~~--~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.... ++..||.+ ++|.. .+.-...++.+.+.++|||+.+.-..
T Consensus 171 ~~~f------edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 171 KMPF------EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred cCCC------CccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 4322 26789998 45554 45667888889999999999998554
No 254
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.76 E-value=0.012 Score=56.51 Aligned_cols=103 Identities=20% Similarity=0.258 Sum_probs=72.7
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-chhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-da~~ 197 (294)
++.+|+-+|+|.+ |..++.+++..+ ..+|+.+|.+++.++.|++.... +.+..... +...
T Consensus 168 ~~~~V~V~GaGpI--------------GLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~ 228 (350)
T COG1063 168 PGGTVVVVGAGPI--------------GLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGA 228 (350)
T ss_pred CCCEEEEECCCHH--------------HHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHH
Confidence 3448999999987 888888888775 68899999999999998875431 11222222 2222
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
....+ .....+|.+|.-.+ ....++.+.+++++||.+++-.+.
T Consensus 229 ~~~~~---t~g~g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 229 EILEL---TGGRGADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHH---hCCCCCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence 22222 11246999998876 456788999999999999986664
No 255
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.014 Score=53.62 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=71.1
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cchh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAA 196 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gda~ 196 (294)
.+++.|||||+.| |..|-.+.+.- ..+|+++|....++.. .+ ..+.||..+. .|++
T Consensus 78 ~k~kv~LDiGsST---------------GGFTd~lLq~g--Ak~VyavDVG~~Ql~~---kL---R~d~rV~~~E~tN~r 134 (245)
T COG1189 78 VKGKVVLDIGSST---------------GGFTDVLLQRG--AKHVYAVDVGYGQLHW---KL---RNDPRVIVLERTNVR 134 (245)
T ss_pred CCCCEEEEecCCC---------------ccHHHHHHHcC--CcEEEEEEccCCccCH---hH---hcCCcEEEEecCChh
Confidence 3567999999999 88888888753 4799999998876532 11 2345666655 4555
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
...+.-. .+..|++++|..--.....+..+..+++|+|.++.
T Consensus 135 ~l~~~~~----~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 135 YLTPEDF----TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred hCCHHHc----ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 4433322 45889999998766777888899999999988775
No 256
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.018 Score=51.93 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=77.7
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
.+.++.+||=+|..+ |...-.++...+ .|.++++|.+++..+-.-...++ ..++--+.+||
T Consensus 73 pi~~g~~VLYLGAas---------------GTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA 133 (231)
T COG1889 73 PIKEGSKVLYLGAAS---------------GTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDA 133 (231)
T ss_pred CcCCCCEEEEeeccC---------------CCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeeccc
Confidence 355677999999999 998889999887 89999999999887554444443 56788889998
Q ss_pred hhhH--HHHhhcCCCCceeEEEEcCCccchHHH-HHHHHhcccCCeEEEE
Q 022597 196 ADSL--KALILNGEASSYDFAFVDAEKRMYQEY-FELLLQLIRVGGIIVI 242 (294)
Q Consensus 196 ~~~l--~~l~~~~~~~~fD~vfiD~~~~~~~~~-~~~~~~lLkpgG~ivi 242 (294)
..-- ..+ -+..|+||.|...++..+. ...+...|++||.+++
T Consensus 134 ~~P~~Y~~~-----Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 134 RKPEKYRHL-----VEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred CCcHHhhhh-----cccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 6422 222 3679999999886665544 4555779999996665
No 257
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.70 E-value=0.0034 Score=62.75 Aligned_cols=113 Identities=21% Similarity=0.236 Sum_probs=83.5
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
.+|-+|-|. |.....+-..+| ..+++++|++|++++.|++++....-. +.+++..|..+.+.+
T Consensus 298 ~~lvvg~gg---------------G~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~ 360 (482)
T KOG2352|consen 298 KQLVVGLGG---------------GGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQR 360 (482)
T ss_pred cEEEEecCC---------------CccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHH
Confidence 566666666 777777666665 689999999999999999998764332 567777788888877
Q ss_pred HhhcC-CCCceeEEEEcCCccc------------hHHHHHHHHhcccCCeEEEEecccCCCcc
Q 022597 202 LILNG-EASSYDFAFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDNVLWHGKV 251 (294)
Q Consensus 202 l~~~~-~~~~fD~vfiD~~~~~------------~~~~~~~~~~lLkpgG~ivid~vl~~g~v 251 (294)
..... +...||++++|.+-.+ .+.++..+...|.|.|+++++-+..+..+
T Consensus 361 ~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~ 423 (482)
T KOG2352|consen 361 TAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSF 423 (482)
T ss_pred HhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcch
Confidence 65532 4578999999865211 34566667789999999999877655443
No 258
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.58 E-value=0.004 Score=57.14 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=49.7
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C------CCcEEEEEc
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V------SHKVKIKHG 193 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l------~~~v~~~~g 193 (294)
+|||.-+|. |.-++-++.. +++|+++|.||-.....+.-++++. . ..+++++++
T Consensus 78 ~VLDaTaGL---------------G~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 78 SVLDATAGL---------------GRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp -EEETT-TT---------------SHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred EEEECCCcc---------------hHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 899999999 9999888864 5899999999988777665555431 1 148999999
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
|+.+.++.. ..+||+|+.|+-
T Consensus 140 d~~~~L~~~-----~~s~DVVY~DPM 160 (234)
T PF04445_consen 140 DALEYLRQP-----DNSFDVVYFDPM 160 (234)
T ss_dssp -CCCHCCCH-----SS--SEEEE--S
T ss_pred CHHHHHhhc-----CCCCCEEEECCC
Confidence 999987621 689999999973
No 259
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.46 E-value=0.019 Score=53.12 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=96.0
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
.+.++.+||=+|+++ |.+.-.+.....+++.|+++|.++..-+..-...+ -..+|--+..|+
T Consensus 153 hikpGsKVLYLGAas---------------GttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk---kRtNiiPIiEDA 214 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAAS---------------GTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK---KRTNIIPIIEDA 214 (317)
T ss_pred eecCCceEEEeeccC---------------CceeehhhcccCCCceEEEEEecccchHHHHHHhh---ccCCceeeeccC
Confidence 456777999999999 98888888888889999999999876544333333 344677777788
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHH-HHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhh-
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFEL-LLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME- 273 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~-~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~- 273 (294)
+.--+.-. .-+-.|.||.|...++....+.+ +.-.|++||-+++.-= -...|. ...+++....|.++.-.+
T Consensus 215 rhP~KYRm---lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisik---ancids-tv~ae~vFa~Ev~klqee~ 287 (317)
T KOG1596|consen 215 RHPAKYRM---LVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIK---ANCIDS-TVFAEAVFAAEVKKLQEEQ 287 (317)
T ss_pred CCchheee---eeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEe---cccccc-cccHHHHHHHHHHHHHHhc
Confidence 65322110 13578999999987766555443 3468999998887411 111111 122333333444332222
Q ss_pred -CCCeEEEEeecCCceEEE
Q 022597 274 -DERVSISMVPIGDGMTIC 291 (294)
Q Consensus 274 -~~~~~~~~lp~gdGl~i~ 291 (294)
.|.-+.++-|.-.+-.++
T Consensus 288 lkP~EqvtLEP~erdha~V 306 (317)
T KOG1596|consen 288 LKPKEQVTLEPFERDHACV 306 (317)
T ss_pred cCchheeccccccCCceEE
Confidence 455677888886665544
No 260
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.45 E-value=0.018 Score=53.84 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=70.0
Q ss_pred HHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597 113 MLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 192 (294)
Q Consensus 113 ~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~ 192 (294)
.++...+-...||||||- |-+| .+-.+++...++++|+-+|.+|-.+..++..+....- .+..+++
T Consensus 62 ~la~~~GIrQFLDlGsGl------------PT~~-nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~ 127 (267)
T PF04672_consen 62 YLAEEAGIRQFLDLGSGL------------PTAG-NVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQ 127 (267)
T ss_dssp HHHCTT---EEEEET--S--------------SS--HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE
T ss_pred HHHHhcCcceEEEcccCC------------CCCC-CHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEe
Confidence 333334667999999985 2223 4566777777799999999999999999998876532 3589999
Q ss_pred cchhhhHHHHhhcCCCCcee------EEEEc-----CCccchHHHHHHHHhcccCCeEEEEecccC
Q 022597 193 GLAADSLKALILNGEASSYD------FAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 193 gda~~~l~~l~~~~~~~~fD------~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
+|..+--.-+....-.+-+| ++++. .+..+....+..+...|.||.++++.....
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 99876422221000012333 33332 123567889999999999999999987743
No 261
>PHA01634 hypothetical protein
Probab=96.40 E-value=0.0091 Score=50.27 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=57.9
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
..++|+|||.+. |.|+++++..- ..+|+++|.++...+..+++.+.+.+-++..... . +
T Consensus 28 k~KtV~dIGA~i---------------GdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-e---W 86 (156)
T PHA01634 28 YQRTIQIVGADC---------------GSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-E---W 86 (156)
T ss_pred cCCEEEEecCCc---------------cchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc-c---c
Confidence 566999999999 99999999763 4789999999999999999998876655444332 1 1
Q ss_pred HHHHhhcCCCCceeEEEEcCC
Q 022597 199 LKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~ 219 (294)
+ +.-++||...+|..
T Consensus 87 -~-----~~Y~~~Di~~iDCe 101 (156)
T PHA01634 87 -N-----GEYEDVDIFVMDCE 101 (156)
T ss_pred -c-----ccCCCcceEEEEcc
Confidence 1 12589999999975
No 262
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.38 E-value=0.023 Score=54.90 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=71.3
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...++++|+=+|+| |- |..++.+|+++. ++|+++|.+++..+.|++. |-+ .++....
T Consensus 163 ~~~pG~~V~I~G~G-Gl-------------Gh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GAd---~~i~~~~ 219 (339)
T COG1064 163 NVKPGKWVAVVGAG-GL-------------GHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GAD---HVINSSD 219 (339)
T ss_pred CCCCCCEEEEECCc-HH-------------HHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CCc---EEEEcCC
Confidence 44567799999988 33 889999999884 9999999999988877664 332 2333222
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.+..+.+ .+.+|+|+.-.+ ...++...+.|++||.+++-.+.
T Consensus 220 ~~~~~~~-----~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 220 SDALEAV-----KEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred chhhHHh-----HhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 3444444 234999987775 45567778899999999986553
No 263
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.028 Score=54.62 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=101.5
Q ss_pred ccCCChhHHHHHHhc----CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH-HhhhCCCeEEEEccccccccccccc
Q 022597 65 VISVTPPLYDYILRN----VREPEILRQLREETAGMRGSQMQVSPDQAQLLAML-VQILGAQRCIEVGVYTVCVSSYSTS 139 (294)
Q Consensus 65 ~~~l~~~l~~Y~~~~----~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l-~~~~~~~~vLEiG~g~~~~~~~~~~ 139 (294)
.+.-.|+-+.|.... .+..+.|.++........+.......+.+.++--+ ....++.+|||.++..
T Consensus 96 ~~p~~p~~~a~~~~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAP--------- 166 (375)
T KOG2198|consen 96 ELPWYPDNLAFEKDVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAP--------- 166 (375)
T ss_pred cCCCCcccchhhhcCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCC---------
Confidence 333344444555543 23345555666554433332222333444444333 4667888999999999
Q ss_pred cccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHh-hcC--CCCceeE
Q 022597 140 ILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LNG--EASSYDF 213 (294)
Q Consensus 140 ~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~-~~~--~~~~fD~ 213 (294)
|.-++.+.+++.. .+.|++=|.++..+...+...++..- ..+.+...++...-.... ..+ +...||.
T Consensus 167 ------G~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDr 239 (375)
T KOG2198|consen 167 ------GGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGNDKEQLKFDR 239 (375)
T ss_pred ------CccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCchhhhhhcce
Confidence 9999998888742 46899999999998888887766543 234444444432211100 000 2468999
Q ss_pred EEEcCCc--------------c------------chHHHHHHHHhcccCCeEEEEeccc
Q 022597 214 AFVDAEK--------------R------------MYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 214 vfiD~~~--------------~------------~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
|++|++- + -...++...+++|++||.+|....-
T Consensus 240 VLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 240 VLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred eEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 9999751 0 0235566667899999999998773
No 264
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.24 E-value=0.034 Score=53.39 Aligned_cols=121 Identities=20% Similarity=0.253 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHH---------HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH
Q 022597 103 VSPDQAQLLAML---------VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE 173 (294)
Q Consensus 103 v~~~~~~lL~~l---------~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~ 173 (294)
++-+.|.++.-| .....+.+||-+|+|.+ |..++..|++++ ..+|+.+|++++.++
T Consensus 144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPI--------------Gl~t~l~Aka~G-A~~VVi~d~~~~Rle 208 (354)
T KOG0024|consen 144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPI--------------GLLTGLVAKAMG-ASDVVITDLVANRLE 208 (354)
T ss_pred CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHH--------------HHHHHHHHHHcC-CCcEEEeecCHHHHH
Confidence 444555555444 23456679999999987 999999999986 789999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcC-CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 174 VAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 174 ~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~-~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.|++ .|...-...-+.+..+.+.+..++. ....+|+.|--.+. ..-++.....++.||.+++-..
T Consensus 209 ~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~---~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 209 LAKK----FGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGA---EVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred HHHH----hCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCc---hHHHHHHHHHhccCCEEEEecc
Confidence 9987 3443211222222223333333332 23569999876543 4556677889999999877543
No 265
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.027 Score=49.37 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=70.4
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC--CcEEEEEcc
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGL 194 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~--~~v~~~~gd 194 (294)
...+++|+|+|.|. .|..++.+|...+ ...|...|-|++.++-.++....+-.+ .++.+..-+
T Consensus 27 ~~rg~~ilelgggf--------------t~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~ 91 (201)
T KOG3201|consen 27 KIRGRRILELGGGF--------------TGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL 91 (201)
T ss_pred HHhHHHHHHhcCch--------------hhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH
Confidence 44557999999973 1777788887665 678999999999998888877655222 122222111
Q ss_pred hhhhHHHHhhcCCCCceeEEEE-cCC--ccchHHHHHHHHhcccCCeEEEEe
Q 022597 195 AADSLKALILNGEASSYDFAFV-DAE--KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfi-D~~--~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.... .. ..+...||+|.. |.- ++....+.+.+..+|+|.|..++.
T Consensus 92 ~~~a--qs--q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 92 IWGA--QS--QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred Hhhh--HH--HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 1110 00 011468999975 322 555677788889999999986654
No 266
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.03 E-value=0.019 Score=52.00 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=75.5
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC------CCCcEEEEEcch
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------VSHKVKIKHGLA 195 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g------l~~~v~~~~gda 195 (294)
.+.|||||. |...+.++-..| +.-+.|.|+--+..+..++.++..+ .-.++.+...++
T Consensus 63 efaDIGCGy---------------GGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na 126 (249)
T KOG3115|consen 63 EFADIGCGY---------------GGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA 126 (249)
T ss_pred eEEeeccCc---------------cchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc
Confidence 589999988 777777777776 7789999999999999999988765 224688889999
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCC-cc-------chHHHHHHHHhcccCCeEEEE
Q 022597 196 ADSLKALILNGEASSYDFAFVDAE-KR-------MYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~-~~-------~~~~~~~~~~~lLkpgG~ivi 242 (294)
...++.+...|+-.+-=+.|-|+- +. -...++....-+|++||.++.
T Consensus 127 mk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 127 MKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred hhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 888887765543333223344432 11 134566667778999998874
No 267
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.98 E-value=0.025 Score=52.42 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhh-CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597 106 DQAQLLAMLVQIL-GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 184 (294)
Q Consensus 106 ~~~~lL~~l~~~~-~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl 184 (294)
..-.+...+.... .+.+|+|||||. =-.++-+.. .+++..++++|+|...++.....+...|.
T Consensus 91 ~Ld~fY~~if~~~~~p~sVlDigCGl---------------NPlalp~~~-~~~~a~Y~a~DID~~~ve~l~~~l~~l~~ 154 (251)
T PF07091_consen 91 NLDEFYDEIFGRIPPPDSVLDIGCGL---------------NPLALPWMP-EAPGATYIAYDIDSQLVEFLNAFLAVLGV 154 (251)
T ss_dssp GHHHHHHHHCCCS---SEEEEET-TT---------------CHHHHHTTT-SSTT-EEEEEESBHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHhcCCCCchhhhhhccC---------------Cceehhhcc-cCCCcEEEEEeCCHHHHHHHHHHHHhhCC
Confidence 3444444444433 378999999965 333333232 33468999999999999999999999887
Q ss_pred CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc
Q 022597 185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVD 217 (294)
Q Consensus 185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD 217 (294)
.. ++...|.....+ ....|+.++=
T Consensus 155 ~~--~~~v~Dl~~~~~-------~~~~DlaLll 178 (251)
T PF07091_consen 155 PH--DARVRDLLSDPP-------KEPADLALLL 178 (251)
T ss_dssp CE--EEEEE-TTTSHT-------TSEESEEEEE
T ss_pred Cc--ceeEeeeeccCC-------CCCcchhhHH
Confidence 65 444445543221 5779998763
No 268
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.89 E-value=0.0098 Score=55.33 Aligned_cols=110 Identities=14% Similarity=0.179 Sum_probs=65.1
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC------------
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH------------ 186 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~------------ 186 (294)
++.++||||||. .-..+..+.+.-.+|+..|..+...+..++.++..|--+
T Consensus 56 ~g~~llDiGsGP-----------------tiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lE 118 (256)
T PF01234_consen 56 KGETLLDIGSGP-----------------TIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELE 118 (256)
T ss_dssp -EEEEEEES-TT-------------------GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHT
T ss_pred CCCEEEEeCCCc-----------------HHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhcc
Confidence 455899999975 222222333323579999999999998888887643211
Q ss_pred ---------------cEE-EEEcchhhhHHHHhh-cCCCCceeEEEEc-------CCccchHHHHHHHHhcccCCeEEEE
Q 022597 187 ---------------KVK-IKHGLAADSLKALIL-NGEASSYDFAFVD-------AEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 187 ---------------~v~-~~~gda~~~l~~l~~-~~~~~~fD~vfiD-------~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.|+ ++..|....-+ +.. .....+||.|+.- .+...|...+..+..+|||||.+++
T Consensus 119 g~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~p-l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 119 GKREKWEEKEEKLRRAVKQVVPCDVTQPNP-LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp TSSSGHHHHHHHHHHHEEEEEE--TTSSST-TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCcchhhhHHHHHHHhhceEEEeeccCCCC-CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 111 33333322100 000 0002359998753 2356789999999999999999999
Q ss_pred eccc
Q 022597 243 DNVL 246 (294)
Q Consensus 243 d~vl 246 (294)
-.++
T Consensus 198 ~~~l 201 (256)
T PF01234_consen 198 AGVL 201 (256)
T ss_dssp EEES
T ss_pred EEEc
Confidence 8776
No 269
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.83 E-value=0.023 Score=53.02 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=54.4
Q ss_pred cccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 140 ILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 140 ~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
++|||||.+++.+......-..+.++|+++..++..+.++.. .++.+|..+....-. ...+|+++.+++
T Consensus 3 v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~----~~~~D~l~~gpP 71 (275)
T cd00315 3 VIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF----IPDIDLLTGGFP 71 (275)
T ss_pred EEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc----CCCCCEEEeCCC
Confidence 344444444444333322134678999999999888777642 155677766543210 256999998764
Q ss_pred c------------cc-----hHHHHHHHHhcccCCeEEEEecc
Q 022597 220 K------------RM-----YQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 220 ~------------~~-----~~~~~~~~~~lLkpgG~ivid~v 245 (294)
- .+ +.++++. .+.++|. ++++.||
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~-i~~~~P~-~~v~ENV 112 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRI-LKEKKPK-YFLLENV 112 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHH-HHhcCCC-EEEEEcC
Confidence 1 01 2333333 3445676 7888998
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.83 E-value=0.0072 Score=60.80 Aligned_cols=98 Identities=10% Similarity=0.109 Sum_probs=52.5
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 200 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~ 200 (294)
+.+||||||+ |..+..|... +....++..+...- ...+.+-+.|+..-+-+. ...-++
T Consensus 119 R~~LDvGcG~---------------aSF~a~l~~r---~V~t~s~a~~d~~~-~qvqfaleRGvpa~~~~~---~s~rLP 176 (506)
T PF03141_consen 119 RTALDVGCGV---------------ASFGAYLLER---NVTTMSFAPNDEHE-AQVQFALERGVPAMIGVL---GSQRLP 176 (506)
T ss_pred EEEEecccee---------------ehhHHHHhhC---CceEEEcccccCCc-hhhhhhhhcCcchhhhhh---cccccc
Confidence 4789999999 8888877764 33333333332221 111222233443222111 111122
Q ss_pred HHhhcCCCCceeEEEEc----CCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 201 ALILNGEASSYDFAFVD----AEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 201 ~l~~~~~~~~fD~vfiD----~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+.+.||+|-.. .+...-.-++-.+-++|||||+++...-
T Consensus 177 -----fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 177 -----FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred -----CCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 136889999532 2222223356667899999999987643
No 271
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.0073 Score=58.57 Aligned_cols=109 Identities=21% Similarity=0.234 Sum_probs=71.3
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..++++||+|.|. |.+..+.-...|+-..++-+|.|+..-++.....+..+.+ +.....+|...
T Consensus 112 fapqsiLDvG~GP---------------gtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-~td~r~s~vt~ 175 (484)
T COG5459 112 FAPQSILDVGAGP---------------GTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-KTDWRASDVTE 175 (484)
T ss_pred cCcchhhccCCCC---------------chhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-cCCCCCCccch
Confidence 3567899999999 8888887777786677888999997666655544443322 23333333322
Q ss_pred hHHHHhhcCCCCceeEEEEcC------CccchHHHHHHHHhcccCCeEEEEecc
Q 022597 198 SLKALILNGEASSYDFAFVDA------EKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~------~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
- ...-+..+.|+++++-. .....+.+++.++.++.|||.+|+-.-
T Consensus 176 d---Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 176 D---RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred h---ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 1 11112257888887532 223355689999999999999997543
No 272
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.79 E-value=0.025 Score=54.79 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=62.0
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++++|||+||++ |..|..+.+. +++|++||..+- + ..+. -..+|+...+|...
T Consensus 210 ~~g~~vlDLGAsP---------------GGWT~~L~~r---G~~V~AVD~g~l----~-~~L~---~~~~V~h~~~d~fr 263 (357)
T PRK11760 210 APGMRAVDLGAAP---------------GGWTYQLVRR---GMFVTAVDNGPM----A-QSLM---DTGQVEHLRADGFK 263 (357)
T ss_pred CCCCEEEEeCCCC---------------cHHHHHHHHc---CCEEEEEechhc----C-Hhhh---CCCCEEEEeccCcc
Confidence 4677999999999 8888777764 579999996542 1 1222 24579999998876
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 237 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg 237 (294)
..+. .+++|.++.|.. .......+.+.+.|..|
T Consensus 264 ~~p~------~~~vDwvVcDmv-e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 264 FRPP------RKNVDWLVCDMV-EKPARVAELMAQWLVNG 296 (357)
T ss_pred cCCC------CCCCCEEEEecc-cCHHHHHHHHHHHHhcC
Confidence 5432 468999999974 23346667777777666
No 273
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.73 E-value=0.08 Score=47.45 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=67.6
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-chhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-da~~ 197 (294)
+..+|||+|+.. |.++.-.-+...+.|.|.+||+-.- . ..+.++++.+ |..|
T Consensus 69 p~~~VlD~G~AP---------------GsWsQVavqr~~p~g~v~gVDllh~---------~---p~~Ga~~i~~~dvtd 121 (232)
T KOG4589|consen 69 PEDTVLDCGAAP---------------GSWSQVAVQRVNPNGMVLGVDLLHI---------E---PPEGATIIQGNDVTD 121 (232)
T ss_pred CCCEEEEccCCC---------------ChHHHHHHHhhCCCceEEEEeeeec---------c---CCCCcccccccccCC
Confidence 456999999999 8888877777767899999998442 1 1234666666 4443
Q ss_pred h--HHHHhhcCCCCceeEEEEcCC-------ccchHHHHHHH-------HhcccCCeEEEEecccCCCc
Q 022597 198 S--LKALILNGEASSYDFAFVDAE-------KRMYQEYFELL-------LQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 198 ~--l~~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~-------~~lLkpgG~ivid~vl~~g~ 250 (294)
. ...+.+..+..+.|.|+.|-. ..+.....+.| ..+++|+|.+++- +|.|.
T Consensus 122 p~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g~ 188 (232)
T KOG4589|consen 122 PETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDGS 188 (232)
T ss_pred HHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecCC
Confidence 2 222222224678999998843 12223333443 4678999999987 67774
No 274
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.69 E-value=0.094 Score=49.22 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=67.3
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-------------
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH------------- 186 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~------------- 186 (294)
..+||-=|||. |..+..+|.. +-.+.+.|.|--|+-..+-.+....-.+
T Consensus 57 ~~~VLVPGsGL---------------GRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 57 KIRVLVPGSGL---------------GRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred ccEEEEcCCCc---------------chHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence 35899999999 9999988886 6789999999998754443333211111
Q ss_pred --------------------------cEEEEEcchhhhHHHHhhcCCCCceeEE----EEcCCccchHHHHHHHHhcccC
Q 022597 187 --------------------------KVKIKHGLAADSLKALILNGEASSYDFA----FVDAEKRMYQEYFELLLQLIRV 236 (294)
Q Consensus 187 --------------------------~v~~~~gda~~~l~~l~~~~~~~~fD~v----fiD~~~~~~~~~~~~~~~lLkp 236 (294)
++.+..||..+.... ....++||.| |+|. .++..+|++.+..+|||
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~---~~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGP---DENKGSFDVVVTCFFIDT-AENIIEYIETIEHLLKP 194 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCC---cccCCcccEEEEEEEeec-hHHHHHHHHHHHHHhcc
Confidence 233334444333211 0013689988 6777 45678999999999999
Q ss_pred CeEEE
Q 022597 237 GGIIV 241 (294)
Q Consensus 237 gG~iv 241 (294)
||+-|
T Consensus 195 gG~WI 199 (270)
T PF07942_consen 195 GGYWI 199 (270)
T ss_pred CCEEE
Confidence 99765
No 275
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.67 E-value=0.078 Score=50.11 Aligned_cols=100 Identities=20% Similarity=0.281 Sum_probs=64.9
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+++||-+|+|.+ |..++.+++... ..+|+++|.+++..+.+++ .|...-+.....+.
T Consensus 168 ~~g~~VlV~G~G~v--------------G~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~-- 226 (343)
T PRK09880 168 LQGKRVFVSGVGPI--------------GCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDL-- 226 (343)
T ss_pred CCCCEEEEECCCHH--------------HHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccH--
Confidence 35678998999765 888888888763 2379999999998877654 45432122111122
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.++... .+.+|+||-..+. ...++.+.+.|++||.++.-..
T Consensus 227 --~~~~~~--~g~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 227 --DHYKAE--KGYFDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --HHHhcc--CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 222111 2469999866553 2456678889999999987553
No 276
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.52 E-value=0.072 Score=42.78 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=61.4
Q ss_pred cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHH
Q 022597 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE 225 (294)
Q Consensus 146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~ 225 (294)
|..++.+++..+ ++|+++|.+++..+.++ +.|.. .++..+..+..+.+........+|.||.-.+. ..
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---~~ 70 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---GD 70 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---HH
T ss_pred HHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhccc---ccccccccccccccccccccccceEEEEecCc---HH
Confidence 888899999885 99999999999876654 45533 22332222233333222223589999987763 46
Q ss_pred HHHHHHhcccCCeEEEEeccc
Q 022597 226 YFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 226 ~~~~~~~lLkpgG~ivid~vl 246 (294)
.++...++|++||.+++-.+.
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHhccCCEEEEEEcc
Confidence 788899999999999987654
No 277
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.50 E-value=0.026 Score=56.23 Aligned_cols=59 Identities=20% Similarity=0.347 Sum_probs=52.3
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.|||||+|| |..++..+++. +-.||+||.-..+.+.|++...++|.+++|+++.....+
T Consensus 69 ~vLdigtGT---------------GLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGT---------------GLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCc---------------cHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 789999999 99999888876 356999999999999999999999999999998765544
No 278
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.48 E-value=0.11 Score=49.39 Aligned_cols=95 Identities=18% Similarity=0.107 Sum_probs=62.6
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++++||-+|+|.+ |..++.+++....+.+|+++|.+++.++.+++ ++.. ... + +
T Consensus 162 ~~g~~VlV~G~G~v--------------Gl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~---~~~--~--~ 216 (341)
T cd08237 162 KDRNVIGVWGDGNL--------------GYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET---YLI--D--D 216 (341)
T ss_pred CCCCEEEEECCCHH--------------HHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce---eeh--h--h
Confidence 45779999999764 66666666653224689999999988877754 3321 111 1 1
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
... ...+|+||--.+.......++...++|++||.+++-.
T Consensus 217 ~~~-------~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 217 IPE-------DLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred hhh-------ccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 111 1248998865553334567888899999999998754
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.41 E-value=0.14 Score=52.05 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=70.3
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-----
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH----- 192 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~----- 192 (294)
.++.+|+-+|+|.+ |..++..++.++ +.|+++|.+++.++.+++ .|-.. +.+-.
T Consensus 163 ~pg~kVlViGaG~i--------------GL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~-v~i~~~e~~~ 221 (509)
T PRK09424 163 VPPAKVLVIGAGVA--------------GLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEF-LELDFEEEGG 221 (509)
T ss_pred cCCCEEEEECCcHH--------------HHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeE-EEeccccccc
Confidence 46789999999985 888888898875 689999999999887766 34321 11111
Q ss_pred ----------cchhhhHHHHhhcCCCCceeEEEEcCCccc--hHHH-HHHHHhcccCCeEEEEecccCCC
Q 022597 193 ----------GLAADSLKALILNGEASSYDFAFVDAEKRM--YQEY-FELLLQLIRVGGIIVIDNVLWHG 249 (294)
Q Consensus 193 ----------gda~~~l~~l~~~~~~~~fD~vfiD~~~~~--~~~~-~~~~~~lLkpgG~ivid~vl~~g 249 (294)
.+..+....+..+ ....+|+||.-+..+. .+.. .+.+.+.+||||+|+.=.+-..|
T Consensus 222 ~~~gya~~~s~~~~~~~~~~~~~-~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG 290 (509)
T PRK09424 222 SGDGYAKVMSEEFIKAEMALFAE-QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG 290 (509)
T ss_pred cccchhhhcchhHHHHHHHHHHh-ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence 0111111111110 0146999998765322 2344 48899999999998865443334
No 280
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.34 Score=45.24 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=77.3
Q ss_pred HHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHHHHhCCCCcEE
Q 022597 113 MLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVK 189 (294)
Q Consensus 113 ~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~ 189 (294)
.++.+.++...+|+|+|+ -.-+..+..++.+ -.+.+.+|+++..++...+.+.+--..=.+.
T Consensus 72 Eia~~~g~~~lveLGsGn---------------s~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~ 136 (321)
T COG4301 72 EIASITGACTLVELGSGN---------------STKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVN 136 (321)
T ss_pred HHHHhhCcceEEEecCCc---------------cHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEe
Confidence 356677888999999988 6666777777653 2589999999998865444444322222366
Q ss_pred EEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 022597 190 IKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
-+.+|+...+..+. + .+.==++|+... +.....|+..+...|+||-++++-
T Consensus 137 ~l~~~~~~~La~~~-~--~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 137 ALCGDYELALAELP-R--GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred ehhhhHHHHHhccc-C--CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 67788776665552 1 233334555432 556788999999999999998874
No 281
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.34 E-value=0.039 Score=51.66 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597 108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 187 (294)
Q Consensus 108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~ 187 (294)
-.++.++-..-+...|-|+|||- + .||.. ..-.|++.|+-+- .
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGE---------------a----kiA~~--~~~kV~SfDL~a~--------------~-- 211 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGE---------------A----KIASS--ERHKVHSFDLVAV--------------N-- 211 (325)
T ss_pred HHHHHHHHhCcCceEEEecccch---------------h----hhhhc--cccceeeeeeecC--------------C--
Confidence 35666666666667899999987 4 33432 2367899998542 2
Q ss_pred EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecc
Q 022597 188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
-+++.+|..++.- ++++.|+++.... ..++..++..+.+.|++||.+.+..|
T Consensus 212 ~~V~~cDm~~vPl------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 212 ERVIACDMRNVPL------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred CceeeccccCCcC------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEeh
Confidence 3455667766321 2689999865432 46788999999999999999999888
No 282
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.21 E-value=0.019 Score=54.58 Aligned_cols=98 Identities=18% Similarity=0.293 Sum_probs=64.1
Q ss_pred ccccCCC--cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEE
Q 022597 139 SILSLFS--GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 216 (294)
Q Consensus 139 ~~~~~~a--G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfi 216 (294)
-|+|||| ||.++-+.-.. ....|++||.||..++..+++++.+++.++..++.||-+..-+ ....|.|.+
T Consensus 197 viVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~AdrVnL 268 (351)
T KOG1227|consen 197 VIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLRADRVNL 268 (351)
T ss_pred hhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------cccchheee
Confidence 3445555 56666333222 2578999999999999999999999999888888888865432 467888876
Q ss_pred cCCccchHHHHHHHHhcccCC-e-EEEEecc
Q 022597 217 DAEKRMYQEYFELLLQLIRVG-G-IIVIDNV 245 (294)
Q Consensus 217 D~~~~~~~~~~~~~~~lLkpg-G-~ivid~v 245 (294)
..-+.. .+-+..+.+.|+|. | ++=+|..
