Query 022600
Match_columns 294
No_of_seqs 15 out of 17
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 04:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07803 GSG-1: GSG1-like prot 65.5 19 0.00042 30.8 5.8 69 31-107 5-74 (118)
2 PF06930 DUF1282: Protein of u 54.9 14 0.0003 30.8 3.2 18 14-31 5-22 (170)
3 PF05478 Prominin: Prominin; 50.5 7.8 0.00017 40.2 1.2 81 100-188 407-489 (806)
4 PF03884 DUF329: Domain of unk 42.7 9.4 0.0002 28.7 0.3 14 61-75 16-29 (57)
5 TIGR00353 nrfE c-type cytochro 41.9 86 0.0019 32.3 7.0 73 103-213 112-206 (576)
6 PRK00418 DNA gyrase inhibitor; 39.4 13 0.00028 28.6 0.6 14 61-75 20-33 (62)
7 PRK05529 cell division protein 39.1 42 0.00091 30.4 3.9 45 4-49 7-51 (255)
8 PRK01343 zinc-binding protein; 38.2 14 0.00031 28.0 0.7 14 63-77 21-34 (57)
9 COG4993 Gcd Glucose dehydrogen 37.6 21 0.00045 38.3 1.9 49 165-221 7-55 (773)
10 PF04893 Yip1: Yip1 domain; I 36.6 39 0.00085 26.2 2.9 38 13-50 4-41 (172)
11 PF06103 DUF948: Bacterial pro 33.3 38 0.00083 25.6 2.3 23 164-186 3-25 (90)
12 PF04156 IncA: IncA protein; 32.3 40 0.00086 28.2 2.5 62 158-221 2-66 (191)
13 PF12911 OppC_N: N-terminal TM 32.1 67 0.0015 22.0 3.2 29 26-54 7-36 (56)
14 PF03900 Porphobil_deamC: Porp 29.8 24 0.00051 26.1 0.7 14 180-193 9-22 (74)
15 PF11998 DUF3493: Protein of u 29.3 1E+02 0.0023 24.4 4.2 28 13-40 1-29 (75)
16 KOG4681 Uncharacterized conser 28.4 36 0.00079 32.8 1.8 29 152-183 50-81 (280)
17 COG3024 Uncharacterized protei 28.1 24 0.00051 27.7 0.5 18 59-77 19-36 (65)
18 PF11239 DUF3040: Protein of u 28.0 38 0.00082 25.8 1.5 15 199-213 67-81 (82)
19 PF07423 DUF1510: Protein of u 25.6 65 0.0014 29.6 2.8 20 161-180 14-33 (217)
20 PF04156 IncA: IncA protein; 25.3 66 0.0014 26.9 2.6 26 163-188 33-58 (191)
21 KOG3879 Predicted membrane pro 25.2 66 0.0014 30.9 2.9 30 99-128 77-106 (267)
22 KOG1176 Acyl-CoA synthetase [L 23.8 45 0.00097 33.8 1.6 29 189-217 230-259 (537)
23 PF01284 MARVEL: Membrane-asso 23.8 94 0.002 23.8 3.1 24 118-141 84-107 (144)
24 PF07328 VirD1: T-DNA border e 23.4 42 0.00091 29.8 1.2 20 13-32 100-119 (147)
25 PF03522 KCl_Cotrans_1: K-Cl C 23.1 39 0.00084 23.3 0.7 13 266-278 13-25 (30)
26 KOG0347 RNA helicase [RNA proc 22.7 46 0.00099 35.6 1.5 46 222-270 35-81 (731)
27 PF10945 DUF2629: Protein of u 21.9 74 0.0016 23.3 2.0 31 6-36 7-39 (44)
28 PF07708 Tash_PEST: Tash prote 21.8 43 0.00093 21.0 0.7 8 266-273 12-19 (19)
29 PF03739 YjgP_YjgQ: Predicted 21.6 94 0.002 27.7 3.0 53 162-218 302-354 (354)
30 TIGR03089 conserved hypothetic 21.4 60 0.0013 28.1 1.7 27 190-216 183-210 (227)
