Query 022601
Match_columns 294
No_of_seqs 115 out of 1235
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 08:07:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vj8_A Squalene synthase; farn 100.0 1.8E-57 6.2E-62 426.3 25.5 259 32-293 8-269 (343)
2 4hd1_A Squalene synthase HPNC; 100.0 2E-55 6.8E-60 405.1 21.9 232 27-280 5-237 (294)
3 3acx_A Dehydrosqualene synthas 100.0 4.3E-54 1.5E-58 395.9 21.7 237 33-292 10-253 (293)
4 3rmg_A Octaprenyl-diphosphate 96.8 0.062 2.1E-06 49.5 17.2 145 135-282 133-310 (334)
5 2q80_A Geranylgeranyl pyrophos 96.3 0.18 6.1E-06 45.7 16.0 142 138-282 114-284 (301)
6 1v4e_A Octoprenyl-diphosphate 96.2 0.089 3E-06 47.6 13.7 142 136-280 128-288 (299)
7 3tc1_A Octaprenyl pyrophosphat 96.1 0.16 5.6E-06 46.2 14.9 144 136-283 123-296 (315)
8 3lmd_A Geranylgeranyl pyrophos 95.9 0.098 3.3E-06 48.7 13.0 144 135-282 160-336 (360)
9 3apz_A Geranyl diphosphate syn 95.8 0.64 2.2E-05 42.8 17.7 142 136-280 154-324 (348)
10 1rtr_A Geranyltranstransferase 95.7 0.16 5.4E-06 46.0 13.1 122 145-280 148-275 (301)
11 4dhd_A Polyprenyl synthetase; 95.7 0.1 3.4E-06 48.5 11.9 141 137-281 134-322 (358)
12 3uca_A Geranyltranstransferase 95.7 0.23 7.8E-06 45.5 14.0 121 146-280 181-308 (324)
13 3mzv_A Decaprenyl diphosphate 95.6 0.29 1E-05 45.1 14.7 144 136-283 140-318 (341)
14 2ftz_A Geranyltranstransferase 95.6 0.37 1.3E-05 43.3 14.8 128 136-279 135-267 (284)
15 3nf2_A Putative polyprenyl syn 95.5 0.19 6.4E-06 46.6 13.0 138 138-279 146-324 (352)
16 3ipi_A Geranyltranstransferase 95.5 0.33 1.1E-05 43.8 14.3 130 136-282 128-268 (295)
17 3aqb_B Component B of hexapren 95.4 0.34 1.2E-05 44.2 14.2 144 136-282 131-309 (325)
18 3pko_A Geranylgeranyl pyrophos 95.4 0.28 9.5E-06 45.1 13.5 142 136-282 144-318 (334)
19 4f62_A Geranyltranstransferase 95.2 0.14 4.8E-06 46.8 11.0 121 146-280 152-279 (317)
20 3oyr_A Trans-isoprenyl diphosp 95.2 0.34 1.2E-05 44.7 13.7 144 136-282 152-329 (345)
21 1wmw_A Geranylgeranyl diphosph 95.2 0.51 1.7E-05 43.1 14.8 143 136-282 131-314 (330)
22 3m0g_A Farnesyl diphosphate sy 95.1 0.075 2.6E-06 48.1 8.7 122 146-281 148-274 (297)
23 3p8r_A Geranyltranstransferase 94.8 0.19 6.6E-06 45.5 10.7 121 146-280 159-286 (302)
24 2qis_A Farnesyl pyrophosphate 94.8 0.4 1.4E-05 44.7 13.1 143 136-282 177-358 (374)
25 3lom_A Geranyltranstransferase 94.6 0.59 2E-05 42.5 13.4 120 146-280 159-287 (313)
26 2ihi_A Pyrophosphate synthase; 94.6 0.97 3.3E-05 42.4 15.1 140 137-282 180-380 (395)
27 1yhl_A Farnesyl pyrophosphate 94.5 0.51 1.7E-05 43.7 13.0 144 136-283 152-345 (362)
28 3lsn_A Geranyltranstransferase 94.5 0.29 1E-05 44.3 11.1 120 147-280 154-280 (304)
29 2h8o_A Geranyltranstransferase 94.5 0.23 8E-06 45.6 10.5 121 145-279 192-318 (335)
30 2azj_A Geranylgeranyl pyrophos 94.5 2.5 8.6E-05 37.8 17.6 119 136-279 136-261 (289)
31 1uby_A FPS, farnesyl diphospha 94.5 0.41 1.4E-05 44.5 12.3 142 136-281 170-350 (367)
32 2e8v_A Geranylgeranyl pyrophos 94.5 0.53 1.8E-05 43.2 12.8 140 139-281 135-320 (340)
33 3ts7_A Geranyltranstransferase 94.4 0.2 6.9E-06 45.9 9.7 121 146-280 159-286 (324)
34 1wy0_A Geranylgeranyl pyrophos 94.2 0.5 1.7E-05 43.4 12.1 140 139-282 141-326 (342)
35 3pde_A Farnesyl-diphosphate sy 94.0 0.39 1.3E-05 43.6 10.8 120 146-279 156-281 (309)
36 3p8l_A Geranyltranstransferase 94.0 0.27 9.1E-06 44.6 9.7 120 146-279 157-282 (302)
37 2her_A Fragment, farnesyl pyro 94.0 1 3.6E-05 41.8 13.8 140 139-282 172-340 (368)
38 3lk5_A Geranylgeranyl pyrophos 93.3 0.8 2.7E-05 42.8 11.8 134 144-280 184-354 (380)
39 1rqj_A Geranyltranstransferase 93.2 0.24 8.2E-06 44.7 7.8 120 146-279 153-279 (299)
40 3dyh_A Farnesyl pyrophosphate 93.0 1.1 3.7E-05 42.0 12.4 141 137-281 181-371 (390)
41 3llw_A Geranyltranstransferase 89.2 3.5 0.00012 37.3 11.3 117 146-278 160-283 (311)
42 3kra_B Geranyl diphosphate syn 89.2 2.1 7.3E-05 38.0 9.7 106 146-292 150-264 (274)
43 3npk_A Geranyltranstransferase 89.1 4.4 0.00015 36.2 11.8 119 146-280 146-270 (291)
44 3mav_A Farnesyl pyrophosphate 86.0 22 0.00074 33.0 15.8 119 161-283 231-381 (395)
45 2q58_A Fragment, farnesyl pyro 85.5 13 0.00043 34.3 13.0 85 193-281 238-339 (368)
46 2j1p_A Geranylgeranyl pyrophos 84.5 6.6 0.00023 35.0 10.3 106 146-279 161-275 (293)
47 3kb9_A EPI-isozizaene synthase 80.1 36 0.0012 31.2 21.1 183 52-242 92-292 (382)
48 3v1v_A 2-MIB synthase, 2-methy 77.8 47 0.0016 31.2 17.0 184 52-242 161-370 (433)
49 1ps1_A Pentalenene synthase; a 58.2 97 0.0033 27.2 21.5 199 52-271 52-270 (337)
50 1di1_A Aristolochene synthase; 53.7 1.1E+02 0.0037 26.3 20.9 201 52-276 48-269 (300)
51 3bny_A Aristolochene synthase; 51.9 1.2E+02 0.0041 26.4 19.6 195 52-271 62-278 (320)
52 1n1b_A (+)-bornyl diphosphate 51.8 1.7E+02 0.0059 28.2 20.6 187 63-270 288-497 (549)
53 3qkc_B Geranyl diphosphate syn 51.7 27 0.00092 30.7 6.2 64 146-209 152-220 (273)
54 4fp4_A Polyprenyl synthetase; 44.7 46 0.0016 29.5 6.6 75 135-215 133-210 (285)
55 1yfb_A Transition state regula 43.2 9.7 0.00033 25.6 1.5 21 223-243 21-41 (59)
56 2l66_A SSO7C4, transcriptional 38.3 15 0.00052 23.7 1.8 21 223-243 11-31 (53)
57 2j5c_A 1,8-cineole synthase; t 31.2 3.7E+02 0.013 26.0 16.5 195 63-279 309-525 (569)
58 2qzc_A Transcriptional activat 29.5 83 0.0028 26.0 5.5 41 231-271 91-131 (214)
59 1udd_A Transcriptional regulat 24.4 1.1E+02 0.0039 25.3 5.5 35 231-265 89-123 (226)
60 1yx3_A Hypothetical protein DS 24.3 29 0.001 27.2 1.5 40 250-289 84-123 (132)
61 3n0f_A Isoprene synthase; terp 24.2 4.9E+02 0.017 25.1 20.3 186 63-268 291-497 (555)