T Consensus 269 GLlPSs-e~~W~~A~k~Lk~eggsilHIHen 298 (351)
T KOG1227|consen 269 GLLPSS-EQGWPTAIKALKPEGGSILHIHEN 298 (351)
T ss_pred cccccc-ccchHHHHHHhhhcCCcEEEEecc
Confidence 543221 12223355666664 4 5555544
No 283
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=95.14 E-value=0.19 Score=46.59 Aligned_cols=90 Identities=27% Similarity=0.420 Sum_probs=55.3
Q ss_pred cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccc
Q 022597 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRM 222 (294)
Q Consensus 146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~ 222 (294)
|.-.+. +..+++.-+++.+|++++-.+..+++++. ..++++++.|..+.+..+... ..+=-+|++|++ +.+
T Consensus 67 GSP~ia-~~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allPP--~~rRglVLIDPpYE~~~d 140 (245)
T PF04378_consen 67 GSPAIA-ARLLREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLPP--PERRGLVLIDPPYEQKDD 140 (245)
T ss_dssp -HHHHH-HHHS-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S---TTS-EEEEE-----STTH
T ss_pred CCHHHH-HHhCCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCCC--CCCCeEEEECCCCCCchH
Confidence 644443 34456678999999999999988888774 458999999999988877532 345679999986 667
Q ss_pred hHHHHHHHHhccc--CCeEEE
Q 022597 223 YQEYFELLLQLIR--VGGIIV 241 (294)
Q Consensus 223 ~~~~~~~~~~lLk--pgG~iv 241 (294)
|....+.+...++ +.|+++
T Consensus 141 y~~v~~~l~~a~kR~~~G~~~ 161 (245)
T PF04378_consen 141 YQRVVDALAKALKRWPTGVYA 161 (245)
T ss_dssp HHHHHHHHHHHHHH-TTSEEE
T ss_pred HHHHHHHHHHHHHhcCCcEEE
Confidence 8887777766555 456554
No 284
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.06 E-value=0.054 Score=50.11 Aligned_cols=92 Identities=17% Similarity=0.317 Sum_probs=55.8
Q ss_pred cccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 140 ILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 140 ~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
++|||||.+++.++.....--.+.++|+++...+.-+.|+. .+..+|..+.-..-. .+.+|+++..++
T Consensus 3 ~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l----~~~~D~l~ggpP 70 (335)
T PF00145_consen 3 VIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL----PKDVDLLIGGPP 70 (335)
T ss_dssp EEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH----HHT-SEEEEE--
T ss_pred EEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc----cccceEEEeccC
Confidence 45566666666655544312467899999998888777774 677889887654422 115999986543
Q ss_pred ---------------cc--chHHHHHHHHhcccCCeEEEEecc
Q 022597 220 ---------------KR--MYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 220 ---------------~~--~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+ -+.++++.+ ..++|. ++++.||
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk-~~~~ENV 111 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPK-YFLLENV 111 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-S-EEEEEEE
T ss_pred CceEeccccccccccccchhhHHHHHHH-hhccce-EEEeccc
Confidence 01 134444443 456785 6778999
No 285
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=94.97 E-value=0.034 Score=51.30 Aligned_cols=97 Identities=8% Similarity=0.081 Sum_probs=69.8
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 200 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~ 200 (294)
..++||||+- |+....+.... -.+++-+|.+..+++.++..-. .++ .+....+|- +.++
T Consensus 74 p~a~diGcs~---------------G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DE-E~Ld 132 (325)
T KOG2940|consen 74 PTAFDIGCSL---------------GAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDE-EFLD 132 (325)
T ss_pred cceeecccch---------------hhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cce--EEEEEecch-hccc
Confidence 4799999999 88777665432 3689999999999988765322 222 244455554 3443
Q ss_pred HHhhcCCCCceeEEEEc---CCccchHHHHHHHHhcccCCeEEEEe
Q 022597 201 ALILNGEASSYDFAFVD---AEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 201 ~l~~~~~~~~fD~vfiD---~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+ .++++|+|+.. +|..+.+..+..|...|||+|.++..
T Consensus 133 -f----~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 133 -F----KENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred -c----cccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 2 26899999865 45667888899999999999998753
No 286
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.84 E-value=0.028 Score=49.08 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=32.3
Q ss_pred HHHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597 108 AQLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK 177 (294)
Q Consensus 108 ~~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~ 177 (294)
.+++..++... ++..|||--+|+ |..+.+..+ + +-+.+++|++++.+++|++
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GS---------------GTT~~aa~~-l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGS---------------GTTAVAAEE-L--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TT---------------THHHHHHHH-T--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhcc---------------ChHHHHHHH-c--CCeEEEEeCCHHHHHHhcC
Confidence 34566666544 345677766665 544443333 3 4579999999999999875
No 287
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.82 E-value=0.23 Score=47.48 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=64.7
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
.+..+++||=.|+|.+ |..+..+++.. +. +|+++|.+++..+.+++ .|...-+.....+
T Consensus 188 ~i~~g~~VlV~G~G~v--------------G~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~ 247 (371)
T cd08281 188 GVRPGQSVAVVGLGGV--------------GLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPN 247 (371)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchh
Confidence 3455678888998754 77777777765 45 69999999998877654 4543222222222
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
..+.+..+ . .+.+|+||--.+. ...++.+.+.|++||.++.-.
T Consensus 248 ~~~~i~~~---~-~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 248 AVEQVREL---T-GGGVDYAFEMAGS---VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred HHHHHHHH---h-CCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEc
Confidence 22223322 1 2368988865432 345677788999999988644
No 288
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.69 E-value=0.081 Score=50.59 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=59.9
Q ss_pred ccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCC-ceeEEEEc
Q 022597 139 SILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDFAFVD 217 (294)
Q Consensus 139 ~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~-~fD~vfiD 217 (294)
.++|||||.+++.+......--.+.++|+++..++.-+.++.. ..++.+|..+....-. .. .+|+++-.
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----~~~~~DvligG 74 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----RKSDVDVLIGG 74 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----cccCCCEEEeC
Confidence 4667777777777665543224678999999998877777653 4566677765543221 12 78988654
Q ss_pred CC--------cc-------c--hHHHHHHHHhcccCCeEEEEecc
Q 022597 218 AE--------KR-------M--YQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 218 ~~--------~~-------~--~~~~~~~~~~lLkpgG~ivid~v 245 (294)
++ ++ . +.++. .+...++| -++|+.||
T Consensus 75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~-r~I~~~~P-~~fv~ENV 117 (328)
T COG0270 75 PPCQDFSIAGKRRGYDDPRGSLFLEFI-RLIEQLRP-KFFVLENV 117 (328)
T ss_pred CCCcchhhcCcccCCcCccceeeHHHH-HHHHhhCC-CEEEEecC
Confidence 33 11 1 23333 34466777 88999999
No 289
>PRK11524 putative methyltransferase; Provisional
Probab=94.68 E-value=0.036 Score=51.83 Aligned_cols=56 Identities=5% Similarity=-0.000 Sum_probs=39.4
Q ss_pred HHHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 108 AQLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 108 ~~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
..|+..++... .+..|||--+|+ |..+++..+ + +-+.+|+|++++.++.|+++++.
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GS---------------GTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGS---------------FTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCC---------------cHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 35666666554 456777776666 644444333 3 46899999999999999999864
No 290
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.64 E-value=0.33 Score=44.83 Aligned_cols=100 Identities=21% Similarity=0.300 Sum_probs=62.6
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
...+.+||..|+|.+ |..++.+++.. +.+|++++.+++..+.+++ .|....+.....+..
T Consensus 163 ~~~~~~vli~g~g~v--------------G~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~ 222 (338)
T cd08254 163 VKPGETVLVIGLGGL--------------GLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPK 222 (338)
T ss_pred CCCCCEEEEECCcHH--------------HHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHH
Confidence 445668888887532 77777777776 5789999999988776643 455322221111222
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+.+... ....+|.++--.+. ...++.+.+.|+++|.++.-
T Consensus 223 ~~~~~~----~~~~~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 223 DKKAAG----LGGGFDVIFDFVGT---QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHHHHh----cCCCceEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 222111 24579987754332 35677889999999999864
No 291
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.63 E-value=0.39 Score=46.34 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=69.2
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
+....++++||.+|+|.+ |..+..++++.+ ..++++++.+++..+.+++.. +. ..+.....
T Consensus 179 ~~~~~~g~~VlV~g~G~v--------------G~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~ 239 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPV--------------GLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEV 239 (386)
T ss_pred hccCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcc
Confidence 344556779999999764 788888888874 246999999999888877643 22 11222222
Q ss_pred c-hhhhHHHHhhcCCCCceeEEEEcCCc------------------cchHHHHHHHHhcccCCeEEEEec
Q 022597 194 L-AADSLKALILNGEASSYDFAFVDAEK------------------RMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 194 d-a~~~l~~l~~~~~~~~fD~vfiD~~~------------------~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
+ ..+.+..+ .....+|++|--.+. .+....++.+.+.|+++|.++.-.
T Consensus 240 ~~~~~~l~~~---~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 240 DDVVEALREL---TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred hHHHHHHHHH---cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 1 22222222 113469988764321 112456788889999999998754
No 292
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.59 E-value=0.34 Score=46.05 Aligned_cols=104 Identities=20% Similarity=0.268 Sum_probs=65.5
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
...++++||-.|+|.+ |..++.+++.. +. +|++++.+++..+.++ +.|...-+.....+
T Consensus 173 ~~~~g~~VlV~G~g~v--------------G~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~----~~Ga~~~i~~~~~~ 232 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGV--------------GDAAIAGAALA--GASKIIAVDIDDRKLEWAR----EFGATHTVNSSGTD 232 (358)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCceEEcCCCcC
Confidence 4456789999998754 77777788876 45 5999999999887764 34543222222223
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
..+.+..+ .....+|+||--.+. ...++.....+++||.+++-..
T Consensus 233 ~~~~i~~~---~~~~g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 233 PVEAIRAL---TGGFGADVVIDAVGR---PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred HHHHHHHH---hCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEECC
Confidence 33333332 112468988754442 2346667889999999987543
No 293
>PRK11524 putative methyltransferase; Provisional
Probab=94.58 E-value=0.069 Score=49.95 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=41.1
Q ss_pred cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc---------------ch----HHHHHHHHhcccCCeEEEEe
Q 022597 187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR---------------MY----QEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~---------------~~----~~~~~~~~~lLkpgG~ivid 243 (294)
..+++++|+.+.++.+. .++||+||.|++-. .| .+++..+.++|+|||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIP----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcc----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45789999999887663 57999999998611 12 35778888999999999874
No 294
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.49 E-value=0.32 Score=46.09 Aligned_cols=108 Identities=21% Similarity=0.193 Sum_probs=64.8
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
....+++|+-.|+|.+ |..++.+++.. +.+|++++.+++..+.+++ .|...-+.....+.
T Consensus 163 ~~~~g~~VlV~G~G~v--------------G~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~ 222 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGV--------------GGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSA 222 (349)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccH
Confidence 3456779999999764 77778888876 4689999999998776654 45432222212111
Q ss_pred hhhHHHHhhcCCCCcee----EEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 196 ADSLKALILNGEASSYD----FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD----~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.+..+..........+| .||.-.+. ...++.+.+.|++||.+++-...
T Consensus 223 ~~~~~~~~~~t~~~g~d~~~d~v~d~~g~---~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 223 REVKKLIKAFAKARGLRSTGWKIFECSGS---KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred HHHHHHHHhhcccCCCCCCcCEEEECCCC---hHHHHHHHHHHhcCCeEEEECcC
Confidence 12222221111122454 55543332 34566678899999999875543
No 295
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.38 E-value=0.57 Score=44.64 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=65.6
Q ss_pred HhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 115 VQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
....++++||=.|+ |.+ |..++.+++.. +.+|++++.+++..+.+++ ..|...-+.....
T Consensus 154 ~~~~~g~~VlV~GaaG~v--------------G~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~ 214 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAV--------------GQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEE 214 (348)
T ss_pred cCCCCCCEEEEecCccHH--------------HHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCc
Confidence 44556789999998 432 77777788876 5789999999887665542 3465432222111
Q ss_pred -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
+..+.+..+ . .+.+|++|-..+. ..++.+.+.|++||.+++-.
T Consensus 215 ~~~~~~i~~~---~-~~gvD~v~d~vG~----~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 215 PDLDAALKRY---F-PEGIDIYFDNVGG----DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred ccHHHHHHHH---C-CCCcEEEEECCCH----HHHHHHHHHhccCCEEEEEC
Confidence 333333332 1 2469988854442 35678889999999998643
No 296
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.36 E-value=0.065 Score=44.50 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=39.9
Q ss_pred cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccc-hHHHHHHHHhcccCCeEEEEecc
Q 022597 187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRM-YQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~-~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+++..||+.+.++.+ ...+|.+|.|+- ++. -.++|+.+.++++|||++.-..+
T Consensus 32 ~L~L~~gDa~~~l~~l-----~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~ 91 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL-----DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS 91 (124)
T ss_dssp EEEEEES-HHHHHHHB------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--
T ss_pred EEEEEEcHHHHHHHhC-----cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec
Confidence 4678899999999987 589999999964 222 47899999999999999976544
No 297
>PLN02740 Alcohol dehydrogenase-like
Probab=94.12 E-value=0.5 Score=45.45 Aligned_cols=103 Identities=15% Similarity=0.229 Sum_probs=65.5
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH- 192 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~- 192 (294)
.....+++||-+|+|.+ |..++.+++.. +. +|+++|.+++.++.+++ .|...-+....
T Consensus 194 ~~~~~g~~VlV~G~G~v--------------G~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~ 253 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAV--------------GLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGITDFINPKDS 253 (381)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCcEEEecccc
Confidence 44566789999999765 77777888876 35 69999999998877754 45533222211
Q ss_pred -cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEec
Q 022597 193 -GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN 244 (294)
Q Consensus 193 -gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~ 244 (294)
.+..+.+..+. .+.+|+||--.+.. ..++.....+++| |.+++-.
T Consensus 254 ~~~~~~~v~~~~----~~g~dvvid~~G~~---~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 254 DKPVHERIREMT----GGGVDYSFECAGNV---EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred cchHHHHHHHHh----CCCCCEEEECCCCh---HHHHHHHHhhhcCCCEEEEEc
Confidence 11223333331 23699888665532 4566677788886 8877633
No 298
>PRK13699 putative methylase; Provisional
Probab=94.10 E-value=0.083 Score=48.09 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=40.0
Q ss_pred EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc------------------chHHHHHHHHhcccCCeEEEE
Q 022597 188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------MYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~------------------~~~~~~~~~~~lLkpgG~ivi 242 (294)
.++++||+.+.++.+. ++++|+||.|++-. -+..+++.+.+.|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lp----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3688999999988874 68999999997621 123566777899999999875
No 299
>PLN02827 Alcohol dehydrogenase-like
Probab=94.10 E-value=0.5 Score=45.61 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=64.6
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE--c
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--G 193 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~--g 193 (294)
+...+++||-.|+|.+ |..++.++++.. ...+++++.+++..+.|+ +.|...-+.... .
T Consensus 190 ~~~~g~~VlV~G~G~v--------------G~~~iqlak~~G-~~~vi~~~~~~~~~~~a~----~lGa~~~i~~~~~~~ 250 (378)
T PLN02827 190 DVSKGSSVVIFGLGTV--------------GLSVAQGAKLRG-ASQIIGVDINPEKAEKAK----TFGVTDFINPNDLSE 250 (378)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCcEEEcccccch
Confidence 4556789999998764 777777888763 236889999998776664 356532222211 1
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEec
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN 244 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~ 244 (294)
+..+.+..+. .+.+|+||--.+. ...+..+.+.+++| |.+++-.
T Consensus 251 ~~~~~v~~~~----~~g~d~vid~~G~---~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 251 PIQQVIKRMT----GGGADYSFECVGD---TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred HHHHHHHHHh----CCCCCEEEECCCC---hHHHHHHHHhhccCCCEEEEEC
Confidence 2222333321 2369988865543 23466778889998 9998643
No 300
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.98 E-value=0.13 Score=46.36 Aligned_cols=105 Identities=9% Similarity=0.062 Sum_probs=63.8
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHH------HHHHHHHHHhCCCCcEEE
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSL------EVAKKYYERAGVSHKVKI 190 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~------~~A~~~~~~~gl~~~v~~ 190 (294)
..++..|+|+=.|. ||.|.-++.++.+.|.|++.-.++-.. ...+...++.... +++.
T Consensus 46 lkpg~tVid~~PGg---------------Gy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~ 109 (238)
T COG4798 46 LKPGATVIDLIPGG---------------GYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEV 109 (238)
T ss_pred cCCCCEEEEEecCC---------------ccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhh
Confidence 34556999999998 999999999998888999886655311 1112222222222 2444
Q ss_pred EEcchhhhHHHHhhcCCCCceeEEEEcC----------CccchHHHHHHHHhcccCCeEEEEec
Q 022597 191 KHGLAADSLKALILNGEASSYDFAFVDA----------EKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~----------~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
+..+..... ..+..|+++... ........+..+.+.|||||++++.+
T Consensus 110 ~~~~~~A~~-------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 110 IGKPLVALG-------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred hCCcccccC-------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 332222111 145566664311 12335677888899999999987754
No 301
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.83 E-value=0.63 Score=43.53 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=63.5
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
.+.++++||=+|+|.+ |..++.+++.. +.+ |++++.+++..+.++ +.|...-+.....+
T Consensus 160 ~~~~g~~vlV~G~G~v--------------G~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~ 219 (339)
T cd08239 160 GVSGRDTVLVVGAGPV--------------GLGALMLARAL--GAEDVIGVDPSPERLELAK----ALGADFVINSGQDD 219 (339)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEECCCHHHHHHHH----HhCCCEEEcCCcch
Confidence 4456779998998754 77777777776 456 999999998776654 34543222222122
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.+.+..+. ....+|++|--.+. ...++...+.|+++|.+++-.
T Consensus 220 -~~~~~~~~---~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 220 -VQEIRELT---SGAGADVAIECSGN---TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred -HHHHHHHh---CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 22222221 13469998865543 234566778999999998643
No 302
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.74 E-value=0.58 Score=41.18 Aligned_cols=95 Identities=17% Similarity=0.320 Sum_probs=54.9
Q ss_pred cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHH------------HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee
Q 022597 146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 212 (294)
Q Consensus 146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~------------~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD 212 (294)
||.++.+|..+.. +-+|+++|++++.++..++ .+++..-..+.++. .|..+.+ ...|
T Consensus 9 GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---------~~ad 78 (185)
T PF03721_consen 9 GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---------KDAD 78 (185)
T ss_dssp STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH---------HH-S
T ss_pred CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh---------hccc
Confidence 6666666665532 5699999999997766542 11111112233332 2332222 3468
Q ss_pred EEEEcCC----------ccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597 213 FAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 213 ~vfiD~~----------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~ 250 (294)
++|+..+ ........+.+.+.+++|-++++......|.
T Consensus 79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt 126 (185)
T PF03721_consen 79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT 126 (185)
T ss_dssp EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH
T ss_pred eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee
Confidence 8887644 1124667777888999999999999888886
No 303
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.66 E-value=0.71 Score=40.13 Aligned_cols=112 Identities=21% Similarity=0.151 Sum_probs=66.8
Q ss_pred CCCCCCHHHHHHHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597 99 SQMQVSPDQAQLLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK 176 (294)
Q Consensus 99 ~~~~v~~~~~~lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~ 176 (294)
+|.--++++++.|...+.. .+..+|+=|||=+ -+ ..+.....++.+++..|.|.+...
T Consensus 3 sQfwYs~~T~~~l~~~l~~~~~~~~~iaclstPs---------------l~--~~l~~~~~~~~~~~Lle~D~RF~~--- 62 (162)
T PF10237_consen 3 SQFWYSDETAEFLARELLDGALDDTRIACLSTPS---------------LY--EALKKESKPRIQSFLLEYDRRFEQ--- 62 (162)
T ss_pred cccccCHHHHHHHHHHHHHhcCCCCEEEEEeCcH---------------HH--HHHHhhcCCCccEEEEeecchHHh---
Confidence 3445677777777776654 4456899998855 22 222222234678999999987542
Q ss_pred HHHHHhCCCCcEEEEEcchhh--hHH-HHhhcCCCCceeEEEEcCCc---cchHHHHHHHHhcccCCeEEEEe
Q 022597 177 KYYERAGVSHKVKIKHGLAAD--SLK-ALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 177 ~~~~~~gl~~~v~~~~gda~~--~l~-~l~~~~~~~~fD~vfiD~~~---~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.| .. .++.=|... .++ .+ .++||+|++|++- +-...+.+.+.-++++++-+++-
T Consensus 63 -----~~--~~-~F~fyD~~~p~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 63 -----FG--GD-EFVFYDYNEPEELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred -----cC--Cc-ceEECCCCChhhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 22 12 233333322 222 23 5799999999982 23344455666677887777654
No 304
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.62 E-value=0.13 Score=49.85 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=83.6
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH------
Q 022597 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE------ 173 (294)
Q Consensus 100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~------ 173 (294)
.-.++++..-+++.++...+++-|.|=-+|| |..-+..+. -|+.|+|.|+|-.++.
T Consensus 189 nTSmDAeLSli~AN~Amv~pGdivyDPFVGT---------------GslLvsaa~---FGa~viGtDIDyr~vragrg~~ 250 (421)
T KOG2671|consen 189 NTSMDAELSLIMANQAMVKPGDIVYDPFVGT---------------GSLLVSAAH---FGAYVIGTDIDYRTVRAGRGED 250 (421)
T ss_pred CcccchhHHHHHhhhhccCCCCEEecCcccc---------------Cceeeehhh---hcceeeccccchheeecccCCC
Confidence 4467888888888888888888888866666 544333333 2689999999998876
Q ss_pred -HHHHHHHHhCCCC-cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-------------------------------
Q 022597 174 -VAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK------------------------------- 220 (294)
Q Consensus 174 -~A~~~~~~~gl~~-~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~------------------------------- 220 (294)
-.+.|+++.|.++ -+.+..+|...- .+.. ...||.|+.|++-
T Consensus 251 ~si~aNFkQYg~~~~fldvl~~D~sn~--~~rs---n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~ 325 (421)
T KOG2671|consen 251 ESIKANFKQYGSSSQFLDVLTADFSNP--PLRS---NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTE 325 (421)
T ss_pred cchhHhHHHhCCcchhhheeeecccCc--chhh---cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccc
Confidence 4578999999554 467777776532 1111 4689999999760
Q ss_pred -----cchHHHHHHHHhcccCCeEEEE
Q 022597 221 -----RMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 221 -----~~~~~~~~~~~~lLkpgG~ivi 242 (294)
..+...+....+.|..||.+++
T Consensus 326 ~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 326 QYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred hhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 0023455555688999999975
No 305
>PRK13699 putative methylase; Provisional
Probab=93.62 E-value=0.087 Score=47.93 Aligned_cols=56 Identities=9% Similarity=-0.014 Sum_probs=38.8
Q ss_pred HHHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 109 QLLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 109 ~lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
.++..++.. .++..|||--||+ |..+++..+ + +-+.+|+|++++..+.|.++++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gs---------------gtt~~aa~~-~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGS---------------GSTCVAALQ-S--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCC---------------CHHHHHHHH-c--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 345555432 3456788877776 655554443 2 468899999999999999998763
No 306
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.37 E-value=0.41 Score=44.43 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH-----HhCCCCcEEEEEc
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-----RAGVSHKVKIKHG 193 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~-----~~gl~~~v~~~~g 193 (294)
...+|||+|+|| |..++..+... ...++.-|... ..+..+.+.. .+++...+.+..-
T Consensus 86 ~~~~vlELGsGt---------------glvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L 147 (248)
T KOG2793|consen 86 KYINVLELGSGT---------------GLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAIL 147 (248)
T ss_pred cceeEEEecCCc---------------cHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEE
Confidence 456899999999 99999888865 46666555543 3333333322 2233323444332
Q ss_pred chhhh--HHHHhhcCCCCc-eeEEEE-cCC--ccchHHHHHHHHhcccCCeEEEEe
Q 022597 194 LAADS--LKALILNGEASS-YDFAFV-DAE--KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 194 da~~~--l~~l~~~~~~~~-fD~vfi-D~~--~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+..+. .... .+. +|+|+. |.. .+.+......+..+|..+|++.+-
T Consensus 148 ~Wg~~~~~~~~-----~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 148 VWGNALDVSFR-----LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred ecCCcccHhhc-----cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 22221 1111 233 899875 332 456777888888899999855544
No 307
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.35 E-value=1.1 Score=42.97 Aligned_cols=104 Identities=17% Similarity=0.232 Sum_probs=64.9
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH- 192 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~- 192 (294)
.....+++||=.|+|.+ |..++.+|+.. +. +|+++|.+++..+.+++ .|...-+....
T Consensus 181 ~~~~~g~~VlV~G~G~i--------------G~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~ 240 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGI--------------GLSVIQGARMA--KASRIIAIDINPAKFELAKK----LGATDCVNPNDY 240 (368)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----hCCCeEEccccc
Confidence 34456789999999764 77778888876 35 79999999998777644 45533222211
Q ss_pred -cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597 193 -GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 245 (294)
Q Consensus 193 -gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v 245 (294)
.+..+.+.++. .+.+|++|--.+. ...+..+.+.+++| |.+++-..
T Consensus 241 ~~~~~~~v~~~~----~~g~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 241 DKPIQEVIVEIT----DGGVDYSFECIGN---VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred chhHHHHHHHHh----CCCCCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEec
Confidence 11122222221 2368988865542 34566778889886 88775443
No 308
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.21 E-value=0.5 Score=44.77 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=62.3
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeC---ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACER---DARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~---~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
..+++|+-+|+|.+ |..+..+++.. +.+|++++. +++..+.+ ++.|... +.....+
T Consensus 171 ~~g~~vlI~G~G~v--------------G~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~----~~~Ga~~-v~~~~~~ 229 (355)
T cd08230 171 WNPRRALVLGAGPI--------------GLLAALLLRLR--GFEVYVLNRRDPPDPKADIV----EELGATY-VNSSKTP 229 (355)
T ss_pred CCCCEEEEECCCHH--------------HHHHHHHHHHc--CCeEEEEecCCCCHHHHHHH----HHcCCEE-ecCCccc
Confidence 35678999999865 88888888876 468999987 56655544 4455431 2211111
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
..+ . .. ...+|.||--.+.. ..++...+.|++||.+++-..
T Consensus 230 ~~~----~-~~--~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 230 VAE----V-KL--VGEFDLIIEATGVP---PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred hhh----h-hh--cCCCCEEEECcCCH---HHHHHHHHHccCCcEEEEEec
Confidence 111 1 11 35799988766532 367778899999999986443
No 309
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.19 E-value=0.28 Score=46.65 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=55.6
Q ss_pred cccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC
Q 022597 140 ILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 218 (294)
Q Consensus 140 ~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~ 218 (294)
|+|||||.+++.+..... +.+ +.++|+++...+.-+.++. + .+..+|..+....- -..+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEecC
Confidence 466777777777666543 344 5689999998887777653 1 34567776654321 24589887543
Q ss_pred C--------c----cc-----hHHHHHHHHhcccCCeEEEEecc
Q 022597 219 E--------K----RM-----YQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 219 ~--------~----~~-----~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+ + .+ +.++++.+ +.++|. ++++.||
T Consensus 68 PCq~fS~ag~~~~~~d~r~~L~~~~~r~i-~~~~P~-~~v~ENV 109 (315)
T TIGR00675 68 PCQPFSIAGKRKGFEDTRGTLFFEIVRIL-KEKKPK-FFLLENV 109 (315)
T ss_pred CCcccchhcccCCCCCchhhHHHHHHHHH-hhcCCC-EEEeecc
Confidence 3 1 01 33344333 456775 8888998
No 310
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.15 E-value=1.3 Score=41.50 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=64.3
Q ss_pred HhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 115 VQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
....++++||=.|+ |.+ |..++.+++.. +.++++++.+++..+.+++. .|..+-+.....
T Consensus 147 ~~~~~g~~VlI~Ga~G~v--------------G~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~ 207 (338)
T cd08295 147 CKPKKGETVFVSAASGAV--------------GQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEE 207 (338)
T ss_pred cCCCCCCEEEEecCccHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCc
Confidence 44566789998887 332 66777777776 57899999888876665542 455432221111
Q ss_pred -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+..+.+..+ . ...+|++|--.+. ..++.+.+.|+++|.++.-
T Consensus 208 ~~~~~~i~~~---~-~~gvd~v~d~~g~----~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 208 PDLDAALKRY---F-PNGIDIYFDNVGG----KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred ccHHHHHHHh---C-CCCcEEEEECCCH----HHHHHHHHHhccCcEEEEe
Confidence 333333332 1 2569998854432 4577888999999998853
No 311
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.11 E-value=1.5 Score=40.09 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=64.0
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
.++++||-+|+|.+ |..+..++++. +. +|+++|.+++..+.+++ .|...-+.. .+..
T Consensus 119 ~~g~~VlV~G~G~v--------------G~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~ 176 (280)
T TIGR03366 119 LKGRRVLVVGAGML--------------GLTAAAAAAAA--GAARVVAADPSPDRRELALS----FGATALAEP--EVLA 176 (280)
T ss_pred CCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhH
Confidence 35678999999764 77777788876 34 48899999987766654 454321111 1111
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
+.+..+. ....+|.+|.-.+. ...++.+.+.|+++|.++.-...
T Consensus 177 ~~~~~~~---~~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 177 ERQGGLQ---NGRGVDVALEFSGA---TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred HHHHHHh---CCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence 2222221 12469998865543 34567788999999999876543
No 312
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.82 E-value=1 Score=43.84 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=62.5
Q ss_pred hhCCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHh----CCCCcEEE
Q 022597 117 ILGAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERA----GVSHKVKI 190 (294)
Q Consensus 117 ~~~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~----gl~~~v~~ 190 (294)
...+++|+=+| +|.+ |..++.++++... ..+|+++|.+++.++.+++.+... |.. ..+
T Consensus 173 ~~~g~~VlV~G~~G~v--------------G~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~ 236 (410)
T cd08238 173 IKPGGNTAILGGAGPM--------------GLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLY 236 (410)
T ss_pred CCCCCEEEEEeCCCHH--------------HHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEE
Confidence 34557888887 5543 7777777777532 247999999999999888753211 221 122
Q ss_pred EE----cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 191 KH----GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 191 ~~----gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+. .+..+.+..+. ....+|.+|...+. ...++...+.++++|.+++
T Consensus 237 i~~~~~~~~~~~v~~~t---~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 237 VNPATIDDLHATLMELT---GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred ECCCccccHHHHHHHHh---CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence 21 12222232221 13469999876542 3566778889998875543
No 313
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.81 E-value=1.4 Score=41.21 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=59.3
Q ss_pred CeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 121 QRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 121 ~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++||=.|. |.+ |..++.++++. +. +|++++.+++..+.+++. .|..+-+.....+..+.
T Consensus 156 ~~VlI~ga~g~v--------------G~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~ 216 (345)
T cd08293 156 QTMVVSGAAGAC--------------GSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAER 216 (345)
T ss_pred CEEEEECCCcHH--------------HHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHH
Confidence 78988886 332 77777778776 45 799999998876655442 46543222222223333
Q ss_pred HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+..+ . ...+|.||-..+.. .++.+++.|+++|.++.
T Consensus 217 i~~~---~-~~gvd~vid~~g~~----~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 217 LREL---C-PEGVDVYFDNVGGE----ISDTVISQMNENSHIIL 252 (345)
T ss_pred HHHH---C-CCCceEEEECCCcH----HHHHHHHHhccCCEEEE
Confidence 3333 1 25699888544321 35678899999999885
No 314
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.72 E-value=1 Score=42.34 Aligned_cols=104 Identities=15% Similarity=0.234 Sum_probs=63.2
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
....+++||=.|+|.+ |..++.+++... .+ |++++.+++..+.++ +.|...-+.....+
T Consensus 157 ~~~~g~~vlV~G~g~v--------------G~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~ 216 (347)
T PRK10309 157 QGCEGKNVIIIGAGTI--------------GLLAIQCAVALG--AKSVTAIDINSEKLALAK----SLGAMQTFNSREMS 216 (347)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC--CCeEEEECCCHHHHHHHH----HcCCceEecCcccC
Confidence 3345679998998764 777777888763 54 789999998877654 34543212221112
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+.+..+. ....+|-+++|..-. ...+....+.|++||.+++-..
T Consensus 217 -~~~~~~~~---~~~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 217 -APQIQSVL---RELRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred -HHHHHHHh---cCCCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence 12222221 134688455554321 3466778899999999987544
No 315
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=92.66 E-value=1.6 Score=41.59 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=65.7
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
.+...+++||=.|+|.+ |..++.+++..+ . +|++++.+++..+.+++ .|...-+.....