31 PF03383 Serpentine_r_xa: Caen 21.4 52 0.0011 28.8 1.4 18 6-23 24-41 (153)
32 COG3230 HemO Heme oxygenase [I 21.1 34 0.00073 31.6 0.1 45 210-257 123-180 (196)
33 COG0117 RibD Pyrimidine deamin 20.9 68 0.0015 28.3 2.0 44 217-261 98-145 (146)
No 1
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=65.49 E-value=19 Score=30.85 Aligned_cols=69 Identities=19% Similarity=0.379 Sum_probs=36.6
Q ss_pred hchhHHHHHHHHHHHHHHHHhhheeEEEeecCCCCCCcccccc-cccccccccCCCCCCCCCCceeeeeccccceeeE
Q 022600 31 LQRPFLISALTLICIVVAVCTIVSLKIVFPSDYGRRPFCSDVR-LQPLQINVKGEGGDSDLFPGAFYLTDQETVDYYW 107 (294)
Q Consensus 31 LqrPl~~~~~~~v~~av~v~~~isl~iVFp~~~~~rpFC~~rR-L~~l~~~~~~~g~~~~~~pgAfylT~~Ea~dyyW 107 (294)
=||.++...+.+++++.-+.++.+-+--=-.-.--.|+|.+.+ ..=++......+ .+.. +++++|+|.|
T Consensus 5 ~~Ra~Ls~~ln~LAL~~S~tA~~sSyWC~GTqKVpKPlC~~~~~~~Ci~~~~~~~~-~~~~-------~~~~~VqY~W 74 (118)
T PF07803_consen 5 RQRALLSLILNLLALAFSTTALLSSYWCEGTQKVPKPLCGKGKGTNCIHFPSNSDS-GSNT-------SDSNVVQYIW 74 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccccccceecCCCCCCccccCcCcCCCCCCcc-cccC-------CCCceeEEEE
Confidence 3566776677777777666666665432211122358996533 222222211111 1211 3789999999
No 2
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=54.86 E-value=14 Score=30.84 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=16.1
Q ss_pred ChhHHhhhhhhhhhhhhh
Q 022600 14 PKHEYERIREEDKAWVKL 31 (294)
Q Consensus 14 pk~~Ye~LReeekaw~kL 31 (294)
|.++||++|+|++.|..+
T Consensus 5 P~~~w~~i~~~~~~~~~~ 22 (170)
T PF06930_consen 5 PSDEWERIKREHESSWAL 22 (170)
T ss_pred hHHHHHHHHHcCCchhHH
Confidence 999999999999998644
No 3
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=50.45 E-value=7.8 Score=40.20 Aligned_cols=81 Identities=20% Similarity=0.449 Sum_probs=44.3
Q ss_pred cccceeeEEeeehhhHHHHHHHHHHHhhceeeeeeC-C-CccceeEEeecccccccCCccchhhhHHHHHHHHHHHHHHH
Q 022600 100 QETVDYYWMVVFIPSTIIFLASIVYLVAGITVAYTA-P-RRHGCLNVVENNYCASKRGGVRCLSILNAVFAIIFGLLALF 177 (294)
Q Consensus 100 ~Ea~dyyWmVvF~Ps~v~f~~S~~YL~AGi~VAYsA-P-~RH~clkVVENn~CASkRGGVRCLsiLN~vFaiifgllAlf 177 (294)
++-..|-|.+-.+=+.++.++ ++.++.|.....-- + +..|. +.+|.|+-|| +|| ++-+.|+.+|..+-++
T Consensus 407 ~~y~~yR~~~~lil~~~llLI-v~~~~lGLl~G~~G~~~~~~p~-----~r~c~~~tGg-~~L-m~gv~~~Flf~~~l~l 478 (806)
T PF05478_consen 407 EKYDSYRWIVGLILCCVLLLI-VLCLLLGLLCGCCGYRRRADPT-----DRGCSSNTGG-NFL-MAGVGLSFLFSWFLML 478 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCCCc-----ccCCCCCccH-HHH-HHHHHHHHHHHHHHHH
Confidence 334444555544444444444 44445666555444 2 22222 4577777776 576 3456676666666666
Q ss_pred HhhhhhhcCCC
Q 022600 178 LGSSLLTLGSS 188 (294)
Q Consensus 178 LGsslLtLgss 188 (294)
++.+.+.+|..
