Your job contains 1 sequence.
>022601
MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGT
DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMD
QFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGL
SKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKL
EDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQVRCF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022601
(294 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2139514 - symbol:SQS1 "squalene synthase 1" sp... 1324 3.7e-135 1
TAIR|locus:2139534 - symbol:SQS2 "squalene synthase 2" sp... 1246 6.8e-127 1
UNIPROTKB|F1NFJ9 - symbol:FDFT1 "Uncharacterized protein"... 769 2.4e-76 1
MGI|MGI:102706 - symbol:Fdft1 "farnesyl diphosphate farne... 748 4.0e-74 1
RGD|61834 - symbol:Fdft1 "farnesyl diphosphate farnesyl t... 744 1.1e-73 1
UNIPROTKB|Q6IE76 - symbol:fdft1 "FDFT1 protein" species:9... 715 1.3e-70 1
UNIPROTKB|I3LFX7 - symbol:FDFT1 "Uncharacterized protein"... 715 1.3e-70 1
UNIPROTKB|Q32KR6 - symbol:FDFT1 "Squalene synthase" speci... 714 1.6e-70 1
UNIPROTKB|E9PNM1 - symbol:FDFT1 "Squalene synthase" speci... 712 2.6e-70 1
UNIPROTKB|P37268 - symbol:FDFT1 "Squalene synthase" speci... 707 8.9e-70 1
UNIPROTKB|E2R6N6 - symbol:FDFT1 "Uncharacterized protein"... 704 1.8e-69 1
ZFIN|ZDB-GENE-081104-242 - symbol:si:ch73-107c13.2 "si:ch... 696 1.3e-68 1
DICTYBASE|DDB_G0292072 - symbol:fdfT "farnesyl-diphosphat... 675 2.2e-66 1
UNIPROTKB|B7Z1J3 - symbol:FDFT1 "Squalene synthase" speci... 636 3.0e-62 1
POMBASE|SPBC646.05c - symbol:erg9 "squalene synthase Erg9... 628 2.1e-61 1
UNIPROTKB|B4DJE5 - symbol:FDFT1 "cDNA FLJ50548, highly si... 400 3.8e-60 2
ASPGD|ASPL0000036668 - symbol:AN10396 species:162425 "Eme... 594 8.4e-58 1
CGD|CAL0000316 - symbol:ERG9 species:5476 "Candida albica... 593 1.1e-57 1
UNIPROTKB|Q59Y33 - symbol:ERG9 "Putative uncharacterized ... 593 1.1e-57 1
SGD|S000001233 - symbol:ERG9 "Farnesyl-diphosphate farnes... 593 1.1e-57 1
UNIPROTKB|B4DT56 - symbol:FDFT1 "cDNA FLJ50660, highly si... 536 1.2e-51 1
UNIPROTKB|B3KQ95 - symbol:FDFT1 "Squalene synthase" speci... 489 1.1e-46 1
UNIPROTKB|E9PJG4 - symbol:FDFT1 "Squalene synthase" speci... 276 4.2e-24 1
UNIPROTKB|E9PS69 - symbol:FDFT1 "Squalene synthase" speci... 251 1.9e-21 1
UNIPROTKB|Q60AN4 - symbol:sqs "Squalene synthase" species... 163 1.2e-09 1
>TAIR|locus:2139514 [details] [associations]
symbol:SQS1 "squalene synthase 1" species:3702
"Arabidopsis thaliana" [GO:0004310 "farnesyl-diphosphate
farnesyltransferase activity" evidence=IEA;ISS;IDA] [GO:0008610
"lipid biosynthetic process" evidence=IEA] [GO:0009058
"biosynthetic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016765 "transferase activity, transferring alkyl
or aryl (other than methyl) groups" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0006598 "polyamine catabolic process"
evidence=RCA] [GO:0009698 "phenylpropanoid metabolic process"
evidence=RCA] [GO:0016126 "sterol biosynthetic process"
evidence=RCA;TAS] [GO:0016132 "brassinosteroid biosynthetic
process" evidence=RCA] [GO:0042398 "cellular modified amino acid
biosynthetic process" evidence=RCA] [GO:0005789 "endoplasmic
reticulum membrane" evidence=TAS] InterPro:IPR002060
InterPro:IPR006449 InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044
PROSITE:PS01045 GO:GO:0016021 GO:GO:0005886 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0005789 Gene3D:1.10.600.10
InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0016491 GO:GO:0016126
EMBL:AL161585 EMBL:AL023094 GO:GO:0008299 UniPathway:UPA00767
EMBL:D29017 EMBL:X86692 EMBL:AF004560 EMBL:U79159 EMBL:AY099868
EMBL:BT003419 IPI:IPI00526988 PIR:S54251 RefSeq:NP_195190.1
UniGene:At.20898 UniGene:At.67805 ProteinModelPortal:P53799
SMR:P53799 IntAct:P53799 STRING:P53799 PaxDb:P53799 PRIDE:P53799
EnsemblPlants:AT4G34640.1 GeneID:829616 KEGG:ath:AT4G34640
TAIR:At4g34640 eggNOG:COG1562 HOGENOM:HOG000186940
InParanoid:P53799 KO:K00801 OMA:ELEEYCW PhylomeDB:P53799
ProtClustDB:CLSN2685914 BioCyc:ARA:AT4G34640-MONOMER
BioCyc:MetaCyc:AT4G34640-MONOMER Genevestigator:P53799
GermOnline:AT4G34640 GO:GO:0004310 GO:GO:0051996 TIGRFAMs:TIGR01559
Uniprot:P53799
Length = 410
Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
Identities = 240/293 (81%), Positives = 272/293 (92%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGT 60
MGSL +LR+PDD+YPLLK+K A +AEKQIPPEPHW FCYSMLHKVSRSF+LVIQQL T
Sbjct: 1 MGSLGTMLRYPDDIYPLLKMKRAIEKAEKQIPPEPHWGFCYSMLHKVSRSFSLVIQQLNT 60
Query: 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMD 120
+LRNAVC+FYLVLRALDTVEDDTSIPTD KVPILIAFHRH+YD +WH+SCGTKEYK+LMD
Sbjct: 61 ELRNAVCVFYLVLRALDTVEDDTSIPTDEKVPILIAFHRHIYDTDWHYSCGTKEYKILMD 120
Query: 121 QFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGL 180
QFHHVS AFLEL KGYQ+AIE+IT+RMGAGMAKFIC+EVE++DDYDEYC+YVAGLVGLGL
Sbjct: 121 QFHHVSAAFLELEKGYQEAIEEITRRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGLGL 180
Query: 181 SKLFYASGTEDLAPD--SLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
SKLF A+G+E L PD ++SNSMGLFLQKTNIIRDYLEDINEIPK RMFWPREIW KY +
Sbjct: 181 SKLFLAAGSEVLTPDWEAISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKYAD 240
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
KLEDLKYEEN++K+VQCLN+MVTNALMH+EDCLKYM +LRD +IFRFCAIPQ+
Sbjct: 241 KLEDLKYEENTNKSVQCLNEMVTNALMHIEDCLKYMVSLRDPSIFRFCAIPQI 293
>TAIR|locus:2139534 [details] [associations]
symbol:SQS2 "squalene synthase 2" species:3702
"Arabidopsis thaliana" [GO:0004310 "farnesyl-diphosphate
farnesyltransferase activity" evidence=IEA;IGI;ISS;IDA] [GO:0008610
"lipid biosynthetic process" evidence=IEA] [GO:0009058
"biosynthetic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016126 "sterol biosynthetic process"
evidence=ISS] InterPro:IPR002060 InterPro:IPR006449 Pfam:PF00494
GO:GO:0016021 EMBL:CP002687 Gene3D:1.10.600.10 InterPro:IPR008949
SUPFAM:SSF48576 GO:GO:0016126 EMBL:AL161585 EMBL:AL023094 KO:K00801
ProtClustDB:CLSN2685914 GO:GO:0004310 TIGRFAMs:TIGR01559
HSSP:P37268 IPI:IPI00518901 PIR:E85408 PIR:T05285
RefSeq:NP_195191.2 UniGene:At.54604 ProteinModelPortal:O65688
SMR:O65688 STRING:O65688 PRIDE:O65688 EnsemblPlants:AT4G34650.1
GeneID:829617 KEGG:ath:AT4G34650 TAIR:At4g34650 InParanoid:O65688
OMA:SYVNDET PhylomeDB:O65688 ArrayExpress:O65688
Genevestigator:O65688 Uniprot:O65688
Length = 413
Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
Identities = 230/293 (78%), Positives = 263/293 (89%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGT 60
MGSL+ +LRHPD+LYPLLKLK+A +A+KQIP EPH AFCYS+LHKVS+SF+LVIQQLGT
Sbjct: 1 MGSLSTILRHPDELYPLLKLKLAITKAQKQIPLEPHLAFCYSILHKVSKSFSLVIQQLGT 60
Query: 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMD 120