T Consensus 182 ~~~~~g~~VlV~G~G~v--------------G~~a~~~ak~~G--~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~ 241 (368)
T cd08300 182 AKVEPGSTVAVFGLGAV--------------GLAVIQGAKAAG--ASRIIGIDINPDKFELAKK----FGATDCVNPKDH 241 (368)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----cCCCEEEccccc
Confidence 34556789999998764 777778888763 5 79999999998776643 455322222111
Q ss_pred --chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597 194 --LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 245 (294)
Q Consensus 194 --da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v 245 (294)
+..+.+.++. .+.+|+||--.+. ...+..+.+.++++ |.++.-..
T Consensus 242 ~~~~~~~v~~~~----~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 242 DKPIQQVLVEMT----DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred chHHHHHHHHHh----CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEcc
Confidence 1222233321 2369999865542 24566778889887 88876443
No 316
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.62 E-value=1.6 Score=40.30 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=64.0
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
.....++++||=.|...++ |..++.+++.. +.+|++++.+++..+.+++ .|..+-+.....
T Consensus 138 ~~~~~~g~~vlI~ga~g~v-------------G~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~ 198 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAV-------------GSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTV 198 (329)
T ss_pred hcCCCCCCEEEEecCccHH-------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCc
Confidence 3445667889888853311 76777778776 5789999999887766544 465432222222
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+..+.+..+ . ...+|+||--.+. ..++..++.|+++|.++.-
T Consensus 199 ~~~~~v~~~---~-~~gvd~vld~~g~----~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 199 SLEEALKEA---A-PDGIDCYFDNVGG----EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cHHHHHHHH---C-CCCcEEEEECCCH----HHHHHHHHhhccCCEEEEE
Confidence 332333322 1 2569988843332 4567888999999998753
No 317
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.62 E-value=1.3 Score=41.86 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=61.5
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
....++++||-.|+|.+ |..+..+++.. +.+|++++.+++..+.++ +.|...-+.
T Consensus 161 ~~~~~g~~VlV~G~g~i--------------G~~a~~~a~~~--G~~vi~~~~~~~~~~~a~----~~Ga~~vi~----- 215 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGS--------------AHLTAQVALAQ--GATVHVMTRGAAARRLAL----ALGAASAGG----- 215 (329)
T ss_pred cCCCCCCEEEEEcCCHH--------------HHHHHHHHHHC--CCeEEEEeCChHHHHHHH----HhCCceecc-----
Confidence 34456779999998643 66666677765 578999999998766554 466543221
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
..+. ..+.+|.++..... ...++...+.|++||.+++-..
T Consensus 216 ~~~~--------~~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 216 AYDT--------PPEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred cccc--------CcccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 1110 02457876653332 2467788899999999987544
No 318
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.62 E-value=1.2 Score=39.19 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=62.3
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++++||-.|+|. . |.....+++.. +.+|++++.+++..+.+++ .|...-+.....+..+
T Consensus 133 ~~~~~vli~g~~~-~-------------G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~ 192 (271)
T cd05188 133 KPGDTVLVLGAGG-V-------------GLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEE 192 (271)
T ss_pred CCCCEEEEECCCH-H-------------HHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHH
Confidence 5677999999874 2 77777777765 4889999999887666543 3432212221112221
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.+. ....+.+|.++...... ..++.+.+.|+++|.++.-.
T Consensus 193 ~~~----~~~~~~~d~vi~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 193 ELR----LTGGGGADVVIDAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred HHH----HhcCCCCCEEEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 111 11246799998765431 45666788899999988643
No 319
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.48 E-value=0.71 Score=36.40 Aligned_cols=85 Identities=24% Similarity=0.236 Sum_probs=56.8
Q ss_pred cHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh--HHHHhhcCCCCceeEEEEcCCccc
Q 022597 146 GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAEKRM 222 (294)
Q Consensus 146 G~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~~~~ 222 (294)
|..+..+++.+..++ .|+.+|.+++..+.+++ .| +.++.||+.+. +++.. -.+.|.+++..+...
T Consensus 7 g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~----i~~a~~vv~~~~~d~ 74 (116)
T PF02254_consen 7 GRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAG----IEKADAVVILTDDDE 74 (116)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTT----GGCESEEEEESSSHH
T ss_pred CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcC----ccccCEEEEccCCHH
Confidence 778888888886566 89999999998765543 23 67889998763 33331 468999988776443
Q ss_pred hHHHHHHHHhcccCCeEEEE
Q 022597 223 YQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 223 ~~~~~~~~~~lLkpgG~ivi 242 (294)
..-..-...+.+.|...+++
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEE
Confidence 33333344466677766664
No 320
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.48 E-value=1.5 Score=41.28 Aligned_cols=106 Identities=24% Similarity=0.305 Sum_probs=66.2
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
....+++||-.|+|.+ |..++.+++..+ ...+++++.+++..+.++ ..|...-+.....+.
T Consensus 163 ~~~~g~~vlI~g~g~i--------------G~~~~~lak~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~ 223 (351)
T cd08285 163 NIKLGDTVAVFGIGPV--------------GLMAVAGARLRG-AGRIIAVGSRPNRVELAK----EYGATDIVDYKNGDV 223 (351)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCceEecCCCCCH
Confidence 4455678888888754 777777888764 236899999988776665 355532222222232
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.+.+..+. ....+|.+|-..+. ...+..+++.|+++|.++.-.+.
T Consensus 224 ~~~i~~~~---~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 224 VEQILKLT---GGKGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred HHHHHHHh---CCCCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEeccc
Confidence 22232221 13469988865442 24577888999999998864443
No 321
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=0.81 Score=39.75 Aligned_cols=113 Identities=13% Similarity=0.064 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597 106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 185 (294)
Q Consensus 106 ~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~ 185 (294)
+|-+-...++...+..+.+|+|+|- |...++.++.. --.-+++|+||=.+.+++-..-++|+.
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGD---------------GRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~ 121 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGD---------------GRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCA 121 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCC---------------ceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcc
Confidence 3333333444444556899999999 98888777753 135689999999999999988899999
Q ss_pred CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
..+.|...|.... . -..|..+.+-......+.+-..+..-+..|..++..
T Consensus 122 k~trf~RkdlwK~--d------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 122 KSTRFRRKDLWKV--D------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred cchhhhhhhhhhc--c------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 8888887666432 1 245666655554555566666666677777777654
No 322
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.95 E-value=2.6 Score=39.12 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=63.4
Q ss_pred HHhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597 114 LVQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 192 (294)
Q Consensus 114 l~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~ 192 (294)
.....++++||=.|. |.+ |..++.+++.. +.++++++.+++..+.++ +.|...-+....
T Consensus 133 ~~~~~~g~~VLI~ga~g~v--------------G~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~ 192 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAV--------------GSVVGQIAKLK--GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKT 192 (325)
T ss_pred HhCCCCCCEEEEeCCccHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCEEEeccc
Confidence 344566789988885 332 77777777775 578999999988766554 456532222211
Q ss_pred c-chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 193 G-LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 193 g-da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
. +..+.+... ..+.+|++|-..+. ..++..++.|++||.++.-
T Consensus 193 ~~~~~~~~~~~----~~~gvdvv~d~~G~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 193 VKSLEETLKKA----SPDGYDCYFDNVGG----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred cccHHHHHHHh----CCCCeEEEEECCCH----HHHHHHHHHhCcCcEEEEe
Confidence 1 222222222 13469998854432 3457788999999999864
No 323
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.92 E-value=1.2 Score=42.94 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=66.9
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE--E
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--H 192 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~--~ 192 (294)
+...++..|.-+|.|.| |.+.+.-+++.+ .+++++||+|++-.+.|++ .|..+-+.-. .
T Consensus 188 Akv~~GstvAVfGLG~V--------------GLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~----fGaTe~iNp~d~~ 248 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGV--------------GLAVAMGAKAAG-ASRIIGVDINPDKFEKAKE----FGATEFINPKDLK 248 (375)
T ss_pred cccCCCCEEEEEecchH--------------HHHHHHhHHhcC-cccEEEEecCHHHHHHHHh----cCcceecChhhcc
Confidence 45567789999999765 655555566543 6899999999999987765 4443322221 1
Q ss_pred cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEeccc
Q 022597 193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVL 246 (294)
Q Consensus 193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~vl 246 (294)
....+.+.++- ++.+|+-|.-.+. .+.+..++..-++| |.-++=.+-
T Consensus 249 ~~i~evi~EmT----dgGvDysfEc~G~---~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 249 KPIQEVIIEMT----DGGVDYSFECIGN---VSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred ccHHHHHHHHh----cCCceEEEEecCC---HHHHHHHHHHhhcCCCeEEEEEec
Confidence 13445555542 5789999976543 34455555566667 666554443
No 324
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.78 E-value=2.2 Score=40.56 Aligned_cols=105 Identities=16% Similarity=0.240 Sum_probs=64.3
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG- 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g- 193 (294)
....++++||=.|+|.+ |..++.+++..+ ..+|++++.+++..+.++ ..|...-+.....
T Consensus 183 ~~~~~g~~VlV~G~g~v--------------G~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~----~~Ga~~~i~~~~~~ 243 (369)
T cd08301 183 AKVKKGSTVAIFGLGAV--------------GLAVAEGARIRG-ASRIIGVDLNPSKFEQAK----KFGVTEFVNPKDHD 243 (369)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCceEEcccccc
Confidence 44566789999998754 777777887763 237999999998877664 3554322222110
Q ss_pred -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597 194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 245 (294)
Q Consensus 194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v 245 (294)
+..+.+..+. .+.+|++|--.+. ...+..+.+.+++| |.+++-..
T Consensus 244 ~~~~~~v~~~~----~~~~d~vid~~G~---~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 244 KPVQEVIAEMT----GGGVDYSFECTGN---IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred hhHHHHHHHHh----CCCCCEEEECCCC---hHHHHHHHHHhhcCCCEEEEECc
Confidence 1122233321 2368987754432 34566677888996 88876444
No 325
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.75 E-value=0.12 Score=51.42 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=51.0
Q ss_pred ccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc-EEEEEcchhhhHH
Q 022597 139 SILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLK 200 (294)
Q Consensus 139 ~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~-v~~~~gda~~~l~ 200 (294)
-+.|+|||.+..++-.+.. +++|++-|+++++++..+.+++.+.+.+. ++++..|+.+.++
T Consensus 252 vv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 252 VVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred hhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 3567788877776666554 79999999999999999999999888876 9999999988774
No 326
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.72 E-value=0.7 Score=47.14 Aligned_cols=101 Identities=16% Similarity=0.214 Sum_probs=61.7
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE------
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH------ 192 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~------ 192 (294)
++.+|+-+|+|.+ |..+..+++.+ ++.|+.+|.+++.++.+++ .|... +++-.
T Consensus 163 p~akVlViGaG~i--------------Gl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~~-v~v~~~e~g~~ 221 (511)
T TIGR00561 163 PPAKVLVIGAGVA--------------GLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAEF-LELDFKEEGGS 221 (511)
T ss_pred CCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCeE-Eeccccccccc
Confidence 4579999999874 88888888877 4779999999998776654 33321 11111
Q ss_pred ---------cchhhhHHHHhhcCCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEE
Q 022597 193 ---------GLAADSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 193 ---------gda~~~l~~l~~~~~~~~fD~vfiD~---~~~~~~~~~~~~~~lLkpgG~iv 241 (294)
.+..+...++..+ ....+|+||.-+ +++...-..+...+.+|||++|+
T Consensus 222 ~~gYa~~~s~~~~~~~~~~~~e-~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 222 GDGYAKVMSEEFIAAEMELFAA-QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred cccceeecCHHHHHHHHHHHHH-HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1111111111110 025699997655 22222235667789999999876
No 327
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.62 E-value=0.77 Score=42.86 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=58.2
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
++++|+=+|+|.+ |..++.+++..+ ...|+++|.+++.++.|.+. . ++ |..+.
T Consensus 144 ~~~~vlV~G~G~v--------------G~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~ 196 (308)
T TIGR01202 144 KVLPDLIVGHGTL--------------GRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD 196 (308)
T ss_pred CCCcEEEECCCHH--------------HHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc
Confidence 4568998999875 888888888764 23477889888876655431 1 11 11110
Q ss_pred HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
. ...+|.||--.+. ...++.+.++|++||.+++-.
T Consensus 197 ---~-----~~g~Dvvid~~G~---~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 197 ---P-----RRDYRAIYDASGD---PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ---c-----CCCCCEEEECCCC---HHHHHHHHHhhhcCcEEEEEe
Confidence 0 3468988866553 245677889999999999643
No 328
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=91.60 E-value=2.1 Score=40.39 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=61.4
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
++++||=.|+|.+ |..+..+++.. +. +|++++.+++..+.+ ++.|...-+.....+..+
T Consensus 177 ~g~~vlI~g~g~v--------------G~~~~~lak~~--G~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~ 236 (361)
T cd08231 177 AGDTVVVQGAGPL--------------GLYAVAAAKLA--GARRVIVIDGSPERLELA----REFGADATIDIDELPDPQ 236 (361)
T ss_pred CCCEEEEECCCHH--------------HHHHHHHHHHc--CCCeEEEEcCCHHHHHHH----HHcCCCeEEcCcccccHH
Confidence 5678888888654 77777788876 45 899999988876555 345653322222111111
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
....+........+|++|--.+. ...++..++.|+++|.++.-
T Consensus 237 ~~~~i~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 237 RRAIVRDITGGRGADVVIEASGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred HHHHHHHHhCCCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence 11112111123569988865432 24566778899999999854
No 329
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.50 E-value=2.2 Score=40.78 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=68.6
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
.+...+++||-.|...|- |..++.|++++. ++++++..+++..+ .+++.|-++-+.+...|
T Consensus 138 ~~l~~g~~VLV~gaaGgV-------------G~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~ 198 (326)
T COG0604 138 AGLKPGETVLVHGAAGGV-------------GSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREED 198 (326)
T ss_pred cCCCCCCEEEEecCCchH-------------HHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCccc
Confidence 445567899999854411 666667777763 46777777775443 45566766556666666
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
..+.++++. ....+|+||-..+. +.+......|+++|.++.-..
T Consensus 199 ~~~~v~~~t---~g~gvDvv~D~vG~----~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 199 FVEQVRELT---GGKGVDVVLDTVGG----DTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred HHHHHHHHc---CCCCceEEEECCCH----HHHHHHHHHhccCCEEEEEec
Confidence 666665542 13469999866543 456667888999999887444
No 330
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.29 E-value=0.4 Score=48.96 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=72.5
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHH---CCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~---~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++.-+|.|. |-..-+..++ .....+++++|.||.++-..+. .+..+..++|+++.+|.++
T Consensus 369 tVimvlGaGR---------------GPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~ 432 (649)
T KOG0822|consen 369 TVIMVLGAGR---------------GPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRK 432 (649)
T ss_pred EEEEEecCCC---------------ccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccc
Confidence 4677789998 8766554444 3345789999999998765544 5555677899999999988
Q ss_pred hHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEEe
Q 022597 198 SLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+-+. ..+.|+++.. ++-+--++.+.-+.+.|+|+|+-|-.
T Consensus 433 w~ap------~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 433 WNAP------REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred cCCc------hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 6421 2678888532 22344578888899999999887643
No 331
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.24 E-value=2.4 Score=39.80 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=65.8
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
....++++||=.|+|.+ |..++.+++.. +. +|++++.+++..+.+++ .|...-+.....
T Consensus 168 ~~~~~g~~vlI~g~g~v--------------G~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~ 227 (351)
T cd08233 168 SGFKPGDTALVLGAGPI--------------GLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEV 227 (351)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCcc
Confidence 34456678888887643 77777778776 45 78999999988776644 354322222222
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+..+.+..+ .....+|+++--.+. ...++.+++.|+++|.++.-..
T Consensus 228 ~~~~~l~~~---~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 228 DVVAEVRKL---TGGGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CHHHHHHHH---hCCCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEcc
Confidence 333333332 112459999865532 2356778889999999886433
No 332
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=91.05 E-value=3.3 Score=40.36 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=65.6
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-c
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-G 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-g 193 (294)
.....+++||=.|+|.+ |..++.+++... ...++++|.+++..+.|++ .|.. .+.... .
T Consensus 181 ~~~~~g~~VlV~G~G~i--------------G~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~ 240 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPV--------------GLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDA 240 (393)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcc
Confidence 34456678877888764 777777888764 2346677888887777654 4542 121111 1
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccc-----------hHHHHHHHHhcccCCeEEEEecc
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~-----------~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+..+.+..+. ....+|++|.-.+... ....++.+.+++++||.+++-.+
T Consensus 241 ~~~~~v~~~~---~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 241 TLPEQIEQIL---GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred cHHHHHHHHc---CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 2223233321 1246898886554321 12468888999999999998554
No 333
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.00 E-value=1.6 Score=42.13 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=66.8
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 200 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~ 200 (294)
.+|.-||-|.+ |.-+..+|..+ ++.|+-+|+|.+.+++....+. .|++.+..+...+..
T Consensus 169 ~kv~iiGGGvv--------------gtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVV--------------GTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccc--------------cchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHH
Confidence 35677888764 88888888776 5999999999998877666553 468888777765544
Q ss_pred HHhhcCCCCceeEEEEc---CCccchHHHHHHHHhcccCCeEEE
Q 022597 201 ALILNGEASSYDFAFVD---AEKRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 201 ~l~~~~~~~~fD~vfiD---~~~~~~~~~~~~~~~lLkpgG~iv 241 (294)
.+ .+.|+++-- ++.....-.++...+.++||++|+
T Consensus 228 ~v------~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 228 AV------KKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred Hh------hhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 43 578887532 223334455667788999999876
No 334
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.91 E-value=2.9 Score=39.87 Aligned_cols=105 Identities=16% Similarity=0.300 Sum_probs=64.5
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG- 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g- 193 (294)
....++++||=+|+|.+ |..+..+++..+ ..+|++++.+++..+.+++ .|..+-+....-
T Consensus 180 ~~~~~g~~vlV~G~g~v--------------G~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~ 240 (365)
T cd08277 180 AKVEPGSTVAVFGLGAV--------------GLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSD 240 (365)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEecccccc
Confidence 34456779988898764 777777888763 2379999999988776643 455322222111
Q ss_pred -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597 194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 245 (294)
Q Consensus 194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v 245 (294)
+..+.+..+. .+.+|+||--.+. ...+...++.++++ |.++.-..
T Consensus 241 ~~~~~~~~~~~----~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 241 KPVSEVIREMT----GGGVDYSFECTGN---ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred chHHHHHHHHh----CCCCCEEEECCCC---hHHHHHHHHhcccCCCEEEEEcC
Confidence 1122233321 2468988865442 24567778889885 88876444
No 335
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=90.86 E-value=3.5 Score=38.31 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=51.1
Q ss_pred cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHH
Q 022597 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE 225 (294)
Q Consensus 146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~ 225 (294)
|..++.++++. +.++++++.+++..+.+++ .|..+-+.....+..+.+..+. ....+|++|-..+..
T Consensus 157 G~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~---~~~~~d~vid~~g~~---- 223 (324)
T cd08291 157 GRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI---AKLNATIFFDAVGGG---- 223 (324)
T ss_pred HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh---CCCCCcEEEECCCcH----
Confidence 66777777776 5789999999987776654 4554322222223323333321 134689888544432
Q ss_pred HHHHHHhcccCCeEEEEe
Q 022597 226 YFELLLQLIRVGGIIVID 243 (294)
Q Consensus 226 ~~~~~~~lLkpgG~ivid 243 (294)
......+.+++||.++.-
T Consensus 224 ~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 224 LTGQILLAMPYGSTLYVY 241 (324)
T ss_pred HHHHHHHhhCCCCEEEEE
Confidence 234457788999998764
No 336
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.83 E-value=1.2 Score=43.50 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=56.7
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
.+.+|+=+|+|.+ |..+...+..+ +.+|+.+|.+++..+.+.+.+ +. .+.....+. +.
T Consensus 166 ~~~~VlViGaG~v--------------G~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~ 223 (370)
T TIGR00518 166 EPGDVTIIGGGVV--------------GTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YE 223 (370)
T ss_pred CCceEEEEcCCHH--------------HHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HH
Confidence 4567999999753 77777777766 468999999988765543322 21 122222222 22
Q ss_pred HHHHhhcCCCCceeEEEEcCCc--cchHH-HHHHHHhcccCCeEEEE
Q 022597 199 LKALILNGEASSYDFAFVDAEK--RMYQE-YFELLLQLIRVGGIIVI 242 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~--~~~~~-~~~~~~~lLkpgG~ivi 242 (294)
+.+. -..+|+||..... ...+. +-+...+.++||++|+-
T Consensus 224 l~~~-----l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 224 IEDA-----VKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred HHHH-----HccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 3332 2568999876421 11122 22555677899977654
No 337
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.40 E-value=1.8 Score=40.58 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=55.2
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCC---cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~---~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
++|.=||+ |..+..++..+... .+|+++|.+++..+.++ ..|... .+ ..+.
T Consensus 7 ~~I~IIG~-----------------G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~~~--~~-~~~~-- 60 (307)
T PRK07502 7 DRVALIGI-----------------GLIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGLGD--RV-TTSA-- 60 (307)
T ss_pred cEEEEEee-----------------CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCCCc--ee-cCCH--
Confidence 37888898 55555555554322 38999999998776554 334321 11 1121
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv 241 (294)
... ....|+|++-.+......+++.+.+.+++|++++
T Consensus 61 --~~~-----~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 61 --AEA-----VKGADLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred --HHH-----hcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 111 2467999998876666777777878888887553
No 338
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.13 E-value=3.8 Score=39.16 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=59.4
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+++||-.|+|.+ |..++.+++.. +.++++++.+++... +..++.|... .+...+. +
T Consensus 182 ~~g~~VlV~G~G~v--------------G~~avq~Ak~~--Ga~vi~~~~~~~~~~---~~~~~~Ga~~--vi~~~~~-~ 239 (360)
T PLN02586 182 EPGKHLGVAGLGGL--------------GHVAVKIGKAF--GLKVTVISSSSNKED---EAINRLGADS--FLVSTDP-E 239 (360)
T ss_pred CCCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEeCCcchhh---hHHHhCCCcE--EEcCCCH-H
Confidence 35678888999765 77778888876 467888887765432 2233456432 1111111 2
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.+... .+.+|++|--.+. ...++.+.+.|++||.++.-.
T Consensus 240 ~~~~~-----~~~~D~vid~~g~---~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 240 KMKAA-----IGTMDYIIDTVSA---VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred HHHhh-----cCCCCEEEECCCC---HHHHHHHHHHhcCCcEEEEeC
Confidence 22222 2358998854432 235677889999999988643
No 339
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=90.11 E-value=4.3 Score=37.65 Aligned_cols=102 Identities=21% Similarity=0.220 Sum_probs=64.1
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH- 192 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~- 192 (294)
......+++||=.|+|.+ |..++.+++... +.++++++.+++..+.+++ .|...-+....
T Consensus 157 ~~~~~~g~~vlV~g~g~v--------------G~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~ 217 (338)
T PRK09422 157 VSGIKPGQWIAIYGAGGL--------------GNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRV 217 (338)
T ss_pred hcCCCCCCEEEEECCcHH--------------HHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEeccccc
Confidence 344556778988897543 777777777632 5789999999998777643 45532111111
Q ss_pred cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.+..+.+... .+.+|.++++... ...++.+++.|+++|.++.
T Consensus 218 ~~~~~~v~~~-----~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 218 EDVAKIIQEK-----TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred ccHHHHHHHh-----cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEE
Confidence 1212223222 2358877777542 3567888999999999885
No 340
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.92 E-value=0.82 Score=46.33 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=45.0
Q ss_pred CCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEE
Q 022597 208 ASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM 281 (294)
Q Consensus 208 ~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~ 281 (294)
..+||+|..+.- +-.....+-.+-+.|||||.+++.|-. .+-+-.+.+.+.=++++.+
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~----------------~vl~~v~~i~~~lrW~~~~ 488 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV----------------DVLEKVKKIAKSLRWEVRI 488 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH----------------HHHHHHHHHHHhCcceEEE
Confidence 578999976632 233566777778999999999996541 1122233344555667766
Q ss_pred eecCC------ceEEEEE
Q 022597 282 VPIGD------GMTICQK 293 (294)
Q Consensus 282 lp~gd------Gl~i~~k 293 (294)
.-.-+ ++++|+|
T Consensus 489 ~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 489 HDTEDGPDGPEKILICQK 506 (506)
T ss_pred EecCCCCCCCceEEEEEC
Confidence 66644 5778776
No 341
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=89.90 E-value=2.9 Score=38.92 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=61.2
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
.+..++++||-.|+|.+ |...+.+++..+ ...+++++.+++..+.+++ .|...-+.....+
T Consensus 163 ~~~~~~~~VlI~g~g~v--------------g~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~ 223 (347)
T cd05278 163 AGIKPGSTVAVIGAGPV--------------GLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGD 223 (347)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcch
Confidence 34445678888777532 777777787763 2478888888877665543 3432212222222
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
..+.+..+. ....+|++|-..+. ...++..++.|+++|.++.-
T Consensus 224 ~~~~i~~~~---~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 224 IVEQILELT---GGRGVDCVIEAVGF---EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred HHHHHHHHc---CCCCCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence 223333221 23569988743322 24677788899999998853
No 342
>PRK08114 cystathionine beta-lyase; Provisional
Probab=89.83 E-value=5.8 Score=39.14 Aligned_cols=128 Identities=15% Similarity=0.197 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEe-CChHHHHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACE-RDARSLEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id-~~~~~~~~A~~~~~~ 181 (294)
-.|....+=..++.+-++..++-+.+|+ +.....+...+.++.+|++.+ .........++.+++
T Consensus 60 ~nPt~~~le~~la~LEg~~~a~~~~SGm---------------aAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~ 124 (395)
T PRK08114 60 GTLTHFSLQEAMCELEGGAGCALYPCGA---------------AAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSK 124 (395)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEhHHH---------------HHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHh
Confidence 4566666666777777888999999977 555544444456677777654 444556677777788
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccC---CeEEEEecccCCCcc
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRV---GGIIVIDNVLWHGKV 251 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkp---gG~ivid~vl~~g~v 251 (294)
.|+. ++++...-.+.+++.+ ...-.+|++...- ......++.+.++.+. |-.+++||....|..
T Consensus 125 ~Gi~--v~~vd~~d~~~l~~~l----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~ 193 (395)
T PRK08114 125 LGVT--TTWFDPLIGADIAKLI----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL 193 (395)
T ss_pred cCcE--EEEECCCCHHHHHHhc----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc
Confidence 7763 6665432223344432 2345788887542 1122234444444443 568899998754443
No 343
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.81 E-value=0.92 Score=42.78 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=56.0
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cchhhhHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLK 200 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gda~~~l~ 200 (294)
+|.=+|+|.+. |+.+..++++ +..|+.++..++.++..++ +.|+ .+.. +.....-.
T Consensus 4 ~I~IiGaGaiG-------------~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~ 60 (305)
T PRK05708 4 TWHILGAGSLG-------------SLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAI 60 (305)
T ss_pred eEEEECCCHHH-------------HHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcceeecc
Confidence 78889997653 4444445443 4679999998766654433 2232 1110 10000000
Q ss_pred HHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 201 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 201 ~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
........++||+||+-.--.+..+.++.+.+.+.++..++.
T Consensus 61 ~~~~~~~~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 61 PAETADAAEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred CCCCcccccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 000000135899999887545567788888899999987653
No 344
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=89.80 E-value=3.8 Score=38.14 Aligned_cols=103 Identities=17% Similarity=0.310 Sum_probs=64.5
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
.....++++||-.|+|.+ |...+.+++.. +.+++++..+++..+.+++ .|..+-+.....
T Consensus 154 ~~~l~~g~~vLI~g~g~v--------------G~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~ 213 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPI--------------GLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDE 213 (337)
T ss_pred hcCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCccc
Confidence 344556778998887642 77777788876 5889999888887765533 343332233322
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+..+.+..+. ....+|++|-..+. ...+..+.+.|+++|.++.
T Consensus 214 ~~~~~l~~~~---~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 214 DVAARLRELT---DGEGADVVIDATGN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CHHHHHHHHh---CCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 3223333321 13468998865432 2456777888999998875
No 345
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=89.60 E-value=0.95 Score=41.24 Aligned_cols=61 Identities=8% Similarity=0.118 Sum_probs=39.5
Q ss_pred cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc------CCccchHHHHHHHHhc
Q 022597 160 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD------AEKRMYQEYFELLLQL 233 (294)
Q Consensus 160 ~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD------~~~~~~~~~~~~~~~l 233 (294)
-.|+.||+++.. -.+.+.|..+.. ....+.++||+|... +.....-+.+..+.++
T Consensus 73 fdvt~IDLns~~----------------~~I~qqDFm~rp---lp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~f 133 (219)
T PF11968_consen 73 FDVTRIDLNSQH----------------PGILQQDFMERP---LPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKF 133 (219)
T ss_pred eeeEEeecCCCC----------------CCceeeccccCC---CCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 359999999842 134455554421 111135789998533 2244567888999999
Q ss_pred ccCCeE
Q 022597 234 IRVGGI 239 (294)
Q Consensus 234 LkpgG~ 239 (294)
|+|+|.
T Consensus 134 L~~~g~ 139 (219)
T PF11968_consen 134 LKPPGL 139 (219)
T ss_pred hCCCCc
Confidence 999999
No 346
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.50 E-value=7.4 Score=38.48 Aligned_cols=97 Identities=11% Similarity=0.231 Sum_probs=56.3
Q ss_pred cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcC------CCCceeEEEEcC
Q 022597 146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------EASSYDFAFVDA 218 (294)
Q Consensus 146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~------~~~~fD~vfiD~ 218 (294)
|+.+..+|..+. .+-+|+++|++++.++.. . .|. +.+...+..+.++.....| .....|+||+..
T Consensus 12 G~~G~~~A~~La~~G~~V~~~D~~~~~v~~l----~-~g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 12 GYIGLPTAAAFASRQKQVIGVDINQHAVDTI----N-RGE---IHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred chhhHHHHHHHHhCCCEEEEEeCCHHHHHHH----H-CCC---CCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 666666666653 257899999999977642 2 121 2222222222222211111 113578998876
Q ss_pred Cc----------cchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597 219 EK----------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 219 ~~----------~~~~~~~~~~~~lLkpgG~ivid~vl~~g~ 250 (294)
+. .......+.+.+.+++|.++|.......|.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 53 234556677788899998888777655553
No 347
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=89.33 E-value=8.1 Score=35.82 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=64.9
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC--CCcEEEEEcchhh
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAAD 197 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl--~~~v~~~~gda~~ 197 (294)
...|+.+|| |.-+...-...+.+.+++=+|. |+.++.-++.+++.|. ..+.+++..|..+
T Consensus 82 ~~qvV~LGa-----------------GlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 82 IRQVVILGA-----------------GLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred CcEEEEeCC-----------------ccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 457999999 6666665443333344544444 3456666667776553 4678888888764
Q ss_pred h-HHHHhhcCC-CCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEecc
Q 022597 198 S-LKALILNGE-ASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 198 ~-l~~l~~~~~-~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
. ...+...+- .+..-+++.-+ .......+|+.+.....||+.|++|-+
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 3 334433221 11222232221 245567888888888889999999976
No 348
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=89.29 E-value=5.7 Score=37.19 Aligned_cols=147 Identities=18% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
+.......+...-+..++.. |..-+ |.. +-....+++.-++..+|+.|+-....++++.
T Consensus 73 lpa~l~~yl~~i~~lN~~~~-l~~Yp-----------------GSP-~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~-- 131 (279)
T COG2961 73 LPAELEPYLDAVRQLNPGGG-LRYYP-----------------GSP-LLARQLLREQDRLVLTELHPSDAPLLRNNFA-- 131 (279)
T ss_pred chHHHHHHHHHHHHhCCCCC-cccCC-----------------CCH-HHHHHHcchhceeeeeecCccHHHHHHHHhC--
Confidence 44555556666555555444 44444 432 2223334556799999999999999998887
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhccc--CCeEEEEecccCCCcccCcccC
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIR--VGGIIVIDNVLWHGKVADQMVN 257 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLk--pgG~ivid~vl~~g~v~~~~~~ 257 (294)
-..++++..+|....+...... .+.=-+|++|++ +.+|+...+.+.+.++ ++|+.. +|.-.+
T Consensus 132 -~d~~vrv~~~DG~~~l~a~LPP--~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~ya----iWYPik------ 198 (279)
T COG2961 132 -GDRRVRVLRGDGFLALKAHLPP--KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYA----IWYPIK------ 198 (279)
T ss_pred -CCcceEEEecCcHHHHhhhCCC--CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEE----EEEeec------
Confidence 3568999999998877664322 355678999997 5678888777766554 345443 232211
Q ss_pred CcchHHHHHHHHHhhhCC-----CeEEEEeecC
Q 022597 258 DAKTISIRNFNKNLMEDE-----RVSISMVPIG 285 (294)
Q Consensus 258 ~~~~~~ir~f~~~l~~~~-----~~~~~~lp~g 285 (294)
....++.|.+.+..-. ..+..+.|..