T Consensus 479 ~~~~~Fl~G~~ 489 (806)
T PF05478_consen 479 LVLFYFLVGGN 489 (806)
T ss_pred HHHHHHHHHhh
Confidence 66666666654
No 4
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=42.70 E-value=9.4 Score=28.75 Aligned_cols=14 Identities=43% Similarity=0.888 Sum_probs=8.5
Q ss_pred cCCCCCCcccccccc
Q 022600 61 SDYGRRPFCSDVRLQ 75 (294)
Q Consensus 61 ~~~~~rpFC~~rRL~ 75 (294)
.++.-||||++ |=+
T Consensus 16 ~~n~~rPFCS~-RCk 29 (57)
T PF03884_consen 16 PENPFRPFCSE-RCK 29 (57)
T ss_dssp SSSS--SSSSH-HHH
T ss_pred CCCCcCCcccH-hhc
Confidence 45578999998 533
No 5
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=41.86 E-value=86 Score=32.35 Aligned_cols=73 Identities=27% Similarity=0.448 Sum_probs=44.7
Q ss_pred ceeeEEeeehhhHHH--------HHHHHHHHhhceeeeeeCCCccceeEEeecccccccCCccchhhhH--HHHHHHHHH
Q 022600 103 VDYYWMVVFIPSTII--------FLASIVYLVAGITVAYTAPRRHGCLNVVENNYCASKRGGVRCLSIL--NAVFAIIFG 172 (294)
Q Consensus 103 ~dyyWmVvF~Ps~v~--------f~~S~~YL~AGi~VAYsAP~RH~clkVVENn~CASkRGGVRCLsiL--N~vFaiifg 172 (294)
-+-+||.+=+|...+ |+.++.||+.| |. .-+...+. -+.++.+|.
T Consensus 112 Lq~~~l~iH~p~~~lgya~~~v~f~~a~~~L~~~----------~~---------------~~~~~~~~~~~~~~g~~fl 166 (576)
T TIGR00353 112 LQDPGLIFHPPLLYMGYVGFSVAFAFALASLLRG----------EL---------------DSACARICRPWTLAAWSFL 166 (576)
T ss_pred hcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhc----------cc---------------hhHHHHHHHHHHHHHHHHH
Confidence 345799998887554 66777777643 10 11122222 256778888
Q ss_pred HHHHHHhhhhhhcCCCCCcchhhhhhhhhhH------------HHhhhhchhe
Q 022600 173 LLALFLGSSLLTLGSSCSVPLFWCYEIGSWG------------LVILYAGTAF 213 (294)
Q Consensus 173 llAlfLGsslLtLgssCSipLFWCYEi~~WG------------LViLyggTAF 213 (294)
-++|++|+ .|-|+...|| |+.....||+
T Consensus 167 t~Gi~~G~-------------~WAy~~l~WGg~W~WDPvE~~Sli~WL~y~a~ 206 (576)
T TIGR00353 167 TLGIVLGS-------------WWAYYELGWGGWWFWDPVENASLMPWLSGTAL 206 (576)
T ss_pred HHHHHHHH-------------HHhccccccCCCcCccHHHHHHHHHHHHHHHH
Confidence 88888887 4777655544 5555555663
No 6
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=39.35 E-value=13 Score=28.64 Aligned_cols=14 Identities=50% Similarity=0.693 Sum_probs=10.1
Q ss_pred cCCCCCCcccccccc
Q 022600 61 SDYGRRPFCSDVRLQ 75 (294)
Q Consensus 61 ~~~~~rpFC~~rRL~ 75 (294)
.++.-||||++ |=+
T Consensus 20 ~~~~~rPFCS~-RCk 33 (62)
T PRK00418 20 EISPFRPFCSK-RCQ 33 (62)
T ss_pred CCCCcCCcccH-HHH
Confidence 35678999998 533
No 7
>PRK05529 cell division protein FtsQ; Provisional
Probab=39.13 E-value=42 Score=30.40 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=29.8
Q ss_pred hhHHHHhhcCChhHHhhhhhhhhhhhhhchhHHHHHHHHHHHHHHH
Q 022600 4 IGDALRQAFMPKHEYERIREEDKAWVKLQRPFLISALTLICIVVAV 49 (294)
Q Consensus 4 ~gDALrQaFMpk~~Ye~LReeekaw~kLqrPl~~~~~~~v~~av~v 49 (294)
+|-.+|++-+-+++|+.+|-=-+- .+.+|+++.++++++.+.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~l~~l 51 (255)
T PRK05529 7 AYQNLRYARKERKDYERVRRFTTR-IRRRFILLACAVGAVLTLLLF 51 (255)
T ss_pred hhhhhhhhcccCCchhhhhchhhh-ccchhhhHHHHHHHHHHHHHH
Confidence 567789988889999996654443 344577777666655444333
No 8
>PRK01343 zinc-binding protein; Provisional
Probab=38.25 E-value=14 Score=27.99 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=9.6
Q ss_pred CCCCCcccccccccc
Q 022600 63 YGRRPFCSDVRLQPL 77 (294)
Q Consensus 63 ~~~rpFC~~rRL~~l 77 (294)
...||||++ |=+-+
T Consensus 21 ~~~rPFCS~-RC~~i 34 (57)
T PRK01343 21 REAYPFCSE-RCRDI 34 (57)
T ss_pred CCCCcccCH-HHhhh
Confidence 467999998 54333
No 9
