Query 022599
Match_columns 294
No_of_seqs 182 out of 1257
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 08:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022599.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022599hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 10.7 2.2E+02 0.016 22.8 6.2 60 174-239 4-63 (248)
2 d1pv7a_ f.38.1.2 (A:) Lactose 4.1 7.1E+02 0.052 18.4 6.0 19 221-239 283-301 (417)
3 d2h5na1 a.287.1.2 (A:1-132) Hy 3.1 4.5E+02 0.033 18.1 3.2 34 226-263 83-116 (132)
4 d1v54l_ f.23.6.1 (L:) Mitochon 2.1 7.4E+02 0.054 14.5 3.8 30 91-123 4-33 (46)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 2.0 6.2E+02 0.045 13.4 2.9 18 112-129 10-27 (32)
6 d1uptb_ a.193.1.1 (B:) Golgi a 1.5 5.1E+02 0.037 16.1 1.2 21 212-232 10-30 (58)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 1.3 8.5E+02 0.062 12.4 2.9 18 252-269 3-20 (27)
8 d1rk8c_ b.72.3.1 (C:) Pym (Wit 1.2 3.6E+02 0.027 14.8 -0.2 13 97-109 16-28 (33)
9 d1us0a_ c.1.7.1 (A:) Aldose re 1.1 5.5E+02 0.04 19.9 0.8 10 1-10 1-10 (314)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 0.9 2.3E+03 0.17 15.4 16.0 190 103-292 147-385 (447)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.74 E-value=2.2e+02 Score=22.85 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhHHHHHHHHHHhcccCChhhHHHHhHhhhhh
Q 022599 174 LLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGV 239 (294)
Q Consensus 174 ~llpvgl~~~l~~~~~n~sl~~vsvs~~~iikal~Pvft~lls~l~lgek~s~~~~lsllliv~GV 239 (294)
+++.++++..+..+.....+..-+..+..+ .-+.+.++.++++.+|.-..+| +.|.++++
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~ky--i~PG~~~l 63 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRY--VYPGMAGM 63 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceeh--hhhHHHHH
Confidence 366777777776666555555555544432 3345566778888887766666 33444443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.07 E-value=7.1e+02 Score=18.40 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=8.6
Q ss_pred cccCChhhHHHHhHhhhhh
Q 022599 221 GQQLPLTLWLSLAPVVIGV 239 (294)
Q Consensus 221 gek~s~~~~lsllliv~GV 239 (294)
.+|...+..+.+...+.++
T Consensus 283 ~~r~~~~~~~~~~~~~~~~ 301 (417)
T d1pv7a_ 283 INRIGGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhHHHHHH
Confidence 3455555544443333333
No 3
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.15 E-value=4.5e+02 Score=18.06 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=22.8
Q ss_pred hhhHHHHhHhhhhheecccccccccHHHHHHHHHHHHH
Q 022599 226 LTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNIS 263 (294)
Q Consensus 226 ~~~~lsllliv~GV~la~~~e~~fn~~G~ilallS~v~ 263 (294)
+.++.+ .-.||++++.+|.+-|-... |.+++.+|
T Consensus 83 rkkyva---sylgvimasdgdiddnelal-wtlistlc 116 (132)
T d2h5na1 83 RKKYVA---SYLGVIMASDGDIDDNELAL-WTLISTLC 116 (132)
T ss_dssp HHHHHH---HHHHHHSCBTTBCCHHHHHH-HHHHHHHH
T ss_pred HHHHHH---HHhhheeccCCCCCccHhHH-HHHHHHHh
Confidence 445554 56799999988888775443 55666554
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.08 E-value=7.4e+02 Score=14.51 Aligned_cols=30 Identities=7% Similarity=0.145 Sum_probs=14.7
Q ss_pred CCCCCcCCcccccccchhHHHHHHHHHHHHHHH
Q 022599 91 DSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVI 123 (294)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~i~~w~~~si~ 123 (294)
++.|...+-..-.| +++.+.+.+++..+..