T Consensus 199 --~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~ 229 (279)
T COG2961 199 --DRRQIRRFLRALEALGIRKILQIELAVRPDS 229 (279)
T ss_pred --chHHHHHHHHHHhhcCccceeeeEEEecCCC
Confidence 1234677777665432 2344555653
No 349
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=89.27 E-value=1.1 Score=36.96 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=28.7
Q ss_pred EEccccccccccccccccCCCc--HHHHHHHH-HCCCCcEEEEEeCChHHHHHHHHH--HHHh
Q 022597 125 EVGVYTVCVSSYSTSILSLFSG--YSSLAIAL-VLPESGCLVACERDARSLEVAKKY--YERA 182 (294)
Q Consensus 125 EiG~g~~~~~~~~~~~~~~~aG--~~sl~la~-~~~~~~~v~~id~~~~~~~~A~~~--~~~~ 182 (294)
|||++. | .....+.. ...++++|+++|.+|..++..+++ +..+
T Consensus 1 DvGA~~---------------G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANI---------------GFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TT---------------S--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCC---------------ChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 799999 9 66666643 355579999999999999999888 5544
No 350
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.21 E-value=3 Score=41.48 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=59.1
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+++|+-+|+|.+ |......++.. +++|+.+|.++...+.|++ .|. +.. +..+
T Consensus 200 l~GktVvViG~G~I--------------G~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e 253 (413)
T cd00401 200 IAGKVAVVAGYGDV--------------GKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE 253 (413)
T ss_pred CCCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH
Confidence 45789999999764 76666666665 4689999999988776654 343 111 1112
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHH-HhcccCCeEEEEec
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELL-LQLIRVGGIIVIDN 244 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~-~~lLkpgG~ivid~ 244 (294)
. + ...|+||.-.+. ...+... .+.+++||+++.-.
T Consensus 254 ~---v------~~aDVVI~atG~---~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 254 A---V------KEGDIFVTTTGN---KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred H---H------cCCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEeC
Confidence 1 1 357988875543 3345544 78999999997543
No 351
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=89.14 E-value=2.8 Score=40.81 Aligned_cols=104 Identities=25% Similarity=0.302 Sum_probs=67.3
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-c
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-L 194 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-d 194 (294)
+..++..|.-+|||.+ |.+++.-|.... ..+++++|++++.++.|++ .|-.+-+.-... |
T Consensus 182 ~v~~G~tvaV~GlGgV--------------GlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~ 242 (366)
T COG1062 182 KVEPGDTVAVFGLGGV--------------GLAAIQGAKAAG-AGRIIAVDINPEKLELAKK----FGATHFVNPKEVDD 242 (366)
T ss_pred cCCCCCeEEEEeccHh--------------HHHHHHHHHHcC-CceEEEEeCCHHHHHHHHh----cCCceeecchhhhh
Confidence 3446678999999865 777777666654 6899999999999887765 454332222211 3
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
..+.+..+- .+..|.+|.-.+. .+.++..+..++++|..++-.+
T Consensus 243 vv~~i~~~T----~gG~d~~~e~~G~---~~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 243 VVEAIVELT----DGGADYAFECVGN---VEVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred HHHHHHHhc----CCCCCEEEEccCC---HHHHHHHHHHHhcCCeEEEEec
Confidence 444444442 3478888765542 2356666777777888877554
No 352
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=88.61 E-value=7.8 Score=38.08 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEe-CChHHHHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACE-RDARSLEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id-~~~~~~~~A~~~~~~ 181 (294)
-.|....+=..++.+.++..++=..+|. +..+..+...++++.+|+..+ +-....+..++.+.+
T Consensus 53 gnPt~~~le~~la~Le~g~~a~~~~SGm---------------aAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~ 117 (386)
T PF01053_consen 53 GNPTVRALEQRLAALEGGEDALLFSSGM---------------AAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPR 117 (386)
T ss_dssp C-HHHHHHHHHHHHHHT-SEEEEESSHH---------------HHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHH
T ss_pred ccccHHHHHHHHHHhhcccceeeccchH---------------HHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcc
Confidence 4677777777888888888899988876 666556666677677777665 455667777788888
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCC--eEEEEeccc
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVG--GIIVIDNVL 246 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpg--G~ivid~vl 246 (294)
.|+. +++...+-.+.++... ...-++||+..+ +......++.+.++.+.- -.+++||.+
T Consensus 118 ~gv~--v~~~d~~d~~~l~~~l----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 118 FGVE--VTFVDPTDLEALEAAL----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp TTSE--EEEESTTSHHHHHHHH----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred cCcE--EEEeCchhHHHHHhhc----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence 7764 5665443334444433 458899998765 222344455555555554 477888876
No 353
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=88.52 E-value=4.2 Score=35.15 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=54.2
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
-|+|+|-|. |-.==.+-..+| +-+|+.+|.--....-. ..+.-.++.||+.+.++.
T Consensus 31 ~VlElGLGN---------------GRTydHLRe~~p-~R~I~vfDR~l~~hp~~--------~P~~~~~ilGdi~~tl~~ 86 (160)
T PF12692_consen 31 PVLELGLGN---------------GRTYDHLREIFP-DRRIYVFDRALACHPSS--------TPPEEDLILGDIRETLPA 86 (160)
T ss_dssp -EEEE--TT---------------SHHHHHHHHH---SS-EEEEESS--S-GGG-----------GGGEEES-HHHHHHH
T ss_pred ceEEeccCC---------------CccHHHHHHhCC-CCeEEEEeeecccCCCC--------CCchHheeeccHHHHhHH
Confidence 699999999 987777878777 78999999854432111 122346889999999887
Q ss_pred HhhcCCCCceeEEEEcCC---ccc----hHHHHHHHHhcccCCeEEEEecccC
Q 022597 202 LILNGEASSYDFAFVDAE---KRM----YQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 202 l~~~~~~~~fD~vfiD~~---~~~----~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
+... ..+.-++-.|-+ ++. ....-..+.++|.|||++|-+.-+.
T Consensus 87 ~~~~--g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 87 LARF--GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHHH---S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred HHhc--CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 4322 345556666644 211 1222234457999999999876654
No 354
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=88.39 E-value=4.9 Score=38.25 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=62.9
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
....++++||-.|+|.+ |..++.++++.+ ...+++++.+++..+.+++ .|...-+.....+
T Consensus 182 ~~~~~g~~vlI~g~g~v--------------G~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~ 242 (365)
T cd08278 182 LKPRPGSSIAVFGAGAV--------------GLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEED 242 (365)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcC
Confidence 34456678888888653 777777888764 2369999999987766543 4442111111112
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
..+.+..+. ...+|+++--.+.. ..+..+.+.|+++|.++.-
T Consensus 243 ~~~~v~~~~----~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 243 LVAAIREIT----GGGVDYALDTTGVP---AVIEQAVDALAPRGTLALV 284 (365)
T ss_pred HHHHHHHHh----CCCCcEEEECCCCc---HHHHHHHHHhccCCEEEEe
Confidence 222233321 34699887654322 3567788899999998863
No 355
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.08 E-value=5.3 Score=37.38 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=62.6
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKH 192 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~ 192 (294)
.....+++++|-.|+|.+ |..++.+++.. +.+ +++++.+++..+.+++ .|...-+....
T Consensus 157 ~~~~~~g~~vlI~g~g~v--------------G~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~ 216 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPI--------------GLLTAAVAKAF--GATKVVVTDIDPSRLEFAKE----LGATHTVNVRT 216 (343)
T ss_pred hcCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCcEEecccc
Confidence 344556778877787653 77778888876 455 8889888887766644 24432222221
Q ss_pred cch---hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 193 GLA---ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 193 gda---~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+. .+.+.... ....+|+||--.+.. ..+...++.|+++|.++.-
T Consensus 217 ~~~~~~~~~~~~~~---~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 217 EDTPESAEKIAELL---GGKGPDVVIECTGAE---SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred ccchhHHHHHHHHh---CCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 121 12222221 134599888654421 2566778899999998853
No 356
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.05 E-value=3.1 Score=41.09 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=49.8
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh--
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-- 198 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~-- 198 (294)
++||-||||.| |....+.+.... +.+|+..|.+++.++.+..... .+++...-|+.+.
T Consensus 2 ~~ilviGaG~V--------------g~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~a 61 (389)
T COG1748 2 MKILVIGAGGV--------------GSVVAHKLAQNG-DGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDA 61 (389)
T ss_pred CcEEEECCchh--------------HHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHH
Confidence 47999999765 655555544433 4899999999998876655432 1677777777653
Q ss_pred HHHHhhcCCCCceeEEEEcCC
Q 022597 199 LKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~ 219 (294)
+.+++ ..+|+|+.-.+
T Consensus 62 l~~li-----~~~d~VIn~~p 77 (389)
T COG1748 62 LVALI-----KDFDLVINAAP 77 (389)
T ss_pred HHHHH-----hcCCEEEEeCC
Confidence 44453 45698876554
No 357
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.04 E-value=3.2 Score=35.16 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=53.4
Q ss_pred cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHH------hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC
Q 022597 146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYER------AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 218 (294)
Q Consensus 146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~------~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~ 218 (294)
|..+.++|..+.. +-+|+....+++.++..++.-.. ..+..++.+ ..|..+.+ ...|+|++-.
T Consensus 8 G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---------~~ad~Iiiav 77 (157)
T PF01210_consen 8 GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---------EDADIIIIAV 77 (157)
T ss_dssp SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---------TT-SEEEE-S
T ss_pred CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---------CcccEEEecc
Confidence 4444555554432 45899999999887766553221 111234544 33443332 4579999998
Q ss_pred CccchHHHHHHHHhcccCCeEEEE
Q 022597 219 EKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 219 ~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+.....++++.+.+.++++-.++.
T Consensus 78 Ps~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 78 PSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred cHHHHHHHHHHHhhccCCCCEEEE
Confidence 888889999999999988877764
No 358
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.03 E-value=3.8 Score=35.70 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=47.6
Q ss_pred CcEEEEEeCChHHHHHHHHHHHHh-------C-CC--------CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--c
Q 022597 159 SGCLVACERDARSLEVAKKYYERA-------G-VS--------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--K 220 (294)
Q Consensus 159 ~~~v~~id~~~~~~~~A~~~~~~~-------g-l~--------~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~ 220 (294)
+.+|+.+|.+++.++.+++.+++. | +. .++++. .|..+. ...|+|+.-.. .
T Consensus 22 G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~----------~~adlViEai~E~l 90 (180)
T PF02737_consen 22 GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA----------VDADLVIEAIPEDL 90 (180)
T ss_dssp TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG----------CTESEEEE-S-SSH
T ss_pred CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH----------hhhheehhhccccH
Confidence 689999999999999888887751 1 11 234432 233221 37899987654 3
Q ss_pred cchHHHHHHHHhcccCCeEEEEe
Q 022597 221 RMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 221 ~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+--.++|..+.+.+.|+.+|.-.
T Consensus 91 ~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 91 ELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp HHHHHHHHHHHCCS-TTSEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceEEec
Confidence 33578999999999888877653
No 359
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.02 E-value=3.3 Score=38.42 Aligned_cols=98 Identities=21% Similarity=0.283 Sum_probs=62.3
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC----Cc----EEEEEeCChHHHHHHHHHHHHhCCCCcEEE
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE----SG----CLVACERDARSLEVAKKYYERAGVSHKVKI 190 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~----~~----~v~~id~~~~~~~~A~~~~~~~gl~~~v~~ 190 (294)
+.+|++|+.... |.++..+.+.+-. .+ ++++||+.+- +.+. .|.-
T Consensus 41 gv~rvVDLCAAP---------------GSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~-GV~q 93 (294)
T KOG1099|consen 41 GVKRVVDLCAAP---------------GSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIE-GVIQ 93 (294)
T ss_pred hhhHHhhhhcCC---------------CcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccC-ceEE
Confidence 345899999999 9998888887622 22 3999999763 2233 3666
Q ss_pred EEcchhh--hHHHHhhcCCCCceeEEEEcCCc-----cchHHHH---------HHHHhcccCCeEEEEe
Q 022597 191 KHGLAAD--SLKALILNGEASSYDFAFVDAEK-----RMYQEYF---------ELLLQLIRVGGIIVID 243 (294)
Q Consensus 191 ~~gda~~--~l~~l~~~~~~~~fD~vfiD~~~-----~~~~~~~---------~~~~~lLkpgG~ivid 243 (294)
+++|... .++..+..-..++.|+|+.|+.+ .+..+|+ ......|+|||.+|.-
T Consensus 94 lq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 94 LQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred eecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 6777643 22333332235799999999652 2223322 2223679999999864
No 360
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.02 E-value=0.66 Score=45.64 Aligned_cols=98 Identities=22% Similarity=0.259 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~ 181 (294)
.+.....-+.++++....+.+|+|+.|.. |..|..++..++..+++.++|.+++..+..++.++.
T Consensus 196 ilqd~asclpA~ll~p~~g~~v~d~caap---------------g~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ 260 (413)
T KOG2360|consen 196 ILQDKASCLPAHLLDPRPGSRVIDTCAAP---------------GNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKI 260 (413)
T ss_pred EEechhhcchhhhcCCCCCCceeeecccc---------------ccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHH
Confidence 34444445566677777778999999999 999999999998889999999999999999999999
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
+|.+ .++...+|.... ... . .-.....|++|+.
T Consensus 261 ag~~-~~~~~~~df~~t-~~~-~--~~~~v~~iL~Dps 293 (413)
T KOG2360|consen 261 AGVS-IVESVEGDFLNT-ATP-E--KFRDVTYILVDPS 293 (413)
T ss_pred cCCC-ccccccccccCC-CCc-c--cccceeEEEeCCC
Confidence 9987 477778887653 110 0 0234455677754
No 361
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=87.99 E-value=2.4 Score=32.24 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=51.3
Q ss_pred cHHHHHHHHHCCC-C---cEEE-EEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc
Q 022597 146 GYSSLAIALVLPE-S---GCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK 220 (294)
Q Consensus 146 G~~sl~la~~~~~-~---~~v~-~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~ 220 (294)
|..+..+++.+-. + .+|+ .++.+++..+...+ +.+ +.+...+..+.+ +..|+||+-.++
T Consensus 8 G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~---~~~----~~~~~~~~~~~~---------~~advvilav~p 71 (96)
T PF03807_consen 8 GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAK---EYG----VQATADDNEEAA---------QEADVVILAVKP 71 (96)
T ss_dssp SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHH---HCT----TEEESEEHHHHH---------HHTSEEEE-S-G
T ss_pred CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHH---hhc----cccccCChHHhh---------ccCCEEEEEECH
Confidence 6677777666532 3 5888 55999987655443 333 344443555554 347999999999
Q ss_pred cchHHHHHHHHhcccCCeEEE
Q 022597 221 RMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 221 ~~~~~~~~~~~~lLkpgG~iv 241 (294)
....+.++.+ ..+.++.+++
T Consensus 72 ~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 72 QQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp GGHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHHHH-hhccCCCEEE
Confidence 9999999988 6666766654
No 362
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=87.98 E-value=0.82 Score=44.16 Aligned_cols=74 Identities=22% Similarity=0.225 Sum_probs=51.3
Q ss_pred cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH-HHHhhcCCCCceeEEEEcCC
Q 022597 146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL-KALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l-~~l~~~~~~~~fD~vfiD~~ 219 (294)
|.+.++-+.... .+-..+++|++...++.|++++.++++++++++++....+.+ ........+..|||+..+++
T Consensus 112 gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 112 GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPP 187 (419)
T ss_pred chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCc
Confidence 555566554432 346788999999999999999999999999999988664432 22111111345888877654
No 363
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.71 E-value=1.8 Score=40.19 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=56.8
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh-CCCCcEEEEEcchhh-h
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD-S 198 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~-gl~~~v~~~~gda~~-~ 198 (294)
+.||||+|.-| ++=..... .+-+.+|.|+|+..++.|+.++..+ +++..++++...-.+ +
T Consensus 81 ~~LDIGvGAnC-----------------IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~i 143 (292)
T COG3129 81 RILDIGVGANC-----------------IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAI 143 (292)
T ss_pred EEEeeccCccc-----------------ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccc
Confidence 89999996522 22222222 2578999999999999999999988 888889888765444 3
Q ss_pred HHHHhhcCCCCceeEEEEcCC
Q 022597 199 LKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~ 219 (294)
++..+. -.+.||+...+++
T Consensus 144 f~giig--~nE~yd~tlCNPP 162 (292)
T COG3129 144 FNGIIG--KNERYDATLCNPP 162 (292)
T ss_pred cccccc--ccceeeeEecCCC
Confidence 333321 2578999998876
No 364
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=87.70 E-value=6.5 Score=36.66 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=62.3
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cc
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GL 194 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gd 194 (294)
....+++|+=.|+|.+ |.....+++.. +.++++++.+++..+.++ ..|..+-+.... .+
T Consensus 162 ~~~~~~~vlV~g~g~v--------------g~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~ 221 (345)
T cd08260 162 RVKPGEWVAVHGCGGV--------------GLSAVMIASAL--GARVIAVDIDDDKLELAR----ELGAVATVNASEVED 221 (345)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCeEEEEeCCHHHHHHHH----HhCCCEEEccccchh
Confidence 3445678888897542 77777777776 578999999988776663 346532222222 22
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
....+..+ . .+.+|++|--.+. ...+..+.+.|+++|.++.
T Consensus 222 ~~~~~~~~---~-~~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 222 VAAAVRDL---T-GGGAHVSVDALGI---PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred HHHHHHHH---h-CCCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEE
Confidence 22223222 1 2379988854332 2456677889999998875
No 365
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.69 E-value=6.3 Score=36.39 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=51.8
Q ss_pred cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHH-------HhCC-C--------CcEEEEEcchhhhHHHHhhcCCC
Q 022597 146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYE-------RAGV-S--------HKVKIKHGLAADSLKALILNGEA 208 (294)
Q Consensus 146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~-------~~gl-~--------~~v~~~~gda~~~l~~l~~~~~~ 208 (294)
|..+..++..+. .+..|+.+|.+++.++.+++.++ +.|. . .++++. .|.. . .
T Consensus 12 G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~----~------~ 80 (282)
T PRK05808 12 GTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLD----D------L 80 (282)
T ss_pred CHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH----H------h
Confidence 555555555442 24589999999999876664332 2231 1 123322 2221 1 2
Q ss_pred CceeEEEEcCCccc--hHHHHHHHHhcccCCeEEE
Q 022597 209 SSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 209 ~~fD~vfiD~~~~~--~~~~~~~~~~lLkpgG~iv 241 (294)
...|+||+-.+... -.++|+.+.+.++|+.+++
T Consensus 81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 81 KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 56799998875332 3688999989999987773
No 366
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=87.66 E-value=7.4 Score=36.29 Aligned_cols=102 Identities=25% Similarity=0.351 Sum_probs=61.7
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...++.++|=.|+|.+ |..++.+++..+ ..++++++.+++..+.++ ..|...-+.....+.
T Consensus 163 ~~~~g~~vlI~g~g~~--------------g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~ 223 (345)
T cd08286 163 KVKPGDTVAIVGAGPV--------------GLAALLTAQLYS-PSKIIMVDLDDNRLEVAK----KLGATHTVNSAKGDA 223 (345)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCCceeccccccH
Confidence 3445667777787542 666666777653 267888999887766555 345543333333333
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
...+..+. ....+|.+|--.+. ...++.+.+.|+++|.++.
T Consensus 224 ~~~i~~~~---~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 224 IEQVLELT---DGRGVDVVIEAVGI---PATFELCQELVAPGGHIAN 264 (345)
T ss_pred HHHHHHHh---CCCCCCEEEECCCC---HHHHHHHHHhccCCcEEEE
Confidence 22232221 13469988744331 2356778899999999885
No 367
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=87.10 E-value=5.4 Score=37.82 Aligned_cols=99 Identities=24% Similarity=0.360 Sum_probs=59.5
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
.++++||-.|+|.+ |..+..+++.. +.+ +++++.+++..+.++ ..|...-+.....+..
T Consensus 186 ~~g~~VlI~g~g~v--------------G~~~~~lak~~--G~~~vi~~~~s~~~~~~~~----~~g~~~v~~~~~~~~~ 245 (367)
T cd08263 186 RPGETVAVIGVGGV--------------GSSAIQLAKAF--GASPIIAVDVRDEKLAKAK----ELGATHTVNAAKEDAV 245 (367)
T ss_pred CCCCEEEEECCcHH--------------HHHHHHHHHHc--CCCeEEEEeCCHHHHHHHH----HhCCceEecCCcccHH
Confidence 45667877777642 77777778776 355 888998888766553 3454321222122222
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+.+.... ....+|+|+--.+.. ...+.+++.|+++|.++.
T Consensus 246 ~~l~~~~---~~~~~d~vld~vg~~---~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 246 AAIREIT---GGRGVDVVVEALGKP---ETFKLALDVVRDGGRAVV 285 (367)
T ss_pred HHHHHHh---CCCCCCEEEEeCCCH---HHHHHHHHHHhcCCEEEE
Confidence 2232221 235699988543322 356778899999999875
No 368
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.99 E-value=13 Score=32.51 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=50.0
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.+++++-.|++ |..+..+++.+ ..+.+|++++.+++..+.+.+..... .++.++.+|..+
T Consensus 4 ~~~~vlItGa~----------------g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 64 (238)
T PRK05786 4 KGKKVAIIGVS----------------EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSS 64 (238)
T ss_pred CCcEEEEECCC----------------chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCC
Confidence 35689999885 55666666655 34679999999988766554444432 257778887654
Q ss_pred h--HHHHhhcC--CCCceeEEEEcCC
Q 022597 198 S--LKALILNG--EASSYDFAFVDAE 219 (294)
Q Consensus 198 ~--l~~l~~~~--~~~~fD~vfiD~~ 219 (294)
. +..+.+.. ..+.+|.++..+.
T Consensus 65 ~~~~~~~~~~~~~~~~~id~ii~~ag 90 (238)
T PRK05786 65 TESARNVIEKAAKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 2 22211110 1246788877654
No 369
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=86.90 E-value=19 Score=36.45 Aligned_cols=95 Identities=11% Similarity=0.134 Sum_probs=54.4
Q ss_pred cHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHH---HHhCCC--------CcEEEEEcchhhhHHHHhhcCCCCce
Q 022597 146 GYSSLAIALVLPE---SGCLVACERDARSLEVAKKYY---ERAGVS--------HKVKIKHGLAADSLKALILNGEASSY 211 (294)
Q Consensus 146 G~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~---~~~gl~--------~~v~~~~gda~~~l~~l~~~~~~~~f 211 (294)
||.++.++..+.. +.+|+++|.+++.++..++-. .+.|+. .+.++. .|..+. -...
T Consensus 10 GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~---------i~~a 79 (473)
T PLN02353 10 GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKH---------VAEA 79 (473)
T ss_pred CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHH---------HhcC
Confidence 6677766665542 467999999999877644321 000110 112221 111111 1346
Q ss_pred eEEEEcCC--c---------c----chHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597 212 DFAFVDAE--K---------R----MYQEYFELLLQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 212 D~vfiD~~--~---------~----~~~~~~~~~~~lLkpgG~ivid~vl~~g~ 250 (294)
|++|+-.+ . . ......+.+.+.|++|-++++......|.
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence 77776432 1 1 24556666678899999999888877775
No 370
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=86.77 E-value=0.74 Score=43.58 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597 105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 184 (294)
Q Consensus 105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl 184 (294)
|.+.+++...- .+..++|+|||. |-.. . ..+.+.++++|++...+..+++ .|
T Consensus 34 p~v~qfl~~~~---~gsv~~d~gCGn---------------gky~----~-~~p~~~~ig~D~c~~l~~~ak~----~~- 85 (293)
T KOG1331|consen 34 PMVRQFLDSQP---TGSVGLDVGCGN---------------GKYL----G-VNPLCLIIGCDLCTGLLGGAKR----SG- 85 (293)
T ss_pred HHHHHHHhccC---CcceeeecccCC---------------cccC----c-CCCcceeeecchhhhhcccccc----CC-
Confidence 44444444432 356899999998 5211 1 1146789999999987766553 12
Q ss_pred CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc----CC--ccchHHHHHHHHhcccCCeEEEEe
Q 022597 185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVD----AE--KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD----~~--~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
...+..+|+..... ...+||.++.- +. .......++.+.+.|+|||-+.+-
T Consensus 86 --~~~~~~ad~l~~p~------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 86 --GDNVCRADALKLPF------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred --CceeehhhhhcCCC------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 22455566654422 25789988533 22 344577889999999999997764
No 371
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=86.74 E-value=8.5 Score=36.61 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=61.9
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG- 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g- 193 (294)
..+.++++||=.|+|.+ |..+..+++..+ ...+++++.+++..+.++ +.|...-+.....
T Consensus 179 ~~~~~g~~vlI~g~g~v--------------G~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~ 239 (365)
T cd05279 179 AKVTPGSTCAVFGLGGV--------------GLSVIMGCKAAG-ASRIIAVDINKDKFEKAK----QLGATECINPRDQD 239 (365)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HhCCCeeccccccc
Confidence 34456678888888653 666667777663 235888898888776664 3455332222222
Q ss_pred -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhccc-CCeEEEEe
Q 022597 194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIR-VGGIIVID 243 (294)
Q Consensus 194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLk-pgG~ivid 243 (294)
+..+.+..+. .+.+|.++--.+. ...+....+.|+ ++|.++.-
T Consensus 240 ~~~~~~l~~~~----~~~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 240 KPIVEVLTEMT----DGGVDYAFEVIGS---ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred chHHHHHHHHh----CCCCcEEEECCCC---HHHHHHHHHHhccCCCEEEEE
Confidence 2222222221 2469998854432 345667788899 99998864
No 372
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=86.62 E-value=7.7 Score=35.34 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=58.5
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
....+++++-.|.+.++ |.....++... +.+++.++.+++..+.++. .+....+.. .+
T Consensus 163 ~~~~~~~vlI~g~~~~i-------------G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~--~~- 220 (342)
T cd08266 163 RLRPGETVLVHGAGSGV-------------GSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDY--RK- 220 (342)
T ss_pred CCCCCCEEEEECCCchH-------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEec--CC-
Confidence 34456788888886522 55555555554 5789999998887665533 343221221 11
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+....+........+|.++...+. ..++.+.+.++++|.++.-
T Consensus 221 ~~~~~~~~~~~~~~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 221 EDFVREVRELTGKRGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred hHHHHHHHHHhCCCCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 1222222211123468998866543 3456667888999988753
No 373
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.59 E-value=4.7 Score=37.50 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=56.7
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh--CCC------------
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA--GVS------------ 185 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~--gl~------------ 185 (294)
++|.=||+| ..+..++..+. .+..|+.+|.+++.++.+++.+++. ++.
T Consensus 4 ~~I~ViGaG-----------------~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~ 66 (291)
T PRK06035 4 KVIGVVGSG-----------------VMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDE 66 (291)
T ss_pred cEEEEECcc-----------------HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHH
Confidence 367788884 45555554442 2568999999999998877655432 111
Q ss_pred -----CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc--hHHHHHHHHhcccCCeEEE
Q 022597 186 -----HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 186 -----~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~--~~~~~~~~~~lLkpgG~iv 241 (294)
.+++.. .+. .. -...|+||.-.+... ..++|+.+.+.++++.+++
T Consensus 67 ~~~~~~~i~~~-~~~----~~------~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 67 AKAIMARIRTS-TSY----ES------LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HHHHHhCcEee-CCH----HH------hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 112221 111 11 145799988765332 5778888888888887654
No 374
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=86.53 E-value=6.7 Score=36.58 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=61.7
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
....+++||=.|+|.+ |.....++++. +.+++.++.+++..+.++ +.|..+-+.....+.
T Consensus 160 ~~~~~~~vlV~g~g~i--------------G~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~ 219 (333)
T cd08296 160 GAKPGDLVAVQGIGGL--------------GHLAVQYAAKM--GFRTVAISRGSDKADLAR----KLGAHHYIDTSKEDV 219 (333)
T ss_pred CCCCCCEEEEECCcHH--------------HHHHHHHHHHC--CCeEEEEeCChHHHHHHH----HcCCcEEecCCCccH
Confidence 4556678998997653 77777778776 468999999988776664 345432122211122
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+.+..+ ..+|.++...+ ....++.+.+.|+++|.++.-
T Consensus 220 ~~~~~~~------~~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 220 AEALQEL------GGAKLILATAP---NAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred HHHHHhc------CCCCEEEECCC---chHHHHHHHHHcccCCEEEEE
Confidence 2222221 35898874322 234677788999999998853
No 375
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=86.41 E-value=7.8 Score=38.56 Aligned_cols=91 Identities=16% Similarity=0.254 Sum_probs=55.5
Q ss_pred cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH-----------HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEE
Q 022597 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----------ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 214 (294)
Q Consensus 146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~-----------~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~v 214 (294)
|+.++.++..+..+-.|+++|++++.++..++-. ...| +..+. .+. +. ....|++
T Consensus 15 GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g---~l~~t-~~~-~~---------~~~advv 80 (425)
T PRK15182 15 GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR---YLKFT-SEI-EK---------IKECNFY 80 (425)
T ss_pred CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC---CeeEE-eCH-HH---------HcCCCEE
Confidence 8888888888766679999999999877654111 0111 11221 111 11 1457888
Q ss_pred EEcCCc-------cchHHH---HHHHHhcccCCeEEEEecccCCCc
Q 022597 215 FVDAEK-------RMYQEY---FELLLQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 215 fiD~~~-------~~~~~~---~~~~~~lLkpgG~ivid~vl~~g~ 250 (294)
|+-.+. .+.... .+.+.+.|++|.++|.......|.
T Consensus 81 ii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgt 126 (425)
T PRK15182 81 IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGC 126 (425)
T ss_pred EEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence 875442 222222 345668899999888877766664
No 376
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.31 E-value=3.9 Score=37.88 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=49.0
Q ss_pred cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchH
Q 022597 146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ 224 (294)
Q Consensus 146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~ 224 (294)
|..+..++..+. .+.+|+++|.+++..+.+.+ .|.. .....+. .. ....|+||+-.+.....
T Consensus 9 G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~----~g~~---~~~~~~~----~~------~~~aDlVilavp~~~~~ 71 (279)
T PRK07417 9 GLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE----RGLV---DEASTDL----SL------LKDCDLVILALPIGLLL 71 (279)
T ss_pred cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CCCc---ccccCCH----hH------hcCCCEEEEcCCHHHHH
Confidence 555556665553 24689999999987766543 2321 1111111 11 24679999988877777
Q ss_pred HHHHHHHhcccCCeEE
Q 022597 225 EYFELLLQLIRVGGII 240 (294)
Q Consensus 225 ~~~~~~~~lLkpgG~i 240 (294)
+.++.+.+.++++.++
T Consensus 72 ~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 72 PPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHhCCCCcEE
Confidence 7888888888776433
No 377
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=86.12 E-value=5.9 Score=38.28 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=59.6
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHH-HHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~-~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
++++|+-.|+|.+ |..++.+|++. +.++++++.+++. .+. .++.|...-+. ..+. +
T Consensus 178 ~g~~VlV~G~G~v--------------G~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~----a~~lGa~~~i~--~~~~-~ 234 (375)
T PLN02178 178 SGKRLGVNGLGGL--------------GHIAVKIGKAF--GLRVTVISRSSEKEREA----IDRLGADSFLV--TTDS-Q 234 (375)
T ss_pred CCCEEEEEcccHH--------------HHHHHHHHHHc--CCeEEEEeCChHHhHHH----HHhCCCcEEEc--CcCH-H
Confidence 5678888898764 77777888876 4689999887653 333 34456532111 1121 2
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+... .+.+|++|--.+. ...++.+.+.+++||.++.-.+
T Consensus 235 ~v~~~-----~~~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 235 KMKEA-----VGTMDFIIDTVSA---EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred HHHHh-----hCCCcEEEECCCc---HHHHHHHHHhhcCCCEEEEEcc
Confidence 22222 1358988865442 2356677889999999986443
No 378
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=85.94 E-value=11 Score=35.55 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=55.0
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC--CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~--~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
..+++|+-+|+|. .+..++..+. ....|+.++.+++..+. ..++.|. .+. +.
T Consensus 176 l~~~~V~ViGaG~-----------------iG~~~a~~L~~~g~~~V~v~~r~~~ra~~---la~~~g~----~~~--~~ 229 (311)
T cd05213 176 LKGKKVLVIGAGE-----------------MGELAAKHLAAKGVAEITIANRTYERAEE---LAKELGG----NAV--PL 229 (311)
T ss_pred ccCCEEEEECcHH-----------------HHHHHHHHHHHcCCCEEEEEeCCHHHHHH---HHHHcCC----eEE--eH
Confidence 3578999999954 4444444332 23579999999875432 2233332 222 12
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.+ +... -..+|+||.-.+.+.+...++.+......++.+++|-..
T Consensus 230 ~~-~~~~-----l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 230 DE-LLEL-----LNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred HH-HHHH-----HhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 22 2222 145899998876555544455554444446788887654
No 379
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.87 E-value=9.2 Score=37.57 Aligned_cols=95 Identities=13% Similarity=0.204 Sum_probs=54.2
Q ss_pred cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH---hCCC-----CcEEEEEc-chhhhHHHHhhcCCCCceeEEEE
Q 022597 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGVS-----HKVKIKHG-LAADSLKALILNGEASSYDFAFV 216 (294)
Q Consensus 146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~---~gl~-----~~v~~~~g-da~~~l~~l~~~~~~~~fD~vfi 216 (294)
|+.++.++..+..+-.|+++|++++.++.+++.... .++. .+.++... +..+. ....|+||+
T Consensus 9 GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~---------~~~ad~vii 79 (388)
T PRK15057 9 GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA---------YRDADYVII 79 (388)
T ss_pred CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh---------hcCCCEEEE
Confidence 677776666554457899999999998877652110 0000 11222211 11111 245688887
Q ss_pred cCCcc-----------chHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597 217 DAEKR-----------MYQEYFELLLQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 217 D~~~~-----------~~~~~~~~~~~lLkpgG~ivid~vl~~g~ 250 (294)
..+.+ ......+.+.+ +++|.++|.......|.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgt 123 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGF 123 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCch
Confidence 65421 22344555666 68888888877766664
No 380
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=85.55 E-value=12 Score=34.94 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=59.8
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
..++++++-.|+|.+ |..+..+++.. +.+ |++++.+++..+.++ +.|...-+.....+.