62 2gm8_A TENA homolog/THI-4 thia 24.0 1.2E+02 0.004 25.2 5.5 35 231-265 96-130 (221)
63 3ibx_A TENA, HP1287, putative 21.7 1.1E+02 0.0036 25.5 4.7 36 230-265 91-126 (221)
64 4fn6_A Thiaminase-2, thiaminas 21.1 1.4E+02 0.0049 24.8 5.5 36 230-265 87-123 (229)
65 1z72_A Transcriptional regulat 20.6 1.5E+02 0.0052 24.4 5.5 35 231-265 101-135 (225)
No 1
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=1.8e-57 Score=426.35 Aligned_cols=259 Identities=53% Similarity=0.916 Sum_probs=238.6
Q ss_pred CCchhHHHHHHHHhhcCccHHHHHHhcChhhhHHHHHHHHHHhhhccccCCCCCChhhhHHHHHHHHHHHcccccccccC
Q 022601 32 PPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG 111 (294)
Q Consensus 32 ~~~~~~~~c~~~~r~~~~sfy~a~~llP~~~R~a~~alYAf~R~~DdI~D~~~~~~~~k~~~L~~w~~~l~~~~~~~~~g 111 (294)
++++++++|.++++++|+|||+++++||+++|++++++|+|||++|||+|+++.+++.|..+|+||++.+.+..|.+..+
T Consensus 8 ~l~~~~~~C~~~l~~~srsF~la~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~~ 87 (343)
T 3vj8_A 8 SLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMES 87 (343)
T ss_dssp CCCHHHHHHHHHHHHHHGGGHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCCC
T ss_pred cchHHHHHHHHHHHhcCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcCC
Confidence 58899999999999999999999999999999999999999999999999998888899999999999998754445534
Q ss_pred CCccHHHHhhHHHHHHHHHhcChhHHHHHHHHHHHhhhHHHhhhhhhcCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCC
Q 022601 112 TKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED 191 (294)
Q Consensus 112 ~~~~~~l~~al~~~~~~~~~~~~~~~~li~~~~~~m~~g~~~Dl~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~ 191 (294)
++...+++..++.++..|..++..++++|.+++..|.+||++|+.++|+|++||+.|||+|||+||+|+++|++..+..+
T Consensus 88 ~~~~~~ll~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~ 167 (343)
T 3vj8_A 88 KEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFED 167 (343)
T ss_dssp CSTTTHHHHTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSC
T ss_pred ChhhHHHHhcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCcc
Confidence 55666788888888889988998899999999999999999999989999999999999999999999999998643212
Q ss_pred C---ChhHHHHHHHHHHHHHHHHhchhhhhhcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHH
Q 022601 192 L---APDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVE 268 (294)
Q Consensus 192 ~---~~~~~A~~lG~AlQltniLRDi~~D~~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~ 268 (294)
+ ...+.|.++|.|+|+||||||+++|+. +||+|||.|+|.+||++.+||.++++++++++++++++++|+.||.
T Consensus 168 ~~~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~ 244 (343)
T 3vj8_A 168 PLVGEDTERANSMGLFLQKTNIIRDYLEDQQ---GGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIP 244 (343)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhHHHHh---CCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 2 356899999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCchhhhhhhhhhhhc
Q 022601 269 DCLKYMSALRDHAIFRFCAIPQVRC 293 (294)
Q Consensus 269 ~A~~~~~~lp~~~~~~~c~~p~~~~ 293 (294)
+|++++..||+++.+.||+||+.+|
T Consensus 245 ~a~~~~~~L~~~~~~~~~~ip~~lA 269 (343)
T 3vj8_A 245 DVITYLSRLRNQSVFNFCAIPQVMA 269 (343)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccchhhHHHHHHHHH
Confidence 9999999999999999999999886
No 2
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=2e-55 Score=405.05 Aligned_cols=232 Identities=18% Similarity=0.243 Sum_probs=213.4
Q ss_pred ccCCCCCchhHHHHHHHHhhcCccHHHHHHhcChhhhHHHHHHHHHHhhhccccCCCCCChhhhHHHHHHHHHHHccccc
Q 022601 27 AEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREW 106 (294)
Q Consensus 27 ~~~~~~~~~~~~~c~~~~r~~~~sfy~a~~llP~~~R~a~~alYAf~R~~DdI~D~~~~~~~~k~~~L~~w~~~l~~~~~ 106 (294)
...+.+++++|++|.++++++|+|||++++|||+++|+++++||+|||++|||+|+... .|..+|+||++.+..
T Consensus 5 ~~~p~~l~~~y~~C~~i~~~~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~---~~~~~L~~~~~~l~~--- 78 (294)
T 4hd1_A 5 GSVPVELRGDFEVCRRLTRSHYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFAG---DRMAALDAYEEELRR--- 78 (294)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCCS---CHHHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHHHHHHH---
Confidence 45666789999999999999999999999999999999999999999999999998754 356799999999987
Q ss_pred ccccCCCccHHHHhhHHHHHHHHHhcChhHHHHHHHHHHHhhhHHHhhh-hhhcCCHHHHHHHHHhhhhHHHHHHHHhhc
Q 022601 107 HFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFI-CKEVESIDDYDEYCYYVAGLVGLGLSKLFY 185 (294)
Q Consensus 107 ~~~~g~~~~~~l~~al~~~~~~~~~~~~~~~~li~~~~~~m~~g~~~Dl-~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~ 185 (294)
++. |++. +|++.+|..++++++++.+++.++|+ ||++|+ .++|+|++||+.|||+|||+||+|++.|+|
T Consensus 79 ~~~-g~~~-~pv~~al~~~~~~~~l~~~~~~~li~--------g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g 148 (294)
T 4hd1_A 79 AFA-GEAT-TPAFRALQFTIATCNLPMEPFLRLIE--------ANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFG 148 (294)
T ss_dssp HHH-TCCC-SHHHHHHHHHHHHHTCCSHHHHHHHH--------HHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred Hhc-CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhC
Confidence 455 7765 57888999999999988888888886 999999 478999999999999999999999999997
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHhchhhhhhcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH
Q 022601 186 ASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265 (294)
Q Consensus 186 ~~~~~~~~~~~~A~~lG~AlQltniLRDi~~D~~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~ 265 (294)
. .++...+.|.++|.|+|+||||||+++|+. +||||||.|+|++||++++++.+++.++++++++++++++|+.
