BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022600
         (294 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O75818|RPP40_HUMAN Ribonuclease P protein subunit p40 OS=Homo sapiens GN=RPP40 PE=1
           SV=3
          Length = 363

 Score = 34.3 bits (77), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 231 RNLGVEMLEANPLEVTPDVERRVSEGFKTWMGSSFLSSDEEDEPDDYL 278
           R+L   +L+++ LE TP+V  R  E F  W+G+ F + D  +EP++++
Sbjct: 215 RDLQCPVLQSSELEGTPEVSCRALELFD-WLGAVFSNVDLNNEPNNFI 261


>sp|E2JF22|PIEZ1_MOUSE Piezo-type mechanosensitive ion channel component 1 OS=Mus musculus
           GN=Piezo1 PE=2 SV=1
          Length = 2547

 Score = 34.3 bits (77), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 44  CIVVAVCTIVSLKIVFPSDYGR---RPFCSDVRLQPLQIN 80
           CI++    +  LKIV P +Y      PF ++  LQPL+IN
Sbjct: 858 CIIIVCKMLYQLKIVNPHEYSSNCTEPFPNNTNLQPLEIN 897


>sp|Q5N5A9|CYF_SYNP6 Apocytochrome f OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301
           / SAUG 1402/1) GN=petA PE=3 SV=1
          Length = 324

 Score = 32.0 bits (71), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 217 RKSAAVFDDGDSDGRNLGVEMLEANPLEVTPDVERRVSEGFKTWMGSSFLSSDEEDEPDD 276
           R S  V  DG   G N+G  ++  +  ++ P  E R+SE  K  +G+ + ++   D+ + 
Sbjct: 96  RSSQQVLGDGSKGGLNVGAVLMLPDGFKLAP--EDRISEELKEEIGNVYFTNYSADQENI 153

Query: 277 YLEAP 281
            L  P
Sbjct: 154 ILVGP 158


>sp|Q31NV8|CYF_SYNE7 Apocytochrome f OS=Synechococcus elongatus (strain PCC 7942)
           GN=petA PE=3 SV=1
          Length = 324

 Score = 32.0 bits (71), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 217 RKSAAVFDDGDSDGRNLGVEMLEANPLEVTPDVERRVSEGFKTWMGSSFLSSDEEDEPDD 276
           R S  V  DG   G N+G  ++  +  ++ P  E R+SE  K  +G+ + ++   D+ + 
Sbjct: 96  RSSQQVLGDGSKGGLNVGAVLMLPDGFKLAP--EDRISEELKEEIGNVYFTNYSADQENI 153

Query: 277 YLEAP 281
            L  P
Sbjct: 154 ILVGP 158


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,121,716
Number of Sequences: 539616
Number of extensions: 4675703
Number of successful extensions: 13632
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 13631
Number of HSP's gapped (non-prelim): 10
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)