T Consensus 159 ~~~g~~vlI~~~g~v--------------g~~a~~la~~~--G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~ 218 (340)
T TIGR00692 159 PISGKSVLVTGAGPI--------------GLMAIAVAKAS--GAYPVIVSDPNEYRLELAK----KMGATYVVNPFKEDV 218 (340)
T ss_pred CCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHH----HhCCcEEEcccccCH
Confidence 345667766777542 77777777776 455 888888877665544 345432222222233
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+.+..+. ....+|++|-..+. ...++.+.+.|+++|.++.-
T Consensus 219 ~~~l~~~~---~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 219 VKEVADLT---DGEGVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred HHHHHHhc---CCCCCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence 33333321 13568998865432 24567778899999988764
No 381
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.51 E-value=14 Score=33.35 Aligned_cols=99 Identities=21% Similarity=0.311 Sum_probs=61.3
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
....+++||-.|+...+ |..+..+++.. +.+|+++..+++..+.++ ..|... +-....+.
T Consensus 139 ~~~~g~~vlV~ga~g~~-------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~-~~~~~~~~ 198 (320)
T cd08243 139 GLQPGDTLLIRGGTSSV-------------GLAALKLAKAL--GATVTATTRSPERAALLK----ELGADE-VVIDDGAI 198 (320)
T ss_pred CCCCCCEEEEEcCCChH-------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCcE-EEecCccH
Confidence 34556788888874322 77777777776 578999999888765553 355532 21111222
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+.+..+ ...+|+++-.... ..++.+.+.|+++|.++.-
T Consensus 199 ~~~i~~~-----~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 199 AEQLRAA-----PGGFDKVLELVGT----ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred HHHHHHh-----CCCceEEEECCCh----HHHHHHHHHhccCCEEEEE
Confidence 2222222 3569998854432 3567778999999998753
No 382
>PRK10083 putative oxidoreductase; Provisional
Probab=85.38 E-value=9.7 Score=35.33 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=58.8
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
.....+++|+=.|+|.+ |..++.++++.-....+++++.+++..+.+++ .|...-+.....+
T Consensus 156 ~~~~~g~~vlI~g~g~v--------------G~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~ 217 (339)
T PRK10083 156 TGPTEQDVALIYGAGPV--------------GLTIVQVLKGVYNVKAVIVADRIDERLALAKE----SGADWVINNAQEP 217 (339)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCcEEecCcccc
Confidence 34556778988997643 66666677753113358889998887766553 4553222222212
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.. +.+... ...+|.+|--.+. ...+...++.|+++|.++.
T Consensus 218 ~~---~~~~~~--g~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 218 LG---EALEEK--GIKPTLIIDAACH---PSILEEAVTLASPAARIVL 257 (339)
T ss_pred HH---HHHhcC--CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEE
Confidence 22 222111 1235666643332 2356677889999999886
No 383
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.37 E-value=9.6 Score=35.36 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=57.1
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh--------CCC------
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA--------GVS------ 185 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~--------gl~------ 185 (294)
++|-=||+|+ .+..++..+. .+.+|+.+|.+++.++.+++.+++. ++.
T Consensus 4 ~kIaViGaG~-----------------mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (287)
T PRK08293 4 KNVTVAGAGV-----------------LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAE 66 (287)
T ss_pred cEEEEECCCH-----------------HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHH
Confidence 3677788854 4444444432 2568999999999988887664321 111
Q ss_pred ---CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEE
Q 022597 186 ---HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 186 ---~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~iv 241 (294)
.++++. .|..+. ....|+||.-.+. .....+|+.+.+.++++.+|+
T Consensus 67 ~~~~~i~~~-~d~~~a---------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 67 AALNRITLT-TDLAEA---------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred HHHcCeEEe-CCHHHH---------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 233332 222221 2457999887652 245677888888887776553
No 384
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=85.15 E-value=13 Score=35.30 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=60.4
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+++++-.|+|.+ |..++.+++.. +.+++.++.+++..+.+. +..|... .+...+. +
T Consensus 179 ~~g~~vlV~G~G~v--------------G~~av~~Ak~~--G~~vi~~~~~~~~~~~~~---~~~Ga~~--~i~~~~~-~ 236 (357)
T PLN02514 179 QSGLRGGILGLGGV--------------GHMGVKIAKAM--GHHVTVISSSDKKREEAL---EHLGADD--YLVSSDA-A 236 (357)
T ss_pred CCCCeEEEEcccHH--------------HHHHHHHHHHC--CCeEEEEeCCHHHHHHHH---HhcCCcE--EecCCCh-H
Confidence 35678888888764 77777788876 467888888876544332 3456532 1211121 2
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+... ...+|.+|--.+. ...++.+.+.|++||.++.-..
T Consensus 237 ~~~~~-----~~~~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 237 EMQEA-----ADSLDYIIDTVPV---FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred HHHHh-----cCCCcEEEECCCc---hHHHHHHHHHhccCCEEEEECC
Confidence 22222 2358988865542 2456677889999999887543
No 385
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=84.90 E-value=1.6 Score=40.11 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=41.8
Q ss_pred cHHHHHHHH--HC-CCCcEEEEEeCChHHHHHHHHHHHH----hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC
Q 022597 146 GYSSLAIAL--VL-PESGCLVACERDARSLEVAKKYYER----AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 218 (294)
Q Consensus 146 G~~sl~la~--~~-~~~~~v~~id~~~~~~~~A~~~~~~----~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~ 218 (294)
|-.|..++. .+ ..+.+|+.+|-||..--. ++.++ ..+.+++.+...+-...+....+..+...||+||+|.
T Consensus 14 GKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~--~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDl 91 (231)
T PF07015_consen 14 GKTTAAMALASELAARGARVALIDADPNQPLA--KWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDL 91 (231)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH--HHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeC
Confidence 555555444 33 247899999999876322 22222 2345667777665544554443322234699999995
Q ss_pred C
Q 022597 219 E 219 (294)
Q Consensus 219 ~ 219 (294)
.
T Consensus 92 e 92 (231)
T PF07015_consen 92 E 92 (231)
T ss_pred C
Confidence 3
No 386
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.69 E-value=6.9 Score=36.32 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=51.4
Q ss_pred cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh---CCC-------------CcEEEEEcchhhhHHHHhhcCCC
Q 022597 146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA---GVS-------------HKVKIKHGLAADSLKALILNGEA 208 (294)
Q Consensus 146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~---gl~-------------~~v~~~~gda~~~l~~l~~~~~~ 208 (294)
|..+..++..+. .+..|+.+|.+++.++.+.+..... +.. .++++. .+..+. .
T Consensus 10 G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~---------~ 79 (288)
T PRK09260 10 GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA---------V 79 (288)
T ss_pred cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh---------h
Confidence 555555555542 2568999999999998887654321 110 112222 122111 2
Q ss_pred CceeEEEEcCCccc--hHHHHHHHHhcccCCeEEEE
Q 022597 209 SSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 209 ~~fD~vfiD~~~~~--~~~~~~~~~~lLkpgG~ivi 242 (294)
...|+||.-.+... -..+|..+.+.++++.+++.
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 56799987665332 35677778888888876644
No 387
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.57 E-value=7.5 Score=35.25 Aligned_cols=96 Identities=19% Similarity=0.106 Sum_probs=59.7
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
...++++|-+|+|. .+.+.+..+.+..+|+.+|++|.+-.. +.+.|+|..+
T Consensus 42 ~~E~~~vli~G~Yl-----------------tG~~~a~~Ls~~~~vtv~Di~p~~r~~---------lp~~v~Fr~~--- 92 (254)
T COG4017 42 GEEFKEVLIFGVYL-----------------TGNYTAQMLSKADKVTVVDIHPFMRGF---------LPNNVKFRNL--- 92 (254)
T ss_pred ccCcceEEEEEeee-----------------hhHHHHHHhcccceEEEecCCHHHHhc---------CCCCccHhhh---
Confidence 34567999999985 456677777668999999999975322 3445666533
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEecccCCCcccCcc
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM 255 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~ 255 (294)
+.. ..+.+|+|+--.+-.. -+++ +..+.|+-.||=|-. |.+.|+.
T Consensus 93 --~~~-----~~G~~DlivDlTGlGG~~Pe~----L~~fnp~vfiVEdP~---gn~~D~~ 138 (254)
T COG4017 93 --LKF-----IRGEVDLIVDLTGLGGIEPEF----LAKFNPKVFIVEDPK---GNVFDVD 138 (254)
T ss_pred --cCC-----CCCceeEEEeccccCCCCHHH----HhccCCceEEEECCC---CCCCccc
Confidence 222 2688998864333222 2343 455677665554444 6666654
No 388
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=84.57 E-value=9.2 Score=34.33 Aligned_cols=95 Identities=22% Similarity=0.262 Sum_probs=59.5
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
....+++++|-.|+|.+ |..++.++++.. .+ |++++.+++..+.+++ .|..+.+.....
T Consensus 93 ~~~~~g~~vlI~g~g~v--------------g~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~ 152 (277)
T cd08255 93 AEPRLGERVAVVGLGLV--------------GLLAAQLAKAAG--AREVVGVDPDAARRELAEA----LGPADPVAADTA 152 (277)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC--CCcEEEECCCHHHHHHHHH----cCCCccccccch
Confidence 34556678888888653 777777888764 55 9999999988766554 341121111110
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.. . ....+|++|...+. ...++...+.|+++|.++.
T Consensus 153 ---~~---~----~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 153 ---DE---I----GGRGADVVIEASGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred ---hh---h----cCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence 00 1 13569988865432 2356777888999998874
No 389
>PRK08507 prephenate dehydrogenase; Validated
Probab=84.40 E-value=6.5 Score=36.23 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=49.5
Q ss_pred cHHHHHHHHHCCCC---cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc
Q 022597 146 GYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM 222 (294)
Q Consensus 146 G~~sl~la~~~~~~---~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~ 222 (294)
|..+..++..+... .+|+++|.+++..+.++ ..|..+. ..+. ..+ .+ .|+||+-.+...
T Consensus 9 G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g~~~~----~~~~----~~~-----~~-aD~Vilavp~~~ 70 (275)
T PRK08507 9 GLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELGLVDE----IVSF----EEL-----KK-CDVIFLAIPVDA 70 (275)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCCCCcc----cCCH----HHH-----hc-CCEEEEeCcHHH
Confidence 66666666655332 37999999998766543 3443211 1122 222 23 799999988888
Q ss_pred hHHHHHHHHhcccCCeEEE
Q 022597 223 YQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 223 ~~~~~~~~~~lLkpgG~iv 241 (294)
..+.++.+.+ +++|.+++
T Consensus 71 ~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 71 IIEILPKLLD-IKENTTII 88 (275)
T ss_pred HHHHHHHHhc-cCCCCEEE
Confidence 8888888888 88876444
No 390
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=84.10 E-value=2.1 Score=39.07 Aligned_cols=46 Identities=20% Similarity=0.057 Sum_probs=37.9
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCC-------cEEEEEeCChHHHHHHHHHHHH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPES-------GCLVACERDARSLEVAKKYYER 181 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~-------~~v~~id~~~~~~~~A~~~~~~ 181 (294)
-+|+|+|.|+ |..+..++..+... .+++.||.||...+.-++.++.
T Consensus 20 ~~ivE~GaG~---------------G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGR---------------GTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TT---------------SHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCc---------------hHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4899999999 99999999987632 5899999999998888888765
No 391
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=84.04 E-value=4.4 Score=40.17 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597 107 QAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178 (294)
Q Consensus 107 ~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~ 178 (294)
..+++..++...+...++|+|.|. |+.+-.+.... +-.|.+||-|....+.|++.
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~---------------G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQ---------------GHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCc---------------hHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 456777777788889999999999 99999988766 58999999997777666554
No 392
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=84.00 E-value=24 Score=34.35 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHHh
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERA 182 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~~ 182 (294)
+|....+=..++...++..++=+.+|+ +.....+...+.++.+|+..+..-. ....+....+..
T Consensus 49 nPt~~~lE~~lA~l~g~~~~~~~~sG~---------------~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~ 113 (377)
T TIGR01324 49 TLTHFALQDAMCELEGGAGCYLYPSGL---------------AAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRM 113 (377)
T ss_pred CccHHHHHHHHHHHhCCCcEEEECcHH---------------HHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhc
Confidence 354445555555556666777777655 4333333333556778877665443 333444455665
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccCCCcc
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGKV 251 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~~g~v 251 (294)
|+. ++++..+..+.++... ..+..+|++..+ .......++.+.++.+. |..+++|++...|..
T Consensus 114 gi~--v~~~d~~~~e~l~~~i----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~ 179 (377)
T TIGR01324 114 GVD--ITYYDPLIGEDIATLI----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLL 179 (377)
T ss_pred CcE--EEEECCCCHHHHHHhc----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 652 4443221113343332 345678887643 22334556666665554 667888998755543
No 393
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.96 E-value=11 Score=34.59 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=54.8
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCC---CcEEEEEcchhh
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAAD 197 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~---~~v~~~~gda~~ 197 (294)
+|.=+|+|. .+..++..+. .+..|+.++.+++.++..++ .|+. ...... ....+
T Consensus 2 ~I~IiG~G~-----------------~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~ 59 (304)
T PRK06522 2 KIAILGAGA-----------------IGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITVP-VLAAD 59 (304)
T ss_pred EEEEECCCH-----------------HHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceeec-ccCCC
Confidence 577788854 4444444332 24689999998877654433 2431 111100 00111
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.... ...+|+||+-.........++.+.+.+.++..++.
T Consensus 60 ~~~~------~~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 60 DPAE------LGPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ChhH------cCCCCEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 1111 26799999987766678888888888888766553
No 394
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.96 E-value=2.4 Score=34.93 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=51.5
Q ss_pred cHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCC----C-cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 146 GYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS----H-KVKIKHGLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 146 G~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~----~-~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
|..+..++..+ ..+..|+.+...+ ..+. +++.|+. . ...+............ .++||+||+-..
T Consensus 7 GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~D~viv~vK 76 (151)
T PF02558_consen 7 GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSAD-----AGPYDLVIVAVK 76 (151)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHH-----HSTESEEEE-SS
T ss_pred CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhc-----cCCCcEEEEEec
Confidence 55555555555 2367899999988 5543 3444431 0 1111111111111011 478999999886
Q ss_pred ccchHHHHHHHHhcccCCeEEEE
Q 022597 220 KRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 220 ~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.....+.++.+.+.+.++..+++
T Consensus 77 a~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 77 AYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp GGGHHHHHHHHCTGEETTEEEEE
T ss_pred ccchHHHHHHHhhccCCCcEEEE
Confidence 66778899999999999977664
No 395
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=83.81 E-value=0.61 Score=38.09 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=29.0
Q ss_pred ceeEEEEc---------CCccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597 210 SYDFAFVD---------AEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 210 ~fD~vfiD---------~~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~ 250 (294)
+||+|+.= .+......+|+.+..+|+|||++|+.-=-|...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY 50 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSY 50 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHH
Confidence 48888742 224567899999999999999999986655543
No 396
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=83.72 E-value=5.4 Score=34.58 Aligned_cols=95 Identities=22% Similarity=0.228 Sum_probs=55.6
Q ss_pred cHHHHHHHHHCCCCcEEEEEeCChH--HHHH---HHHHHHHhCCCCcEEEEEc-chhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 146 GYSSLAIALVLPESGCLVACERDAR--SLEV---AKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 146 G~~sl~la~~~~~~~~v~~id~~~~--~~~~---A~~~~~~~gl~~~v~~~~g-da~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
=..++++++..+.+..+++.-.+.+ ..+. +.++++... ...+++.++ |+.+.-+... ....+||.|+-+.+
T Consensus 8 fSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-~~g~~V~~~VDat~l~~~~~--~~~~~FDrIiFNFP 84 (166)
T PF10354_consen 8 FSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-ELGVTVLHGVDATKLHKHFR--LKNQRFDRIIFNFP 84 (166)
T ss_pred hHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-hcCCccccCCCCCccccccc--ccCCcCCEEEEeCC
Confidence 5567777777664556665555443 3322 334555442 223455443 5544332221 12578999976644
Q ss_pred cc----------------chHHHHHHHHhcccCCeEEEEe
Q 022597 220 KR----------------MYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 220 ~~----------------~~~~~~~~~~~lLkpgG~ivid 243 (294)
.. -...+|+.+.++|+++|.|.+.
T Consensus 85 H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 85 HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 1467888889999999999875
No 397
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=83.60 E-value=7.1 Score=36.24 Aligned_cols=95 Identities=21% Similarity=0.285 Sum_probs=57.9
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
++++||-.|+|.+ |..++.+++.. +. ++++++.+++..+.+++ .|..+ ++......
T Consensus 165 ~~~~VLI~g~g~v--------------G~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~----~g~~~---vi~~~~~~ 221 (339)
T cd08232 165 AGKRVLVTGAGPI--------------GALVVAAARRA--GAAEIVATDLADAPLAVARA----MGADE---TVNLARDP 221 (339)
T ss_pred CCCEEEEECCCHH--------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCCE---EEcCCchh
Confidence 6678888887543 66666777766 44 78999998887765443 34422 22111111
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+..+.. ..+.+|+++--.+. ...++.+++.|+++|.++.
T Consensus 222 -~~~~~~--~~~~vd~vld~~g~---~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 222 -LAAYAA--DKGDFDVVFEASGA---PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred -hhhhhc--cCCCccEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 222211 12459998865442 2356778899999999885
No 398
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=83.59 E-value=17 Score=33.42 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=61.9
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCC-cEEEEEeCChHHHHHHHHHHHHh---CCC---------
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERA---GVS--------- 185 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~-~~v~~id~~~~~~~~A~~~~~~~---gl~--------- 185 (294)
++-++-|-+||. ||..--+..-.+.. ..|++.|+|++.++.|++|+... |++
T Consensus 51 ~p~tLyDPCCG~---------------gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~ 115 (246)
T PF11599_consen 51 GPYTLYDPCCGS---------------GYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL 115 (246)
T ss_dssp S-EEEEETT-TT---------------SHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred CCeeeeccCCCc---------------cHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence 344899999999 98776666654432 58999999999999998886521 111
Q ss_pred -----------------------------CcEEEEEcchhhh--HHHHhhcCCCCceeEEEEcCC------cc------c
Q 022597 186 -----------------------------HKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE------KR------M 222 (294)
Q Consensus 186 -----------------------------~~v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~------~~------~ 222 (294)
....+...|..+. +..+. . ....|+|+-|.+ |. .
T Consensus 116 ~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~--~~~~diViTDlPYG~~t~W~g~~~~~p 192 (246)
T PF11599_consen 116 YEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-A--GFTPDIVITDLPYGEMTSWQGEGSGGP 192 (246)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-T--T---SEEEEE--CCCSSSTTS---HHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc-c--CCCCCEEEecCCCcccccccCCCCCCc
Confidence 1244555555442 11121 1 233588888854 11 2
Q ss_pred hHHHHHHHHhcccCCeEEEEec
Q 022597 223 YQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 223 ~~~~~~~~~~lLkpgG~ivid~ 244 (294)
...+|+.+.+.|.+++++++.+
T Consensus 193 ~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 193 VAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHCCS-TT-EEEEEE
T ss_pred HHHHHHHHHhhCCCCcEEEEec
Confidence 5678888999997778877743
No 399
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=83.42 E-value=27 Score=34.79 Aligned_cols=126 Identities=12% Similarity=0.091 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHH-HHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSL-EVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~-~~A~~~~~~ 181 (294)
..|....+=..++...+++..+-.++|+ +...+.+...++++.+|+..+..-... ....+.+++
T Consensus 67 ~~pt~~~le~~la~l~g~~~~v~fsSG~---------------~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~ 131 (437)
T PRK05613 67 TNPTVEALENRIASLEGGVHAVAFASGQ---------------AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNR 131 (437)
T ss_pred cChHHHHHHHHHHHHhCCCeEEEeCCHH---------------HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHh
Confidence 4566666666777777888888888876 444444443356677887765433332 344556666
Q ss_pred hCCCCcEEEEE--cchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccCCCc
Q 022597 182 AGVSHKVKIKH--GLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGK 250 (294)
Q Consensus 182 ~gl~~~v~~~~--gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~~g~ 250 (294)
.|+. ++++. .|. +.++..+ .....+|++... .......++.+.++.+. |-.+++|+..-.|.
T Consensus 132 ~Gi~--v~~vd~~~d~-e~l~~~l----~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~ 198 (437)
T PRK05613 132 LGIE--VTFVENPDDP-ESWQAAV----QPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAA 198 (437)
T ss_pred cCeE--EEEECCCCCH-HHHHHhC----CccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCcccc
Confidence 6653 55553 122 2233322 234567776432 11112234444444444 55677788754443
No 400
>PRK09028 cystathionine beta-lyase; Provisional
Probab=83.36 E-value=25 Score=34.65 Aligned_cols=124 Identities=14% Similarity=0.166 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCCh-HHHHHHHHHHHHhC
Q 022597 105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAG 183 (294)
Q Consensus 105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~-~~~~~A~~~~~~~g 183 (294)
|....+=..++.+.++..++=..+|+ ......+...++++.+|+..+..- .....+...+++.|
T Consensus 61 pt~~~Le~~iA~le~~~~~~~~~sG~---------------~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~G 125 (394)
T PRK09028 61 PTHFAFQAAIVELEGGAGTALYPSGA---------------AAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFG 125 (394)
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHH---------------HHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcc
Confidence 33334444444445555666555654 333333333356677888877653 44455555666666
Q ss_pred CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccCCC
Q 022597 184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHG 249 (294)
Q Consensus 184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~~g 249 (294)
+. ++++..+..+.+++.. ..+-.+|++..+ +......++.+.++.+. |..+++|++...+
T Consensus 126 i~--v~~v~~~~~e~l~~~l----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 126 IE--TTYYDPMIGEGIRELI----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred eE--EEEECCCCHHHHHHhc----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 53 4444322223344432 244678887654 22334556666666665 5677788887544
No 401
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.31 E-value=6.7 Score=36.96 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=53.3
Q ss_pred cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHH---HH---HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC
Q 022597 146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKKY---YE---RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 218 (294)
Q Consensus 146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~---~~---~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~ 218 (294)
|..+..++..+.. +..|+.++.+++..+..++. .+ ...+...+++. .|..+. + .+..|+||+-.
T Consensus 9 Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---~-----~~~~Dliiiav 79 (326)
T PRK14620 9 GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV---L-----SDNATCIILAV 79 (326)
T ss_pred CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH---H-----hCCCCEEEEEe
Confidence 5555555555432 45899999998877655542 11 01111223332 222221 1 25789999988
Q ss_pred CccchHHHHHHHHh-cccCCeEEEE
Q 022597 219 EKRMYQEYFELLLQ-LIRVGGIIVI 242 (294)
Q Consensus 219 ~~~~~~~~~~~~~~-lLkpgG~ivi 242 (294)
......+.++.+.+ .+.++..++.
T Consensus 80 ks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 80 PTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 77778888999888 8888875554
No 402
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=83.31 E-value=39 Score=33.12 Aligned_cols=126 Identities=18% Similarity=0.189 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeC-ChHHHHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~-~~~~~~~A~~~~~~ 181 (294)
-+|....+-..++...+...++-+++|+ ......+...+.++.+|+..+. .........+.++.
T Consensus 68 ~~p~~~~le~~lA~l~g~~~al~~~sG~---------------~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~ 132 (403)
T PRK07810 68 GNPTVSMFEERLRLIEGAEACFATASGM---------------SAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPR 132 (403)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECChH---------------HHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHH
Confidence 3556677777788888888899888866 4444444333555667776653 22344455556666
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccCCC
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHG 249 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~~g 249 (294)
.|. .+.++..+-.+.++..+ ...-++|++..+ +......++.+.++.+. |-.+++|+..-.+
T Consensus 133 ~G~--~v~~vd~~d~~~l~~ai----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 133 WGV--ETVFVDGEDLSQWEEAL----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred cCc--EEEEECCCCHHHHHHhc----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 665 35555333223333332 234578886533 11111224444444443 5567788875433
No 403
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=83.26 E-value=2.1 Score=36.69 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=33.9
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK 177 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~ 177 (294)
.++.+|+=+|.|.+ |..+..++..++ .+++..|.+++..+..+.
T Consensus 18 ~~p~~vvv~G~G~v--------------g~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 18 VPPAKVVVTGAGRV--------------GQGAAEIAKGLG--AEVVVPDERPERLRQLES 61 (168)
T ss_dssp E-T-EEEEESTSHH--------------HHHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEECCCHH--------------HHHHHHHHhHCC--CEEEeccCCHHHHHhhhc
Confidence 45669999999985 999999999984 899999999987665443
No 404
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=83.18 E-value=16 Score=36.41 Aligned_cols=97 Identities=11% Similarity=0.256 Sum_probs=60.8
Q ss_pred cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcC------C---CCceeEEE
Q 022597 146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------E---ASSYDFAF 215 (294)
Q Consensus 146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~------~---~~~fD~vf 215 (294)
||.++-+|.+... +.+|+|+|+++..++...+ | +..+..-+..+.++.....| + ....|+++
T Consensus 18 GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 18 GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 7777777666543 5799999999987754321 2 23444444444344433322 1 12567666
Q ss_pred EcCC----------ccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597 216 VDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 216 iD~~----------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~ 250 (294)
+-.+ -.......+.+.+.|++|-.+++....++|.
T Consensus 90 I~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 90 ICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred EEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 5433 1113455666778999999999999999986
No 405
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.09 E-value=11 Score=35.28 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=55.2
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh-CC--C--------CcE
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-GV--S--------HKV 188 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~-gl--~--------~~v 188 (294)
++|-=||+| ..+..++..+. .+.+|+.+|.+++.++.+++.++.. |. . .++
T Consensus 5 ~~I~vIGaG-----------------~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 67 (311)
T PRK06130 5 QNLAIIGAG-----------------TMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRI 67 (311)
T ss_pred cEEEEECCC-----------------HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhce
Confidence 467778885 44554444432 2568999999999988887754321 21 0 112
Q ss_pred EEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc--chHHHHHHHHhcccCCeEEE
Q 022597 189 KIKHGLAADSLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~--~~~~~~~~~~~lLkpgG~iv 241 (294)
++. .+..+. ....|+||+-.+.. ....+++.+.+.++++.+++
T Consensus 68 ~~~-~~~~~~---------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 68 RME-AGLAAA---------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred EEe-CCHHHH---------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 221 122111 24679999876533 35677888777776665443
No 406
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=82.98 E-value=12 Score=34.43 Aligned_cols=101 Identities=16% Similarity=0.230 Sum_probs=61.0
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKH 192 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~ 192 (294)
..+..++++||-+|+|. + |...+.++++. +.+ ++.++.+++..+.++ +.|.. .++.
T Consensus 154 ~~~~~~g~~vlI~g~g~-v-------------g~~~~~la~~~--G~~~v~~~~~~~~~~~~~~----~~g~~---~~~~ 210 (334)
T cd08234 154 LLGIKPGDSVLVFGAGP-I-------------GLLLAQLLKLN--GASRVTVAEPNEEKLELAK----KLGAT---ETVD 210 (334)
T ss_pred hcCCCCCCEEEEECCCH-H-------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHH----HhCCe---EEec
Confidence 34455667898888753 2 66777777775 455 888999988776653 33543 2222
Q ss_pred cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.+..+.... .. .....+|++|--.+. ...++.+.+.|+++|.++.
T Consensus 211 ~~~~~~~~~-~~-~~~~~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 211 PSREDPEAQ-KE-DNPYGFDVVIEATGV---PKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred CCCCCHHHH-HH-hcCCCCcEEEECCCC---hHHHHHHHHHHhcCCEEEE
Confidence 221111111 11 114579999854432 3566677888999999875
No 407
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=82.87 E-value=18 Score=27.29 Aligned_cols=75 Identities=25% Similarity=0.300 Sum_probs=51.1
Q ss_pred EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeE
Q 022597 162 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGI 239 (294)
Q Consensus 162 v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ 239 (294)
|..+|-++...+..++.++..|+. .+. ...+..+.+..+. ...+|+|++|.. .....++++.+...-....+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~-~v~-~~~~~~~~~~~~~----~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~i 74 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE-EVT-TASSGEEALELLK----KHPPDLIIIDLELPDGDGLELLEQIRQINPSIPI 74 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE-EEE-EESSHHHHHHHHH----HSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC-EEE-EECCHHHHHHHhc----ccCceEEEEEeeeccccccccccccccccccccE
Confidence 456899999999999999977763 233 3456666665553 366999999964 34566778777655533344
Q ss_pred EEE
Q 022597 240 IVI 242 (294)
Q Consensus 240 ivi 242 (294)
+++
T Consensus 75 i~~ 77 (112)
T PF00072_consen 75 IVV 77 (112)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 408
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=82.80 E-value=15 Score=33.92 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=60.6
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
...+++||=.|+|. + |...+.+++... ..++++++.+++..+.+ ++.|...-+.. ..+..
T Consensus 165 ~~~~~~vlI~g~~~-v-------------g~~~~~~a~~~g-~~~v~~~~~~~~~~~~~----~~~g~~~~~~~-~~~~~ 224 (340)
T cd05284 165 LDPGSTVVVIGVGG-L-------------GHIAVQILRALT-PATVIAVDRSEEALKLA----ERLGADHVLNA-SDDVV 224 (340)
T ss_pred CCCCCEEEEEcCcH-H-------------HHHHHHHHHHhC-CCcEEEEeCCHHHHHHH----HHhCCcEEEcC-CccHH
Confidence 34567888889765 2 666667777653 26899999888776544 34555321111 11122
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+.+..+. ....+|+++--.+. ...++.+++.|+++|.++.-
T Consensus 225 ~~i~~~~---~~~~~dvvld~~g~---~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 225 EEVRELT---GGRGADAVIDFVGS---DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred HHHHHHh---CCCCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 2222221 13469988864432 24567778889999998853
No 409
>PRK08064 cystathionine beta-lyase; Provisional
Probab=82.74 E-value=41 Score=32.72 Aligned_cols=123 Identities=12% Similarity=0.192 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~ 181 (294)
..|...++-..++...+....+-+++|+ +...+.+. .+.++.+|+..+..-. ......+.++.
T Consensus 52 ~~p~~~~le~~lA~l~g~~~~v~~~sG~---------------~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~ 115 (390)
T PRK08064 52 GNPTREALEDIIAELEGGTKGFAFASGM---------------AAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSR 115 (390)
T ss_pred CChhHHHHHHHHHHHhCCCCeEEECCHH---------------HHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHH
Confidence 3566666666677766666666667755 43333332 4555677777665332 34444555666
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccC-CeEEEEecccC
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRV-GGIIVIDNVLW 247 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkp-gG~ivid~vl~ 247 (294)
.|. ++.++..+-.+.+.... ...-.+|++..+. ......++.+.++.+. |..+++|+..-
T Consensus 116 ~G~--~v~~v~~~d~~~l~~~l----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~ 178 (390)
T PRK08064 116 FGI--EHTFVDMTNLEEVAQNI----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFL 178 (390)
T ss_pred cCC--EEEEECCCCHHHHHHhc----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCC
Confidence 665 34444332223333322 2345788876441 1111223333333333 66788888743
No 410
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=82.67 E-value=14 Score=35.54 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=61.4
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc--
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-- 193 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-- 193 (294)
+...+++||=.|+|.+ |..++.+++..+ ..++++++.+++..+.++ +.|...-+.....
T Consensus 200 ~~~~g~~VlV~g~g~v--------------G~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~ 260 (384)
T cd08265 200 GFRPGAYVVVYGAGPI--------------GLAAIALAKAAG-ASKVIAFEISEERRNLAK----EMGADYVFNPTKMRD 260 (384)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEEEccccccc
Confidence 3445678877788653 777777777764 227999999888654444 4565322222111
Q ss_pred -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+..+.+..+ .....+|+|+--.+ .....++.+.+.|+++|.++.-
T Consensus 261 ~~~~~~v~~~---~~g~gvDvvld~~g--~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 261 CLSGEKVMEV---TKGWGADIQVEAAG--APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred ccHHHHHHHh---cCCCCCCEEEECCC--CcHHHHHHHHHHHHcCCEEEEE
Confidence 222222222 12346898774332 2235577788899999998853
No 411
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.66 E-value=13 Score=36.41 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=59.9
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
.++++=+|+ |..+..+++.+.. +..++.+|.+++.++.+++.. ..+.++.||+.+.