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=37.57 E-value=21 Score=38.30 Aligned_cols=49 Identities=37% Similarity=0.611 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCcchhhhhhhhhhHHHhhhhchheeeecccee
Q 022600 165 AVFAIIFGLLALFLGSSLLTLGSSCSVPLFWCYEIGSWGLVILYAGTAFFLRRKSAA 221 (294)
Q Consensus 165 ~vFaiifgllAlfLGsslLtLgssCSipLFWCYEi~~WGLViLyggTAFFLrRKAAv 221 (294)
.++.+.-||--+.-|.-|++||-| |-|=|+ ||++|..+--.|+||+||+
T Consensus 7 ~~~~~~~gl~l~~gg~~l~~lggs------~yy~ia--gl~~l~~~~ll~~~k~aal 55 (773)
T COG4993 7 ALVIALCGLALLIGGIWLVALGGS------WYYLIA--GLVLLLSAWLLLRRKRAAL 55 (773)
T ss_pred HHHHHHHHHHHhccceeEEeeCCc------hHHHHH--HHHHHHHHHHHhccchhHH
Confidence 334444455444556778899987 777776 8888888888888888875
No 10
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=36.63 E-value=39 Score=26.18 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=23.3
Q ss_pred CChhHHhhhhhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q 022600 13 MPKHEYERIREEDKAWVKLQRPFLISALTLICIVVAVC 50 (294)
Q Consensus 13 Mpk~~Ye~LReeekaw~kLqrPl~~~~~~~v~~av~v~ 50 (294)
=|++.+|+++++++.-.....|+...++....++.+.+
T Consensus 4 ~P~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 41 (172)
T PF04893_consen 4 SPREFFRRLRESPRISKSWWLPLLLVILLTLVFGLLSS 41 (172)
T ss_pred CHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999998222334455555544444444443
No 11
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=33.27 E-value=38 Score=25.58 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcC
Q 022600 164 NAVFAIIFGLLALFLGSSLLTLG 186 (294)
Q Consensus 164 N~vFaiifgllAlfLGsslLtLg 186 (294)
.+++||.|.++++||..++..++
T Consensus 3 ~lI~Aiaf~vLvi~l~~~l~~l~ 25 (90)
T PF06103_consen 3 GLIAAIAFAVLVIFLIKVLKKLK 25 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999988774
No 12
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.25 E-value=40 Score=28.18 Aligned_cols=62 Identities=26% Similarity=0.360 Sum_probs=30.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhcCCC-CCcchhhhhhhhh--hHHHhhhhchheeeecccee
Q 022600 158 RCLSILNAVFAIIFGLLALFLGSSLLTLGSS-CSVPLFWCYEIGS--WGLVILYAGTAFFLRRKSAA 221 (294)
Q Consensus 158 RCLsiLN~vFaiifgllAlfLGsslLtLgss-CSipLFWCYEi~~--WGLViLyggTAFFLrRKAAv 221 (294)
+|-.|.|++. ++.|++-+..|...|+++.. ++.+..=.=-++. =|+|++=+|..+++ +|..+
T Consensus 2 ~~~~i~~i~~-iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~-~~~~~ 66 (191)
T PF04156_consen 2 KKQRIISIIL-IILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCLL-SKRPV 66 (191)
T ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcccc
Confidence 3555666654 55566666666666666542 4443332222222 24444445554444 44444
No 13
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=32.05 E-value=67 Score=22.05 Aligned_cols=29 Identities=17% Similarity=0.487 Sum_probs=19.1
Q ss_pred hhhhhh-chhHHHHHHHHHHHHHHHHhhhe
Q 022600 26 KAWVKL-QRPFLISALTLICIVVAVCTIVS 54 (294)
Q Consensus 26 kaw~kL-qrPl~~~~~~~v~~av~v~~~is 54 (294)
++|.++ +.|+++.+++++.+.+++|....
T Consensus 7 ~~~~~f~~nk~a~~gl~il~~~vl~ai~~p 36 (56)
T PF12911_consen 7 DAWRRFRRNKLAVIGLIILLILVLLAIFAP 36 (56)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 456654 45788888877777666665543
No 14
>PF03900 Porphobil_deamC: Porphobilinogen deaminase, C-terminal domain; InterPro: IPR022418 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the C-terminal domain of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this alpha/beta domain consists of alpha-beta(3)-alpha in two layers []. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 3EQ1_B 3ECR_A 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A.