T Consensus 149 ~---~~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~ 222 (294)
T 4hd1_A 149 C---LDDERARLSDATCTALQVANHMQDIDRDLA---LGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQA 222 (294)
T ss_dssp C---CSHHHHHHHHHHHHHHHHHHHHHTHHHHHH---TTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHHHhchhhhc---cCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 4 345577899999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCc
Q 022601 266 HVEDCLKYMSALRDH 280 (294)
Q Consensus 266 ~l~~A~~~~~~lp~~ 280 (294)
||++|+.++..+|+.
T Consensus 223 ~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 223 LFDEGRRLESLVPPR 237 (294)
T ss_dssp HHHHHGGGGGSSCHH
T ss_pred HHHHHHHHHHhCCHH
Confidence 999999999999974
No 3
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=4.3e-54 Score=395.93 Aligned_cols=237 Identities=19% Similarity=0.227 Sum_probs=212.3
Q ss_pred CchhHHHHHHHHhhcCccHHHHHHhcChhhhHHHHHHHHHHhhhccccCCCCCChhhhHHHHHHHHHHHcccccccccCC
Q 022601 33 PEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGT 112 (294)
Q Consensus 33 ~~~~~~~c~~~~r~~~~sfy~a~~llP~~~R~a~~alYAf~R~~DdI~D~~~~~~~~k~~~L~~w~~~l~~~~~~~~~g~ 112 (294)
+++++++|.++++++|+|||+++++||+++|++++++|+|||++|||+|+++++.+ |+||++.+.+ ++. |.
T Consensus 10 ~~~~~~~c~~~~~~~s~sF~~a~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~~~~~-----L~~w~~~l~~---~~~-g~ 80 (293)
T 3acx_A 10 MDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQF-----LNQIKEDIQS---IEK-YP 80 (293)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGGTSSTHH-----HHHHHHHHHH---HHH-CT
T ss_pred hHHHHHHHHHHHhccCCcHHHHHHhCCHHHHHHHHHHHHHHHHHhhHhccCCCHHH-----HHHHHHHHHH---HhC-CC
Confidence 46779999999999999999999999999999999999999999999999876643 9999999986 355 65
Q ss_pred C------ccHHHHhhHHHHHHHHHhcChhHHHHHHHHHHHhhhHHHhhhh-hhcCCHHHHHHHHHhhhhHHHHHHHHhhc
Q 022601 113 K------EYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFY 185 (294)
Q Consensus 113 ~------~~~~l~~al~~~~~~~~~~~~~~~~li~~~~~~m~~g~~~Dl~-~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~ 185 (294)
+ +.+|++.+|..+++.|+++.+++.++|+ ||++|+. .+|+|++||+.|||+|||+||+|+++++|
T Consensus 81 ~~~~~~~~~~pv~~al~~~~~~~~l~~~~~~~li~--------g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g 152 (293)
T 3acx_A 81 YEYHHFQSDRRIMMALQHVAQHKNIAFQSFYNLID--------TVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILS 152 (293)
T ss_dssp TSCCCCSSCHHHHHHHHHHHHHSCCCHHHHHHHHH--------HHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred CcccCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 4 6788999999999999877777777775 9999995 68999999999999999999999999998
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHhchhhhhhcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH
Q 022601 186 ASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265 (294)
Q Consensus 186 ~~~~~~~~~~~~A~~lG~AlQltniLRDi~~D~~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~ 265 (294)
.. +.++..+.|.++|.|+|+||||||+++|+. +||||||.|+|++||++.++|.++++++++++++++++++|+.
T Consensus 153 ~~--~~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~ 227 (293)
T 3acx_A 153 DH--ETHQTYDVARRLGESLQLINILRDVGEDFE---NERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEK 227 (293)
T ss_dssp SS--CCHHHHHHHHHHHHHHHHHHHHHCHHHHHH---TTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 52 114567899999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCchhhhhhhhhhhh
Q 022601 266 HVEDCLKYMSALRDHAIFRFCAIPQVR 292 (294)
Q Consensus 266 ~l~~A~~~~~~lp~~~~~~~c~~p~~~ 292 (294)
||.+|+++++.+|++ .+.+|.++..+
T Consensus 228 ~~~~a~~~~~~lp~~-~r~~~~~~~~~ 253 (293)
T 3acx_A 228 DFRDVMDQIKVFSIE-AQPIIELAARI 253 (293)
T ss_dssp HHHHHHHTGGGSCTT-HHHHHHHHHHH
T ss_pred HHHHHHHhHHhCCHH-HHHHHHHHHHH
Confidence 999999999999984 44456655543
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=96.84 E-value=0.062 Score=49.47 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHH
Q 022601 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (294)
Q Consensus 135 ~~~~li~~~~~~m~~g~~~Dl~~---~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQl 207 (294)
...+++.+.+..|..|...|+.. .-.|.+++..-+++-.|++..+++.+... .|.+. .....++.++|.|+|+
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 212 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQI 212 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666788898889842 34688888887888888777777655332 22221 1245789999999999
Q ss_pred HHHHhch----------hhhhhcCCCCCccccHHHHHhcCCCh--hhhh----cccCCH-HHH---H------HHHHHHH
Q 022601 208 TNIIRDY----------LEDINEIPKCRMFWPREIWSKYVNKL--EDLK----YEENSD-KAV---Q------CLNDMVT 261 (294)
Q Consensus 208 tniLRDi----------~~D~~~~~~gR~YLP~d~l~~~gv~~--edl~----~~~~~~-~~~---~------~i~~~~~ 261 (294)
.+=+-|+ +.|+. .|.+=+|.=..-+..-.. +.|. .+..++ .+. + .+.....
T Consensus 213 ~DD~ld~~~~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~ 289 (334)
T 3rmg_A 213 KDDIFDYFDSKKIGKPTGNDML---EGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACR 289 (334)
T ss_dssp HHHHHTTSCC------CCHHHH---TTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHhccCCChhhcCCCchhhhh---cCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHH
Confidence 9888886 47888 799988865543332211 1121 122222 222 2 2444567
Q ss_pred HHHHHHHHHHHHHhhCCCchh
Q 022601 262 NALMHVEDCLKYMSALRDHAI 282 (294)
Q Consensus 262 ~A~~~l~~A~~~~~~lp~~~~ 282 (294)
.++.+.++|.+.+..+|+.+.