T Consensus 231 ~~~iiIiG~-----------------G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~ 287 (453)
T PRK09496 231 VKRVMIVGG-----------------GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQ 287 (453)
T ss_pred CCEEEEECC-----------------CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCH
Confidence 468999898 6677777777743 678999999999876655432 2367889998643
Q ss_pred HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597 199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv 241 (294)
..+... .-..+|.|++-.+.....-....+.+.+.+.-+++
T Consensus 288 -~~L~~~-~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 288 -ELLEEE-GIDEADAFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred -HHHHhc-CCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 222221 14678988876543322222233334455543433
No 412
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=82.65 E-value=4.6 Score=40.89 Aligned_cols=97 Identities=10% Similarity=0.111 Sum_probs=62.3
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 201 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~ 201 (294)
+++.+|||. +-+..-..-..--.|+.+|.|+-.++.+..... --....++...|.....-
T Consensus 51 ~~l~lGCGN-----------------S~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~f- 110 (482)
T KOG2352|consen 51 KILQLGCGN-----------------SELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVF- 110 (482)
T ss_pred eeEeecCCC-----------------CHHHHHHHhcCCCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccC-
Confidence 799999965 444444333223579999999988876655443 123347777777754322
Q ss_pred HhhcCCCCceeEEEE---------cCC----ccchHHHHHHHHhcccCCeEEEEe
Q 022597 202 LILNGEASSYDFAFV---------DAE----KRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 202 l~~~~~~~~fD~vfi---------D~~----~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+.++||+|+. |.. .......+..+.++|++||..+.=
T Consensus 111 -----edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 111 -----EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred -----CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 2577887753 221 123456788889999999986543
No 413
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=82.64 E-value=15 Score=34.14 Aligned_cols=103 Identities=23% Similarity=0.334 Sum_probs=61.2
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKH 192 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~ 192 (294)
.+...++.+||-.|+|.+ |...+.+++.. +.+ +++++.+++..+.++ ..|...-+....
T Consensus 154 ~~~~~~~~~vlI~g~g~~--------------g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~ 213 (343)
T cd08236 154 LAGITLGDTVVVIGAGTI--------------GLLAIQWLKIL--GAKRVIAVDIDDEKLAVAR----ELGADDTINPKE 213 (343)
T ss_pred hcCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEEcCCHHHHHHHH----HcCCCEEecCcc
Confidence 344456678888887653 77777788876 354 899988887665543 345432122211
Q ss_pred cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.. .+.+.... ....+|.+|--.+. ...+..+.+.|+++|.++.-
T Consensus 214 ~~-~~~~~~~~---~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 214 ED-VEKVRELT---EGRGADLVIEAAGS---PATIEQALALARPGGKVVLV 257 (343)
T ss_pred cc-HHHHHHHh---CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 11 22222221 13459988854322 24567788999999998753
No 414
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=82.60 E-value=14 Score=33.97 Aligned_cols=93 Identities=19% Similarity=0.277 Sum_probs=59.8
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...++++||=.|+|.+ |...+.+++.. +.++++++.+++..+.+++ .|....+..
T Consensus 152 ~~~~g~~vlV~g~g~v--------------g~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~~~~----- 206 (319)
T cd08242 152 PITPGDKVAVLGDGKL--------------GLLIAQVLALT--GPDVVLVGRHSEKLALARR----LGVETVLPD----- 206 (319)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----cCCcEEeCc-----
Confidence 3455678888887643 66666677766 5679999999988777665 454321111
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+. . ....+|.+|--.+. ...++.+.+.|+++|.++.-
T Consensus 207 ~~~---~----~~~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 207 EAE---S----EGGGFDVVVEATGS---PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ccc---c----cCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEE
Confidence 111 1 13569988754432 23566778889999999863
No 415
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=82.55 E-value=6.4 Score=37.56 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHcCCCC-----CCCCCHHH--HHHHHHHH-hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHH
Q 022597 83 PEILRQLREETAGMRGS-----QMQVSPDQ--AQLLAMLV-QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIAL 154 (294)
Q Consensus 83 ~~~L~~~~~~~~~~~~~-----~~~v~~~~--~~lL~~l~-~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~ 154 (294)
.++|++.++-++..+.. |-.+.|++ .+...+.- .-+.++.|+-+|-- -..+++++.
T Consensus 108 ~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvGDD----------------DLtsia~aL 171 (354)
T COG1568 108 KDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVGDD----------------DLTSIALAL 171 (354)
T ss_pred HHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEcCc----------------hhhHHHHHh
Confidence 46777777776654422 22344443 11111111 12456789999953 344555554
Q ss_pred HCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHh
Q 022597 155 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQ 232 (294)
Q Consensus 155 ~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~ 232 (294)
..- ..+|..+|+++..+....+..++.|+.+ ++.+.-|.+.-+++-. ..+||..+-|++. .....|+..-..
T Consensus 172 t~m-pk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~----~~kFDvfiTDPpeTi~alk~FlgRGI~ 245 (354)
T COG1568 172 TGM-PKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDL----KRKFDVFITDPPETIKALKLFLGRGIA 245 (354)
T ss_pred cCC-CceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHH----HhhCCeeecCchhhHHHHHHHHhccHH
Confidence 322 3689999999999999999999999974 7777777776555422 4789999988862 223444444445
Q ss_pred cccCC---eEEEE
Q 022597 233 LIRVG---GIIVI 242 (294)
Q Consensus 233 lLkpg---G~ivi 242 (294)
.|+.- |++-+
T Consensus 246 tLkg~~~aGyfgi 258 (354)
T COG1568 246 TLKGEGCAGYFGI 258 (354)
T ss_pred HhcCCCccceEee
Confidence 56655 55543
No 416
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=82.55 E-value=39 Score=33.75 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEE-eCChHHHHHHHHHHHHhC
Q 022597 105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVAC-ERDARSLEVAKKYYERAG 183 (294)
Q Consensus 105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~i-d~~~~~~~~A~~~~~~~g 183 (294)
|..-.+-..+..+.++..++-.-+|. ...+..+..-+|.+.++++. |.--....+.++...+.|
T Consensus 77 Pt~~~le~~iaal~ga~~~l~fsSGm---------------aA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~g 141 (409)
T KOG0053|consen 77 PTRDVLESGIAALEGAAHALLFSSGM---------------AAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFG 141 (409)
T ss_pred CchHHHHHHHHHHhCCceEEEecccH---------------HHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhC
Confidence 33444445556666777788777766 55666666666777777766 456667888888888877
Q ss_pred CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecccCCCccc
Q 022597 184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA 252 (294)
Q Consensus 184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~ 252 (294)
.. ++++..+-.+-+...+ .+.-++||+-.+ ..+.+.+-+.+. ++|-.+|+||.+-.+...
T Consensus 142 ie--~~~vd~~~~~~~~~~i----~~~t~~V~~ESPsNPll~v~DI~~l~~la~---~~g~~vvVDnTf~~p~~~ 207 (409)
T KOG0053|consen 142 GE--GDFVDVDDLKKILKAI----KENTKAVFLESPSNPLLKVPDIEKLARLAH---KYGFLVVVDNTFGSPYNQ 207 (409)
T ss_pred ce--eeeechhhHHHHHHhh----ccCceEEEEECCCCCccccccHHHHHHHHh---hCCCEEEEeCCcCccccc
Confidence 64 5666544433333332 346899998755 223344333333 677778889887555333
No 417
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=82.50 E-value=6.1 Score=36.47 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=27.6
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 209 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 209 ~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
..+|+||+-.......+.++.+.+.+.++.+++.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 6799999988766778888888888888876653
No 418
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=82.33 E-value=37 Score=33.83 Aligned_cols=95 Identities=16% Similarity=0.241 Sum_probs=55.3
Q ss_pred cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHH------------HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee
Q 022597 146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 212 (294)
Q Consensus 146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~------------~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD 212 (294)
||.++..+..+.+ +-.|+++|++++-++..++ .++++....|+++. .|+.+.+ ..-|
T Consensus 9 GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~---------~~ad 78 (414)
T COG1004 9 GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV---------KDAD 78 (414)
T ss_pred chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH---------hcCC
Confidence 6665554444432 4689999999998876543 33333333445553 3333322 3467
Q ss_pred EEEEcCC---ccc-------hHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597 213 FAFVDAE---KRM-------YQEYFELLLQLIRVGGIIVIDNVLWHGK 250 (294)
Q Consensus 213 ~vfiD~~---~~~-------~~~~~~~~~~lLkpgG~ivid~vl~~g~ 250 (294)
++|+-.+ +++ .....+.+.+.++..-++|+-.....|.
T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt 126 (414)
T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGT 126 (414)
T ss_pred EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCc
Confidence 7887543 111 2344555567777778888877766664
No 419
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=81.94 E-value=19 Score=33.35 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=62.9
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
....+.+||=.|++.++ |..+..++++. +.+++.++.+++..+.++ ..|...-+.....+.
T Consensus 162 ~~~~~~~vlV~g~~~~v-------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~ 222 (341)
T cd08297 162 GLKPGDWVVISGAGGGL-------------GHLGVQYAKAM--GLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDD 222 (341)
T ss_pred CCCCCCEEEEECCCchH-------------HHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccH
Confidence 45566789888887533 77777788876 478999999987765543 345332112211122
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+.+..+ .....+|.++.+.... .....+.+.++++|.++.-
T Consensus 223 ~~~~~~~---~~~~~vd~vl~~~~~~---~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 223 VEAVKEL---TGGGGAHAVVVTAVSA---AAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred HHHHHHH---hcCCCCCEEEEcCCch---HHHHHHHHHhhcCCEEEEe
Confidence 2222222 1235699988644322 3456677888999999854
No 420
>PRK06940 short chain dehydrogenase; Provisional
Probab=81.80 E-value=21 Score=32.50 Aligned_cols=72 Identities=21% Similarity=0.136 Sum_probs=45.9
Q ss_pred cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh--HHHHhhc-CCCCceeEEEEcCC
Q 022597 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN-GEASSYDFAFVDAE 219 (294)
Q Consensus 146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~--l~~l~~~-~~~~~fD~vfiD~~ 219 (294)
|..+..+++.+..+.+|+.++.+++..+.+.+.++..| .++.++..|..+. +..+... ...+.+|.++..++
T Consensus 11 ~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG 85 (275)
T PRK06940 11 GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAG 85 (275)
T ss_pred ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 45777777777667899999999887766555555433 3577777776542 2222211 01357899987765
No 421
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=81.65 E-value=20 Score=28.00 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=43.4
Q ss_pred CCCCcEEE-EEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcc
Q 022597 156 LPESGCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI 234 (294)
Q Consensus 156 ~~~~~~v~-~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lL 234 (294)
..++.+++ .+|.+++..+.+ .++.|.. ...|..+.+. ...+|+|++..+...-.++ +...|
T Consensus 22 ~~~~~~v~~v~d~~~~~~~~~---~~~~~~~-----~~~~~~~ll~-------~~~~D~V~I~tp~~~h~~~---~~~~l 83 (120)
T PF01408_consen 22 SSPDFEVVAVCDPDPERAEAF---AEKYGIP-----VYTDLEELLA-------DEDVDAVIIATPPSSHAEI---AKKAL 83 (120)
T ss_dssp TTTTEEEEEEECSSHHHHHHH---HHHTTSE-----EESSHHHHHH-------HTTESEEEEESSGGGHHHH---HHHHH
T ss_pred cCCCcEEEEEEeCCHHHHHHH---HHHhccc-----chhHHHHHHH-------hhcCCEEEEecCCcchHHH---HHHHH
Confidence 33466765 689998876554 4444443 4556655554 2579999998876544443 44555
Q ss_pred cCCeEEEEec
Q 022597 235 RVGGIIVIDN 244 (294)
Q Consensus 235 kpgG~ivid~ 244 (294)
+.|--++++-
T Consensus 84 ~~g~~v~~EK 93 (120)
T PF01408_consen 84 EAGKHVLVEK 93 (120)
T ss_dssp HTTSEEEEES
T ss_pred HcCCEEEEEc
Confidence 5666666653
No 422
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.63 E-value=4.9 Score=36.95 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=44.0
Q ss_pred CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCe
Q 022597 159 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGG 238 (294)
Q Consensus 159 ~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG 238 (294)
..+|+++|.+++..+.|+ +.|+.+.. ..+ .+ .+ ..+|+|++-.+.....++++.+.+.+++|+
T Consensus 11 ~~~v~g~d~~~~~~~~a~----~~g~~~~~---~~~-~~---~~------~~~DlvvlavP~~~~~~~l~~~~~~~~~~~ 73 (258)
T PF02153_consen 11 DVEVYGYDRDPETLEAAL----ELGIIDEA---STD-IE---AV------EDADLVVLAVPVSAIEDVLEEIAPYLKPGA 73 (258)
T ss_dssp TSEEEEE-SSHHHHHHHH----HTTSSSEE---ESH-HH---HG------GCCSEEEE-S-HHHHHHHHHHHHCGS-TTS
T ss_pred CeEEEEEeCCHHHHHHHH----HCCCeeec---cCC-Hh---Hh------cCCCEEEEcCCHHHHHHHHHHhhhhcCCCc
Confidence 579999999999876654 34654422 111 12 22 457999999998889999999999998886
Q ss_pred EEE
Q 022597 239 IIV 241 (294)
Q Consensus 239 ~iv 241 (294)
+++
T Consensus 74 iv~ 76 (258)
T PF02153_consen 74 IVT 76 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 423
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.50 E-value=22 Score=33.57 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=28.7
Q ss_pred cEEEEEeCChHHHH-HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 160 GCLVACERDARSLE-VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 160 ~~v~~id~~~~~~~-~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
.+++.+|.+++..+ .+..............+..+|..+ + ...|+||+-++
T Consensus 26 ~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~----l------~~aDiViita~ 76 (308)
T cd05292 26 SEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD----C------KGADVVVITAG 76 (308)
T ss_pred CEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH----h------CCCCEEEEccC
Confidence 58999999987664 333333222222334555455432 2 46799988654
No 424
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=81.28 E-value=34 Score=32.84 Aligned_cols=121 Identities=10% Similarity=0.212 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHHh
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERA 182 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~~ 182 (294)
.|....+-..+++..+....+=+++|+ ....+.+. .++++.+|+..+..-. ........++..
T Consensus 51 ~pt~~~le~~la~l~g~~~~~~~~sG~---------------~ai~~~~~-ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 114 (366)
T PRK08247 51 NPTRGVLEQAIADLEGGDQGFACSSGM---------------AAIQLVMS-LFRSGDELIVSSDLYGGTYRLFEEHWKKW 114 (366)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHH---------------HHHHHHHH-HhCCCCEEEEecCCcCcHHHHHHHHhhcc
Confidence 344555555666666666666666655 33333332 3455667777665332 334445556666
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEeccc
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVL 246 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl 246 (294)
|. ++.++..+-.+.++..+ ....++||+..+ +......++.+.++.+. |..+++|++.
T Consensus 115 G~--~v~~vd~~d~~~l~~~i----~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 115 NV--RFVYVNTASLKAIEQAI----TPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred Cc--eEEEECCCCHHHHHHhc----ccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 64 24444322223333322 235678887433 22233445555555544 6678888886
No 425
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.25 E-value=23 Score=32.93 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=52.6
Q ss_pred cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHH-------HhCCC---------CcEEEEEcchhhhHHHHhhcCCC
Q 022597 146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYE-------RAGVS---------HKVKIKHGLAADSLKALILNGEA 208 (294)
Q Consensus 146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~-------~~gl~---------~~v~~~~gda~~~l~~l~~~~~~ 208 (294)
|..+..++..+. .+..|+.+|.+++.++.+++.++ +.|.- .++++. .+. .. .
T Consensus 13 G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~----~~------~ 81 (295)
T PLN02545 13 GQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL----EE------L 81 (295)
T ss_pred CHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH----HH------h
Confidence 556666666542 25789999999999887665543 22211 112221 121 11 2
Q ss_pred CceeEEEEcCC--ccchHHHHHHHHhcccCCeEEE
Q 022597 209 SSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 209 ~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~iv 241 (294)
..-|+||.-.. ......+|+.+.+.++++.+++
T Consensus 82 ~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 82 RDADFIIEAIVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 45799998765 4446678888888888887665
No 426
>PRK05939 hypothetical protein; Provisional
Probab=81.09 E-value=38 Score=33.22 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHHh
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERA 182 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~~ 182 (294)
.|....+=..++...++..++-+.+|+ +.....+...++++.+|+..+.... ..... ..+++.
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~---------------~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~ 109 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGM---------------AAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGL 109 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHH---------------HHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhc
Confidence 466666666677777787888777765 4333333334566778877765432 22222 335555
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEeccc
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVL 246 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl 246 (294)
|. .+.++..+-.+.++... ..+-.+|++... .......++.+.++.+. |..+++|+..
T Consensus 110 G~--~v~~v~~~d~e~l~~~l----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 110 GV--EVTMVDATDVQNVAAAI----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CC--EEEEECCCCHHHHHHhC----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 65 34544322223344332 244567777543 22223445555555554 5567777765
No 427
>PLN02256 arogenate dehydrogenase
Probab=81.00 E-value=16 Score=34.74 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=50.8
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
.+|.=||+ |..+-+++..+.. +.+|+++|.++. .+ ..+..|. .. ..+..+.+
T Consensus 37 ~kI~IIG~-----------------G~mG~slA~~L~~~G~~V~~~d~~~~-~~----~a~~~gv----~~-~~~~~e~~ 89 (304)
T PLN02256 37 LKIGIVGF-----------------GNFGQFLAKTFVKQGHTVLATSRSDY-SD----IAAELGV----SF-FRDPDDFC 89 (304)
T ss_pred CEEEEEee-----------------CHHHHHHHHHHHhCCCEEEEEECccH-HH----HHHHcCC----ee-eCCHHHHh
Confidence 37888898 5555666665532 358999999863 22 2233343 22 22222221
Q ss_pred HHHhhcCCCCceeEEEEcCCccchHHHHHHH-HhcccCCeE
Q 022597 200 KALILNGEASSYDFAFVDAEKRMYQEYFELL-LQLIRVGGI 239 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~-~~lLkpgG~ 239 (294)
....|+||+-.+.....++++.+ .+.+++|.+
T Consensus 90 --------~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~i 122 (304)
T PLN02256 90 --------EEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTL 122 (304)
T ss_pred --------hCCCCEEEEecCHHHHHHHHHhhhhhccCCCCE
Confidence 13579999988776677777777 566777753
No 428
>PRK07671 cystathionine beta-lyase; Provisional
Probab=80.99 E-value=44 Score=32.37 Aligned_cols=123 Identities=11% Similarity=0.195 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~ 181 (294)
-.|....+-..++...+....+=+|+|+ +.....+. .+.++.+|+..+..-. ......+.++.
T Consensus 48 ~~p~~~~Le~~lA~l~g~~~~~~~~sG~---------------aai~~~~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~ 111 (377)
T PRK07671 48 GNPTRAALEELIAVLEGGHAGFAFGSGM---------------AAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNR 111 (377)
T ss_pred CChHHHHHHHHHHHHhCCCceEEeCCHH---------------HHHHHHHH-HhCCCCEEEECCCccchHHHHHHHHHhc
Confidence 3566666666677767666777678766 43333332 3455677877665433 34444455555
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhccc-CCeEEEEecccC
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIR-VGGIIVIDNVLW 247 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLk-pgG~ivid~vl~ 247 (294)
.|. ++.++..+-.+.+.+.+ .....+|++..+ +......++.+.++.+ .|..+++|+...
T Consensus 112 ~G~--~v~~v~~~d~~~l~~ai----~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 112 FGI--EHTFVDTSNLEEVEEAI----RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred CCe--EEEEECCCCHHHHHHhc----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 564 24444332223333322 234578886533 1111222333444333 367788888753
No 429
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=80.84 E-value=6.6 Score=36.99 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=51.6
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 200 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~ 200 (294)
.||+-+|.|+.= . ---++.-+-+-+|+++.++-.|+.+- +++.-..+.+|......
T Consensus 63 MrVlHlGAgSdk--G---------vaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc~t~~~ 118 (299)
T PF06460_consen 63 MRVLHLGAGSDK--G---------VAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDCRTYMP 118 (299)
T ss_dssp -EEEEES---TT--S---------B-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-GGGEEE
T ss_pred cEEEEecccccC--C---------cCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccccccCC
Confidence 499999998511 0 02356677888998998988888763 33444566788766532
Q ss_pred HHhhcCCCCceeEEEEcCC-------------ccchHH-HHHHHHhcccCCeEEEEe
Q 022597 201 ALILNGEASSYDFAFVDAE-------------KRMYQE-YFELLLQLIRVGGIIVID 243 (294)
Q Consensus 201 ~l~~~~~~~~fD~vfiD~~-------------~~~~~~-~~~~~~~lLkpgG~ivid 243 (294)
+.++|+||.|-. ++.+-. +...+...|+-||.+.+-
T Consensus 119 -------~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 119 -------PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp -------SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 589999999854 122323 334445789999999874
No 430
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=80.78 E-value=4.4 Score=39.88 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=48.6
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEE-EcCC----ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAF-VDAE----KRMYQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vf-iD~~----~~~~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
.++ +++++++++..+.+.... ++++|.+. +|+. ...+.+.++.+.+.++|||.+++-+..-
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLP----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCC----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 455 789999999999987652 68999864 5643 5667888899999999999999877743
No 431
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=80.77 E-value=18 Score=33.79 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=58.6
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
++++||-.|+|.+ |..+..++++. +. +|++++.+++..+.++ +.|.. .++...-.+
T Consensus 175 ~~~~vlI~g~g~v--------------g~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~----~~g~~---~~~~~~~~~ 231 (350)
T cd08240 175 ADEPVVIIGAGGL--------------GLMALALLKAL--GPANIIVVDIDEAKLEAAK----AAGAD---VVVNGSDPD 231 (350)
T ss_pred CCCEEEEECCcHH--------------HHHHHHHHHHc--CCCeEEEEeCCHHHHHHHH----HhCCc---EEecCCCcc
Confidence 5568888888653 66777777776 35 7889998888776653 34542 222221111
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
....+.... .+.+|++|-..+. ....+.+.+.|+++|.++.-
T Consensus 232 ~~~~~~~~~-~~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 232 AAKRIIKAA-GGGVDAVIDFVNN---SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred HHHHHHHHh-CCCCcEEEECCCC---HHHHHHHHHHhhcCCeEEEE
Confidence 112121111 2369998854432 23467778899999998853
No 432
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=80.76 E-value=15 Score=34.87 Aligned_cols=103 Identities=21% Similarity=0.354 Sum_probs=61.5
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
....++++||-.|+|.+ |..++.+++.. +. .|++++.+++..+.++ ..|..+-+.....
T Consensus 178 ~~~~~g~~vLI~g~g~v--------------G~a~i~lak~~--G~~~Vi~~~~~~~~~~~~~----~~g~~~vv~~~~~ 237 (363)
T cd08279 178 ARVRPGDTVAVIGCGGV--------------GLNAIQGARIA--GASRIIAVDPVPEKLELAR----RFGATHTVNASED 237 (363)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCcEEEEcCCHHHHHHHH----HhCCeEEeCCCCc
Confidence 34456678888887642 77777788776 35 4889998888766553 3454321221122
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+..+.+..+. +...+|+++--.+. ...++.+.+.|+++|.++.-
T Consensus 238 ~~~~~l~~~~---~~~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 238 DAVEAVRDLT---DGRGADYAFEAVGR---AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred cHHHHHHHHc---CCCCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEEE
Confidence 2322233221 13569977743332 24567788889999988753
No 433
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.46 E-value=19 Score=33.96 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=55.5
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
.+++|+=+|.|.+ |......+..+ +++|+.+|.+++..+.+ +..|. ++. +. +.
T Consensus 151 ~g~kvlViG~G~i--------------G~~~a~~L~~~--Ga~V~v~~r~~~~~~~~----~~~G~----~~~--~~-~~ 203 (296)
T PRK08306 151 HGSNVLVLGFGRT--------------GMTLARTLKAL--GANVTVGARKSAHLARI----TEMGL----SPF--HL-SE 203 (296)
T ss_pred CCCEEEEECCcHH--------------HHHHHHHHHHC--CCEEEEEECCHHHHHHH----HHcCC----eee--cH-HH
Confidence 5689999999752 55555555554 57999999998765443 33343 222 11 22
Q ss_pred HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
+.+. -..+|+||.-.+.. -.-+...+.++||+++ +|-..
T Consensus 204 l~~~-----l~~aDiVI~t~p~~---~i~~~~l~~~~~g~vI-IDla~ 242 (296)
T PRK08306 204 LAEE-----VGKIDIIFNTIPAL---VLTKEVLSKMPPEALI-IDLAS 242 (296)
T ss_pred HHHH-----hCCCCEEEECCChh---hhhHHHHHcCCCCcEE-EEEcc
Confidence 2332 25799999865432 2234566778887654 44433
No 434
>PRK08324 short chain dehydrogenase; Validated
Probab=80.45 E-value=17 Score=38.07 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=50.6
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++++|-+|++ |..+..+++.+. .+.+|+.++.+++..+.+.+.+... .++.++..|..+
T Consensus 421 ~gk~vLVTGas----------------ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd 481 (681)
T PRK08324 421 AGKVALVTGAA----------------GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTD 481 (681)
T ss_pred CCCEEEEecCC----------------CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCC
Confidence 44788888864 555666665543 4679999999998776655544332 467788777643
Q ss_pred h--HHHHhhcC--CCCceeEEEEcCC
Q 022597 198 S--LKALILNG--EASSYDFAFVDAE 219 (294)
Q Consensus 198 ~--l~~l~~~~--~~~~fD~vfiD~~ 219 (294)
. +....... ..+.+|.||..++
T Consensus 482 ~~~v~~~~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 482 EAAVQAAFEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 2 22211100 1257899987765
No 435
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=80.43 E-value=30 Score=32.98 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=63.7
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
..+.++++|+-.|+|.+ |..+..++++.+ ..++++++.+++..+.+++ .|. ..+.....+
T Consensus 172 ~~~~~g~~vlI~g~g~v--------------g~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~~----~g~-~~v~~~~~~ 231 (375)
T cd08282 172 AGVQPGDTVAVFGAGPV--------------GLMAAYSAILRG-ASRVYVVDHVPERLDLAES----IGA-IPIDFSDGD 231 (375)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCC-eEeccCccc
Confidence 34456677777888653 777777777653 2378889999887765543 343 112111112
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccc--------hHHHHHHHHhcccCCeEEEEecccC
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVIDNVLW 247 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~--------~~~~~~~~~~lLkpgG~ivid~vl~ 247 (294)
..+.+..+ . ...+|++|--.+... -...+..+.+.|+++|.++.-++..
T Consensus 232 ~~~~i~~~---~-~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~ 288 (375)
T cd08282 232 PVEQILGL---E-PGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYV 288 (375)
T ss_pred HHHHHHHh---h-CCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccC
Confidence 22222222 1 246898876544321 1234777889999999997665543
No 436
>PRK05967 cystathionine beta-lyase; Provisional
Probab=80.42 E-value=42 Score=33.10 Aligned_cols=123 Identities=13% Similarity=0.144 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHH-HHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~-~~~A~~~~~~ 181 (294)
-.|-...+-..++.+.++...+-+.+|+ +.....+...+.++.+|+..+..-.. ...+++.+++
T Consensus 62 gnPt~~~Le~~la~le~~~~~v~~sSG~---------------aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~ 126 (395)
T PRK05967 62 GTPTTDALCKAIDALEGSAGTILVPSGL---------------AAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKR 126 (395)
T ss_pred CChHHHHHHHHHHHHhCCCCEEEECcHH---------------HHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHh
Confidence 3454444444455555566667777766 44444444446667788877655433 3455667777
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEeccc
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVL 246 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl 246 (294)
.|. +++++..+..+.+++.. ...-.+|++..+ +......++.+.++.+. |.++++|++.
T Consensus 127 ~Gi--~v~~vd~~~~e~l~~al----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 127 LGV--EVEYYDPEIGAGIAKLM----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred cCe--EEEEeCCCCHHHHHHhc----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 776 36666433234344432 244678888753 23345556666666665 5677888874
No 437
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.40 E-value=10 Score=37.76 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=55.3
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+++|+-+|+|.+ |......++.+ +++|+.+|.++.....|. ..|. ++. +..+
T Consensus 193 l~Gk~VvViG~G~I--------------G~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~----~~G~----~v~--~lee 246 (406)
T TIGR00936 193 IAGKTVVVAGYGWC--------------GKGIAMRARGM--GARVIVTEVDPIRALEAA----MDGF----RVM--TMEE 246 (406)
T ss_pred CCcCEEEEECCCHH--------------HHHHHHHHhhC--cCEEEEEeCChhhHHHHH----hcCC----EeC--CHHH
Confidence 46789999999764 66666666655 579999999997543332 2243 222 2222
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHH-HHHhcccCCeEEEEe
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID 243 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~-~~~~lLkpgG~ivid 243 (294)
. + ...|++|.-.+. ...+. .....+|+|++++.-
T Consensus 247 a---l------~~aDVVItaTG~---~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 247 A---A------KIGDIFITATGN---KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred H---H------hcCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEE
Confidence 1 1 346988765442 34444 367889999988754
No 438
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=80.32 E-value=19 Score=32.85 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=58.5
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cch
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLA 195 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gda 195 (294)
..++.+++=.|+|.+ |.....++++. +.+++.++.+++..+.+++ .|...-+.... .+.
T Consensus 158 ~~~g~~vli~g~g~~--------------g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~ 217 (336)
T cd08276 158 LKPGDTVLVQGTGGV--------------SLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDW 217 (336)
T ss_pred CCCCCEEEEECCcHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCH
Confidence 345556665566432 66666666665 5789999999887776654 24432222211 122
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.+.+..+ .....+|+++-... ...+..+.+.|+++|.++.
T Consensus 218 ~~~~~~~---~~~~~~d~~i~~~~----~~~~~~~~~~l~~~G~~v~ 257 (336)
T cd08276 218 GEEVLKL---TGGRGVDHVVEVGG----PGTLAQSIKAVAPGGVISL 257 (336)
T ss_pred HHHHHHH---cCCCCCcEEEECCC----hHHHHHHHHhhcCCCEEEE
Confidence 2223322 12346999885443 2346677899999999875
No 439
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=80.23 E-value=54 Score=32.57 Aligned_cols=124 Identities=12% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCCh-HHHHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~-~~~~~A~~~~~~ 181 (294)
-.|....+-..++...++..++=.++|+ +.....+...+.++.+|+..+..- ......+..++.
T Consensus 62 ~~p~~~~Le~~lA~leg~~~al~~~sG~---------------~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~ 126 (431)
T PRK08248 62 MNPTTDVFEKRIAALEGGIGALAVSSGQ---------------AAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPK 126 (431)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECCHH---------------HHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHh
Confidence 4566777777788888888888888866 554444444455567777665332 233444555666
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccC
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLW 247 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~ 247 (294)
.|. ++.++..+-.+.+++.+ .....+|++..+ +......++.+.++.+. |..+++|+..-
T Consensus 127 ~Gv--~v~~vd~~d~e~l~~ai----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 127 LGI--TVKFVDPSDPENFEAAI----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred CCE--EEEEECCCCHHHHHHhc----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 665 34444332223333332 245678877532 11111122334443333 56777888753
No 440
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=80.18 E-value=24 Score=31.45 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=60.2
Q ss_pred HhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 115 VQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
....++++|+=.|+ |.+ |.....+++.. +.++++++.+++..+.++ ..|... ++..
T Consensus 132 ~~~~~g~~vlI~g~~g~~--------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~---~~~~ 188 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGV--------------GLLLTQWAKAL--GATVIGTVSSEEKAELAR----AAGADH---VINY 188 (320)
T ss_pred cCCCCCCEEEEEcCCchH--------------HHHHHHHHHHc--CCEEEEEcCCHHHHHHHH----HCCCCE---EEeC
Confidence 34556678988884 321 77777777776 578999998888766553 345432 2222
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.-.+....+........+|++|--.+. .....+.+.|+++|.++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 189 RDEDFVERVREITGGRGVDVVYDGVGK----DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred CchhHHHHHHHHcCCCCeeEEEECCCc----HhHHHHHHhhccCcEEEE
Confidence 111222222211123469999854432 345667888999998874
No 441
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=80.16 E-value=2.2 Score=39.14 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.0
Q ss_pred CcEEEEEeCChHHHHHHHHHHHHh
Q 022597 159 SGCLVACERDARSLEVAKKYYERA 182 (294)
Q Consensus 159 ~~~v~~id~~~~~~~~A~~~~~~~ 182 (294)
+-..+++|.+++.++.+.+.+...
T Consensus 244 ~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 244 GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCceEEEecCHHHHHHHHHHHHhh
Confidence 467899999999999999998864
No 442
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=80.05 E-value=35 Score=30.15 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=44.6
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC--CCCcEEEEEeCC-------------------hHHHHHHH
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL--PESGCLVACERD-------------------ARSLEVAK 176 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~--~~~~~v~~id~~-------------------~~~~~~A~ 176 (294)
....+|+=+|||. .+-.++..+ ..-++++.+|.+ ..-.+.+.