Probab=29.85 E-value=24 Score=26.13 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=9.6
Q ss_pred hhhhhcCCCCCcch
Q 022600 180 SSLLTLGSSCSVPL 193 (294)
Q Consensus 180 sslLtLgssCSipL 193 (294)
++|=+||.+|++|+
T Consensus 9 ~fl~~l~ggC~~Pi 22 (74)
T PF03900_consen 9 AFLKELGGGCHSPI 22 (74)
T ss_dssp HHHHHCT--TTSSE
T ss_pred HHHHHhCCCCCCce
Confidence 35678999999996
No 15
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=29.31 E-value=1e+02 Score=24.40 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=21.0
Q ss_pred CChhHHhhhhhhhhh-hhhhchhHHHHHH
Q 022600 13 MPKHEYERIREEDKA-WVKLQRPFLISAL 40 (294)
Q Consensus 13 Mpk~~Ye~LReeeka-w~kLqrPl~~~~~ 40 (294)
|..+.|+.||.|-++ |+.+++=+..+..
T Consensus 1 ~~~~~~~rLraE~~aPfR~lR~f~y~a~~ 29 (75)
T PF11998_consen 1 MDPEQYARLRAEAQAPFRGLRRFFYGAFG 29 (75)
T ss_pred CCHHHHHHHHHHHHCchHHHHHHHHHHHH
Confidence 778899999999988 5577766554443
No 16
>KOG4681 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.40 E-value=36 Score=32.84 Aligned_cols=29 Identities=45% Similarity=0.834 Sum_probs=21.8
Q ss_pred ccCCcc---chhhhHHHHHHHHHHHHHHHHhhhhh
Q 022600 152 SKRGGV---RCLSILNAVFAIIFGLLALFLGSSLL 183 (294)
Q Consensus 152 SkRGGV---RCLsiLN~vFaiifgllAlfLGsslL 183 (294)
|++|++ +|.- ..|.+.|++|.|.||+.-|
T Consensus 50 s~~g~~~~g~c~~---~~~g~sf~lmglvlgg~~l 81 (280)
T KOG4681|consen 50 SKVGWVMEGGCFD---LLFGLSFGLMGLVLGGAYL 81 (280)
T ss_pred hhccCccCcchHH---HHHhHHHHHHhhhccccee
Confidence 555544 3544 7899999999999998765
No 17
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.08 E-value=24 Score=27.74 Aligned_cols=18 Identities=33% Similarity=0.683 Sum_probs=11.9
Q ss_pred eecCCCCCCcccccccccc
Q 022600 59 FPSDYGRRPFCSDVRLQPL 77 (294)
Q Consensus 59 Fp~~~~~rpFC~~rRL~~l 77 (294)
.-.++.-||||++ |-|-+
T Consensus 19 w~~~s~frPFCSk-RCklI 36 (65)
T COG3024 19 WGEESPFRPFCSK-RCKLI 36 (65)
T ss_pred ccccCCcCcchhH-hhhhc
Confidence 3345578999998 64433
No 18
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=27.96 E-value=38 Score=25.78 Aligned_cols=15 Identities=33% Similarity=0.775 Sum_probs=12.6
Q ss_pred hhhhHHHhhhhchhe
Q 022600 199 IGSWGLVILYAGTAF 213 (294)
Q Consensus 199 i~~WGLViLyggTAF 213 (294)
+..||+++..+|..+
T Consensus 67 ~~v~G~~v~~~~~~~ 81 (82)
T PF11239_consen 67 LGVAGFVVMVAGAVW 81 (82)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788999999988754
No 19
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=25.65 E-value=65 Score=29.61 Aligned_cols=20 Identities=25% Similarity=0.276 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 022600 161 SILNAVFAIIFGLLALFLGS 180 (294)
Q Consensus 161 siLN~vFaiifgllAlfLGs 180 (294)
.|||+.++|...|..++++.
T Consensus 14 ~iLNiaI~IV~lLIiiva~~ 33 (217)
T PF07423_consen 14 KILNIAIGIVSLLIIIVAYQ 33 (217)
T ss_pred hhHHHHHHHHHHHHHHHhhh
Confidence 58999999888555544443
No 20
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.29 E-value=66 Score=26.89 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCC
Q 022600 163 LNAVFAIIFGLLALFLGSSLLTLGSS 188 (294)
Q Consensus 163 LN~vFaiifgllAlfLGsslLtLgss 188 (294)
+-.++.++-|...+.+|..++++|-.