T Consensus 290 ~~~~~~~~A~~~L~~lp~~~~ 310 (334)
T 3rmg_A 290 TIEQYKKKAFDLLAALPDSNI 310 (334)
T ss_dssp HHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHHHHHhCCCcHH
Confidence 788999999999999997654
No 5
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=96.25 E-value=0.18 Score=45.67 Aligned_cols=142 Identities=11% Similarity=0.018 Sum_probs=93.7
Q ss_pred HHHHHHHHHhhhHHHhhhhh--h--cCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCCCChhHHHHHHHHHHHHHHHHhc
Q 022601 138 DAIEDITKRMGAGMAKFICK--E--VESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213 (294)
Q Consensus 138 ~li~~~~~~m~~g~~~Dl~~--~--~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~~~~~~~A~~lG~AlQltniLRD 213 (294)
+++.+.+..|..|...|+.. . ..|++++..-+++-.|++..+.+.+....+..++....++.++|.|+|+.+=+-|
T Consensus 114 ~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~~l~~~g~~lG~aFQi~DD~ld 193 (301)
T 2q80_A 114 KLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYAN 193 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444556777898889842 2 5688888888888888777777766443211234567899999999999987777
Q ss_pred h-----------hhhhhcCCCCCccccHHHHHhcCCChhhh---h-cccCCHHHHH----H------HHHHHHHHHHHHH
Q 022601 214 Y-----------LEDINEIPKCRMFWPREIWSKYVNKLEDL---K-YEENSDKAVQ----C------LNDMVTNALMHVE 268 (294)
Q Consensus 214 i-----------~~D~~~~~~gR~YLP~d~l~~~gv~~edl---~-~~~~~~~~~~----~------i~~~~~~A~~~l~ 268 (294)
+ +.|+. .|.+-+|.=..-+.+-....+ . .+..++.+.. + +...-+.++.+.+
T Consensus 194 ~~~~~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~ 270 (301)
T 2q80_A 194 LHSKEYSENKSFCEDLT---EGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEA 270 (301)
T ss_dssp HHCC------CTTHHHH---HTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hcCChhhhCCCccchhh---cCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 5 47787 689988875443332111112 1 2222344333 2 2355577889999
Q ss_pred HHHHHHhhCCCchh
Q 022601 269 DCLKYMSALRDHAI 282 (294)
Q Consensus 269 ~A~~~~~~lp~~~~ 282 (294)
+|.+.+..+|..+.
T Consensus 271 ~A~~~L~~l~~~~~ 284 (301)
T 2q80_A 271 KAYKQIDARGGNPE 284 (301)
T ss_dssp HHHHHHHHTTCCHH
T ss_pred HHHHHHHcCCCCHH
Confidence 99999999997653
No 6
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=96.19 E-value=0.089 Score=47.64 Aligned_cols=142 Identities=13% Similarity=0.046 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhhHHHhhhhh--hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCCChhHHHHHHHHHHHHHHHHh
Q 022601 136 YQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIR 212 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~--~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~~~~~~~A~~lG~AlQltniLR 212 (294)
..+.+.+....|..|...|+.. ...|++++..-++.-.|++..+.+.+-.. +|.+......++.++|.|+|+.+=+-
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQi~DD~l 207 (299)
T 1v4e_A 128 LRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIM 207 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566788898889842 23788888887888778777766655332 23222345689999999999998777
Q ss_pred ch----------hhhhhcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHH------HHHHHHHHHHHHHHHHHHhh
Q 022601 213 DY----------LEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCL------NDMVTNALMHVEDCLKYMSA 276 (294)
Q Consensus 213 Di----------~~D~~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i------~~~~~~A~~~l~~A~~~~~~ 276 (294)
|+ +.|+. .|.+-+|.=..-+..-....+.....-..+.+++ ......++.+.++|.+.+..
T Consensus 208 D~~~d~~~GK~~g~Dl~---egK~T~p~l~al~~~~~l~~~l~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~ 284 (299)
T 1v4e_A 208 DFAGMEKIGKDGFLDLK---NGVASFPLVTAMEKFPEARQMFENRDWSGLMSFMREKGILKECEETLKVLVKNVIIENSW 284 (299)
T ss_dssp HHTTCCSCCTTSSCCCT---TTTCCHHHHHHHHHCHHHHHHHHTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HccCccccCCCcchHhh---CCCchHHHHHHHHhChHHHHHHhHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 75 45677 7888888643222110011222222223333333 45556778888899998888
Q ss_pred CCCc
Q 022601 277 LRDH 280 (294)
Q Consensus 277 lp~~ 280 (294)
+|..
T Consensus 285 l~~~ 288 (299)
T 1v4e_A 285 LRDF 288 (299)
T ss_dssp GCCC
T ss_pred hhhh
Confidence 8864
No 7
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=96.08 E-value=0.16 Score=46.24 Aligned_cols=144 Identities=9% Similarity=0.023 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCCChhHHHHHHHHHHHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNII 211 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~---~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~~~~~~~A~~lG~AlQltniL 211 (294)
..+.+.+.+..|..|...|+.. .-.|.+++..-+++-.|++..+.+.+... +|........++.++|.|+|+.+=+
T Consensus 123 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~ 202 (315)
T 3tc1_A 123 IAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAKIYADFGLNFGMAFQIIDDL 202 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556777888888842 25688887777777777777766655432 2322223568899999999999988
Q ss_pred hch-----------hhhhhcCCCCCccccHHHHHhcCCChh---hh---hcccCCHHHHH---------HHHHHHHHHHH
Q 022601 212 RDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE---DL---KYEENSDKAVQ---------CLNDMVTNALM 265 (294)
Q Consensus 212 RDi-----------~~D~~~~~~gR~YLP~d~l~~~gv~~e---dl---~~~~~~~~~~~---------~i~~~~~~A~~ 265 (294)
-|+ +.|+. .|.+-+|.=..-+. .+++ .| ......+.+.. .+......++.
T Consensus 203 ld~~~d~~~~GK~~g~Dl~---egK~T~p~i~al~~-~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~ 278 (315)
T 3tc1_A 203 LDITQDAKTLGKPNFSDFK---EGKTTLPYLLLYEK-LNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQV 278 (315)
T ss_dssp HTTSCCTTCCCCCCCCTGG---GTCCCHHHHHHHTT-SCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hcccCCHHHhCCChhhHHH---cCChhHHHHHHHHh-CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 886 56887 79998886544333 2222 12 22222222222 23445567889
Q ss_pred HHHHHHHHHhhCCCchhh
Q 022601 266 HVEDCLKYMSALRDHAIF 283 (294)
Q Consensus 266 ~l~~A~~~~~~lp~~~~~ 283 (294)
+..+|.+.+..+|+.+.+
T Consensus 279 ~~~~A~~~L~~lp~s~~r 296 (315)
T 3tc1_A 279 YSKKALEAIKGENNLILE 296 (315)
T ss_dssp HHHHHHHHTTTTCCHHHH
T ss_pred HHHHHHHHHHhCCCcHHH
Confidence 999999999999987654
No 8
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=95.95 E-value=0.098 Score=48.66 Aligned_cols=144 Identities=12% Similarity=0.083 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHhhhHHHhhhhh--hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 022601 135 GYQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 208 (294)
Q Consensus 135 ~~~~li~~~~~~m~~g~~~Dl~~--~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQlt 208 (294)
...+.+.+.+..|..|...|+.. ...|++++..-++.-.|++..+.+.+-.. .|.+. .....++.++|.|+|+.
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~ 239 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIV 239 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566788898889842 23677777766777777777766655332 23221 12457889999999999
Q ss_pred HHHhch-----------hhhhhcCCCCCccccHHHHHhcCCCh--hhh---hc-ccCCH-HHHH---------HHHHHHH
Q 022601 209 NIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKL--EDL---KY-EENSD-KAVQ---------CLNDMVT 261 (294)
Q Consensus 209 niLRDi-----------~~D~~~~~~gR~YLP~d~l~~~gv~~--edl---~~-~~~~~-~~~~---------~i~~~~~ 261 (294)
|=+-|+ +.|+. .|.+-+|.=..-+.+ ++ +.| .. +..++ .+.. .+..--.
T Consensus 240 DDilD~~~d~~~~GK~~g~Dl~---egK~Tlp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~ 315 (360)
T 3lmd_A 240 DDIIDIFSETHESGKTPGTDLR---EGVFTLPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALD 315 (360)
T ss_dssp HHHHHHHC--------CCHHHH---HTCCCHHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHccCChhhhCCCchhHHh---cCCchHHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHH
Confidence 877776 46787 789988876544432 11 112 11 21222 2222 2455667
Q ss_pred HHHHHHHHHHHHHhhCCCchh
Q 022601 262 NALMHVEDCLKYMSALRDHAI 282 (294)
Q Consensus 262 ~A~~~l~~A~~~~~~lp~~~~ 282 (294)
.++.+.++|.+.+..+|..+.