T Consensus 19 l~~~~VlviG~Gg-----------------lGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~ 81 (202)
T TIGR02356 19 LLNSHVLIIGAGG-----------------LGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAA 81 (202)
T ss_pred hcCCCEEEECCCH-----------------HHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHH
Confidence 3556899999964 333333332 113689999987 23345566
Q ss_pred HHHHHhCCCCcEEEEEcchhh-hHHHHhhcCCCCceeEEEEcCC
Q 022597 177 KYYERAGVSHKVKIKHGLAAD-SLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 177 ~~~~~~gl~~~v~~~~gda~~-~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
+.+++.+..-+++.+.....+ .+..+ -..||+|+.-.+
T Consensus 82 ~~l~~~np~v~i~~~~~~i~~~~~~~~-----~~~~D~Vi~~~d 120 (202)
T TIGR02356 82 QRLRELNSDIQVTALKERVTAENLELL-----INNVDLVLDCTD 120 (202)
T ss_pred HHHHHhCCCCEEEEehhcCCHHHHHHH-----HhCCCEEEECCC
Confidence 666665443344444433321 22333 257999876554
No 443
>PLN02702 L-idonate 5-dehydrogenase
Probab=79.92 E-value=21 Score=33.74 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=62.7
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE--E
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--H 192 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~--~ 192 (294)
.....+++++-+|+|.+ |..++.++++.+ -..+++++.+++..+.++ ..|....+.+. .
T Consensus 177 ~~~~~g~~vlI~g~g~v--------------G~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~ 237 (364)
T PLN02702 177 ANIGPETNVLVMGAGPI--------------GLVTMLAARAFG-APRIVIVDVDDERLSVAK----QLGADEIVLVSTNI 237 (364)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCEEEecCccc
Confidence 33456678888888653 777777888763 235888998877666544 34554322221 1
Q ss_pred cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+..+.+..+... ..+.+|++|--.+. ...+..+++.|+++|.++.-
T Consensus 238 ~~~~~~~~~~~~~-~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 238 EDVESEVEEIQKA-MGGGIDVSFDCVGF---NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred ccHHHHHHHHhhh-cCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 2222222222111 13468988765432 23577788999999998753
No 444
>PRK07680 late competence protein ComER; Validated
Probab=79.80 E-value=12 Score=34.50 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=49.6
Q ss_pred cHHHHHHHHHCCCC-----cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc
Q 022597 146 GYSSLAIALVLPES-----GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK 220 (294)
Q Consensus 146 G~~sl~la~~~~~~-----~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~ 220 (294)
|..+..++..+... ..|+.++.+++..+...+ +. ..+++. .+..+.+ ...|+||+-...
T Consensus 9 G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~---~~---~g~~~~-~~~~~~~---------~~aDiVilav~p 72 (273)
T PRK07680 9 GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKE---RY---PGIHVA-KTIEEVI---------SQSDLIFICVKP 72 (273)
T ss_pred cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHH---Hc---CCeEEE-CCHHHHH---------HhCCEEEEecCH
Confidence 66666666664322 368999999876644332 11 023332 2333322 357999988876
Q ss_pred cchHHHHHHHHhcccCCeEEE
Q 022597 221 RMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 221 ~~~~~~~~~~~~lLkpgG~iv 241 (294)
....+.++.+.+.++++.+++
T Consensus 73 ~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 73 LDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred HHHHHHHHHHHhhcCCCCEEE
Confidence 667788888888888877544
No 445
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.69 E-value=47 Score=29.95 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=52.4
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.++++|-.|++. ..+..+++.+. .+.+|+.++.+++.++.+.+.++... ..++.++..|..+
T Consensus 7 ~~k~~lItGas~----------------gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~ 69 (263)
T PRK08339 7 SGKLAFTTASSK----------------GIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTK 69 (263)
T ss_pred CCCEEEEeCCCC----------------cHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCC
Confidence 456788888764 35566666553 46899999999888776666655431 2357788888754
Q ss_pred h--HHHHhhcC-CCCceeEEEEcCC
Q 022597 198 S--LKALILNG-EASSYDFAFVDAE 219 (294)
Q Consensus 198 ~--l~~l~~~~-~~~~fD~vfiD~~ 219 (294)
. +..+...- ..+.+|.++..++
T Consensus 70 ~~~i~~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 70 REDLERTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHHHHHHHHhhCCCcEEEECCC
Confidence 2 22222110 1357898886654
No 446
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=79.64 E-value=13 Score=34.49 Aligned_cols=86 Identities=20% Similarity=0.231 Sum_probs=50.6
Q ss_pred cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh----C--CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC
Q 022597 146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA----G--VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 218 (294)
Q Consensus 146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~----g--l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~ 218 (294)
|..+..++..+. .+..|+.++.+++..+..++..... + +...++.. .+..+ . ....|+||+-.
T Consensus 10 G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~-----~~~~D~vi~~v 79 (325)
T PRK00094 10 GSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLAE----A-----LADADLILVAV 79 (325)
T ss_pred CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHHH----H-----HhCCCEEEEeC
Confidence 556666666553 2458999999998776554421000 0 00012221 12211 1 24679999988
Q ss_pred CccchHHHHHHHHhcccCCeEEE
Q 022597 219 EKRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 219 ~~~~~~~~~~~~~~lLkpgG~iv 241 (294)
......+.++.+.+.++++.+++
T Consensus 80 ~~~~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 80 PSQALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 76667777788888888877654
No 447
>PTZ00357 methyltransferase; Provisional
Probab=79.62 E-value=7.2 Score=41.57 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=64.5
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHC---CCCcEEEEEeCChHHHHHHHHHHHH-hCC-------CCcEEE
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYER-AGV-------SHKVKI 190 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~~~~~v~~id~~~~~~~~A~~~~~~-~gl-------~~~v~~ 190 (294)
.|+-+|+|- |-..-...++. .-..+|++||.|+....+...+.+. ... .++|++
T Consensus 703 VImVVGAGR---------------GPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtI 767 (1072)
T PTZ00357 703 HLVLLGCGR---------------GPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEV 767 (1072)
T ss_pred EEEEEcCCc---------------cHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEE
Confidence 578899999 76554444433 3356899999998765555444322 122 356999
Q ss_pred EEcchhhhHHHHhh-----cCCCCceeEEEEc-----CCccchHHHHHHHHhcccC----CeE
Q 022597 191 KHGLAADSLKALIL-----NGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRV----GGI 239 (294)
Q Consensus 191 ~~gda~~~l~~l~~-----~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkp----gG~ 239 (294)
+.+|.+++-..... ...-+++|+|+.. ++-+--++-++-+.+.||+ +|+
T Consensus 768 I~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 768 IVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred EeCcccccccccccccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 99999887321000 0012479999753 2234457777788888876 776
No 448
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=79.59 E-value=3.6 Score=32.34 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=40.4
Q ss_pred CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc---CCCc-------ccCcccCCcchHHHHHHHHHhhhCCCe
Q 022597 208 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL---WHGK-------VADQMVNDAKTISIRNFNKNLMEDERV 277 (294)
Q Consensus 208 ~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl---~~g~-------v~~~~~~~~~~~~ir~f~~~l~~~~~~ 277 (294)
...||++++|+...--++.+..+...++-||++++---- |+-. ...+...+....-++.|.+.+.+++.+
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~~~~~~F~~rf~~~L~~~~~i 88 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYTDVTPRFIRRFIRSLQSDPGI 88 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS-B--HHHHHHHHHHHCCSTTS
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCCcccHHHHHHHHHHHHHCcCC
Confidence 578999999998777889999999999999999873211 2111 111222233444677888888888875
Q ss_pred E
Q 022597 278 S 278 (294)
Q Consensus 278 ~ 278 (294)
.
T Consensus 89 ~ 89 (92)
T PF08351_consen 89 I 89 (92)
T ss_dssp -
T ss_pred c
Confidence 4
No 449
>PRK06234 methionine gamma-lyase; Provisional
Probab=79.54 E-value=25 Score=34.31 Aligned_cols=125 Identities=11% Similarity=0.182 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHHh
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERA 182 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~~ 182 (294)
.|...++-..++...+...++-+++|+ +.....+...++++.+|+..+..-. ........++..
T Consensus 63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~---------------~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~ 127 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEAAVVAASGM---------------GAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRY 127 (400)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHH---------------HHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhC
Confidence 466667777777777777788777766 4444444334555667776654222 233334445555
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhccc---CCeEEEEecccCCC
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIR---VGGIIVIDNVLWHG 249 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLk---pgG~ivid~vl~~g 249 (294)
|. ++.++..+-.+.++..+ ...-++|++..+ +.....-++.+.++.+ +|-++++|+..-.+
T Consensus 128 G~--~v~~vd~~d~e~l~~~i----~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~ 193 (400)
T PRK06234 128 GV--EVTFVDTSNLEEVRNAL----KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193 (400)
T ss_pred Ce--EEEEECCCCHHHHHHHh----ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence 54 24443322122233322 234578886543 1111112334444444 37788999986444
No 450
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.48 E-value=70 Score=31.86 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=30.0
Q ss_pred CcEEEEEeCChHH---HHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597 159 SGCLVACERDARS---LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 159 ~~~v~~id~~~~~---~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
+.+|..++.|+.. .+..+.+.+..|+. +... .+..+....+.. ...+|+|++|..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~~-~~~~~l~~~l~~---~~~~DlVlIDt~ 308 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEVV-YDPKELAKALEQ---LRDCDVILIDTA 308 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEcc-CCHHhHHHHHHH---hCCCCEEEEeCC
Confidence 4678888888753 34455555556653 2221 122222222211 246999999965
No 451
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.38 E-value=33 Score=32.63 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=44.4
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH-HHHHHHHHhCCCCcEEEEE-cchhhh
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE-VAKKYYERAGVSHKVKIKH-GLAADS 198 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~-~A~~~~~~~gl~~~v~~~~-gda~~~ 198 (294)
.+|.=||+|.| |+.....+...+-..+++.+|++++..+ .+........+....++.. +|+.+.
T Consensus 4 ~Ki~IiGaG~V--------------G~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~ 69 (312)
T cd05293 4 NKVTVVGVGQV--------------GMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT 69 (312)
T ss_pred CEEEEECCCHH--------------HHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh
Confidence 47888999875 6655544444343468999999887543 3333333332332235553 666542
Q ss_pred HHHHhhcCCCCceeEEEEcCC
Q 022597 199 LKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 199 l~~l~~~~~~~~fD~vfiD~~ 219 (294)
...|+|++-++
T Consensus 70 ----------~~adivvitaG 80 (312)
T cd05293 70 ----------ANSKVVIVTAG 80 (312)
T ss_pred ----------CCCCEEEECCC
Confidence 45799988554
No 452
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=79.32 E-value=18 Score=34.87 Aligned_cols=87 Identities=18% Similarity=0.165 Sum_probs=65.3
Q ss_pred cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHH
Q 022597 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE 225 (294)
Q Consensus 146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~ 225 (294)
|...-.||+.. +++|+++=-+++-++.+++ ..|.+.-+..+..|..+.|++.. ....|+.|.+.+. +
T Consensus 164 GsvvgQiAKlk--G~rVVGiaGg~eK~~~l~~---~lGfD~~idyk~~d~~~~L~~a~----P~GIDvyfeNVGg----~ 230 (340)
T COG2130 164 GSVVGQIAKLK--GCRVVGIAGGAEKCDFLTE---ELGFDAGIDYKAEDFAQALKEAC----PKGIDVYFENVGG----E 230 (340)
T ss_pred chHHHHHHHhh--CCeEEEecCCHHHHHHHHH---hcCCceeeecCcccHHHHHHHHC----CCCeEEEEEcCCc----h
Confidence 66666788743 7999999999998876654 35777778888777766665543 4679999988875 4
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 022597 226 YFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 226 ~~~~~~~lLkpgG~ivid~v 245 (294)
.++.+.++|++.+.|.+...
T Consensus 231 v~DAv~~~ln~~aRi~~CG~ 250 (340)
T COG2130 231 VLDAVLPLLNLFARIPVCGA 250 (340)
T ss_pred HHHHHHHhhccccceeeeee
Confidence 67778888888888887544
No 453
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=79.26 E-value=28 Score=31.74 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=57.9
Q ss_pred HhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 115 VQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
....++.+||=.|+ |.+ |..+..++++. +.+++.+..+++..+.+++ .|..+ ++..
T Consensus 135 ~~~~~g~~vlI~g~~g~i--------------g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~---~~~~ 191 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAV--------------GKLVAMLAAAR--GINVINLVRRDAGVAELRA----LGIGP---VVST 191 (324)
T ss_pred hCCCCCCEEEEcccccHH--------------HHHHHHHHHHC--CCeEEEEecCHHHHHHHHh----cCCCE---EEcC
Confidence 34456678887775 322 77777777776 4778777777766554443 35532 2222
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.-.+....+........+|+||-..+. .....+++.|+++|.++.
T Consensus 192 ~~~~~~~~i~~~~~~~~~d~v~d~~g~----~~~~~~~~~l~~~g~~v~ 236 (324)
T cd08292 192 EQPGWQDKVREAAGGAPISVALDSVGG----KLAGELLSLLGEGGTLVS 236 (324)
T ss_pred CCchHHHHHHHHhCCCCCcEEEECCCC----hhHHHHHHhhcCCcEEEE
Confidence 211222222211123469999854443 234677889999999885
No 454
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=79.24 E-value=37 Score=30.89 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=60.5
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
.....++.+++=.|...++ |..+..++++. +.++++++.+++..+.++ ..|... ++..
T Consensus 137 ~~~~~~~~~vlI~g~~~~~-------------g~~~~~la~~~--g~~v~~~~~~~~~~~~~~----~~g~~~---~~~~ 194 (324)
T cd08244 137 LATLTPGDVVLVTAAAGGL-------------GSLLVQLAKAA--GATVVGAAGGPAKTALVR----ALGADV---AVDY 194 (324)
T ss_pred hcCCCCCCEEEEEcCCchH-------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HcCCCE---EEec
Confidence 3344566788888853212 66777777776 578999999988776653 345432 2221
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.-.+..+.+........+|+++--.+.. ..+.+++.|+++|.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~d~vl~~~g~~----~~~~~~~~l~~~g~~v~ 239 (324)
T cd08244 195 TRPDWPDQVREALGGGGVTVVLDGVGGA----IGRAALALLAPGGRFLT 239 (324)
T ss_pred CCccHHHHHHHHcCCCCceEEEECCChH----hHHHHHHHhccCcEEEE
Confidence 1112222222111234699998544322 24667888999998885
No 455
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=79.04 E-value=28 Score=33.85 Aligned_cols=123 Identities=10% Similarity=0.139 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeC-ChHHHHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~-~~~~~~~A~~~~~~ 181 (294)
-.|....+=..++...+...++-+++|+ +.....++ .+.++.+|+..+. ...........++.
T Consensus 48 ~~p~~~~Le~~la~l~g~~~al~~~SG~---------------~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~ 111 (380)
T PRK06176 48 GNPTRFALEELIADLEGGVKGFAFASGL---------------AGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVK 111 (380)
T ss_pred CChhHHHHHHHHHHHhCCCCEEEECCHH---------------HHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHh
Confidence 3455555566666666677787778866 43333332 3455777777664 33344445555666
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccC
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLW 247 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~ 247 (294)
.|+. ++++..+-.+.+++.. .....+||+..+ +.....-++.+.++.+. |..+++|+..-
T Consensus 112 ~gi~--v~~vd~~d~e~l~~ai----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 112 NGLS--CTIIDTSDLSQIKKAI----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred cCeE--EEEcCCCCHHHHHHhc----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 5642 3433222223333322 345678886433 11111223344444444 56777887753
No 456
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=78.92 E-value=29 Score=34.75 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=55.6
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+++|+=+|+|.+ |......++.. +.+|+.+|.++.....+.. .|. ++. +..+
T Consensus 210 l~Gk~VlViG~G~I--------------G~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~e 263 (425)
T PRK05476 210 IAGKVVVVAGYGDV--------------GKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TMEE 263 (425)
T ss_pred CCCCEEEEECCCHH--------------HHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CHHH
Confidence 36789999999764 66666666665 5799999999976433322 232 221 2222
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHH-HHHhcccCCeEEEEe
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID 243 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~-~~~~lLkpgG~ivid 243 (294)
. ....|+||.-.+. ...+. .....+|+|++++.-
T Consensus 264 ----a-----l~~aDVVI~aTG~---~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 264 ----A-----AELGDIFVTATGN---KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred ----H-----HhCCCEEEECCCC---HHHHHHHHHhcCCCCCEEEEc
Confidence 2 1358988875543 23454 567889999988743
No 457
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=78.87 E-value=11 Score=38.29 Aligned_cols=87 Identities=13% Similarity=0.128 Sum_probs=55.6
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+++|+=+|+|.+ |......++.. +.+|+.+|.++.....+.. .|. ++. +..+
T Consensus 252 LaGKtVgVIG~G~I--------------Gr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~----~G~----~~~--~lee 305 (476)
T PTZ00075 252 IAGKTVVVCGYGDV--------------GKGCAQALRGF--GARVVVTEIDPICALQAAM----EGY----QVV--TLED 305 (476)
T ss_pred cCCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEeCCchhHHHHHh----cCc----eec--cHHH
Confidence 46789999999763 65555555554 5799999999875433322 232 222 2222
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHH-HHHHhcccCCeEEEE
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYF-ELLLQLIRVGGIIVI 242 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~-~~~~~lLkpgG~ivi 242 (294)
+ -...|+|+...+.. ..+ ......+|||++++-
T Consensus 306 ----l-----l~~ADIVI~atGt~---~iI~~e~~~~MKpGAiLIN 339 (476)
T PTZ00075 306 ----V-----VETADIFVTATGNK---DIITLEHMRRMKNNAIVGN 339 (476)
T ss_pred ----H-----HhcCCEEEECCCcc---cccCHHHHhccCCCcEEEE
Confidence 2 24689999876532 233 366788999998874
No 458
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=78.83 E-value=24 Score=34.01 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=47.7
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC--CCCcEEEEEeCCh---------------------HHHHHH
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL--PESGCLVACERDA---------------------RSLEVA 175 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~--~~~~~v~~id~~~---------------------~~~~~A 175 (294)
...+|+=||||. .+-.++..+ ..-++++.+|.+. .-.+.|
T Consensus 23 ~~~~VlIiG~Gg-----------------lGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa 85 (338)
T PRK12475 23 REKHVLIVGAGA-----------------LGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAA 85 (338)
T ss_pred cCCcEEEECCCH-----------------HHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHH
Confidence 456899999964 333333322 1136899999974 234666
Q ss_pred HHHHHHhCCCCcEEEEEcchh-hhHHHHhhcCCCCceeEEEEcCC
Q 022597 176 KKYYERAGVSHKVKIKHGLAA-DSLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 176 ~~~~~~~gl~~~v~~~~gda~-~~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
++.+++.+..-+++.+..+.. +.+..+ -..+|+|+.-.+
T Consensus 86 ~~~l~~inp~v~i~~~~~~~~~~~~~~~-----~~~~DlVid~~D 125 (338)
T PRK12475 86 KEHLRKINSEVEIVPVVTDVTVEELEEL-----VKEVDLIIDATD 125 (338)
T ss_pred HHHHHHHCCCcEEEEEeccCCHHHHHHH-----hcCCCEEEEcCC
Confidence 777777655545666655543 233444 357998886554
No 459
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=78.82 E-value=22 Score=32.53 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=58.9
Q ss_pred hhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 117 ILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 117 ~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...+++||=.|. |.+ |..+..+++.. +.++++++.+++..+.+++. .|...-+.....+.
T Consensus 143 ~~~~~~vlI~g~~g~i--------------g~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~ 203 (329)
T cd05288 143 PKPGETVVVSAAAGAV--------------GSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDL 203 (329)
T ss_pred CCCCCEEEEecCcchH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhH
Confidence 345578887784 322 66667777775 57899999988876655442 34432222221122
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.+.+..+ . .+.+|.+|-..+. ..++.+.+.|+++|.++.
T Consensus 204 ~~~v~~~---~-~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 204 AEALKEA---A-PDGIDVYFDNVGG----EILDAALTLLNKGGRIAL 242 (329)
T ss_pred HHHHHHh---c-cCCceEEEEcchH----HHHHHHHHhcCCCceEEE
Confidence 2222222 1 2569988854432 356777888999998874
No 460
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=78.77 E-value=69 Score=31.38 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHHh
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERA 182 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~~ 182 (294)
.|....+-..++...++..++-..+|+ ....+.+...+.++.+|+..+..-. ............
T Consensus 52 npt~~~Le~~lA~leg~e~ivvt~gg~---------------~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~ 116 (388)
T PRK08861 52 NPNRGLLEQTLSELESGKGAVVTNCGT---------------SALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKG 116 (388)
T ss_pred CchHHHHHHHHHHHhCCCeEEEECCHH---------------HHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcC
Confidence 455666666777777777888777755 4444444333555667776555433 233333434333
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhccc-CCeEEEEecccCCC
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIR-VGGIIVIDNVLWHG 249 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLk-pgG~ivid~vl~~g 249 (294)
|+ ++.++...-.+.+...+ ...-++|++..+ +.....-++.+.++.+ .|.++++|+..-.+
T Consensus 117 gi--~v~~vd~~d~e~l~~~i----~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 117 DF--KVQFVDQSDAAALDAAL----AKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred Ce--EEEEECCCCHHHHHHhc----CcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 33 23333221122233322 235688887533 1111111233333333 36778888886444
No 461
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.69 E-value=21 Score=33.27 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=57.6
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
.++++||-.|+|.+ |..+..+++.. +. ++++++.+++..+.++ ..|...-+.....+..
T Consensus 162 ~~g~~vlV~g~g~v--------------g~~~~~la~~~--G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~ 221 (341)
T cd05281 162 VSGKSVLITGCGPI--------------GLMAIAVAKAA--GASLVIASDPNPYRLELAK----KMGADVVINPREEDVV 221 (341)
T ss_pred CCCCEEEEECCCHH--------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHH----HhCcceeeCcccccHH
Confidence 35567777777543 66777777776 35 6888877776665444 3454322222222222
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.+..+. ..+.+|++|-..+. ....+.+.+.|+++|.++.
T Consensus 222 -~~~~~~---~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 222 -EVKSVT---DGTGVDVVLEMSGN---PKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred -HHHHHc---CCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEE
Confidence 222221 23579999865432 2345667888999999875
No 462
>PRK06914 short chain dehydrogenase; Provisional
Probab=78.60 E-value=50 Score=29.67 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198 (294)
Q Consensus 120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~ 198 (294)
.+++|-+|+. |..+..+++.+ ..+.+|++++.+++..+...+..+..+...+++++.+|..+.
T Consensus 3 ~k~~lItGas----------------g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 66 (280)
T PRK06914 3 KKIAIVTGAS----------------SGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQ 66 (280)
T ss_pred CCEEEEECCC----------------chHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCH
Confidence 3467888864 56666666654 346799999999887766666565555556788988887653
Q ss_pred H--HH---HhhcCCCCceeEEEEcCC
Q 022597 199 L--KA---LILNGEASSYDFAFVDAE 219 (294)
Q Consensus 199 l--~~---l~~~~~~~~fD~vfiD~~ 219 (294)
- .. .... .++.|.|+..++
T Consensus 67 ~~~~~~~~~~~~--~~~id~vv~~ag 90 (280)
T PRK06914 67 NSIHNFQLVLKE--IGRIDLLVNNAG 90 (280)
T ss_pred HHHHHHHHHHHh--cCCeeEEEECCc
Confidence 1 11 1111 257898887653
No 463
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=78.53 E-value=6.1 Score=37.16 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=27.2
Q ss_pred CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 209 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 209 ~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+.+|+||+-.......+.++.+.+++.+++.++.
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 6799999887655567788888899999987764
No 464
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=78.46 E-value=11 Score=35.44 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=55.4
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.+|+=+|. |..+-++++.+.. ..++++.|.+....+.+. ..|+.+. ..+.
T Consensus 4 ~~v~IvG~-----------------GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~----~lgv~d~----~~~~-- 56 (279)
T COG0287 4 MKVGIVGL-----------------GLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL----ELGVIDE----LTVA-- 56 (279)
T ss_pred cEEEEECC-----------------chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh----hcCcccc----cccc--
Confidence 36777887 5555566665532 346788888877665443 2333321 1011
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv 241 (294)
..... ....|+||+..+.....++++.+.+.|++|.++.
T Consensus 57 ~~~~~-----~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 57 GLAEA-----AAEADLVIVAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred hhhhh-----cccCCEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence 10111 3568999999988888888999888888886553
No 465
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=78.30 E-value=41 Score=31.14 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=58.4
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
...++++||=.|+|.+ |...+.+++.. +. ++++++.+++..+.+++ .|.. .+.....+
T Consensus 164 ~~~~~~~vlI~g~g~v--------------g~~~~~~a~~~--g~~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~ 222 (344)
T cd08284 164 QVRPGDTVAVIGCGPV--------------GLCAVLSAQVL--GAARVFAVDPVPERLERAAA----LGAE-PINFEDAE 222 (344)
T ss_pred CCccCCEEEEECCcHH--------------HHHHHHHHHHc--CCceEEEEcCCHHHHHHHHH----hCCe-EEecCCcC
Confidence 3445678877787543 66666677765 43 78888888776655443 4432 11111112
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
....+..+ .....+|++|--.+. ...++...+.|+++|.++.-
T Consensus 223 ~~~~l~~~---~~~~~~dvvid~~~~---~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 223 PVERVREA---TEGRGADVVLEAVGG---AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred HHHHHHHH---hCCCCCCEEEECCCC---HHHHHHHHHhcccCCEEEEE
Confidence 22222222 123568988754432 24567778889999998853
No 466
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.18 E-value=24 Score=32.69 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=57.7
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh-------CC-C------
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-------GV-S------ 185 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~-------gl-~------ 185 (294)
++|-=||+| ..+..++..+. .+..|+..|.+++.++.+.+.+++. |. .
T Consensus 5 ~kI~vIGaG-----------------~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~ 67 (292)
T PRK07530 5 KKVGVIGAG-----------------QMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAA 67 (292)
T ss_pred CEEEEECCc-----------------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 467778885 45555554442 2568999999999988766544322 21 1
Q ss_pred --CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEE
Q 022597 186 --HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 186 --~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~iv 241 (294)
.++++. .+. ..+ ...|+|+.-.+. ..-..+|+.+.+.++++.+++
T Consensus 68 ~~~~i~~~-~~~----~~~------~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 68 ALARISTA-TDL----EDL------ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred HHhCeEee-CCH----HHh------cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 123332 222 222 467999887652 234677888888899988765
No 467
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=78.08 E-value=40 Score=30.49 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=59.4
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
....++++++=.|+|.+ |.....+++.. +.+ ++++..+++..+.+ +..|.. .++..
T Consensus 125 ~~~~~~~~vlI~g~g~v--------------g~~~~~la~~~--g~~~v~~~~~~~~~~~~~----~~~g~~---~~~~~ 181 (312)
T cd08269 125 GWIRAGKTVAVIGAGFI--------------GLLFLQLAAAA--GARRVIAIDRRPARLALA----RELGAT---EVVTD 181 (312)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHH----HHhCCc---eEecC
Confidence 34456678887786542 66666677765 466 88888888766533 444552 22221
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
...+....+........+|.++--.+. ....+...+.|+++|.++.-
T Consensus 182 ~~~~~~~~l~~~~~~~~vd~vld~~g~---~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 182 DSEAIVERVRELTGGAGADVVIEAVGH---QWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred CCcCHHHHHHHHcCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence 111222222211123468988754432 23566678889999998853
No 468
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.05 E-value=12 Score=38.31 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=59.2
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
.+++=+|+ |-.+..+++.+.+ +..++.+|.|++.++.+++ . ...++.||+.+.
T Consensus 418 ~hiiI~G~-----------------G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~- 471 (558)
T PRK10669 418 NHALLVGY-----------------GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANE- 471 (558)
T ss_pred CCEEEECC-----------------ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCH-
Confidence 47888888 6677778887753 5689999999998776653 2 367889998762
Q ss_pred HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+.+.+. .-++.|.+++..+...-....-.+.+...|+..++.
T Consensus 472 ~~L~~a-~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 472 EIMQLA-HLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred HHHHhc-CccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence 222211 146889887654322222222223344567766664
No 469
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=77.82 E-value=19 Score=35.37 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=62.1
Q ss_pred eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc-EEEEEcchhhhHH
Q 022597 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLK 200 (294)
Q Consensus 122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~-v~~~~gda~~~l~ 200 (294)
+|+-++=.. |..+.+++..-+ +.+--+--.....++|++++|+... +++.. ..+.+
T Consensus 47 ~~~i~nd~f---------------Gal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~--~~~~~- 103 (378)
T PRK15001 47 PVLILNDAF---------------GALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLD--STADY- 103 (378)
T ss_pred CEEEEcCch---------------hHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeec--ccccc-
Confidence 688899988 888888884322 2332233334567789999998643 55542 22222
Q ss_pred HHhhcCCCCceeEEEEcCCcc--chHHHHHHHHhcccCCeEEEEe
Q 022597 201 ALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 201 ~l~~~~~~~~fD~vfiD~~~~--~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+.+|+|++-.+|. .....+..+.+.|.||+.|++-
T Consensus 104 -------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 104 -------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred -------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 46699999887754 3566677778899999998754
No 470
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=77.71 E-value=21 Score=33.36 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=59.7
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...++++||=.|+|.+ |..++.++++.. ...+++++.+++..+.+ ++.|...-+.....+.
T Consensus 171 ~~~~g~~vlI~g~g~v--------------G~~~~~~a~~~G-~~~v~~~~~~~~~~~~~----~~~g~~~v~~~~~~~~ 231 (350)
T cd08256 171 NIKFDDVVVLAGAGPL--------------GLGMIGAARLKN-PKKLIVLDLKDERLALA----RKFGADVVLNPPEVDV 231 (350)
T ss_pred CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CcEEEEEcCCHHHHHHH----HHcCCcEEecCCCcCH
Confidence 3445667766777653 777777888764 34578889888766544 3445532111111222
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.+.+..+. ....+|++|--.+. ...+..+.+.++++|.++.-.
T Consensus 232 ~~~~~~~~---~~~~vdvvld~~g~---~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 232 VEKIKELT---GGYGCDIYIEATGH---PSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred HHHHHHHh---CCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEEc
Confidence 23333321 12458988744332 234666788999999987643
No 471
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=77.64 E-value=11 Score=32.53 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=51.5
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+++|.=+|+|.+ |.-....++++ +.+|+++|.++.... .....+ + ...+..+
T Consensus 34 l~g~tvgIiG~G~I--------------G~~vA~~l~~f--G~~V~~~d~~~~~~~----~~~~~~----~--~~~~l~e 87 (178)
T PF02826_consen 34 LRGKTVGIIGYGRI--------------GRAVARRLKAF--GMRVIGYDRSPKPEE----GADEFG----V--EYVSLDE 87 (178)
T ss_dssp STTSEEEEESTSHH--------------HHHHHHHHHHT--T-EEEEEESSCHHHH----HHHHTT----E--EESSHHH
T ss_pred cCCCEEEEEEEcCC--------------cCeEeeeeecC--CceeEEecccCChhh----hccccc----c--eeeehhh
Confidence 45679999999654 55555555555 689999999998654 222222 2 2223333
Q ss_pred hHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEE
Q 022597 198 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~iv 241 (294)
.+ ...|+|++..+- ....-+=+..+..+|+|.++|
T Consensus 88 ll---------~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 88 LL---------AQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp HH---------HH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE
T ss_pred hc---------chhhhhhhhhccccccceeeeeeeeeccccceEEE
Confidence 33 457999988762 111112233467888888776
No 472
>PLN02494 adenosylhomocysteinase
Probab=77.33 E-value=13 Score=37.75 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=55.8
Q ss_pred hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
..+++|+-+|+|.+ |......++.+ +.+|+.+|.++.....|. ..|.. +. +..+
T Consensus 252 LaGKtVvViGyG~I--------------Gr~vA~~aka~--Ga~VIV~e~dp~r~~eA~----~~G~~----vv--~leE 305 (477)
T PLN02494 252 IAGKVAVICGYGDV--------------GKGCAAAMKAA--GARVIVTEIDPICALQAL----MEGYQ----VL--TLED 305 (477)
T ss_pred cCCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEeCCchhhHHHH----hcCCe----ec--cHHH
Confidence 45689999999764 66666666655 578999999987543332 22332 21 2222
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.+ ...|+||...+.. .-+.+..++.+++||+++-
T Consensus 306 al---------~~ADVVI~tTGt~--~vI~~e~L~~MK~GAiLiN 339 (477)
T PLN02494 306 VV---------SEADIFVTTTGNK--DIIMVDHMRKMKNNAIVCN 339 (477)
T ss_pred HH---------hhCCEEEECCCCc--cchHHHHHhcCCCCCEEEE
Confidence 22 3579988754422 1223667889999999874
No 473
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=77.33 E-value=28 Score=32.08 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=57.3
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeC--ChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACER--DARSLEVAKKYYERAGVSHKVKIKH 192 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~--~~~~~~~A~~~~~~~gl~~~v~~~~ 192 (294)
....++++||-.|+|.+ |..++.++++. +.+|+.+.. +++..+.+ +..|... +....
T Consensus 160 ~~~~~g~~vlI~g~g~~--------------g~~~~~la~~~--G~~v~~~~~~~~~~~~~~~----~~~g~~~-~~~~~ 218 (306)
T cd08258 160 SGIRPGDTVVVFGPGPI--------------GLLAAQVAKLQ--GATVVVVGTEKDEVRLDVA----KELGADA-VNGGE 218 (306)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCEEEEECCCCCHHHHHHH----HHhCCcc-cCCCc
Confidence 33445667766665432 66666777776 467766533 33333333 3345532 22222
Q ss_pred cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597 193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+..+.+..+. ....+|+++-..+. ...++...+.|+++|.++.-..