+LRNAVC+FYL+LRALDTVEDDTS+P ++KVPILIAFHRH+YD +WHFSCGTKEYK+LMD
Sbjct: 61 ELRNAVCVFYLILRALDTVEDDTSVPVEIKVPILIAFHRHIYDGDWHFSCGTKEYKLLMD 120
Query: 121 QFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGL 180
QFHHVS AFL+L KGYQ+AIEDITKRMGAGMAKFICKEVE+IDDYDEYC+Y AGLVGLGL
Sbjct: 121 QFHHVSAAFLKLEKGYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYAAGLVGLGL 180
Query: 181 SKLFYASGTEDLAPD--SLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
SK+F AS E L PD +SNS GLFLQKTNII+DYLEDINE PK RMFWPREIW KYV+
Sbjct: 181 SKIFIASELEILTPDWKQISNSTGLFLQKTNIIKDYLEDINERPKSRMFWPREIWGKYVD 240
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
KLED K EE + KAVQCLN+MVTNAL HVEDCLK +++LRD AIF+ CAIPQ+
Sbjct: 241 KLEDFKNEEKATKAVQCLNEMVTNALNHVEDCLKSLASLRDPAIFQSCAIPQI 293
>UNIPROTKB|F1NFJ9 [details] [associations]
symbol:FDFT1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004310 "farnesyl-diphosphate farnesyltransferase
activity" evidence=IEA] [GO:0008610 "lipid biosynthetic process"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA]
InterPro:IPR002060 InterPro:IPR006449 InterPro:IPR019845
Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045 GO:GO:0005783
GO:GO:0016021 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
GO:GO:0008610 GO:GO:0004310 TIGRFAMs:TIGR01559 OMA:ELRHAVC
GeneTree:ENSGT00390000016034 EMBL:AADN02018292 EMBL:AADN02018293
IPI:IPI00570752 Ensembl:ENSGALT00000026894 Uniprot:F1NFJ9
Length = 418
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 155/291 (53%), Positives = 203/291 (69%)
Query: 8 LRHPDDLYPLLKLKMAS-RQAEKQIPPEP---HWAFCYSMLHKVSRSFALVIQQLGTDLR 63
L HP+D+Y LL+ KM R ++ P+ CY L++ SRSFA VIQ L +LR
Sbjct: 8 LGHPEDIYHLLRFKMGGYRAVMPRMDPDSLGLGLRICYRYLNQTSRSFAAVIQALDGELR 67
Query: 64 NAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFH 123
+AVCIFYLVLRALDT+EDD +I DVKVP+L FH ++Y EW + ++++ +++ F
Sbjct: 68 HAVCIFYLVLRALDTIEDDMTISLDVKVPMLNEFHSYLYQPEWKYMDSKEKHRQVLEDFP 127
Query: 124 HVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKL 183
+S F L K YQD I DI +MG GMA+F+ K+V+S ++D YC+YVAGLVG+GLS+L
Sbjct: 128 TISMEFRNLAKVYQDVISDICHKMGVGMAEFLEKKVDSQSEWDRYCHYVAGLVGIGLSRL 187
Query: 184 FYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKL 240
F AS ED + D+ L+NSMGLFLQKTNIIRDYLED E R FWPRE+WS+Y KL
Sbjct: 188 FSASELEDPIVGQDTELANSMGLFLQKTNIIRDYLEDQLE---GREFWPREVWSRYTKKL 244
Query: 241 EDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
DL EN D AVQC+N+++TNAL HV D L Y+S L++ ++F FCAIPQV
Sbjct: 245 SDLTKPENIDMAVQCMNELITNALRHVPDVLTYLSRLKNQSVFNFCAIPQV 295
>MGI|MGI:102706 [details] [associations]
symbol:Fdft1 "farnesyl diphosphate farnesyl transferase 1"
species:10090 "Mus musculus" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004310 "farnesyl-diphosphate farnesyltransferase
activity" evidence=ISO] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0006629 "lipid metabolic process" evidence=IEA]
[GO:0006694 "steroid biosynthetic process" evidence=IEA]
[GO:0006695 "cholesterol biosynthetic process" evidence=ISO]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008202 "steroid
metabolic process" evidence=IEA] [GO:0008203 "cholesterol metabolic
process" evidence=IEA] [GO:0008299 "isoprenoid biosynthetic
process" evidence=IEA] [GO:0008610 "lipid biosynthetic process"
evidence=IEA] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016126 "sterol biosynthetic process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016765
"transferase activity, transferring alkyl or aryl (other than
methyl) groups" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0045338 "farnesyl
diphosphate metabolic process" evidence=ISO] [GO:0051996 "squalene
synthase activity" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR002060 InterPro:IPR006449
InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045
MGI:MGI:102706 GO:GO:0016021 GO:GO:0005789 Gene3D:1.10.600.10
InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0016491 GO:GO:0006695
EMBL:CH466535 GO:GO:0045338 GO:GO:0008299 UniPathway:UPA00767
eggNOG:COG1562 HOGENOM:HOG000186940 KO:K00801 GO:GO:0004310
GO:GO:0051996 TIGRFAMs:TIGR01559 HOVERGEN:HBG002370
OrthoDB:EOG4QVCC2 OMA:ELRHAVC CTD:2222 EMBL:D29016 EMBL:AK076062
EMBL:AK146766 EMBL:AK158633 EMBL:AK168629 EMBL:AK169317
EMBL:BC054722 EMBL:BC138301 EMBL:BC138302 IPI:IPI00134836
PIR:S52075 RefSeq:NP_034321.2 UniGene:Mm.474432
ProteinModelPortal:P53798 SMR:P53798 STRING:P53798
PhosphoSite:P53798 PaxDb:P53798 PRIDE:P53798
Ensembl:ENSMUST00000054963 GeneID:14137 KEGG:mmu:14137
GeneTree:ENSGT00390000016034 InParanoid:Q8BPF5 ChEMBL:CHEMBL4778
NextBio:285250 Bgee:P53798 CleanEx:MM_FDFT1 Genevestigator:P53798
GermOnline:ENSMUSG00000021273 Uniprot:P53798
Length = 416
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 150/291 (51%), Positives = 197/291 (67%)
Query: 8 LRHPDDLYPLLKLKMASRQ--AEK--QIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLR 63
L HP++ Y LL+ +M R+ K Q CY L++ SRSFA VIQ L D+R
Sbjct: 7 LGHPEEFYNLLRFRMGGRRNFIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGDIR 66
Query: 64 NAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFH 123
+A+C+FYLVLRALDTVEDD SI + K+P+L FH +YD EW F+ ++ + +++ F
Sbjct: 67 HAICVFYLVLRALDTVEDDMSISVEKKIPLLCNFHTFLYDPEWRFTESKEKDRQVLEDFP 126
Query: 124 HVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKL 183
+S F L + YQ I+DI RMG GMA+F+ K+V S D+D+YC+YVAGLVG+GLS+L
Sbjct: 127 TISLEFRNLAEKYQTVIDDICHRMGCGMAEFVDKDVTSKQDWDKYCHYVAGLVGIGLSRL 186
Query: 184 FYASGTED--LAPD-SLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKL 240
F AS ED + D +NSMGLFLQKTNIIRDYLED E R FWP+E+W +Y+ KL
Sbjct: 187 FSASEFEDPIVGEDIECANSMGLFLQKTNIIRDYLEDQQE---GRKFWPQEVWGRYIKKL 243
Query: 241 EDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
ED EN D AVQCLN+++TN L H+ D L Y+S LR+ ++F FCAIPQV
Sbjct: 244 EDFAKPENVDVAVQCLNELITNTLQHIPDVLTYLSRLRNQSVFNFCAIPQV 294
>RGD|61834 [details] [associations]
symbol:Fdft1 "farnesyl diphosphate farnesyl transferase 1"
species:10116 "Rattus norvegicus" [GO:0004310 "farnesyl-diphosphate
farnesyltransferase activity" evidence=IDA;IMP] [GO:0005783
"endoplasmic reticulum" evidence=ISO] [GO:0005789 "endoplasmic
reticulum membrane" evidence=IEA] [GO:0006695 "cholesterol
biosynthetic process" evidence=IMP;TAS] [GO:0008299 "isoprenoid
biosynthetic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] [GO:0045338 "farnesyl diphosphate metabolic process"
evidence=IMP] [GO:0051996 "squalene synthase activity" evidence=IEA]
InterPro:IPR002060 InterPro:IPR006449 InterPro:IPR019845
Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045 RGD:61834 GO:GO:0043231
GO:GO:0016021 GO:GO:0005789 Gene3D:1.10.600.10 InterPro:IPR008949