T Consensus 316 ~a~~~~~~A~~~L~~lp~~~~ 336 (360)
T 3lmd_A 316 EVYRYMDIANAELDRLPDSTV 336 (360)
T ss_dssp HHHHHHHHHHHHHTTSCCSHH
T ss_pred HHHHHHHHHHHHHHhCCCcHH
Confidence 789999999999999998654
No 9
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=95.76 E-value=0.64 Score=42.75 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCC---ChhHHHHHHHHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKT 208 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~---~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~~---~~~~~A~~lG~AlQlt 208 (294)
..+.+.+....|..|...|+.. .-.|++++..-++.-.|++..+.+.+... .|.+.. ....++.++|.|+|+.
T Consensus 154 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~ 233 (348)
T 3apz_A 154 VVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLI 233 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566788898888842 24677777766677777776666655332 232211 2357889999999999
Q ss_pred HHHhchh-----------hhhhcCCCCCccccHHHHHhcCCChhhhhccc--CCHHHH---H------HHHHHHHHHHHH
Q 022601 209 NIIRDYL-----------EDINEIPKCRMFWPREIWSKYVNKLEDLKYEE--NSDKAV---Q------CLNDMVTNALMH 266 (294)
Q Consensus 209 niLRDi~-----------~D~~~~~~gR~YLP~d~l~~~gv~~edl~~~~--~~~~~~---~------~i~~~~~~A~~~ 266 (294)
+=+-|+- .|+. .|.+=+|.=..-+..-....+.... ..+.+. + .+......++.+
T Consensus 234 DD~lD~~gd~~~~GK~~g~Dl~---egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~ 310 (348)
T 3apz_A 234 DDILDFTGTSASLGKGSLSDIR---HGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEH 310 (348)
T ss_dssp HHHHHHHTTTTCTTCSCCHHHH---TTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHhhccCChhhcCCcchhhHh---CCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 8777763 6777 7899888754333221122222111 122222 2 244555778899
Q ss_pred HHHHHHHHhhCCCc
Q 022601 267 VEDCLKYMSALRDH 280 (294)
Q Consensus 267 l~~A~~~~~~lp~~ 280 (294)
.++|.+.+..+|..
T Consensus 311 ~~~A~~~L~~l~~~ 324 (348)
T 3apz_A 311 ANLAAAAIGSLPET 324 (348)
T ss_dssp HHHHHHHHTTSCCC
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999875
No 10
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=95.71 E-value=0.16 Score=46.01 Aligned_cols=122 Identities=11% Similarity=0.063 Sum_probs=80.5
Q ss_pred HHhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchhhhh
Q 022601 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (294)
Q Consensus 145 ~~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltniLRDi~~D~ 218 (294)
..|..|...|+. ....|++++..-++.-.|++....+.+-.. +|.+. .....++.++|.|+|+.+=+-|+-.|.
T Consensus 148 ~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 227 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 456778888884 236788888888888888877776665332 23222 124578999999999999888886655
Q ss_pred hcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 022601 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (294)
Q Consensus 219 ~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~ 280 (294)
.. .|+ | . -+|+.+|+.+-.+.-.+..--+.++++.++|.+.+..+|+.
T Consensus 228 ~~--~GK---~------~---g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 275 (301)
T 1rtr_A 228 AK--LGK---K------V---GSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQ 275 (301)
T ss_dssp CC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HH--hCC---C------c---chHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 31 232 1 0 14555666665566667777889999999999999999854
No 11
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=95.68 E-value=0.1 Score=48.54 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhhhHHHhhhhhh---------------cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHH
Q 022601 137 QDAIEDITKRMGAGMAKFICKE---------------VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSL 197 (294)
Q Consensus 137 ~~li~~~~~~m~~g~~~Dl~~~---------------~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~ 197 (294)
.+.+.+.+..|..|...|+... -.|.+++..-+++-.|++..+.+.+... .|.+. .....+
T Consensus 134 ~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~ 213 (358)
T 4dhd_A 134 AKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNF 213 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444455567788988888422 4588888877788888877776655432 23221 124578
Q ss_pred HHHHHHHHHHHHHHhch-----------hhhhhcCCCCCc-cccHHHHHhcCCChh---hhh----cccCC-HHHH---H
Q 022601 198 SNSMGLFLQKTNIIRDY-----------LEDINEIPKCRM-FWPREIWSKYVNKLE---DLK----YEENS-DKAV---Q 254 (294)
Q Consensus 198 A~~lG~AlQltniLRDi-----------~~D~~~~~~gR~-YLP~d~l~~~gv~~e---dl~----~~~~~-~~~~---~ 254 (294)
+.++|.|+|+.|=+-|+ +.|+. .|.+ -+|.=..-+.. +.+ .|. ++..+ +.+. +
T Consensus 214 g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~---egK~~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~~~i~~ 289 (358)
T 4dhd_A 214 GMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIK---EHKRGNAVVAVALSHL-GEGERRRLLEILAREVVEEADVREAVA 289 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------CTTHHHH---TTBSCSHHHHHHHHHS-CHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCCchhhHh---cCChhhHHHHHHHHhC-ChhhHHHHHHHHcCCCCCHHHHHHHHH
Confidence 89999999999877775 57888 7999 88865433322 221 111 12212 2222 2
Q ss_pred H------HHHHHHHHHHHHHHHHHHHhhCCCch
Q 022601 255 C------LNDMVTNALMHVEDCLKYMSALRDHA 281 (294)
Q Consensus 255 ~------i~~~~~~A~~~l~~A~~~~~~lp~~~ 281 (294)
+ +......++.+.++|.+.+..+|+.+
T Consensus 290 li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~~ 322 (358)
T 4dhd_A 290 LLDSVGAREEALRLAARYREEAERHLAKIPNNG 322 (358)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 2 23346788999999999999999765
No 12
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=95.66 E-value=0.23 Score=45.50 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=75.1
Q ss_pred HhhhHHHhhhhh--h-cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchhhhh
Q 022601 146 RMGAGMAKFICK--E-VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (294)
Q Consensus 146 ~m~~g~~~Dl~~--~-~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltniLRDi~~D~ 218 (294)
.|..|...|+.. . -.|.+++..-.+.-.|++..+.+.+-.. .|... .....++.++|.|+|+.|=+.|+--|.
T Consensus 181 ~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 260 (324)
T 3uca_A 181 GMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNA 260 (324)
T ss_dssp THHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 467788888842 2 5688888877777777777766655332 22221 124578999999999999888874433
Q ss_pred hcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 022601 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (294)
Q Consensus 219 ~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~ 280 (294)
.. .|.- . -+|+.+|+.+=.+.-.+..--+.++++.++|.+.+..+|..
T Consensus 261 ~~--~GK~---------~---g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 308 (324)
T 3uca_A 261 KD--LGKN---------V---HKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGN 308 (324)
T ss_dssp ------------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HH--hCCC---------c---chHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 21 1210 1 13444555555555556777888999999999999999875
No 13
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=95.63 E-value=0.29 Score=45.06 Aligned_cols=144 Identities=12% Similarity=0.098 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 208 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~---~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQlt 208 (294)
..+.+.+....|..|...|+.. .-.|.+++..-+++-.|++..+.+.+... .|.+. .....++.++|.|+|+.