T Consensus 33 l~~~~s~~lg~~~lAlg~vL~~~g~~ 58 (191)
T PF04156_consen 33 LGALISFILGIALLALGVVLLSLGLL 58 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677777777777753
No 21
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=25.19 E-value=66 Score=30.91 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=22.8
Q ss_pred ccccceeeEEeeehhhHHHHHHHHHHHhhc
Q 022600 99 DQETVDYYWMVVFIPSTIIFLASIVYLVAG 128 (294)
Q Consensus 99 ~~Ea~dyyWmVvF~Ps~v~f~~S~~YL~AG 128 (294)
-.+-++.=|.|||+|.-|+-.++.+|++--
T Consensus 77 LD~~v~WnW~VVFvPlWI~~sil~V~VLy~ 106 (267)
T KOG3879|consen 77 LDKIVHWNWFVVFVPLWIFDSILLVVVLYK 106 (267)
T ss_pred cCcccCCceEEEeehHHHHHHHHHHHHHHH
Confidence 346788999999999988777766665543
No 22
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=23.85 E-value=45 Score=33.79 Aligned_cols=29 Identities=38% Similarity=0.720 Sum_probs=19.7
Q ss_pred CCcchhhhhhhhhhHHHhhhhchh-eeeec
Q 022600 189 CSVPLFWCYEIGSWGLVILYAGTA-FFLRR 217 (294)
Q Consensus 189 CSipLFWCYEi~~WGLViLyggTA-FFLrR 217 (294)
|..|+||||=..+=....+.+||. .++|+
T Consensus 230 ~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~ 259 (537)
T KOG1176|consen 230 CTLPLFHIYGLITLLLSLLAGGTTIICLRK 259 (537)
T ss_pred EechHHHHhHHHHHHHHHHhCCceEEECCC
Confidence 889999999877655544555544 44554
No 23
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=23.79 E-value=94 Score=23.78 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=19.7
Q ss_pred HHHHHHHHhhceeeeeeCCCccce
Q 022600 118 FLASIVYLVAGITVAYTAPRRHGC 141 (294)
Q Consensus 118 f~~S~~YL~AGi~VAYsAP~RH~c 141 (294)
.+..+.||.+++..|...++.|-+
T Consensus 84 ~v~~il~l~a~~~~a~~~~~~~~~ 107 (144)
T PF01284_consen 84 AVFAILWLAAFIALAAYLSDHSCS 107 (144)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccc
Confidence 466788999999999988887765
No 24
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=23.45 E-value=42 Score=29.85 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=18.0
Q ss_pred CChhHHhhhhhhhhhhhhhc
Q 022600 13 MPKHEYERIREEDKAWVKLQ 32 (294)
Q Consensus 13 Mpk~~Ye~LReeekaw~kLq 32 (294)
-|+-|||++++|-|+++|.-
T Consensus 100 ~~~pd~e~f~aER~~fGk~f 119 (147)
T PF07328_consen 100 TPRPDYEAFRAERKAFGKEF 119 (147)
T ss_pred CCCccHHHHHHHHHHHHHHH
Confidence 69999999999999999754
No 25
>PF03522 KCl_Cotrans_1: K-Cl Co-transporter type 1 (KCC1); InterPro: IPR018491 The K-Cl co-transporter (KCC) mediates the coupled movement of K+ and Cl- ions across the plasma membrane of many animal cells. This transport is involved in the regulatory volume decrease in response to cell swelling in red blood cells, and has been proposed to play a role in the vectorial movement of Cl- across kidney epithelia. The transport process involves one for one electroneutral movement of K+ together with Cl-, and, in all known mammalian cells, the net movement is outward []. In neurones, it appears to play a unique role in maintaining low intracellular Cl-concentration, which is required for the functioning of Cl- dependent fast synaptic inhibition, mediated by certain neurotransmitters, such as gamma-aminobutyric acid (GABA) and glycine. Three isoforms of the K-Cl co-transporter have been described, termed KCC1 KCC2, and KCC3, containing 1085, 1116 and 1150 amino acids, respectively. They are predicted to have 12 transmembrane (TM) regions in a central hydrophobic domain, together with hydrophilic N- and C-termini that are likely cytoplasmic. Comparison of their sequences with those of other ion-tranporting membrane proteins reveals that they are part of a new superfamily of cation-chloride co-transporters, which includes the Na-Cl and Na-K-2Cl co-transporters. KCC1 and KCC3 are widely expressed in human tissues, while KCC2 is are expressed only in brain neurones, making it likely that this is the isoform responsible for maintaining low Cl- concentration in neurones [, , ]. KCC1 is widely expressed in human tissues, and when heterologously expressed, possesses the functional characteristics of the well-studied red blood cell K-Cl co-transporter, including stimulation by both swelling and N-ethylmaleimide. Several splice variants have also been identified. KCC3 is widely expressed in human tissues and, like KCC1, is stimulated by both swelling and N-ethylmaleimide. The induction of KCC3 is up-regulated by vascular endothelial growth factor and down-regulated by tumour necrosis factor. Defects in KCC3 are linked to agenesis of the corpus callosum with peripheral neuropathy []. This disorder is characterised by severe progressive sensorimotor neuropathy, mental retardation, dysmorphic features and complete or partial agenesis of the corpus callosum.; GO: 0005215 transporter activity, 0006811 ion transport, 0016020 membrane
Probab=23.11 E-value=39 Score=23.26 Aligned_cols=13 Identities=46% Similarity=0.521 Sum_probs=7.7
Q ss_pred CCCCCCCCCCccc
Q 022600 266 LSSDEEDEPDDYL 278 (294)
Q Consensus 266 LSsDeE~e~d~y~ 278 (294)
|-||||||.+-+.