SUPFAM:SSF48576 GO:GO:0016491 GO:GO:0006695 GO:GO:0045338
GO:GO:0008299 UniPathway:UPA00767 eggNOG:COG1562
HOGENOM:HOG000186940 KO:K00801 GO:GO:0004310 GO:GO:0051996
TIGRFAMs:TIGR01559 HOVERGEN:HBG002370 OrthoDB:EOG4QVCC2 OMA:ELRHAVC
CTD:2222 GeneTree:ENSGT00390000016034 EMBL:M95591 EMBL:BC081810
IPI:IPI00210233 PIR:A45105 RefSeq:NP_062111.1 UniGene:Rn.154404
ProteinModelPortal:Q02769 SMR:Q02769 STRING:Q02769 PRIDE:Q02769
Ensembl:ENSRNOT00000032089 GeneID:29580 KEGG:rno:29580
UCSC:RGD:61834 InParanoid:Q02769 BindingDB:Q02769 ChEMBL:CHEMBL3815
NextBio:609686 Genevestigator:Q02769 GermOnline:ENSRNOG00000021314
Uniprot:Q02769
Length = 416
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 149/293 (50%), Positives = 200/293 (68%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y LL+ +M R+ IP + CY L + SRSFA VIQ L D
Sbjct: 7 LGHPEEFYNLLRFRMGGRR--NFIPKMDRNSLSNSLKTCYKYLDQTSRSFAAVIQALDGD 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+R+AVC+FYL+LRA+DTVEDD +I + K+P+L FH +Y+ EW F+ ++++V+++
Sbjct: 65 IRHAVCVFYLILRAMDTVEDDMAISVEKKIPLLRNFHTFLYEPEWRFTESKEKHRVVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F L + YQ I DI RMG GMA+F+ K+V S D+D+YC+YVAGLVG+GLS
Sbjct: 125 FPTISLEFRNLAEKYQTVIADICHRMGCGMAEFLNKDVTSKQDWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED E R FWP+E+W KYV
Sbjct: 185 RLFSASEFEDPIVGEDTECANSMGLFLQKTNIIRDYLEDQQE---GRQFWPQEVWGKYVK 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
KLED EN D AV+CLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQV
Sbjct: 242 KLEDFVKPENVDVAVKCLNELITNALQHIPDVITYLSRLRNQSVFNFCAIPQV 294
>UNIPROTKB|Q6IE76 [details] [associations]
symbol:fdft1 "FDFT1 protein" species:9913 "Bos taurus"
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008610 "lipid
biosynthetic process" evidence=IEA] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=IEA]
InterPro:IPR002060 InterPro:IPR006449 InterPro:IPR019845
Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045 GO:GO:0005783
GO:GO:0016021 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
GO:GO:0008610 KO:K00801 GO:GO:0004310 TIGRFAMs:TIGR01559
UniGene:Bt.14255 HOVERGEN:HBG002370 OMA:ELRHAVC CTD:2222
GeneTree:ENSGT00390000016034 EMBL:DAAA02021921 EMBL:BN000317
IPI:IPI00852555 RefSeq:NP_001013022.1 SMR:Q6IE76 STRING:Q6IE76
Ensembl:ENSBTAT00000016504 GeneID:281767 KEGG:bta:281767
InParanoid:Q6IE76 ChEMBL:CHEMBL3605 NextBio:20805683 Uniprot:Q6IE76
Length = 417
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 148/293 (50%), Positives = 199/293 (67%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y LL+ +M R+ K IP + CY L++ SRSFA VIQ L +
Sbjct: 7 LGHPEEFYNLLRFQMGGRR--KVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+R+AVCIFYLVLRALDT+EDD +I + KVP+L FH ++Y+ +W F+ ++ + +++
Sbjct: 65 MRHAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESKEKDRQVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F L + YQ I D+ ++MG GMA+F+ K V S ++D+YC+YVAGLVG+GLS
Sbjct: 125 FPTISLEFRNLAEKYQTVIVDVCQKMGFGMAEFLDKRVTSEREWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED E R FWP+E WSKYV
Sbjct: 185 RLFSASELEDPLIGEDTERANSMGLFLQKTNIIRDYLEDQRE---GREFWPQETWSKYVK 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
KL D EN D AVQCLN+++TN L H+ D + Y+S LR+ +IF FCAIPQV
Sbjct: 242 KLGDFAKPENIDLAVQCLNELITNTLHHIPDVITYLSRLRNQSIFNFCAIPQV 294
>UNIPROTKB|I3LFX7 [details] [associations]
symbol:FDFT1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0008610 "lipid
biosynthetic process" evidence=IEA] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=IEA]
InterPro:IPR002060 InterPro:IPR006449 InterPro:IPR019845
Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045 GO:GO:0005783
GO:GO:0016021 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
GO:GO:0008610 GO:GO:0004310 TIGRFAMs:TIGR01559 OMA:ELRHAVC
GeneTree:ENSGT00390000016034 EMBL:FP476104
Ensembl:ENSSSCT00000024166 Uniprot:I3LFX7
Length = 417
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 147/293 (50%), Positives = 200/293 (68%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y LL+ +M R+ K IP + CY L++ SRSFA VIQ L +
Sbjct: 7 LGHPEEFYNLLRFQMGGRR--KVIPKMNQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+R+AVCIFYLVLRALDT+EDD +I + K+P+L FH H+Y+ +W F+ ++ + +++
Sbjct: 65 MRHAVCIFYLVLRALDTLEDDMTISIEKKIPLLHNFHLHLYESDWRFTESKEKDRQVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F ++ F L + YQ I D+ ++MG GMA+F+ K V S ++D+YC+YVAGLVG+GLS
Sbjct: 125 FPTIALEFRNLAEKYQVVIVDVCRKMGFGMAEFLNKHVTSEREWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED E R FWP+E+WSKYV
Sbjct: 185 RLFSASELEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQE---GREFWPQEVWSKYVK 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
KL D EN D AVQCLN++VT+ L H+ D + Y+S LR+ +IF FCAIPQV
Sbjct: 242 KLGDFAKPENVDLAVQCLNELVTSTLHHIPDVITYLSRLRNQSIFNFCAIPQV 294
>UNIPROTKB|Q32KR6 [details] [associations]
symbol:FDFT1 "Squalene synthase" species:9913 "Bos taurus"
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA]
[GO:0051996 "squalene synthase activity" evidence=IEA] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008299 "isoprenoid
biosynthetic process" evidence=IEA] [GO:0006695 "cholesterol
biosynthetic process" evidence=IEA] InterPro:IPR002060
InterPro:IPR006449 InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044
PROSITE:PS01045 GO:GO:0016021 GO:GO:0005789 Gene3D:1.10.600.10
InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0016491 GO:GO:0006695
GO:GO:0008299 UniPathway:UPA00767 eggNOG:COG1562
HOGENOM:HOG000186940 GO:GO:0004310 GO:GO:0051996 TIGRFAMs:TIGR01559
EMBL:BC109959 IPI:IPI01028010 UniGene:Bt.14255
ProteinModelPortal:Q32KR6 SMR:Q32KR6 STRING:Q32KR6 PRIDE:Q32KR6
HOVERGEN:HBG002370 InParanoid:Q32KR6 OrthoDB:EOG4QVCC2
Uniprot:Q32KR6
Length = 417
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 148/293 (50%), Positives = 199/293 (67%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y LL+ +M R+ K IP + CY L++ SRSFA VIQ L +
Sbjct: 7 LGHPEEFYNLLRFQMGGRR--KVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+R+AVCIFYLVLRALDT+EDD +I + KVP+L FH ++Y+ +W F+ ++ + +++
Sbjct: 65 MRHAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESKEKDRQVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F L + YQ I D+ ++MG GMA+F+ K V S ++D+YC+YVAGLVG+GLS
Sbjct: 125 FPTISLEFRNLAEKYQTVIVDVCQKMGFGMAEFLDKRVTSEREWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED E R FWP+E WSKYV
Sbjct: 185 RLFPASELEDPLIGEDTERANSMGLFLQKTNIIRDYLEDQRE---GREFWPQETWSKYVK 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
KL D EN D AVQCLN+++TN L H+ D + Y+S LR+ +IF FCAIPQV
Sbjct: 242 KLGDFAKPENIDLAVQCLNELITNTLHHIPDVITYLSRLRNQSIFNFCAIPQV 294
>UNIPROTKB|E9PNM1 [details] [associations]