T Consensus 4 eGPG~NLPFsv~Nk---~rLla~m~~~fGsgfa 33 (46)
T d1v54l_ 4 EGPGKNIPFSVENK---WRLLAMMTLFFGSGFA 33 (46)
T ss_dssp CSTTTSSSSCCSSH---HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccchhH---HHHHHHHHHHHhcccc
Confidence 34455555554433 3444555555555443
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.00 E-value=6.2e+02 Score=13.36 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022599 112 FFFFMWYFLNVIFNILNK 129 (294)
Q Consensus 112 ~~i~~w~~~si~~~i~NK 129 (294)
.|+.+++...+++.+..|
T Consensus 10 vfialffgiavgiifaik 27 (32)
T d2e74e1 10 VFIALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhheeeEE
Confidence 444455555555544444
No 6
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.49 E-value=5.1e+02 Score=16.06 Aligned_cols=21 Identities=0% Similarity=-0.061 Sum_probs=14.3
Q ss_pred HHHHHHHHhcccCChhhHHHH
Q 022599 212 NAAASQFILGQQLPLTLWLSL 232 (294)
Q Consensus 212 t~lls~l~lgek~s~~~~lsl 232 (294)
.+++.|...+|..+..++++.
T Consensus 10 nvLfeYMmG~E~~tlaKVi~a 30 (58)
T d1uptb_ 10 KVLFEYMMGRETKTMAKVITT 30 (58)
T ss_dssp HHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCcchhHHHHHHHH
Confidence 356777777777777766553
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.28 E-value=8.5e+02 Score=12.38 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022599 252 TGFISAMISNISFTYRSI 269 (294)
Q Consensus 252 ~G~ilallS~v~~al~~V 269 (294)
.|.+.+-++.++++.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 466666667777766654
No 8
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=1.16 E-value=3.6e+02 Score=14.77 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=8.3
Q ss_pred CCcccccccchhH
Q 022599 97 APVRFFDRYPALV 109 (294)
Q Consensus 97 ~~~~~~~~~~~l~ 109 (294)
.+.|-|+|.+.++
T Consensus 16 RpDGtWRK~rrvk 28 (33)
T d1rk8c_ 16 RPDGTWRKARRVK 28 (33)
T ss_dssp CTTSCEECCEECC
T ss_pred CCCCccccceecc
Confidence 4566788776653
No 9
>d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.12 E-value=5.5e+02 Score=19.89 Aligned_cols=10 Identities=40% Similarity=0.504 Sum_probs=7.2
Q ss_pred Cccccccccc
Q 022599 1 MESRVLSRAT 10 (294)
Q Consensus 1 ~~~~~~~~~~ 10 (294)
||+|++....
T Consensus 1 ~~~r~~~~tG 10 (314)
T d1us0a_ 1 MASRILLNNG 10 (314)
T ss_dssp CCSEEECTTS
T ss_pred CCCceECCCc
Confidence 8888877643
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=0.86 E-value=2.3e+03 Score=15.43 Aligned_cols=190 Identities=8% Similarity=-0.047 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---------------
Q 022599 103 DRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPI--------------- 167 (294)
Q Consensus 103 ~~~~~l~~~~~i~~w~~~si~~~i~NK~vL~~fp~Pl~Lt~~q~~~~~lllli~~~~g~~~~~~l--------------- 167 (294)
++.|....+.+-..+...........-.+...+..-.........+..+...+.+..-...+...
T Consensus 147 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (447)
T d1pw4a_ 147 QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD 226 (447)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----
T ss_pred hhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccc
Q ss_pred ---------------------ChHHHHHHHHHHHHHHHHHHHHHHhhccc------chhHHHHHHhhhhHHHHHHHHH--
Q 022599 168 ---------------------DSKLLKLLIPVAVCHALGHVTSNVSFAAV------AVSFTHTIKALEPFFNAAASQF-- 218 (294)
Q Consensus 168 ---------------------s~~~~~~llpvgl~~~l~~~~~n~sl~~v------svs~~~iikal~Pvft~lls~l-- 218 (294)
++..+.......+.+.......++...|. +.......-....+..++...+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (447)
T d1pw4a_ 227 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCG 306 (447)
T ss_dssp ---------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhh
Q ss_pred -----HhcccCChhhHHHHhHhhhhheecccccccccHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhcC
Q 022599 219 -----ILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMVIFYETLCCSSCKAAAN 292 (294)
Q Consensus 219 -----~lgek~s~~~~lsllliv~GV~la~~~e~~fn~~G~ilallS~v~~al~~V~~Kk~l~~~~~~n~~a~~l~~~~ 292 (294)
+.+++........+..+..+..+......+..+...+..++..+..............+..+....+...|..|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 385 (447)
T d1pw4a_ 307 WMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 385 (447)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred hhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Done!