T Consensus 140 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~ 219 (341)
T 3mzv_A 140 VMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIV 219 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556778898888842 35788888877788788777776665432 22221 12457889999999999
Q ss_pred HHHhch-----------hhhhhcCCCCCccccHHHHHhcCCChhh------hhc-cc-CCHHHHHH---------HHHHH
Q 022601 209 NIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLED------LKY-EE-NSDKAVQC---------LNDMV 260 (294)
Q Consensus 209 niLRDi-----------~~D~~~~~~gR~YLP~d~l~~~gv~~ed------l~~-~~-~~~~~~~~---------i~~~~ 260 (294)
|=+-|+ +.|+. .|.+=+|.=..-+.. +.++ +.. +. ..+.+..+ +....
T Consensus 220 DD~ld~~~d~~~~GK~~g~Dl~---egK~Tlp~i~al~~~-~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~ 295 (341)
T 3mzv_A 220 DDLLDYGGKSAEIGKNTGDDFR---ERKLTMPVIKAVALA-DEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATR 295 (341)
T ss_dssp HHHHHC----------CCHHHH---TTCCCHHHHHHHHTC-CHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHhccCChhhcCCCCCcccc---cCchhHHHHHHHHhC-CHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHH
Confidence 877776 56888 799988865443332 2211 111 11 22333333 45556
Q ss_pred HHHHHHHHHHHHHHhhCCCchhh
Q 022601 261 TNALMHVEDCLKYMSALRDHAIF 283 (294)
Q Consensus 261 ~~A~~~l~~A~~~~~~lp~~~~~ 283 (294)
..++.+.++|.+.+..+|..+.+
T Consensus 296 ~~a~~~~~~A~~~L~~lp~~~~~ 318 (341)
T 3mzv_A 296 LAAIGWTDTARKALAKLPDHPLR 318 (341)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHH
Confidence 77899999999999999986543
No 14
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=95.56 E-value=0.37 Score=43.26 Aligned_cols=128 Identities=11% Similarity=0.016 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhhhHHHhhhh--hh--cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCCChhHHHHHHHHHHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFIC--KE--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNI 210 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~--~~--~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~~~~~~~A~~lG~AlQltni 210 (294)
+.+.+.+....|..|...|+. .. ..|++++..-++.-.|++..+.+.+-.. +|.+.+....++.++|.|+|+.|=
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD 214 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYDD 214 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Confidence 334444455677889888884 23 5789999888888888887777665432 232222456889999999999999
Q ss_pred HhchhhhhhcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022601 211 IRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (294)
Q Consensus 211 LRDi~~D~~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~ 279 (294)
+.|+-.|... .|.-. | +|+. +.+-.+.-.+..--+.++++.++|.+.+..+|.
T Consensus 215 ~lD~~~d~~~--~GK~~---------g---~Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 267 (284)
T 2ftz_A 215 LXDILGSFEK--VGKDL---------G---KDTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGL 267 (284)
T ss_dssp HHHHHHHCCC--C-------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcCCHHh--hCCCc---------c---hhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9998777642 34310 1 1222 223333334566678889999999999999985
No 15
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=95.51 E-value=0.19 Score=46.56 Aligned_cols=138 Identities=13% Similarity=0.049 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHH
Q 022601 138 DAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNI 210 (294)
Q Consensus 138 ~li~~~~~~m~~g~~~Dl~~---~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltni 210 (294)
+++.+.+..|..|...|+.. .-.|.+++..-+++-.|++..+.+.+-.. .|.+. .....++.++|.|+|+.+=
T Consensus 146 ~~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD 225 (352)
T 3nf2_A 146 RRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDD 225 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677788888842 35688888877777788877776665432 23221 1245789999999999987
Q ss_pred Hhch-----------hhhhhcCCCCCccccHHHHHhcCCCh--hhh---hcc--------cCC-HHH---HHH------H
Q 022601 211 IRDY-----------LEDINEIPKCRMFWPREIWSKYVNKL--EDL---KYE--------ENS-DKA---VQC------L 256 (294)
Q Consensus 211 LRDi-----------~~D~~~~~~gR~YLP~d~l~~~gv~~--edl---~~~--------~~~-~~~---~~~------i 256 (294)
+-|+ +.|+. .|.+-+|.=..-+.+ ++ ..| ... ..+ +.+ .++ +
T Consensus 226 ~ld~~gd~~~~GK~~g~Dl~---egK~Tlpvi~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~ 301 (352)
T 3nf2_A 226 LLGIWGDPDATGKQTWSDLR---QRKKSLPVVAALAAG-GAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGR 301 (352)
T ss_dssp HHHHHCCHHHHSSCTTHHHH---TTCCCHHHHHHHHHC-SHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHH
T ss_pred HHhccCChhhhCCCcCcccc---cCCccHHHHHHHHhC-ChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcH
Confidence 7775 57888 799988865444332 22 122 211 112 222 222 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC
Q 022601 257 NDMVTNALMHVEDCLKYMSALRD 279 (294)
Q Consensus 257 ~~~~~~A~~~l~~A~~~~~~lp~ 279 (294)
..-.+.++.+.++|.+.+..+|.
T Consensus 302 ~~a~~~a~~~~~~A~~~L~~lp~ 324 (352)
T 3nf2_A 302 EWTADEARRQHTIAIEALDAVDM 324 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 45567788999999999999997
No 16
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=95.48 E-value=0.33 Score=43.79 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTN 209 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltn 209 (294)
..+.+.+....|..|...|+. ....|.+++..-.+.-.|++..+.+.+-.. .|.+. .....++.++|.|+|+.|
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~D 207 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVD 207 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455567788888884 234566777766777777777766655332 23221 124578999999999998
Q ss_pred HHhchh-----hhhhcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchh
Q 022601 210 IIRDYL-----EDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAI 282 (294)
Q Consensus 210 iLRDi~-----~D~~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~~~ 282 (294)
=+-|+- .|.. .|.+-+|.=...+.+ + ...+..-.+.++.+.++|.+.+..+|+.+.
T Consensus 208 DilD~~~~~~gkd~~---~gk~Tlp~l~al~~~------------~--~~~le~a~~~a~~~~~~A~~~L~~lp~~~~ 268 (295)
T 3ipi_A 208 DILEFLEVVEGKESK---FTSETLPHIYMKSTS------------K--EEALKKSIDCVKLHVAAAKETLETFRECPA 268 (295)
T ss_dssp HHHHHHHHHHC----------CCHHHHHTTTSC------------H--HHHHHHHHHHHHHHHHHHHHHHTTSCCSHH
T ss_pred HHHHhcCCccCCCcc---cCcccHHHHHHHhcC------------c--hhHHHHHHHHHHHHHHHHHHHHHhCCCchH
Confidence 888874 4555 577767743221111 1 134777778899999999999999997543
No 17
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=95.40 E-value=0.34 Score=44.22 Aligned_cols=144 Identities=12% Similarity=0.052 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 208 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~---~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQlt 208 (294)
..+.+.+....|..|...|+.. .-.|++++..-++.-.|++..+.+.+-.. +|.+. .....++.++|.|+|+.