symbol:FDFT1 "Squalene synthase" species:9606 "Homo
sapiens" [GO:0004310 "farnesyl-diphosphate farnesyltransferase
activity" evidence=IEA] [GO:0008610 "lipid biosynthetic process"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA]
InterPro:IPR002060 InterPro:IPR006449 InterPro:IPR019845
Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045 GO:GO:0005783
GO:GO:0016021 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
GO:GO:0008610 GO:GO:0004310 TIGRFAMs:TIGR01559 HGNC:HGNC:3629
ChiTaRS:FDFT1 EMBL:AC069185 IPI:IPI00976521
ProteinModelPortal:E9PNM1 SMR:E9PNM1 Ensembl:ENST00000525900
ArrayExpress:E9PNM1 Bgee:E9PNM1 Uniprot:E9PNM1
Length = 410
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 143/287 (49%), Positives = 194/287 (67%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVC 67
L HP++ Y L++ ++ ++ + CY L++ SRSFA VIQ L ++RNAVC
Sbjct: 7 LGHPEEFYNLVRFRIGGKRKDSL---SSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVC 63
Query: 68 IFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVST 127
IFYLVLRALDT+EDD +I + KVP+L FH +Y +W F ++ + +++ F +S
Sbjct: 64 IFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISL 123
Query: 128 AFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYAS 187
F L + YQ I DI +RMG GMA+F+ K V S ++D+YC+YVAGLVG+GLS+LF AS
Sbjct: 124 EFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSAS 183
Query: 188 GTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLK 244
ED + D+ +NSMGLFLQKTNIIRDYLED R FWP+E+WS+YV KL D
Sbjct: 184 EFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQG---GREFWPQEVWSRYVKKLGDFA 240
Query: 245 YEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
EN D AVQCLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQV
Sbjct: 241 KPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQV 287
>UNIPROTKB|P37268 [details] [associations]
symbol:FDFT1 "Squalene synthase" species:9606 "Homo
sapiens" [GO:0008299 "isoprenoid biosynthetic process"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0051996
"squalene synthase activity" evidence=IEA] [GO:0045338 "farnesyl
diphosphate metabolic process" evidence=IEA] [GO:0006694 "steroid
biosynthetic process" evidence=TAS] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=TAS]
[GO:0005789 "endoplasmic reticulum membrane" evidence=TAS]
[GO:0006695 "cholesterol biosynthetic process" evidence=TAS]
[GO:0044255 "cellular lipid metabolic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0005783 "endoplasmic reticulum" evidence=IDA]
Reactome:REACT_111217 InterPro:IPR002060 InterPro:IPR006449
InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045
GO:GO:0016021 GO:GO:0005789 Gene3D:1.10.600.10 InterPro:IPR008949
SUPFAM:SSF48576 GO:GO:0016491 GO:GO:0044255 GO:GO:0006695
GO:GO:0045338 GO:GO:0008299 UniPathway:UPA00767 eggNOG:COG1562
KO:K00801 GO:GO:0004310 GO:GO:0051996 TIGRFAMs:TIGR01559
HOVERGEN:HBG002370 OrthoDB:EOG4QVCC2 OMA:ELRHAVC EMBL:L06070
EMBL:L06105 EMBL:X69141 EMBL:S76822 EMBL:BC003573 EMBL:BC009251
EMBL:BC029641 IPI:IPI00020944 PIR:A45998 PIR:I38245 PIR:I52090
RefSeq:NP_004453.3 UniGene:Hs.593928 PDB:1EZF PDB:3ASX PDB:3LEE
PDB:3Q2Z PDB:3Q30 PDB:3V66 PDB:3VJ8 PDB:3VJ9 PDB:3VJA PDB:3VJB
PDB:3VJC PDBsum:1EZF PDBsum:3ASX PDBsum:3LEE PDBsum:3Q2Z
PDBsum:3Q30 PDBsum:3V66 PDBsum:3VJ8 PDBsum:3VJ9 PDBsum:3VJA
PDBsum:3VJB PDBsum:3VJC ProteinModelPortal:P37268 SMR:P37268
IntAct:P37268 MINT:MINT-1401726 STRING:P37268 PhosphoSite:P37268
DMDM:585126 PaxDb:P37268 PeptideAtlas:P37268 PRIDE:P37268
DNASU:2222 Ensembl:ENST00000220584 GeneID:2222 KEGG:hsa:2222
UCSC:uc003wuh.3 CTD:2222 GeneCards:GC08P011653 H-InvDB:HIX0168873
HGNC:HGNC:3629 HPA:HPA008874 MIM:184420 neXtProt:NX_P37268
PharmGKB:PA28073 InParanoid:P37268 PhylomeDB:P37268
BioCyc:MetaCyc:HS01329-MONOMER SABIO-RK:P37268 BindingDB:P37268
ChEMBL:CHEMBL3338 ChiTaRS:FDFT1 EvolutionaryTrace:P37268
GenomeRNAi:2222 NextBio:9013 ArrayExpress:P37268 Bgee:P37268
CleanEx:HS_FDFT1 Genevestigator:P37268 GermOnline:ENSG00000079459
Uniprot:P37268
Length = 417
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 145/293 (49%), Positives = 197/293 (67%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y L++ ++ ++ K +P + CY L++ SRSFA VIQ L +
Sbjct: 7 LGHPEEFYNLVRFRIGGKR--KVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+RNAVCIFYLVLRALDT+EDD +I + KVP+L FH +Y +W F ++ + +++
Sbjct: 65 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F L + YQ I DI +RMG GMA+F+ K V S ++D+YC+YVAGLVG+GLS
Sbjct: 125 FPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED R FWP+E+WS+YV
Sbjct: 185 RLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQG---GREFWPQEVWSRYVK 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
KL D EN D AVQCLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQV
Sbjct: 242 KLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQV 294
>UNIPROTKB|E2R6N6 [details] [associations]
symbol:FDFT1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0008610 "lipid
biosynthetic process" evidence=IEA] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=IEA]
InterPro:IPR002060 InterPro:IPR006449 InterPro:IPR019845
Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045 GO:GO:0005783
GO:GO:0016021 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
GO:GO:0008610 KO:K00801 GO:GO:0004310 TIGRFAMs:TIGR01559
OMA:ELRHAVC CTD:2222 GeneTree:ENSGT00390000016034 EMBL:AAEX03014318
RefSeq:XP_534557.2 Ensembl:ENSCAFT00000012705 GeneID:477362
KEGG:cfa:477362 NextBio:20852865 Uniprot:E2R6N6
Length = 417
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 144/293 (49%), Positives = 198/293 (67%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTD 61
L P++ Y LL+ +M R+ K IP + CY L++ SRSFA VI+ L +
Sbjct: 7 LGRPEEFYNLLRFQMGGRR--KVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIEALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+R+AVCIFYLVLRALDT+EDD +I + KVP+L FH ++Y+ +W + ++ + +++
Sbjct: 65 MRHAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSYLYEPDWRYMESKEKDRQVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F L + YQ I DI ++MG GMA+F+ K V S ++D+YC+YVAGLVG+GLS
Sbjct: 125 FPTISLEFRNLAEKYQTVIVDICRKMGFGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED-LAPDSL--SNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED L + + +NSMGLFLQKTNIIRDYLED E R FWP+E+WSKYV
Sbjct: 185 RLFSASELEDPLVGEDIECANSMGLFLQKTNIIRDYLEDQRE---GREFWPQEVWSKYVK 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
KL D +N D AVQCLN+++TNAL H+ + Y+S LR+ ++F FCAIPQV
Sbjct: 242 KLGDFAKPQNIDSAVQCLNELITNALHHIPHVITYLSRLRNQSVFNFCAIPQV 294
>ZFIN|ZDB-GENE-081104-242 [details] [associations]
symbol:si:ch73-107c13.2 "si:ch73-107c13.2"
species:7955 "Danio rerio" [GO:0016740 "transferase activity"