T Consensus 219 ~~~~~~l~~~~---~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 265 (306)
T cd08258 219 EDLAELVNEIT---DGDGADVVIECSGA---VPALEQALELLRKGGRIVQVGI 265 (306)
T ss_pred CCHHHHHHHHc---CCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEEcc
Confidence 33333333321 23568998765432 3467777888999999885443
No 474
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=77.25 E-value=30 Score=31.72 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=58.8
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...++++++=.|....+ |..+..+++.. +.++++++.+++..+.++ ..|... +...+-
T Consensus 136 ~~~~~~~vlI~ga~g~i-------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~---v~~~~~ 193 (329)
T cd08250 136 EMKSGETVLVTAAAGGT-------------GQFAVQLAKLA--GCHVIGTCSSDEKAEFLK----SLGCDR---PINYKT 193 (329)
T ss_pred CCCCCCEEEEEeCccHH-------------HHHHHHHHHHc--CCeEEEEeCcHHHHHHHH----HcCCce---EEeCCC
Confidence 44566788888853212 76777777775 578999988887766553 345422 222221
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.+..+.+.... ...+|++|-..+. ..+..+++.|+++|.++.
T Consensus 194 ~~~~~~~~~~~-~~~vd~v~~~~g~----~~~~~~~~~l~~~g~~v~ 235 (329)
T cd08250 194 EDLGEVLKKEY-PKGVDVVYESVGG----EMFDTCVDNLALKGRLIV 235 (329)
T ss_pred ccHHHHHHHhc-CCCCeEEEECCcH----HHHHHHHHHhccCCeEEE
Confidence 11112221111 2468988854432 456777888999998874
No 475
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.25 E-value=21 Score=34.28 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=58.3
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHH-------hCCC-----Cc
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYER-------AGVS-----HK 187 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~-------~gl~-----~~ 187 (294)
++|--||+|+ .+..++..+ ..+..|+..|.+++..+.+++.+++ .|+. .+
T Consensus 8 ~~VaVIGaG~-----------------MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 70 (321)
T PRK07066 8 KTFAAIGSGV-----------------IGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPAR 70 (321)
T ss_pred CEEEEECcCH-----------------HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhh
Confidence 4788889965 333333322 2368999999999988776665442 2221 22
Q ss_pred EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEecc
Q 022597 188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~ivid~v 245 (294)
+++. .+ +... -...|+|+...+. .--..+|..+.+.++|+. ++..|.
T Consensus 71 i~~~-~~----l~~a-----v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnT 119 (321)
T PRK07066 71 LRFV-AT----IEAC-----VADADFIQESAPEREALKLELHERISRAAKPDA-IIASST 119 (321)
T ss_pred ceec-CC----HHHH-----hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECC
Confidence 3332 12 2121 2567999987652 224678888888899887 444443
No 476
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.19 E-value=12 Score=35.75 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=57.8
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH-HhCCC------CcEEEEEc
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVS------HKVKIKHG 193 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~-~~gl~------~~v~~~~g 193 (294)
.+|.=+|+| ..+..++..+...+.++....+++..+..++.-. ...+. .++.+. .
T Consensus 8 mkI~IiGaG-----------------a~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t-~ 69 (341)
T PRK12439 8 PKVVVLGGG-----------------SWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRAT-T 69 (341)
T ss_pred CeEEEECCC-----------------HHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEE-C
Confidence 478889994 4555555554434567888888888766654211 00111 122221 2
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 241 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv 241 (294)
|..+. ....|+||+-.+.....+.++.+.+.++++..++
T Consensus 70 d~~~a---------~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 70 DFAEA---------ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred CHHHH---------HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence 22211 2467999998887778889999999998886444
No 477
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=77.17 E-value=15 Score=38.38 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=57.0
Q ss_pred CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199 (294)
Q Consensus 121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l 199 (294)
.+|+=+|+ |..+..+++.+.. +-.++.+|.|++.++.+++ .| .+++.||+.+.
T Consensus 401 ~~vII~G~-----------------Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~- 454 (621)
T PRK03562 401 PRVIIAGF-----------------GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRM- 454 (621)
T ss_pred CcEEEEec-----------------ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCH-
Confidence 58999999 5556666665543 4689999999999887765 23 56889998753
Q ss_pred HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
.-+.+.+ -++.|.+++-.+........-...+.+.|+-.+++
T Consensus 455 ~~L~~ag-i~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 455 DLLESAG-AAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred HHHHhcC-CCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 2222112 45788887655432222222222344455544443
No 478
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=77.11 E-value=36 Score=31.25 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=58.1
Q ss_pred hhhCCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 116 QILGAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 116 ~~~~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
+...+.+++=.| +|.+ |..++.+++.. +.++++++.+++..+.+ +..|...-+.....+
T Consensus 137 ~~~~g~~vlI~g~~g~i--------------g~~~~~lak~~--G~~v~~~~~~~~~~~~~----~~~g~~~~~~~~~~~ 196 (327)
T PRK10754 137 EIKPDEQFLFHAAAGGV--------------GLIACQWAKAL--GAKLIGTVGSAQKAQRA----KKAGAWQVINYREEN 196 (327)
T ss_pred CCCCCCEEEEEeCCcHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHH----HHCCCCEEEcCCCCc
Confidence 344556777665 3331 66667777776 57899999988876655 345653222221112
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
..+.+..+ .....+|.+|--.+. ..+...++.++++|.++.
T Consensus 197 ~~~~~~~~---~~~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~ 237 (327)
T PRK10754 197 IVERVKEI---TGGKKVRVVYDSVGK----DTWEASLDCLQRRGLMVS 237 (327)
T ss_pred HHHHHHHH---cCCCCeEEEEECCcH----HHHHHHHHHhccCCEEEE
Confidence 22222222 123468987743332 345567888999999885
No 479
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=77.05 E-value=28 Score=34.31 Aligned_cols=114 Identities=13% Similarity=0.204 Sum_probs=64.5
Q ss_pred HHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCCh--------HHHHHHHHHHHH
Q 022597 111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDA--------RSLEVAKKYYER 181 (294)
Q Consensus 111 L~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~--------~~~~~A~~~~~~ 181 (294)
+........+++++=||+ |+.++.++..+. .+.+|+.++..+ +..+...+.+++
T Consensus 139 l~~~l~~~~~~~vvViGg-----------------G~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~ 201 (438)
T PRK13512 139 IDQFIKANQVDKALVVGA-----------------GYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDK 201 (438)
T ss_pred HHHHHhhcCCCEEEEECC-----------------CHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHh
Confidence 333333345679999997 778888887764 356899998654 444566677777
Q ss_pred hCCC----CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597 182 AGVS----HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246 (294)
Q Consensus 182 ~gl~----~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl 246 (294)
.|+. .+++-+.++... + .++..-.+|.|++-.+.....++++..--.+.++|.+.+|+-+
T Consensus 202 ~gI~i~~~~~v~~i~~~~v~----~-~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~ 265 (438)
T PRK13512 202 REIPYRLNEEIDAINGNEVT----F-KSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKF 265 (438)
T ss_pred cCCEEEECCeEEEEeCCEEE----E-CCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCc
Confidence 6652 112212111000 0 1122246899988776444445555442124566777777643
No 480
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=77.04 E-value=35 Score=30.53 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=59.8
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
....++.++-.|+..++ |.....++... +.+++.++.+++..+.+++ .|...-+.....+.
T Consensus 136 ~~~~~~~vli~g~~~~~-------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~ 196 (323)
T cd08241 136 RLQPGETVLVLGAAGGV-------------GLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDL 196 (323)
T ss_pred CCCCCCEEEEEcCCchH-------------HHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccH
Confidence 34456789988983311 66666666664 5789999999887666533 35432222222222
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+.+..+ .....+|.++...+. .....+.+.++++|.++.-
T Consensus 197 ~~~i~~~---~~~~~~d~v~~~~g~----~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 197 RERVKAL---TGGRGVDVVYDPVGG----DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred HHHHHHH---cCCCCcEEEEECccH----HHHHHHHHhhccCCEEEEE
Confidence 2223222 123469988854432 3455677888999988753
No 481
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=76.98 E-value=0.6 Score=42.68 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=68.8
Q ss_pred CCCCCCHHHHH-HHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHH
Q 022597 99 SQMQVSPDQAQ-LLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVA 175 (294)
Q Consensus 99 ~~~~v~~~~~~-lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A 175 (294)
+-...+++|=+ +|..--.. ..+.++||+|+|. |-.+..++-.. .+|++.|+|..+...
T Consensus 89 sMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGd---------------Geit~~m~p~f---eevyATElS~tMr~r- 149 (288)
T KOG3987|consen 89 SMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGD---------------GEITLRMAPTF---EEVYATELSWTMRDR- 149 (288)
T ss_pred ceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCC---------------cchhhhhcchH---HHHHHHHhhHHHHHH-
Confidence 33456887732 22221111 2347999999999 99988887655 468999998887654
Q ss_pred HHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc-CC--ccchHHHHHHHHhcccC-CeEEEEeccc
Q 022597 176 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD-AE--KRMYQEYFELLLQLIRV-GGIIVIDNVL 246 (294)
Q Consensus 176 ~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD-~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl 246 (294)
++..++ .++. ..+.+.. +-+||+|..- .- .-+.-.+++.++..|+| +|.+|+.=|+
T Consensus 150 ---L~kk~y----nVl~--~~ew~~t------~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 150 ---LKKKNY----NVLT--EIEWLQT------DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred ---HhhcCC----ceee--ehhhhhc------CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 333333 2221 1233221 3468877421 11 12345778888889999 8988887666
No 482
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=76.85 E-value=35 Score=32.63 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=58.8
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
.+...+++||=+|+|.+ |...+.+++.. +. +|+.++.+++..+.++ ..|..+-+.....
T Consensus 186 ~~~~~g~~VlV~G~g~v--------------G~~~~~~a~~~--G~~~Vi~~~~~~~~~~~a~----~lGa~~~i~~~~~ 245 (373)
T cd08299 186 AKVTPGSTCAVFGLGGV--------------GLSAIMGCKAA--GASRIIAVDINKDKFAKAK----ELGATECINPQDY 245 (373)
T ss_pred cCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCceEeccccc
Confidence 34456678888888653 66666666665 45 7999999988776663 3455322222211
Q ss_pred c--hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHH-hcccCCeEEEEeccc
Q 022597 194 L--AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL-QLIRVGGIIVIDNVL 246 (294)
Q Consensus 194 d--a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~-~lLkpgG~ivid~vl 246 (294)
+ ..+.+..+. .+.+|+++--.+. ...+.... ..+++||.++.-...
T Consensus 246 ~~~~~~~v~~~~----~~~~d~vld~~g~---~~~~~~~~~~~~~~~G~~v~~g~~ 294 (373)
T cd08299 246 KKPIQEVLTEMT----DGGVDFSFEVIGR---LDTMKAALASCHEGYGVSVIVGVP 294 (373)
T ss_pred chhHHHHHHHHh----CCCCeEEEECCCC---cHHHHHHHHhhccCCCEEEEEccC
Confidence 1 222233321 2468977654432 23344433 345678887765443
No 483
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=76.68 E-value=77 Score=30.86 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHHh
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERA 182 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~~ 182 (294)
.|....+-..++...++..++=.++|+ +...+.+...+.++.+|+..+..-. .........+..
T Consensus 51 ~pt~~~L~~~lA~l~g~~~~i~~~sg~---------------~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~ 115 (386)
T PRK08045 51 NPTRDVVQRALAELEGGAGAVLTNTGM---------------SAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG 115 (386)
T ss_pred CccHHHHHHHHHHHhCCCeEEEECCHH---------------HHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhC
Confidence 345556666666666665666666655 4444444434555677777766544 344444444433
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccC-CeEEEEecccCCC
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRV-GGIIVIDNVLWHG 249 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkp-gG~ivid~vl~~g 249 (294)
+. .+.++...-.+.++... ...-++||+..+. .....-++.+.++.+. |.++++|+....+
T Consensus 116 gi--~v~~vd~~d~e~l~~~l----~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 116 CY--RVLFVDQGDEQALRAAL----AEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred Ce--EEEEeCCCCHHHHHHhc----ccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 32 24443221122233322 2356888876431 1111112333333333 6778889886443
No 484
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=76.63 E-value=26 Score=32.42 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=61.0
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
...++++||=.|+|. + |...+.+++.. +.+ +++++.+++..+.++ ..|...-+.....+
T Consensus 162 ~~~~g~~VlV~g~g~-v-------------g~~~~~la~~~--g~~~v~~~~~s~~~~~~~~----~~g~~~~~~~~~~~ 221 (343)
T cd08235 162 GIKPGDTVLVIGAGP-I-------------GLLHAMLAKAS--GARKVIVSDLNEFRLEFAK----KLGADYTIDAAEED 221 (343)
T ss_pred CCCCCCEEEEECCCH-H-------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHH----HhCCcEEecCCccC
Confidence 345567888888753 2 77777777775 456 888888988776653 34542211111112
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
..+.+..+ .....+|++|--... ...+..+.+.|+++|.++.-.
T Consensus 222 ~~~~i~~~---~~~~~vd~vld~~~~---~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 222 LVEKVREL---TDGRGADVVIVATGS---PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred HHHHHHHH---hCCcCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEEe
Confidence 22222222 123458988854432 245667788899999988643
No 485
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=76.62 E-value=26 Score=32.58 Aligned_cols=100 Identities=19% Similarity=0.298 Sum_probs=58.5
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
++++|+-.|+|.+ |..+..+++..+ . ++++++.+++..+.++ +.|...-+.....+..+
T Consensus 163 ~g~~vlV~~~g~v--------------g~~~~~la~~~G--~~~v~~~~~~~~~~~~~~----~lg~~~~~~~~~~~~~~ 222 (341)
T PRK05396 163 VGEDVLITGAGPI--------------GIMAAAVAKHVG--ARHVVITDVNEYRLELAR----KMGATRAVNVAKEDLRD 222 (341)
T ss_pred CCCeEEEECCCHH--------------HHHHHHHHHHcC--CCEEEEEcCCHHHHHHHH----HhCCcEEecCccccHHH
Confidence 4567766777543 667777787763 4 6788887887665443 44543212222222223
Q ss_pred hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
.+..+ .....+|.||--.+. ...++.+.+.|+++|.++.-.
T Consensus 223 ~~~~~---~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 223 VMAEL---GMTEGFDVGLEMSGA---PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred HHHHh---cCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence 33222 123568988763432 345667788999999988753
No 486
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=76.55 E-value=35 Score=32.45 Aligned_cols=77 Identities=19% Similarity=0.121 Sum_probs=46.6
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH-HHHHHHHHhCCCCcEEEEEcchhh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE-VAKKYYERAGVSHKVKIKHGLAAD 197 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~-~A~~~~~~~gl~~~v~~~~gda~~ 197 (294)
.+.+|.=||+|.+ |......+...+-..+++.+|++++.++ .+........+..++++..+++.+
T Consensus 5 ~~~ki~iiGaG~v--------------G~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~ 70 (315)
T PRK00066 5 QHNKVVLVGDGAV--------------GSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD 70 (315)
T ss_pred CCCEEEEECCCHH--------------HHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH
Confidence 4568999999774 5544443333332348999999887653 344333333333457776665543
Q ss_pred hHHHHhhcCCCCceeEEEEcCC
Q 022597 198 SLKALILNGEASSYDFAFVDAE 219 (294)
Q Consensus 198 ~l~~l~~~~~~~~fD~vfiD~~ 219 (294)
. ...|+|++-++
T Consensus 71 ~----------~~adivIitag 82 (315)
T PRK00066 71 C----------KDADLVVITAG 82 (315)
T ss_pred h----------CCCCEEEEecC
Confidence 2 56899988654
No 487
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=76.44 E-value=40 Score=30.14 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=58.4
Q ss_pred HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 194 (294)
Q Consensus 115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd 194 (294)
.....+++++=.|+..++ |...+.++.+. +.+++.++.+++..+.++ ..|....+.....+
T Consensus 140 ~~~~~g~~vlI~g~~~~~-------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~ 200 (325)
T cd08253 140 AGAKAGETVLVHGGSGAV-------------GHAAVQLARWA--GARVIATASSAEGAELVR----QAGADAVFNYRAED 200 (325)
T ss_pred hCCCCCCEEEEEcCCchH-------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCEEEeCCCcC
Confidence 344566788888864312 55555666654 578999999888766653 34543222221112
Q ss_pred hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
..+.+... .....+|+++-..+.. .++...+.++++|.++.
T Consensus 201 ~~~~~~~~---~~~~~~d~vi~~~~~~----~~~~~~~~l~~~g~~v~ 241 (325)
T cd08253 201 LADRILAA---TAGQGVDVIIEVLANV----NLAKDLDVLAPGGRIVV 241 (325)
T ss_pred HHHHHHHH---cCCCceEEEEECCchH----HHHHHHHhhCCCCEEEE
Confidence 22222222 1235799998654432 24555678888888774
No 488
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=76.37 E-value=32 Score=31.37 Aligned_cols=102 Identities=8% Similarity=0.051 Sum_probs=59.5
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
...+.+++=.|...+. |.....++++. +.+++.++.+++..+.+++ .|...-+.....+
T Consensus 138 ~~~~~~vlI~ga~g~~-------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~-- 196 (334)
T PTZ00354 138 VKKGQSVLIHAGASGV-------------GTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEE-- 196 (334)
T ss_pred CCCCCEEEEEcCCchH-------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChh--
Confidence 3456688888853211 77777777776 4677778888887766643 4553212111111
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
+....+........+|.+|-..+ ...++.+.+.|+++|.++.-
T Consensus 197 ~~~~~~~~~~~~~~~d~~i~~~~----~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 197 GFAPKVKKLTGEKGVNLVLDCVG----GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred HHHHHHHHHhCCCCceEEEECCc----hHHHHHHHHHhccCCeEEEE
Confidence 12222222122356999985443 24667788899999998853
No 489
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.91 E-value=43 Score=30.14 Aligned_cols=84 Identities=12% Similarity=-0.010 Sum_probs=45.6
Q ss_pred CCCeEEEEccc-cccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 119 GAQRCIEVGVY-TVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 119 ~~~~vLEiG~g-~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
.++++|-.|.+ + +..+.++++.+. .+.+|+.++.+.+..+..++..++.. ..++.++..|..
T Consensus 6 ~~k~~lItGa~~s---------------~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~ 69 (257)
T PRK08594 6 EGKTYVVMGVANK---------------RSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVT 69 (257)
T ss_pred CCCEEEEECCCCC---------------CCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCC
Confidence 45688999975 3 335566666553 46788888665332223333333321 245777777765
Q ss_pred hh--HHHHhhcC--CCCceeEEEEcC
Q 022597 197 DS--LKALILNG--EASSYDFAFVDA 218 (294)
Q Consensus 197 ~~--l~~l~~~~--~~~~fD~vfiD~ 218 (294)
+. +..+...- ..+++|.++..+
T Consensus 70 d~~~v~~~~~~~~~~~g~ld~lv~na 95 (257)
T PRK08594 70 SDEEITACFETIKEEVGVIHGVAHCI 95 (257)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEECc
Confidence 42 22222110 136789887654
No 490
>PRK07582 cystathionine gamma-lyase; Validated
Probab=75.90 E-value=40 Score=32.48 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCCh-HHHHHHHHHHHHh
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERA 182 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~-~~~~~A~~~~~~~ 182 (294)
.|...++-..+++.. +..++-+|+|+ ......+...++++.+|+..+... .....++..++..
T Consensus 50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~---------------~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~ 113 (366)
T PRK07582 50 NPTWRALEAALGELE-GAEALVFPSGM---------------AAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPL 113 (366)
T ss_pred CccHHHHHHHHHHHc-CCCEEEECCHH---------------HHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcC
Confidence 344455555555555 45677778866 433333333355567788776554 3345555556655
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhccc-CCeEEEEeccc
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIR-VGGIIVIDNVL 246 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLk-pgG~ivid~vl 246 (294)
|. ++.++. ..+..... ....++|++..+. ......++.+.++.+ .|..+++|+..
T Consensus 114 G~--~v~~v~--~~~~~~~~-----~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 114 GV--TVREAP--TAGMAEAA-----LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred eE--EEEEEC--CCChHHHh-----ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 54 244433 22211111 2456788876431 111223444544443 46778889875
No 491
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=75.87 E-value=18 Score=36.80 Aligned_cols=99 Identities=16% Similarity=0.236 Sum_probs=61.9
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEE------EEeCChHHHHHHHHHHHHhCCCCcE
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLV------ACERDARSLEVAKKYYERAGVSHKV 188 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~------~id~~~~~~~~A~~~~~~~gl~~~v 188 (294)
..+.+++|+=||| |..+.+.|..+.. +..|+ +||.+.+..+.|. ..|+.
T Consensus 32 ~~LkgKtIaIIGy-----------------GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~----~dGF~--- 87 (487)
T PRK05225 32 SYLKGKKIVIVGC-----------------GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT----ENGFK--- 87 (487)
T ss_pred HHhCCCEEEEEcc-----------------CHHHHHHhCCCccccceeEEeccccccccccchHHHHH----hcCCc---
Confidence 4567789999999 5455555555543 33555 4555555554433 34552
Q ss_pred EEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe---cccCCCc
Q 022597 189 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID---NVLWHGK 250 (294)
Q Consensus 189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid---~vl~~g~ 250 (294)
+ ++..+.+ ...|+|++-.+......+.+.+.+.|+||..+.+. ||.+.|.
T Consensus 88 -v--~~~~Ea~---------~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~~i 140 (487)
T PRK05225 88 -V--GTYEELI---------PQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEVGE 140 (487)
T ss_pred -c--CCHHHHH---------HhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeCce
Confidence 1 3333332 46799987766445666778999999999999873 4555443
No 492
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=75.81 E-value=73 Score=30.99 Aligned_cols=119 Identities=17% Similarity=0.203 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHH-HHHHHHHHHhC
Q 022597 105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSL-EVAKKYYERAG 183 (294)
Q Consensus 105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~-~~A~~~~~~~g 183 (294)
|...++=..++...++..++-+++|+ ......+...++++.+|+..+..-... ...+. ++..|
T Consensus 53 p~~~~lE~~lA~l~g~~~~l~~~sG~---------------~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~-~~~~g 116 (385)
T PRK08574 53 PTLRPLEEALAKLEGGVDALAFNSGM---------------AAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKS-LEKFG 116 (385)
T ss_pred ccHHHHHHHHHHHhCCCcEEEeCCHH---------------HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-hhccC
Confidence 34444445555556666777777755 333333333455566776655544332 22322 34444
Q ss_pred CCCcEEEEEcchhhhHHHHhhcCCCC-ceeEEEEcCCc--cchHHHHHHHHhccc-CCeEEEEeccc
Q 022597 184 VSHKVKIKHGLAADSLKALILNGEAS-SYDFAFVDAEK--RMYQEYFELLLQLIR-VGGIIVIDNVL 246 (294)
Q Consensus 184 l~~~v~~~~gda~~~l~~l~~~~~~~-~fD~vfiD~~~--~~~~~~~~~~~~lLk-pgG~ivid~vl 246 (294)
. ++.+...|. +.+.+.. .. +.++|++..+. .....-++.+.++.+ .|..+++|+..
T Consensus 117 ~--~v~~~~~d~-~~l~~~i----~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~ 176 (385)
T PRK08574 117 V--KVVLAYPST-EDIIEAI----KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTF 176 (385)
T ss_pred c--EEEEECCCH-HHHHHhc----CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCC
Confidence 3 344433343 2333332 23 56888876431 111111334444443 36677888885
No 493
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=75.56 E-value=33 Score=30.60 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=58.7
Q ss_pred hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597 116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 195 (294)
Q Consensus 116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda 195 (294)
...++++++=.|+..++ |.....+++.. +.+++.++.+++..+.+++ .|...-+.....+.
T Consensus 136 ~~~~~~~vlv~g~~~~i-------------g~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~ 196 (323)
T cd05276 136 GLKAGETVLIHGGASGV-------------GTAAIQLAKAL--GARVIATAGSEEKLEACRA----LGADVAINYRTEDF 196 (323)
T ss_pred CCCCCCEEEEEcCcChH-------------HHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCchhH
Confidence 34456788888864311 66666666665 5789999998887766533 34422111111122
Q ss_pred hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597 196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243 (294)
Q Consensus 196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid 243 (294)
.+.+..+ .....+|++|...+. ..+....+.++++|.++.-
T Consensus 197 ~~~~~~~---~~~~~~d~vi~~~g~----~~~~~~~~~~~~~g~~i~~ 237 (323)
T cd05276 197 AEEVKEA---TGGRGVDVILDMVGG----DYLARNLRALAPDGRLVLI 237 (323)
T ss_pred HHHHHHH---hCCCCeEEEEECCch----HHHHHHHHhhccCCEEEEE
Confidence 2222222 113579998865542 2255677888999988753
No 494
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=75.51 E-value=26 Score=32.39 Aligned_cols=103 Identities=22% Similarity=0.255 Sum_probs=54.9
Q ss_pred hhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-
Q 022597 116 QILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG- 193 (294)
Q Consensus 116 ~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g- 193 (294)
.+.++++||=.|+ |.+ |..++.++++. +.+++++..+.+..+.-++.++..|...-+.....
T Consensus 143 ~~~~g~~vlI~g~~g~v--------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 206 (341)
T cd08290 143 KLQPGDWVIQNGANSAV--------------GQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELR 206 (341)
T ss_pred ccCCCCEEEEccchhHH--------------HHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccc
Confidence 4456678888875 332 77777777776 46665554444212222333444555432222111
Q ss_pred --chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597 194 --LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242 (294)
Q Consensus 194 --da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi 242 (294)
+..+.+..+ . .+.+|+|+--.+.. .+..+.+.|+++|.++.
T Consensus 207 ~~~~~~~i~~~---~-~~~~d~vld~~g~~----~~~~~~~~l~~~G~~v~ 249 (341)
T cd08290 207 SLLATELLKSA---P-GGRPKLALNCVGGK----SATELARLLSPGGTMVT 249 (341)
T ss_pred cccHHHHHHHH---c-CCCceEEEECcCcH----hHHHHHHHhCCCCEEEE
Confidence 222223322 1 22699988544322 24456788999998885
No 495
>PRK07050 cystathionine beta-lyase; Provisional
Probab=75.39 E-value=73 Score=31.11 Aligned_cols=126 Identities=16% Similarity=0.164 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHH-HHHHHHHHHH
Q 022597 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYER 181 (294)
Q Consensus 103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~-~~~A~~~~~~ 181 (294)
-.|...++-..+++..+++.++=..+|+ ....+.+...++++.+|+..+..-.. ...+....+.
T Consensus 63 ~~pt~~~Le~~lA~l~g~~~~l~~~sgt---------------~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 127 (394)
T PRK07050 63 ATPTSLALAQRLAEIEGGRHALLQPSGL---------------AAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARD 127 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeccHH---------------HHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHh
Confidence 4566667777777777877888777765 44444443335667788777654433 3334445556
Q ss_pred hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccCCC
Q 022597 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHG 249 (294)
Q Consensus 182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~~g 249 (294)
.|.. +.++..+..+.++..+ ...-.+|++..+ .......++.+.++.+. |-.+++|+....|
T Consensus 128 ~Gi~--v~~vd~~~~~~l~~~i----~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 128 FGIT--VRFYDPLIGAGIADLI----QPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred cCeE--EEEECCCCHHHHHHhc----CCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccc
Confidence 5652 4444221122233332 234577876543 22244555666655554 5567788875443
No 496
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=75.04 E-value=7.4 Score=40.79 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=60.2
Q ss_pred hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch-
Q 022597 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA- 195 (294)
Q Consensus 117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda- 195 (294)
+.++..|||+||.. |.+..-.++.+|.++-|+|+|+-|-- .+.+-+++ ..|.
T Consensus 42 l~~a~~vlDLcaAP---------------G~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~-v~dIt 94 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAP---------------GGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTL-VEDIT 94 (780)
T ss_pred ccccchheeeccCC---------------cHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchh-hhhhh
Confidence 45677899999999 77777778888988999999997731 12222222 2222
Q ss_pred hhhHHH-HhhcCCCCceeEEEEcCCcc--------ch------HHHHHHHHhcccCCeEEEEecc
Q 022597 196 ADSLKA-LILNGEASSYDFAFVDAEKR--------MY------QEYFELLLQLIRVGGIIVIDNV 245 (294)
Q Consensus 196 ~~~l~~-l~~~~~~~~fD~vfiD~~~~--------~~------~~~~~~~~~lLkpgG~ivid~v 245 (294)
.+.... +.......+.|+|+.|..+. .| ...+.++...|+.||.+ ++.+
T Consensus 95 td~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f-vtkv 158 (780)
T KOG1098|consen 95 TDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF-VTKV 158 (780)
T ss_pred HHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc-cccc
Confidence 222211 11111145679999886421 11 23344455789999994 4444
No 497
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.98 E-value=6.6 Score=38.66 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597 110 LLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK 177 (294)
Q Consensus 110 lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~ 177 (294)
......++.+..+||-|.+| |.-++.++..-| .+|++||+||.+....+=
T Consensus 26 vD~~aL~i~~~d~vl~ItSa----------------G~N~L~yL~~~P--~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSA----------------GCNALDYLLAGP--KRIHAVDLNPAQNALLEL 75 (380)
T ss_pred HHHHHhCCCCCCeEEEEccC----------------CchHHHHHhcCC--ceEEEEeCCHHHHHHHHH
Confidence 34445555666799999886 778888866654 899999999998766543
No 498
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=74.91 E-value=28 Score=32.05 Aligned_cols=95 Identities=21% Similarity=0.184 Sum_probs=59.5
Q ss_pred HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597 114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 193 (294)
Q Consensus 114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g 193 (294)
..++.++.++|=.|+|.+ |...+.++++. +.+++.++.+++..+.+ ++.|... ++..
T Consensus 162 ~~~~~~~~~vlV~g~g~v--------------g~~~~~la~~~--g~~v~~~~~~~~~~~~~----~~~g~~~---~~~~ 218 (329)
T cd08298 162 LAGLKPGQRLGLYGFGAS--------------AHLALQIARYQ--GAEVFAFTRSGEHQELA----RELGADW---AGDS 218 (329)
T ss_pred hhCCCCCCEEEEECCcHH--------------HHHHHHHHHHC--CCeEEEEcCChHHHHHH----HHhCCcE---Eecc
Confidence 344556678887887653 66666666665 57899999888766555 3345421 1111
Q ss_pred chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597 194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244 (294)
Q Consensus 194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~ 244 (294)
+ +. ....+|.++.-... ...++.+.+.|+++|.++.-.
T Consensus 219 ~--~~--------~~~~vD~vi~~~~~---~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 219 D--DL--------PPEPLDAAIIFAPV---GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred C--cc--------CCCcccEEEEcCCc---HHHHHHHHHHhhcCCEEEEEc
Confidence 1 10 03468988754322 246788899999999998754
No 499
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.66 E-value=19 Score=35.80 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=45.6
Q ss_pred CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChH-HHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAA 196 (294)
Q Consensus 119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~-~~~~A~~~~~~~gl~~~v~~~~gda~ 196 (294)
.+++|+=+|. |.+++.+|..+. .+.+|+.+|.++. ......+.++..| +++..+...
T Consensus 15 ~~~~v~viG~-----------------G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~~~ 73 (480)
T PRK01438 15 QGLRVVVAGL-----------------GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG----ATVRLGPGP 73 (480)
T ss_pred CCCEEEEECC-----------------CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC----CEEEECCCc
Confidence 4568999999 556665555543 3678999996653 3333344566554 566666543
Q ss_pred hhHHHHhhcCCCCceeEEEEcCCc
Q 022597 197 DSLKALILNGEASSYDFAFVDAEK 220 (294)
Q Consensus 197 ~~l~~l~~~~~~~~fD~vfiD~~~ 220 (294)
+ . ...+|+|++.++.
T Consensus 74 ~----~-----~~~~D~Vv~s~Gi 88 (480)
T PRK01438 74 T----L-----PEDTDLVVTSPGW 88 (480)
T ss_pred c----c-----cCCCCEEEECCCc
Confidence 3 1 3568999987763
No 500
>PRK05968 hypothetical protein; Provisional
Probab=74.56 E-value=81 Score=30.67 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCCh-HHHHHHHHHHHHh
Q 022597 104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERA 182 (294)
Q Consensus 104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~-~~~~~A~~~~~~~ 182 (294)
.|...++=..+++..+.+..+=+++|+ ......+...+.++.+|+..+..- .......+.++..
T Consensus 62 ~p~~~~le~~lA~l~g~~~av~~~sG~---------------~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 126 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAEDARGFASGM---------------AAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRM 126 (389)
T ss_pred ChhHHHHHHHHHHHhCCCcEEEECCHH---------------HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc
Confidence 455666667777777777776666655 333223332345567777766432 2333444556666
Q ss_pred CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccCC
Q 022597 183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWH 248 (294)
Q Consensus 183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~~ 248 (294)
|.. +.++..+-.+.++... .+..+|++..+ .......++.+.++.+. |-.+++|+....
T Consensus 127 G~~--v~~vd~~d~~~l~~~i-----~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~ 188 (389)
T PRK05968 127 GVE--VDYVDGRDEEAVAKAL-----PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWAS 188 (389)
T ss_pred Cce--EEEeCCCCHHHHHHhc-----ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 653 5554443233343332 23567876543 22233555666666555 556788886533
Done!