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~ 210 (325)
T 3aqb_B 131 FHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQII 210 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556778898889842 25688888888888888887777766443 23221 12457899999999999
Q ss_pred HHHhch-----------hhhhhcCCCCCccccHHHHHhcC-C-Chh------hhhc-ccCCHHHH---HHH-----HHHH
Q 022601 209 NIIRDY-----------LEDINEIPKCRMFWPREIWSKYV-N-KLE------DLKY-EENSDKAV---QCL-----NDMV 260 (294)
Q Consensus 209 niLRDi-----------~~D~~~~~~gR~YLP~d~l~~~g-v-~~e------dl~~-~~~~~~~~---~~i-----~~~~ 260 (294)
|=+-|+ +.|+. .|.+=+|.=..-+.. - ..+ .+.. +...+.+. +++ ....
T Consensus 211 DD~ld~~~~~~~~GK~~g~Dl~---~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 287 (325)
T 3aqb_B 211 DDILDYTSDEATLGKPVGSDIR---NGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAE 287 (325)
T ss_dssp HHHHHHHSCHHHHSSCTTHHHH---TTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHhccCChhhcCCccchHhh---CCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 877775 57888 799988864332211 0 001 1111 11112222 222 2335
Q ss_pred HHHHHHHHHHHHHHhhCCCchh
Q 022601 261 TNALMHVEDCLKYMSALRDHAI 282 (294)
Q Consensus 261 ~~A~~~l~~A~~~~~~lp~~~~ 282 (294)
..++.+.++|.+.+..+|..+.
T Consensus 288 ~~~~~~~~~A~~~L~~lp~~~~ 309 (325)
T 3aqb_B 288 LLSRKYGDKAKYHLSQLQDSNI 309 (325)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHH
Confidence 6788999999999999998754
No 18
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=95.35 E-value=0.28 Score=45.06 Aligned_cols=142 Identities=14% Similarity=0.003 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 208 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~---~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQlt 208 (294)
..+.+.+.+..|..|...|+.. .-.|.++...-++.-.|++..+.+.+-.. +|.+. .....++.++|.|+|+.
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~ 223 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQML 223 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566777788888742 35677776666667777776666655432 23221 12457888999999999
Q ss_pred HHHhch-----------hhhhhcCCCCCccccHHHHHhcCCChhhh---h--cccCCH-H---HHHHH------HHHHHH
Q 022601 209 NIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLEDL---K--YEENSD-K---AVQCL------NDMVTN 262 (294)
Q Consensus 209 niLRDi-----------~~D~~~~~~gR~YLP~d~l~~~gv~~edl---~--~~~~~~-~---~~~~i------~~~~~~ 262 (294)
+=+-|+ +.|+. .|.+=+|.=..-+.. .+++ . ++..++ . +++++ ......
T Consensus 224 DD~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~i~al~~~--~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~ 298 (334)
T 3pko_A 224 DDILDYAGDPKRTQKPVLEDLR---SGVYSLPLLLSLSHA--PRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQL 298 (334)
T ss_dssp HHHHHHCSCTTSCCHHHHHHHH---TTCCCHHHHHHGGGS--HHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHhccCChhhcCCCCCCccc---cCchhHHHHHHHHhC--cHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHH
Confidence 877765 57888 799988865433321 1111 1 122222 2 22222 345567
Q ss_pred HHHHHHHHHHHHhhCCCchh
Q 022601 263 ALMHVEDCLKYMSALRDHAI 282 (294)
Q Consensus 263 A~~~l~~A~~~~~~lp~~~~ 282 (294)
++.+.++|.+.+..+|..+.
T Consensus 299 ~~~~~~~A~~~L~~lp~~~~ 318 (334)
T 3pko_A 299 AQDYTDRALTLIQQLPVGSA 318 (334)
T ss_dssp HHHHHHHHHHHHTTSCSSHH
T ss_pred HHHHHHHHHHHHHhCCCcHH
Confidence 89999999999999998644
No 19
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=95.23 E-value=0.14 Score=46.79 Aligned_cols=121 Identities=14% Similarity=0.136 Sum_probs=77.2
Q ss_pred HhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cC-CCC---CChhHHHHHHHHHHHHHHHHhchhhhh
Q 022601 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (294)
Q Consensus 146 ~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~-~~~---~~~~~~A~~lG~AlQltniLRDi~~D~ 218 (294)
.|..|...|+. ....|.+++..-.+.-.|++..+.+.+-.. +| .+. .....++.++|.|+|+.+=+-|+--|.
T Consensus 152 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 231 (317)
T 4f62_A 152 GMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDT 231 (317)
T ss_dssp THHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 36678888884 245788888887777777777776655432 23 121 124578899999999999888885443
Q ss_pred hcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 022601 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (294)
Q Consensus 219 ~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~ 280 (294)
.. .|. | . -+|+.+|+.+=.+.-.+..--+.++++.++|.+.+..+|..
T Consensus 232 ~~--~GK---~------~---g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 279 (317)
T 4f62_A 232 ET--LGK---T------Q---FSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGDK 279 (317)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred Hh--hCC---C------c---chHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 31 222 1 0 13455555555555567788889999999999999999864
No 20
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=95.22 E-value=0.34 Score=44.72 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 208 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~---~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQlt 208 (294)
..+++.+....|..|...|+.. .-.|.+++..-++.-.|++..+.+.+-.. .|.+. .....++.++|.|+|+.
T Consensus 152 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~ 231 (345)
T 3oyr_A 152 ALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLA 231 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566788898888842 35788888887888888887777665432 23221 12457899999999999
Q ss_pred HHHhch-----------hhhhhcCCCCCccccHHHHHhcCCChh-h-h---h-cc----cCCHHHHHH------HHHHHH
Q 022601 209 NIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE-D-L---K-YE----ENSDKAVQC------LNDMVT 261 (294)
Q Consensus 209 niLRDi-----------~~D~~~~~~gR~YLP~d~l~~~gv~~e-d-l---~-~~----~~~~~~~~~------i~~~~~ 261 (294)
+=+-|+ +.|+. .|.+=+|.=..-+.+-+.+ + + . .+ ..-..+.++ +..-..
T Consensus 232 DD~lD~~~d~~~~GK~~g~Dl~---egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~ 308 (345)
T 3oyr_A 232 DDALDYGGATETLGKNAGDDFR---EGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLD 308 (345)
T ss_dssp HHHTTC----------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHhccCChhhcCCCccchhh---cCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHH
Confidence 888776 46787 7889888755444332211 1 1 1 11 111233333 355667
Q ss_pred HHHHHHHHHHHHHhhCCCchh
Q 022601 262 NALMHVEDCLKYMSALRDHAI 282 (294)
Q Consensus 262 ~A~~~l~~A~~~~~~lp~~~~ 282 (294)
.++.+.++|.+.+..+|+.+.
T Consensus 309 ~a~~~~~~A~~~L~~lp~~~~ 329 (345)
T 3oyr_A 309 LAADYADKAKAALAMFPANDW 329 (345)
T ss_dssp HHHHHHHHHHHTTTTSCSSHH
T ss_pred HHHHHHHHHHHHHHhCCCcHH
Confidence 889999999999999998654
No 21
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=95.21 E-value=0.51 Score=43.15 Aligned_cols=143 Identities=11% Similarity=-0.015 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhhhHHHhhhhh-----hcCCHHHHHHHHHhhhhHH-HHHHHHhhcc-cCCCCC-ChhHHHHHHHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFICK-----EVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTEDL-APDSLSNSMGLFLQK 207 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~-----~~~t~~dL~~Y~~~vAg~V-g~l~~~ll~~-~~~~~~-~~~~~A~~lG~AlQl 207 (294)
..+.+.+....|..|...|+.. .-.|++++..-+++-.|++ ..+.+.+-.. +|.+.. ....++.++|.|+|+
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~l~~~g~~lG~aFQi 210 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQI 210 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444555566778898888844 2468888887777777777 6766665432 222221 156889999999999
Q ss_pred HHHHhch----------hhhhhcCCCCCccccHHHHHhcCCChhh---h---hc-ccC---CHHHH---HHH------HH
Q 022601 208 TNIIRDY----------LEDINEIPKCRMFWPREIWSKYVNKLED---L---KY-EEN---SDKAV---QCL------ND 258 (294)
Q Consensus 208 tniLRDi----------~~D~~~~~~gR~YLP~d~l~~~gv~~ed---l---~~-~~~---~~~~~---~~i------~~ 258 (294)
.|=+-|+ +.|+. .|.+=+|.=..-+.. +.++ + .. +.. .+.+. +++ ..