evidence=IEA] [GO:0008610 "lipid biosynthetic process"
evidence=IEA] [GO:0016765 "transferase activity, transferring alkyl
or aryl (other than methyl) groups" evidence=IEA] [GO:0009058
"biosynthetic process" evidence=IEA] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR002060
InterPro:IPR006449 InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044
PROSITE:PS01045 ZFIN:ZDB-GENE-081104-242 GO:GO:0016021
Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0008610
HOGENOM:HOG000186940 KO:K00801 GO:GO:0004310 TIGRFAMs:TIGR01559
HOVERGEN:HBG002370 OrthoDB:EOG4QVCC2 OMA:ELRHAVC
GeneTree:ENSGT00390000016034 EMBL:CU207296 IPI:IPI00507562
RefSeq:NP_001189454.1 UniGene:Dr.20618 Ensembl:ENSDART00000084724
GeneID:571911 KEGG:dre:571911 NextBio:20890752 Uniprot:B8JKU0
Length = 418
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 145/293 (49%), Positives = 200/293 (68%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTD 61
L HP+++ L + K+ +A +P + + CY+ L++ SRSFA VIQ L +
Sbjct: 7 LGHPEEIINLFRYKLGGCRAV--MPKLDYDSMSDTLRTCYAYLNQTSRSFAAVIQALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
LR+AVCIFYLVLRALDTVEDD SIP + K+P+L FH +Y EW FS ++ + +++
Sbjct: 65 LRHAVCIFYLVLRALDTVEDDMSIPLEQKLPLLQDFHTFLYQPEWSFSQSREKDRRVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F LG+ Y++ I DI RMG GMA+F+ K+V S+ ++D+YC+YVAGLVG+GLS
Sbjct: 125 FPTISVEFRNLGQEYREVISDICHRMGVGMAEFLEKKVSSMKEWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS E+ + D+ L+NSMGLFLQKTNIIRDYLED + R FWP E WS+Y +
Sbjct: 185 RLFSASQLEEPEVGRDTELANSMGLFLQKTNIIRDYLEDQQQ---GRAFWPEEAWSQYAS 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
LEDL ++ A+ CLN +VT+AL HV D + Y+S LR+ ++F FCAIPQV
Sbjct: 242 GLEDLAQPQHLSSALSCLNLLVTDALRHVPDVMLYLSRLRNQSVFNFCAIPQV 294
>DICTYBASE|DDB_G0292072 [details] [associations]
symbol:fdfT "farnesyl-diphosphate
farnesyltransferase" species:44689 "Dictyostelium discoideum"
[GO:0016765 "transferase activity, transferring alkyl or aryl
(other than methyl) groups" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA;ISS] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0008610 "lipid biosynthetic process" evidence=IEA] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity"
evidence=IEA;ISS] [GO:0051996 "squalene synthase activity"
evidence=IEA] [GO:0006695 "cholesterol biosynthetic process"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0016126 "sterol biosynthetic process" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0008299 "isoprenoid biosynthetic
process" evidence=IEA] [GO:0008203 "cholesterol metabolic process"
evidence=IEA] [GO:0008202 "steroid metabolic process" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0006694 "steroid
biosynthetic process" evidence=IEA] [GO:0006629 "lipid metabolic
process" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR002060
InterPro:IPR006449 InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044
PROSITE:PS01045 dictyBase:DDB_G0292072 GO:GO:0016021
GenomeReviews:CM000155_GR GO:GO:0005789 Gene3D:1.10.600.10
InterPro:IPR008949 SUPFAM:SSF48576 EMBL:AAFI02000187 GO:GO:0016491
GO:GO:0006695 GO:GO:0008299 UniPathway:UPA00767 eggNOG:COG1562
KO:K00801 GO:GO:0004310 GO:GO:0051996 TIGRFAMs:TIGR01559
RefSeq:XP_629811.1 HSSP:P37268 ProteinModelPortal:Q54DR1
STRING:Q54DR1 EnsemblProtists:DDB0231376 GeneID:8628492
KEGG:ddi:DDB_G0292072 OMA:ELRHAVC ProtClustDB:CLSZ2429473
Uniprot:Q54DR1
Length = 416
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 141/291 (48%), Positives = 191/291 (65%)
Query: 8 LRHPDDLYPLLKLKMA-SRQAEKQIPPE-PHWAFCYSMLHKVSRSFALVIQQLGTDLRNA 65
L HPD+ LLK+ S + + Q+ + +CY +L+K SRSFA VI +L L++A
Sbjct: 7 LAHPDEFLSLLKIGYTESFKPKSQLKENLGNKEWCYELLNKTSRSFAFVINELEPSLKDA 66
Query: 66 VCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWH-FSCG-TKEYKVLMDQFH 123
+CIFYLVLR LDT+EDDT++ + K+P+L +F +Y + F G + K L++ F
Sbjct: 67 ICIFYLVLRGLDTIEDDTTVELNTKLPVLTSFSEGLYQPGYKVFGYGMNNDEKNLVENFD 126
Query: 124 HVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKL 183
V FL LG GY I DIT+RM GM++F+ K V ++ ++D YC+YVAGLVG+GLSK+
Sbjct: 127 KVVDVFLGLGDGYCTIIHDITRRMANGMSEFLQKSVVTLPEWDLYCHYVAGLVGIGLSKI 186
Query: 184 FYASGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKL 240
F+ASG E D SN MGLFLQKTNIIRDYLEDINE K R+FWPR++W++Y L
Sbjct: 187 FHASGLESEWFATADDESNQMGLFLQKTNIIRDYLEDINE--K-RIFWPRDVWARYTLHL 243
Query: 241 EDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
E+ K + A+ CLND++TNAL H L YMS L++ + FCAIPQV
Sbjct: 244 ENFKEAKYQIPALHCLNDLITNALSHALIALDYMSRLKNPQVINFCAIPQV 294
>UNIPROTKB|B7Z1J3 [details] [associations]
symbol:FDFT1 "Squalene synthase" species:9606 "Homo
sapiens" [GO:0008610 "lipid biosynthetic process" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0045338 "farnesyl diphosphate metabolic process"
evidence=IEA] InterPro:IPR002060 InterPro:IPR006449
InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045
GO:GO:0016021 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
GO:GO:0008610 GO:GO:0045338 GO:GO:0004310 TIGRFAMs:TIGR01559
HOVERGEN:HBG002370 UniGene:Hs.593928 HGNC:HGNC:3629 ChiTaRS:FDFT1
EMBL:AC069185 EMBL:AK293545 EMBL:AK315993 EMBL:AK316351
EMBL:AK316531 IPI:IPI01022304 SMR:B7Z1J3 STRING:B7Z1J3
Ensembl:ENST00000528812 Ensembl:ENST00000530664 Uniprot:B7Z1J3
Length = 353
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 126/233 (54%), Positives = 165/233 (70%)
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+RNAVCIFYLVLRALDT+EDD +I + KVP+L FH +Y +W F ++ + +++
Sbjct: 1 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLED 60
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F L + YQ I DI +RMG GMA+F+ K V S ++D+YC+YVAGLVG+GLS
Sbjct: 61 FPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLS 120
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED R FWP+E+WS+YV
Sbjct: 121 RLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQG---GREFWPQEVWSRYVK 177
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
KL D EN D AVQCLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQV
Sbjct: 178 KLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQV 230
>POMBASE|SPBC646.05c [details] [associations]
symbol:erg9 "squalene synthase Erg9 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=IGI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005783
"endoplasmic reticulum" evidence=IGI;IDA] [GO:0005789 "endoplasmic
reticulum membrane" evidence=IDA] [GO:0006696 "ergosterol
biosynthetic process" evidence=IGI] [GO:0008299 "isoprenoid
biosynthetic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0042175 "nuclear outer membrane-endoplasmic
reticulum membrane network" evidence=IDA] [GO:0051996 "squalene
synthase activity" evidence=IEA] InterPro:IPR002060
