Query 022600
Match_columns 294
No_of_seqs 15 out of 17
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 08:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eo2_A Adult MALE hypothalamus 35.9 5.5 0.00019 30.5 -0.8 36 59-104 20-57 (71)
2 2ks1_B Epidermal growth factor 28.2 12 0.00039 26.0 -0.1 16 204-219 24-39 (44)
3 1lv3_A Hypothetical protein YA 27.5 21 0.00071 26.8 1.1 14 61-75 23-36 (68)
4 2l2t_A Receptor tyrosine-prote 23.0 16 0.00056 25.3 -0.1 16 204-219 23-38 (44)
5 2rr3_B OSBP, oxysterol-binding 22.6 59 0.002 23.2 2.6 18 270-287 14-31 (47)
6 2qts_A Acid-sensing ION channe 22.2 45 0.0015 29.6 2.5 18 168-185 407-424 (438)
7 3hs2_A PHD protein, prevent HO 18.4 34 0.0012 23.3 0.6 15 12-26 38-52 (58)
8 2jwa_A Receptor tyrosine-prote 17.4 22 0.00076 24.8 -0.4 15 204-218 24-38 (44)
9 2p06_A Hypothetical protein AF 17.0 28 0.00097 28.1 -0.0 19 6-25 70-88 (114)
10 1iij_A ERBB-2 receptor protein 16.6 28 0.00096 23.3 -0.1 15 204-218 20-34 (35)
No 1
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.93 E-value=5.5 Score=30.53 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=26.3
Q ss_pred eecCCCCCCcc--cccccccccccccCCCCCCCCCCceeeeeccccce
Q 022600 59 FPSDYGRRPFC--SDVRLQPLQINVKGEGGDSDLFPGAFYLTDQETVD 104 (294)
Q Consensus 59 Fp~~~~~rpFC--~~rRL~~l~~~~~~~g~~~~~~pgAfylT~~Ea~d 104 (294)
-|...|+|-|- +-+||+.|-|. -.|-++ ||+||...
T Consensus 20 VP~~kG~R~Fs~iql~RL~kLGI~----ktdP~~------LT~eEi~~ 57 (71)
T 2eo2_A 20 VPLVNGVREFSEIQLSRLKKLGIH----KTDPST------LTEEEVRK 57 (71)
T ss_dssp SCCSSSSCCCCHHHHHHHHHHTCC----CCSTTT------CCHHHHHH
T ss_pred CCCCCCeeecCHHHHHHHHHcCCC----CCCccc------CCHHHHhh
Confidence 37788999996 55799999874 344444 78988754
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.16 E-value=12 Score=25.98 Aligned_cols=16 Identities=31% Similarity=0.781 Sum_probs=10.3
Q ss_pred HHhhhhchheeeeccc
Q 022600 204 LVILYAGTAFFLRRKS 219 (294)
Q Consensus 204 LViLyggTAFFLrRKA 219 (294)
++++.+++.||+|||.
T Consensus 24 ~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 24 LLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhhhH
Confidence 4455566677787774
No 3
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=27.52 E-value=21 Score=26.81 Aligned_cols=14 Identities=50% Similarity=0.693 Sum_probs=10.1
Q ss_pred cCCCCCCcccccccc
Q 022600 61 SDYGRRPFCSDVRLQ 75 (294)
Q Consensus 61 ~~~~~rpFC~~rRL~ 75 (294)
.+...||||++ |=+
T Consensus 23 ~~~~~rPFCSe-RCr 36 (68)
T 1lv3_A 23 EISPFRPFCSK-RCQ 36 (68)
T ss_dssp SSSSCCSSSSH-HHH
T ss_pred ccCCCCcccCH-HHH
Confidence 34678999998 533
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.03 E-value=16 Score=25.35 Aligned_cols=16 Identities=50% Similarity=0.602 Sum_probs=10.8
Q ss_pred HHhhhhchheeeeccc
Q 022600 204 LVILYAGTAFFLRRKS 219 (294)
Q Consensus 204 LViLyggTAFFLrRKA 219 (294)
++++.+++.||+|||.
T Consensus 23 v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 23 LVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4455667778888774
No 5
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=22.56 E-value=59 Score=23.22 Aligned_cols=18 Identities=33% Similarity=0.755 Sum_probs=12.1
Q ss_pred CCCCCCcccCCCcccccc
Q 022600 270 EEDEPDDYLEAPPQITHT 287 (294)
Q Consensus 270 eE~e~d~y~~~p~~~~~~ 287 (294)
||||+..|-++|.-||.+
T Consensus 14 dEDed~EfFDA~efITv~ 31 (47)
T 2rr3_B 14 DEDDENEFFDAPEIITMP 31 (47)
T ss_dssp CCCCSSCCBCCCSSCSSC
T ss_pred ccccccccccccceeEcc
Confidence 477777788888655544
No 6
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=22.24 E-value=45 Score=29.59 Aligned_cols=18 Identities=44% Similarity=0.715 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhhc
Q 022600 168 AIIFGLLALFLGSSLLTL 185 (294)
Q Consensus 168 aiifgllAlfLGsslLtL 185 (294)
+=+=|+|+||+|.|+|++
T Consensus 407 s~~GG~~GLflG~S~ls~ 424 (438)
T 2qts_A 407 GDIGGQMGLFIGASILTV 424 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhcchHHHH
Confidence 566789999999999986
No 7
>3hs2_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, toxin-anti antitoxin; 2.20A {Enterobacteria phage P1}
Probab=18.42 E-value=34 Score=23.25 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=12.5
Q ss_pred cCChhHHhhhhhhhh
Q 022600 12 FMPKHEYERIREEDK 26 (294)
Q Consensus 12 FMpk~~Ye~LReeek 26 (294)
.||.+||++|+|.+.
T Consensus 38 lvs~~~y~~l~e~~~ 52 (58)
T 3hs2_A 38 IVSKATFEAYKKAAL 52 (58)
T ss_dssp EEEHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHhhh
Confidence 589999999988654
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=17.45 E-value=22 Score=24.75 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=10.2
Q ss_pred HHhhhhchheeeecc
Q 022600 204 LVILYAGTAFFLRRK 218 (294)
Q Consensus 204 LViLyggTAFFLrRK 218 (294)
+||+-.++.+|+|||
T Consensus 24 ~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 24 VVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheehh
Confidence 455666677778776
No 9
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=16.98 E-value=28 Score=28.11 Aligned_cols=19 Identities=42% Similarity=0.749 Sum_probs=11.6
Q ss_pred HHHHhhcCChhHHhhhhhhh
Q 022600 6 DALRQAFMPKHEYERIREED 25 (294)
Q Consensus 6 DALrQaFMpk~~Ye~LReee 25 (294)
|-||.| .-|+|||.||+|-
T Consensus 70 delrea-vekedwenlrdel 88 (114)
T 2p06_A 70 DELREA-VEKEDWENLRDEL 88 (114)
T ss_dssp HHHHHH-HHTTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHH
Confidence 556663 3566777777663
No 10
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=16.60 E-value=28 Score=23.35 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=10.7
Q ss_pred HHhhhhchheeeecc
Q 022600 204 LVILYAGTAFFLRRK 218 (294)
Q Consensus 204 LViLyggTAFFLrRK 218 (294)
.||+-.++.+++|||
T Consensus 20 ~vii~l~~~~~iRRr 34 (35)
T 1iij_A 20 FLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHTTTTTHHHHHC
T ss_pred HHHHHHHhheEEeec
Confidence 456667777888876
Done!