T Consensus 13 lySDeeeE~~~~~ 25 (30)
T PF03522_consen 13 LYSDEEEETETEP 25 (30)
T ss_pred cccCcccccccch
Confidence 3466677776443
No 26
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=22.75 E-value=46 Score=35.58 Aligned_cols=46 Identities=35% Similarity=0.421 Sum_probs=35.4
Q ss_pred eccCCCCCCcccchhhhhcCCCCCChh-hhhhhhhhhhhcccccCCCCCC
Q 022600 222 VFDDGDSDGRNLGVEMLEANPLEVTPD-VERRVSEGFKTWMGSSFLSSDE 270 (294)
Q Consensus 222 ilDeg~~~~~~~GlEmLEa~p~evtpe-~erRvn~GFksWMGsSlLSsDe 270 (294)
++| |||++ +.|+|-|-.- .+|+|+ ++.++.-+=|-|=-.+.-|..|
T Consensus 35 ~~D-g~fd~-~~gle~l~~~-q~v~~~~~p~k~~~~~kkk~Kv~k~~~~E 81 (731)
T KOG0347|consen 35 AMD-GDFDG-LYGLEELDDY-QEVLPKVVPGKVTKVEKKKRKVKKVSNEE 81 (731)
T ss_pred ccC-CCccc-eechheecch-hhhccccCchhhhhhhhhhhcccCccccc
Confidence 567 89999 9999999888 777775 6778888888887666555443
No 27
>PF10945 DUF2629: Protein of unknown function (DUF2629); InterPro: IPR024487 Some members in this family of proteins are annotated as YhjR however currently no function is known.
Probab=21.91 E-value=74 Score=23.34 Aligned_cols=31 Identities=45% Similarity=0.687 Sum_probs=22.2
Q ss_pred HHHHhhc-CChhHHhhhhhhhhhhhhhch-hHH
Q 022600 6 DALRQAF-MPKHEYERIREEDKAWVKLQR-PFL 36 (294)
Q Consensus 6 DALrQaF-Mpk~~Ye~LReeekaw~kLqr-Pl~ 36 (294)
.+|+|+| ||+=+|--+-.||+.=.-++| ||+
T Consensus 7 ~~L~~~fslp~~~Y~DIsr~e~l~~~~~RWPLL 39 (44)
T PF10945_consen 7 AALSQAFSLPDINYIDISREERLNQALQRWPLL 39 (44)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHHHChhH
Confidence 4899999 999999888777765233333 443
No 28
>PF07708 Tash_PEST: Tash protein PEST motif; InterPro: IPR011695 The PEST motif is found in one or more copies in Tash AT-hook proteins from Theileria annulata. Tash proteins are transported to the host nucleus and are thought to be involved in pathogenesis []. The PEST motif is often found in conjunction with the (IPR007480 from INTERPRO), whose function is unknown. These repeats may be part of the PEST motif (a signal for rapid proteolytic degradation) [], though this is not proven. This motif is also found in other T. annulata proteins, which have no other known domains.