InterPro:IPR006449 InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044
PROSITE:PS01045 PomBase:SPBC646.05c GO:GO:0016021 GO:GO:0005789
Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576 EMBL:CU329671
GO:GO:0016491 GenomeReviews:CU329671_GR GO:GO:0006696 GO:GO:0008299
UniPathway:UPA00767 eggNOG:COG1562 HOGENOM:HOG000186940 KO:K00801
GO:GO:0004310 GO:GO:0051996 TIGRFAMs:TIGR01559 OMA:ELRHAVC
EMBL:L06071 PIR:B48057 PIR:T40581 RefSeq:NP_595363.1
ProteinModelPortal:P36596 IntAct:P36596 MINT:MINT-3377067
STRING:P36596 EnsemblFungi:SPBC646.05c.1 GeneID:2541110
KEGG:spo:SPBC646.05c OrthoDB:EOG4BP4MQ NextBio:20802223
Uniprot:P36596
Length = 460
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 134/264 (50%), Positives = 179/264 (67%)
Query: 40 CYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHR 99
CY +L SRSFA+VI++L +R AV IFYLVLR LDTVEDD ++P D K+PIL F++
Sbjct: 38 CYQLLDMTSRSFAVVIKELPNGIREAVMIFYLVLRGLDTVEDDMTLPLDKKLPILRDFYK 97
Query: 100 HVYDREWHFS-CGTKEY-KVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKF--I 155
+ W F+ G E + L+ +F V +L L +GY++ I +ITK MG GMA + +
Sbjct: 98 TIEVEGWTFNESGPNEKDRQLLVEFDVVIKEYLNLSEGYRNVISNITKEMGDGMAYYASL 157
Query: 156 CKE-----VESIDDYDEYCYYVAGLVGLGLSKLFYASGTED--LA-PDSLSNSMGLFLQK 207
++ VE+I+D+++YC+YVAGLVG+GLS+LF S ED LA ++SNS+GLFLQK
Sbjct: 158 AEKNDGFSVETIEDFNKYCHYVAGLVGIGLSRLFAQSKLEDPDLAHSQAISNSLGLFLQK 217
Query: 208 TNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHV 267
NIIRDY ED ++ R FWPREIWSKY + DL +NS+KA++CL+DM NAL H
Sbjct: 218 VNIIRDYREDFDDN---RHFWPREIWSKYTSSFGDLCLPDNSEKALECLSDMTANALTHA 274
Query: 268 EDCLKYMSALRDHAIFRFCAIPQV 291
D L Y+S L+ IF FCAIPQV
Sbjct: 275 TDALVYLSQLKTQEIFNFCAIPQV 298
>UNIPROTKB|B4DJE5 [details] [associations]
symbol:FDFT1 "cDNA FLJ50548, highly similar to Squalene
synthetase (EC 2.5.1.21)" species:9606 "Homo sapiens" [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=IEA]
[GO:0008610 "lipid biosynthetic process" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IDA] InterPro:IPR002060 InterPro:IPR006449
InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045
GO:GO:0005783 GO:GO:0016021 Gene3D:1.10.600.10 InterPro:IPR008949
SUPFAM:SSF48576 GO:GO:0008610 HOGENOM:HOG000186940 GO:GO:0004310
TIGRFAMs:TIGR01559 HOVERGEN:HBG002370 UniGene:Hs.593928
HGNC:HGNC:3629 ChiTaRS:FDFT1 EMBL:AC069185 EMBL:AK296043
IPI:IPI00908715 SMR:B4DJE5 STRING:B4DJE5 Ensembl:ENST00000443614
UCSC:uc011kxf.2 Uniprot:B4DJE5
Length = 374
Score = 400 (145.9 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 79/138 (57%), Positives = 102/138 (73%)
Query: 157 KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRD 213
K+ + ++D+ YC+YVAGLVG+GLS+LF AS ED + D+ +NSMGLFLQKTNIIRD
Sbjct: 117 KDRQVLEDFPTYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRD 176
Query: 214 YLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKY 273
YLED R FWP+E+WS+YV KL D EN D AVQCLN+++TNAL H+ D + Y
Sbjct: 177 YLEDQQG---GREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITY 233
Query: 274 MSALRDHAIFRFCAIPQV 291
+S LR+ ++F FCAIPQV
Sbjct: 234 LSRLRNQSVFNFCAIPQV 251
Score = 234 (87.4 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 52/120 (43%), Positives = 74/120 (61%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y L++ ++ ++ K +P + CY L++ SRSFA VIQ L +
Sbjct: 7 LGHPEEFYNLVRFRIGGKR--KVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHF-SCGTKEYKVLMD 120
+RNAVCIFYLVLRALDT+EDD +I + KVP+L FH +Y +W F K+ +VL D
Sbjct: 65 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLED 124
>ASPGD|ASPL0000036668 [details] [associations]
symbol:AN10396 species:162425 "Emericella nidulans"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0005789
"endoplasmic reticulum membrane" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=IEA]
[GO:0051996 "squalene synthase activity" evidence=IEA] [GO:0006696
"ergosterol biosynthetic process" evidence=IEA] InterPro:IPR002060
InterPro:IPR006449 InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044
PROSITE:PS01045 GO:GO:0016021 GO:GO:0005741 Gene3D:1.10.600.10
InterPro:IPR008949 SUPFAM:SSF48576 EMBL:BN001306 GO:GO:0008610
GO:GO:0004310 TIGRFAMs:TIGR01559 ProteinModelPortal:C8VHP8
EnsemblFungi:CADANIAT00009666 OMA:FNFVAIP Uniprot:C8VHP8
Length = 470
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 136/305 (44%), Positives = 184/305 (60%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKM----ASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQ 56
+G++ HP +L +++ K+ + EK E A C+ L SRSF+ VI+
Sbjct: 3 LGNIIYFAFHPSELRSIIQWKVWHNPVHERNEKN-ETETQKA-CFKFLDLTSRSFSAVIK 60
Query: 57 QLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYK 116
+L +L VC+FYL LR LDT+EDDTSIP + K P+L F + W F E K
Sbjct: 61 ELHPELLLPVCVFYLALRGLDTIEDDTSIPLETKEPLLRNFKDFLEQDGWTFDGNRPEEK 120
Query: 117 --VLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICK------EVESIDDYDEY 168
L+ QFH+V T F + YQ I+DIT +MG GMA + K V+++++YD Y
Sbjct: 121 DRELLVQFHNVVTEFRNMKPAYQVIIKDITDKMGNGMADYARKATFEDASVKTVEEYDLY 180
Query: 169 CYYVAGLVGLGLSKLFYAS--GTEDLAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCR 225
CYYVAGLVG GL++LF + G L + L SMGLFLQKTNIIRD ED ++ R
Sbjct: 181 CYYVAGLVGEGLTRLFVEAEFGNPALLKRTRLHKSMGLFLQKTNIIRDIREDEDD---GR 237
Query: 226 MFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRF 285
FWP+ IWSK+V+ EDL EN + A+ C ++MV NAL HVEDCL Y++ LR+ ++F F
Sbjct: 238 RFWPKSIWSKHVDNFEDLFKPENREAALNCNSEMVLNALEHVEDCLFYLAGLREQSVFNF 297
Query: 286 CAIPQ 290
CAIPQ
Sbjct: 298 CAIPQ 302
>CGD|CAL0000316 [details] [associations]
symbol:ERG9 species:5476 "Candida albicans" [GO:0005783
"endoplasmic reticulum" evidence=ISS] [GO:0006696 "ergosterol
biosynthetic process" evidence=ISS] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0051996 "squalene
synthase activity" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] InterPro:IPR002060 InterPro:IPR006449
InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045
CGD:CAL0000316 GO:GO:0005783 GO:GO:0016021 GO:GO:0005886
Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0006696
EMBL:AACQ01000103 EMBL:AACQ01000102 KO:K00801 GO:GO:0004310
TIGRFAMs:TIGR01559 RefSeq:XP_714460.1 RefSeq:XP_714509.1
ProteinModelPortal:Q59Y33 STRING:Q59Y33 GeneID:3643854
GeneID:3643913 KEGG:cal:CaO19.11099 KEGG:cal:CaO19.3616
Uniprot:Q59Y33
Length = 448
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 135/309 (43%), Positives = 188/309 (60%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQA---EKQIPPEPHWAFCYSMLHKVSRSFALVIQQ 57
MG +L HP +L +++L RQ K+ + CY +L+ SRSFA VI++
Sbjct: 1 MGKFLQLLSHPTELKAVIQL-FGFRQPLHPGKRDVNDKELVRCYELLNLTSRSFAAVIEE 59
Query: 58 LGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSC-GTKEY- 115
L +LR+AV IFYLVLRALDT+EDD +I + +K+P+L F + + W F G E
Sbjct: 60 LHPELRDAVMIFYLVLRALDTIEDDMTIKSSIKIPLLREFDTKLNTKNWTFDGNGPNEKD 119
Query: 116 KVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYC 169
+ ++ +F + + L YQD I+ IT +MG GMA +I E V +++DY+ YC
Sbjct: 120 RTVLVEFDKILNVYHRLKPQYQDIIKSITFKMGNGMADYILDEEFNVNGVATVEDYNLYC 179
Query: 170 YYVAGLVGLGLSKLFYAS--GTEDLAPDSLS--NSMGLFLQKTNIIRDYLEDINEIPKCR 225
+YVAGLVG GL+ LF + G + L ++ + +SMGLFLQKTNIIRDY ED+ + R
Sbjct: 180 HYVAGLVGEGLTNLFVLANFGDKTLTENNFAKADSMGLFLQKTNIIRDYHEDLQD---GR 236
Query: 226 MFWPREIWSKYVNKLEDLKYEENSDK---AVQCLNDMVTNALMHVEDCLKYMSALRDHAI 282
FWPREIWSKY L+D + K V C+N++V NAL HV DCL Y+S ++D +
Sbjct: 237 SFWPREIWSKYTENLQDFHKVKTPAKEFAGVSCINELVLNALGHVTDCLDYLSLVKDPSS 296
Query: 283 FRFCAIPQV 291
F FCAIPQV
Sbjct: 297 FSFCAIPQV 305
>UNIPROTKB|Q59Y33 [details] [associations]
symbol:ERG9 "Putative uncharacterized protein ERG9"
species:237561 "Candida albicans SC5314" [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=ISS]
[GO:0005783 "endoplasmic reticulum" evidence=ISS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006696 "ergosterol
biosynthetic process" evidence=ISS] InterPro:IPR002060
InterPro:IPR006449 InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044
PROSITE:PS01045 CGD:CAL0000316 GO:GO:0005783 GO:GO:0016021
GO:GO:0005886 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
GO:GO:0006696 EMBL:AACQ01000103 EMBL:AACQ01000102 KO:K00801
GO:GO:0004310 TIGRFAMs:TIGR01559 RefSeq:XP_714460.1
RefSeq:XP_714509.1 ProteinModelPortal:Q59Y33 STRING:Q59Y33
GeneID:3643854 GeneID:3643913 KEGG:cal:CaO19.11099
KEGG:cal:CaO19.3616 Uniprot:Q59Y33
Length = 448
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 135/309 (43%), Positives = 188/309 (60%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQA---EKQIPPEPHWAFCYSMLHKVSRSFALVIQQ 57
MG +L HP +L +++L RQ K+ + CY +L+ SRSFA VI++
Sbjct: 1 MGKFLQLLSHPTELKAVIQL-FGFRQPLHPGKRDVNDKELVRCYELLNLTSRSFAAVIEE 59
Query: 58 LGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSC-GTKEY- 115
L +LR+AV IFYLVLRALDT+EDD +I + +K+P+L F + + W F G E
Sbjct: 60 LHPELRDAVMIFYLVLRALDTIEDDMTIKSSIKIPLLREFDTKLNTKNWTFDGNGPNEKD 119
Query: 116 KVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYC 169
+ ++ +F + + L YQD I+ IT +MG GMA +I E V +++DY+ YC
Sbjct: 120 RTVLVEFDKILNVYHRLKPQYQDIIKSITFKMGNGMADYILDEEFNVNGVATVEDYNLYC 179
Query: 170 YYVAGLVGLGLSKLFYAS--GTEDLAPDSLS--NSMGLFLQKTNIIRDYLEDINEIPKCR 225
+YVAGLVG GL+ LF + G + L ++ + +SMGLFLQKTNIIRDY ED+ + R
Sbjct: 180 HYVAGLVGEGLTNLFVLANFGDKTLTENNFAKADSMGLFLQKTNIIRDYHEDLQD---GR 236
Query: 226 MFWPREIWSKYVNKLEDLKYEENSDK---AVQCLNDMVTNALMHVEDCLKYMSALRDHAI 282
FWPREIWSKY L+D + K V C+N++V NAL HV DCL Y+S ++D +
Sbjct: 237 SFWPREIWSKYTENLQDFHKVKTPAKEFAGVSCINELVLNALGHVTDCLDYLSLVKDPSS 296
Query: 283 FRFCAIPQV 291
F FCAIPQV
Sbjct: 297 FSFCAIPQV 305
>SGD|S000001233 [details] [associations]
symbol:ERG9 "Farnesyl-diphosphate farnesyl transferase
(squalene synthase)" species:4932 "Saccharomyces cerevisiae"
[GO:0006629 "lipid metabolic process" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IEA] [GO:0006696 "ergosterol
biosynthetic process" evidence=IMP] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005789 "endoplasmic reticulum
membrane" evidence=IEA] [GO:0016765 "transferase activity,
transferring alkyl or aryl (other than methyl) groups"
evidence=IEA] [GO:0051996 "squalene synthase activity"
evidence=IEA;IDA] [GO:0016021 "integral to membrane"
evidence=IEA;IDA] [GO:0016126 "sterol biosynthetic process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IDA] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity"
evidence=IEA;IDA] [GO:0008610 "lipid biosynthetic process"
evidence=IEA] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA] [GO:0006694
"steroid biosynthetic process" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008299 "isoprenoid biosynthetic
process" evidence=IEA] [GO:0008202 "steroid metabolic process"
evidence=IEA] InterPro:IPR002060 InterPro:IPR006449
InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045
SGD:S000001233 GO:GO:0005783 GO:GO:0016021 GO:GO:0005741
GO:GO:0005789 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
EMBL:BK006934 GO:GO:0016491 EMBL:U00030 GO:GO:0006696 GO:GO:0008299
UniPathway:UPA00767 eggNOG:COG1562 HOGENOM:HOG000186940 KO:K00801
GO:GO:0004310 GO:GO:0051996 TIGRFAMs:TIGR01559 OMA:ELRHAVC
GeneTree:ENSGT00390000016034 OrthoDB:EOG4BP4MQ EMBL:M63979
EMBL:X59959 PIR:S46682 RefSeq:NP_012060.1 ProteinModelPortal:P29704
SMR:P29704 DIP:DIP-4576N IntAct:P29704 MINT:MINT-491875
STRING:P29704 PaxDb:P29704 PeptideAtlas:P29704 EnsemblFungi:YHR190W
GeneID:856597 KEGG:sce:YHR190W CYGD:YHR190w
BioCyc:MetaCyc:YHR190W-MONOMER NextBio:982487 ArrayExpress:P29704
Genevestigator:P29704 GermOnline:YHR190W Uniprot:P29704
Length = 444
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 131/305 (42%), Positives = 183/305 (60%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQAEK--QIPPEPHWAFCYSMLHKVSRSFALVIQQL 58
MG L + HP ++ LKLK P+ C+ +L+ SRSFA VI++L
Sbjct: 1 MGKLLQLALHPVEMKAALKLKFCRTPLFSIYDQSTSPYLLHCFELLNLTSRSFAAVIREL 60
Query: 59 GTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYK-- 116
+LRN V +FYL+LRALDT+EDD SI D+K+ +L FH + +W F + K
Sbjct: 61 HPELRNCVTLFYLILRALDTIEDDMSIEHDLKIDLLRHFHEKLLLTKWSFDGNAPDVKDR 120
Query: 117 -VLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYC 169
VL D F + F +L YQ+ I++IT++MG GMA +I E ++++ DYD YC
Sbjct: 121 AVLTD-FESILIEFHKLKPEYQEVIKEITEKMGNGMADYILDENYNLNGLQTVHDYDVYC 179
Query: 170 YYVAGLVGLGLSKLFYAS--GTEDL-APDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRM 226
+YVAGLVG GL++L + E L + + L SMGLFLQKTNIIRDY ED+ + R
Sbjct: 180 HYVAGLVGDGLTRLIVIAKFANESLYSNEQLYESMGLFLQKTNIIRDYNEDLVD---GRS 236
Query: 227 FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFC 286
FWP+EIWS+Y +L+D EN + C+N +V NAL HV D L Y++ + + + F+FC
Sbjct: 237 FWPKEIWSQYAPQLKDFMKPENEQLGLDCINHLVLNALSHVIDVLTYLAGIHEQSTFQFC 296
Query: 287 AIPQV 291
AIPQV
Sbjct: 297 AIPQV 301
>UNIPROTKB|B4DT56 [details] [associations]
symbol:FDFT1 "cDNA FLJ50660, highly similar to Squalene
synthetase (EC 2.5.1.21)" species:9606 "Homo sapiens" [GO:0008610
"lipid biosynthetic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0004310 "farnesyl-diphosphate
farnesyltransferase activity" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
[GO:0045338 "farnesyl diphosphate metabolic process" evidence=IEA]
InterPro:IPR002060 InterPro:IPR006449 InterPro:IPR019845
Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045 GO:GO:0016021
Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0008610
GO:GO:0045338 GO:GO:0004310 TIGRFAMs:TIGR01559 HOVERGEN:HBG002370