Probab=21.84 E-value=43 Score=21.00 Aligned_cols=8 Identities=63% Similarity=0.983 Sum_probs=4.3
Q ss_pred CCCCCCCC
Q 022600 266 LSSDEEDE 273 (294)
Q Consensus 266 LSsDeE~e 273 (294)
++||||+|
T Consensus 12 i~SDeeee 19 (19)
T PF07708_consen 12 IGSDEEEE 19 (19)
T ss_pred ecccccCC
Confidence 45665543
No 29
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=21.62 E-value=94 Score=27.69 Aligned_cols=53 Identities=26% Similarity=0.474 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcCCCCCcchhhhhhhhhhHHHhhhhchheeeecc
Q 022600 162 ILNAVFAIIFGLLALFLGSSLLTLGSSCSVPLFWCYEIGSWGLVILYAGTAFFLRRK 218 (294)
Q Consensus 162 iLN~vFaiifgllAlfLGsslLtLgssCSipLFWCYEi~~WGLViLyggTAFFLrRK 218 (294)
..++..+++++++=.++.....++|.+=-+|-+| +.|.-.++++..++++-||
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~l~p~~----a~w~p~ii~~~~~~~l~~R 354 (354)
T PF03739_consen 302 ISSLFIALLLGFLYYILFSFFSSLGENGNLPPFI----AAWLPNIIFLILGLYLLRR 354 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHH----HHHHHHHHHHHHHHHHHhC
Confidence 4557778888888777778888888888888887 7899999999888876554
No 30
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=21.45 E-value=60 Score=28.11 Aligned_cols=27 Identities=4% Similarity=-0.135 Sum_probs=18.5
Q ss_pred CcchhhhhhhhhhH-HHhhhhchheeee
Q 022600 190 SVPLFWCYEIGSWG-LVILYAGTAFFLR 216 (294)
Q Consensus 190 SipLFWCYEi~~WG-LViLyggTAFFLr 216 (294)
-.||||+|-..+-. ..+..|||..+++
T Consensus 183 ~~Pl~H~~gl~~~~~~~l~~G~t~v~~~ 210 (227)
T TIGR03089 183 VLAWTDLEDFLATLLAPLAAGGSLVLVT 210 (227)
T ss_pred ecCCCchHHHHHHHHHHhccCceEEEec
Confidence 46999999986544 4445577766664
No 31
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=21.44 E-value=52 Score=28.83 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=12.7
Q ss_pred HHHHhhcCChhHHhhhhh
Q 022600 6 DALRQAFMPKHEYERIRE 23 (294)
Q Consensus 6 DALrQaFMpk~~Ye~LRe 23 (294)
|..-.-++|++.||..|.
T Consensus 24 ~~~~~~~~~~~~Y~~yr~ 41 (153)
T PF03383_consen 24 DFWIPLFLPDEGYEEYRQ 41 (153)
T ss_pred hhhhhhccChhHHHHHHH
Confidence 333344799999998873
No 32
>COG3230 HemO Heme oxygenase [Inorganic ion transport and metabolism]
Probab=21.06 E-value=34 Score=31.61 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=31.1
Q ss_pred chheeeeccceeeccCCCCCCcc-------cc------hhhhhcCCCCCChhhhhhhhhhh
Q 022600 210 GTAFFLRRKSAAVFDDGDSDGRN-------LG------VEMLEANPLEVTPDVERRVSEGF 257 (294)
Q Consensus 210 gTAFFLrRKAAvilDeg~~~~~~-------~G------lEmLEa~p~evtpe~erRvn~GF 257 (294)
|.||.+++-|.+=+++ +||.+- .| +|.|+++ ++|||-|+++.+|=
T Consensus 123 GaAfL~K~aa~L~l~~-e~garhLag~~~grG~~WrsF~e~L~~~--~l~~E~e~~av~gA 180 (196)
T COG3230 123 GAAFLFKHAAKLGLNP-EFGARHLAGYGDGRGKRWRSFVEHLDAI--NLTPEAEAEAVAGA 180 (196)
T ss_pred HHHHHHHHHHHhcCCc-ccchHhhcCCCCCCCccHHHHHHHHHhc--cCCHHHHHHHHHHH
Confidence 4577777766655555 455433 22 5788875 78999999999983
No 33
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=20.93 E-value=68 Score=28.34 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=32.2
Q ss_pred ccceeeccCCCCCCcccchhhhhcCCCCCCh----hhhhhhhhhhhhcc
Q 022600 217 RKSAAVFDDGDSDGRNLGVEMLEANPLEVTP----DVERRVSEGFKTWM 261 (294)
Q Consensus 217 RKAAvilDeg~~~~~~~GlEmLEa~p~evtp----e~erRvn~GFksWM 261 (294)
|=-..++|....-. ..|+++|++..+||.- +-.++.|+||+.||
T Consensus 98 rVvva~~DPnp~Va-g~G~~~L~~aGi~V~~gil~~e~~~l~~~f~~~~ 145 (146)
T COG0117 98 RVVVAMLDPNPLVA-GGGLARLRAAGIEVEVGILEEEAEKLNEGFLKRM 145 (146)
T ss_pred EEEEEecCCCcccc-CchHHHHHHcCCeEEEehhHHHHHHHHHHHHccc
Confidence 33345677733444 6799999999988753 45678999999997
Done!