UniGene:Hs.593928 HGNC:HGNC:3629 ChiTaRS:FDFT1 EMBL:AC069185
EMBL:AK300059 EMBL:AK316534 IPI:IPI01012882 SMR:B4DT56
STRING:B4DT56 Ensembl:ENST00000525777 Ensembl:ENST00000528643
Uniprot:B4DT56
Length = 332
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 107/211 (50%), Positives = 144/211 (68%)
Query: 84 SIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDI 143
+I + KVP+L FH +Y +W F ++ + +++ F +S F L + YQ I DI
Sbjct: 2 TISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADI 61
Query: 144 TKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED--LAPDS-LSNS 200
+RMG GMA+F+ K V S ++D+YC+YVAGLVG+GLS+LF AS ED + D+ +NS
Sbjct: 62 CRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANS 121
Query: 201 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 260
MGLFLQKTNIIRDYLED R FWP+E+WS+YV KL D EN D AVQCLN+++
Sbjct: 122 MGLFLQKTNIIRDYLEDQQG---GREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELI 178
Query: 261 TNALMHVEDCLKYMSALRDHAIFRFCAIPQV 291
TNAL H+ D + Y+S LR+ ++F FCAIPQV
Sbjct: 179 TNALHHIPDVITYLSRLRNQSVFNFCAIPQV 209
>UNIPROTKB|B3KQ95 [details] [associations]
symbol:FDFT1 "Squalene synthase" species:9606 "Homo
sapiens" [GO:0008610 "lipid biosynthetic process" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0045338 "farnesyl diphosphate metabolic process"
evidence=IEA] InterPro:IPR002060 InterPro:IPR006449
InterPro:IPR019845 Pfam:PF00494 PROSITE:PS01044 PROSITE:PS01045
GO:GO:0016021 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
GO:GO:0008610 GO:GO:0045338 GO:GO:0004310 TIGRFAMs:TIGR01559
HOVERGEN:HBG002370 UniGene:Hs.593928 HGNC:HGNC:3629 ChiTaRS:FDFT1
EMBL:AC069185 EMBL:AK057726 IPI:IPI00909973 SMR:B3KQ95
STRING:B3KQ95 Ensembl:ENST00000538689 Uniprot:B3KQ95
Length = 306
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 101/182 (55%), Positives = 129/182 (70%)
Query: 113 KEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYV 172
K+ +VL D F +S F L + YQ I DI +RMG GMA+F+ K V S ++D+YC+YV
Sbjct: 6 KDRQVLED-FPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYV 64
Query: 173 AGLVGLGLSKLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWP 229
AGLVG+GLS+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED R FWP
Sbjct: 65 AGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQG---GREFWP 121
Query: 230 REIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIP 289
+E+WS+YV KL D EN D AVQCLN+++TNAL H+ D + Y+S LR+ ++F FCAIP
Sbjct: 122 QEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIP 181
Query: 290 QV 291
QV
Sbjct: 182 QV 183
>UNIPROTKB|E9PJG4 [details] [associations]
symbol:FDFT1 "Squalene synthase" species:9606 "Homo
sapiens" [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0004310 "farnesyl-diphosphate farnesyltransferase activity"
evidence=IEA] [GO:0045338 "farnesyl diphosphate metabolic process"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
InterPro:IPR002060 Pfam:PF00494 GO:GO:0005783 GO:GO:0009058
Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0045338
GO:GO:0004310 HGNC:HGNC:3629 ChiTaRS:FDFT1 EMBL:AC069185
IPI:IPI01015743 ProteinModelPortal:E9PJG4 SMR:E9PJG4
Ensembl:ENST00000530337 ArrayExpress:E9PJG4 Bgee:E9PJG4
Uniprot:E9PJG4
Length = 150
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 59/146 (40%), Positives = 88/146 (60%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y L++ ++ ++ K +P + CY L++ SRSFA VIQ L +
Sbjct: 7 LGHPEEFYNLVRFRIGGKR--KVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+RNAVCIFYLVLRALDT+EDD +I + KVP+L FH +Y +W F ++ + +++
Sbjct: 65 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRM 147
F +S F L + YQ I DI +RM
Sbjct: 125 FPTISLEFRNLAEKYQTVIADICRRM 150
>UNIPROTKB|E9PS69 [details] [associations]
symbol:FDFT1 "Squalene synthase" species:9606 "Homo
sapiens" [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] InterPro:IPR002060
Pfam:PF00494 GO:GO:0009058 Gene3D:1.10.600.10 InterPro:IPR008949
SUPFAM:SSF48576 GO:GO:0016740 HGNC:HGNC:3629 ChiTaRS:FDFT1
EMBL:AC069185 IPI:IPI00977667 ProteinModelPortal:E9PS69 SMR:E9PS69
Ensembl:ENST00000532266 ArrayExpress:E9PS69 Bgee:E9PS69
Uniprot:E9PS69
Length = 113
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 49/106 (46%), Positives = 70/106 (66%)
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+RNAVCIFYLVLRALDT+EDD +I + KVP+L FH +Y +W F ++ + +++
Sbjct: 1 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLED 60
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDE 167
F +S F L + YQ I DI +RMG GMA+F+ K V S ++D+
Sbjct: 61 FPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDK 106
>UNIPROTKB|Q60AN4 [details] [associations]
symbol:sqs "Squalene synthase" species:243233
"Methylococcus capsulatus str. Bath" [GO:0004310
"farnesyl-diphosphate farnesyltransferase activity" evidence=ISS]
[GO:0019745 "pentacyclic triterpenoid biosynthetic process"
evidence=ISS] InterPro:IPR002060 InterPro:IPR019845 Pfam:PF00494
PROSITE:PS01044 Gene3D:1.10.600.10 InterPro:IPR008949
SUPFAM:SSF48576 GO:GO:0019745 EMBL:AE017282
GenomeReviews:AE017282_GR KO:K00801 OMA:ELEEYCW GO:GO:0004310
RefSeq:YP_113313.1 ProteinModelPortal:Q60AN4 GeneID:3102259
KEGG:mca:MCA0813 PATRIC:22605424 HOGENOM:HOG000230420
ProtClustDB:CLSK644100 Uniprot:Q60AN4
Length = 362
Score = 163 (62.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 64/253 (25%), Positives = 115/253 (45%)
Query: 44 LHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYD 103
L VSR+FAL I +L L V YL+ R +DT+ED+ ++ + K F R V
Sbjct: 25 LDGVSRTFALTIPRLPEGLARPVSNGYLLCRIVDTIEDEVALTSTQKRRYCEHFARVVAG 84
Query: 104 REWHFSCGTKEYKVLMDQF----HHVSTAF---LELGKGY----QDAIEDITKRMGAGMA 152
+ + +L DQ + A + + G+ Q+A+ + M GMA
Sbjct: 85 TAPAAPLADELFPLLSDQTLAAERELIAAIPRVISITHGFAAPQQEALAECVATMSRGMA 144
Query: 153 KFICKEV----ESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKT 208
+F K++ E + +YCYYVAG+VG L++LF E A S + + +
Sbjct: 145 EFQDKDLRHGLEDLRQMGDYCYYVAGVVGEMLTRLFCHYSPEIAAHRSRLMELAVSFGQG 204
Query: 209 NIIRDYLEDINEIPKCRMFW-PREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHV 267
+ + L+D+ + + W P+E++++ L +L+ + V+ ++ A H+
Sbjct: 205 LQMTNILKDLWDDHARGVCWLPQEVFTECGFSLTELRPHHANPDFVRGFERLIGVAHAHL 264
Query: 268 EDCLKYMSALRDH 280
+ L+Y + H
Sbjct: 265 RNALEYTLLIPRH 277
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.139 0.432 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 294 294 0.00091 115 3 11 22 0.46 33
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 611 (65 KB)
Total size of DFA: 233 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.26u 0.15s 25.41t Elapsed: 00:00:02
Total cpu time: 25.26u 0.15s 25.41t Elapsed: 00:00:02
Start: Fri May 10 07:43:48 2013 End: Fri May 10 07:43:50 2013