T Consensus 211 ~DD~ld~~~d~~~GK~~g~Dl~---egK~T~p~i~al~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 286 (330)
T 1wmw_A 211 VDDVLNLEGGEAYGKERAGDLY---EGKRTLILLRFLEEA-PPEERARALALLALPREAKPEAEVGWLLERLLASRALAW 286 (330)
T ss_dssp HHHHHHHSCSCCCSSSTTHHHH---HTCCCHHHHHHHHHS-CHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHH
T ss_pred HHccCcccCCcccCCCcCchhh---CCCCCHHHHHHHHhC-CHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHH
Confidence 9877775 57888 799988875433322 2111 2 11 111 12232 222 33
Q ss_pred HHHHHHHHHHHHHHHHh----hCCCchh
Q 022601 259 MVTNALMHVEDCLKYMS----ALRDHAI 282 (294)
Q Consensus 259 ~~~~A~~~l~~A~~~~~----~lp~~~~ 282 (294)
.-..++.+.++|.+.+. .+|..+.
T Consensus 287 a~~~~~~~~~~A~~~L~~~i~~lp~~~~ 314 (330)
T 1wmw_A 287 AKAEAKRLQAEGLALLEAAFQDLPGKEA 314 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGGCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcHH
Confidence 34668888999999999 9987543
No 22
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=95.11 E-value=0.075 Score=48.14 Aligned_cols=122 Identities=14% Similarity=0.028 Sum_probs=71.6
Q ss_pred HhhhHHHhhhh-h---hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCCChhHHHHHHHHHHHHHHHHhchhhhhhc
Q 022601 146 RMGAGMAKFIC-K---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINE 220 (294)
Q Consensus 146 ~m~~g~~~Dl~-~---~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~~~~~~~A~~lG~AlQltniLRDi~~D~~~ 220 (294)
.|..|...|+. . ...|.+++..-.+.-.|++..+.+.+-.. .|.+.+....++.++|.|+|+.|=+-|+-.|...
T Consensus 148 ~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~ 227 (297)
T 3m0g_A 148 GMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEEA 227 (297)
T ss_dssp THHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 46678888884 2 36788888888888888777766654332 2322224568999999999999877666433221
Q ss_pred CCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCch
Q 022601 221 IPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHA 281 (294)
Q Consensus 221 ~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~~ 281 (294)
.|. | . -+|+.+|+.+=.+.-.+..--+.++++.++|.+.+..+|..+
T Consensus 228 --~GK---~------~---g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~ 274 (297)
T 3m0g_A 228 --AGK---R------L---GKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEAA 274 (297)
T ss_dssp ---------------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGGG
T ss_pred --hCC---C------c---cchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 111 0 0 123444444444444455556778999999999999998753
No 23
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=94.84 E-value=0.19 Score=45.49 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=78.8
Q ss_pred HhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cC-CCC---CChhHHHHHHHHHHHHHHHHhchhhhh
Q 022601 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (294)
Q Consensus 146 ~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~-~~~---~~~~~~A~~lG~AlQltniLRDi~~D~ 218 (294)
.|..|...|+. ....|.+++..-++.-.|++..+.+.+-.. +| .+. .....++.++|.|+|+.|=+.|+-.|.
T Consensus 159 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~ 238 (302)
T 3p8r_A 159 GMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDT 238 (302)
T ss_dssp THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 56778888884 346788888887777777777766655432 12 111 234678999999999999888875544
Q ss_pred hcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 022601 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (294)
Q Consensus 219 ~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~ 280 (294)
.. .|+ | . -+|+.+|+.+=.+.-.+..--+.++++.++|.+.+..+|..
T Consensus 239 ~~--~GK---~------~---g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 239 ET--LGK---P------Q---GSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp ----------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HH--hCC---C------c---chHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 31 232 1 1 14566666666666677888899999999999999999875
No 24
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=94.83 E-value=0.4 Score=44.71 Aligned_cols=143 Identities=11% Similarity=0.058 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhh--------cCCHHHHHHHHHhhhhHH-HHHHHHhhcc-cC-CCC---CChhHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFICKE--------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TED---LAPDSLSNSM 201 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~~--------~~t~~dL~~Y~~~vAg~V-g~l~~~ll~~-~~-~~~---~~~~~~A~~l 201 (294)
..+++.+....+..|...|+... -.|++++..-+.+-.|.+ ..+.+.+-.. .| .+. .....++.++
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~l 256 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEM 256 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 34455566667788988898421 258888888888877877 5555444222 23 221 1245789999
Q ss_pred HHHHHHHHHHhchh----------hhhhcCCCCCccccHHHHHhcCCChhh---hhc--ccC-CHH---HHHHHH-----
Q 022601 202 GLFLQKTNIIRDYL----------EDINEIPKCRMFWPREIWSKYVNKLED---LKY--EEN-SDK---AVQCLN----- 257 (294)
Q Consensus 202 G~AlQltniLRDi~----------~D~~~~~~gR~YLP~d~l~~~gv~~ed---l~~--~~~-~~~---~~~~i~----- 257 (294)
|.|+|+.+=+-|+- .|+. .|.+=+|.=.--+. .++++ |.+ +.. .+. +++++.
T Consensus 257 G~aFQI~DDiLD~~gd~~~~GK~g~Dl~---~gK~T~p~l~al~~-a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~ 332 (374)
T 2qis_A 257 GEFFQIQDDYLDLFGDPSVTGKIGTDIQ---DNKCSWLVVQCLQR-ATPEQYQILKENYGQKEAEKVARVKALYEELDLP 332 (374)
T ss_dssp HHHHHHHHHHHHHHSCHHHHCSCCCTTT---TTCCCHHHHHHHHH-CCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHccCChhhcCCchhHHH---cCCccHHHHHHHHh-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcH
Confidence 99999998888873 5777 79998886533222 22221 211 111 222 333332
Q ss_pred -HHHHHHHHHHHHHHHHHhhCCCchh
Q 022601 258 -DMVTNALMHVEDCLKYMSALRDHAI 282 (294)
Q Consensus 258 -~~~~~A~~~l~~A~~~~~~lp~~~~ 282 (294)
.....++.++.+|.+.+..+|..+.
T Consensus 333 ~~~~~~~~~~~~~a~~~L~~lp~~~~ 358 (374)
T 2qis_A 333 AVFLQYEEDSYSHIMALIEQYAAPLP 358 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchH
Confidence 2244588899999999999997643
No 25
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=94.63 E-value=0.59 Score=42.49 Aligned_cols=120 Identities=10% Similarity=0.080 Sum_probs=76.0
Q ss_pred HhhhHHHhhhhh--h-cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cC--CCC---CChhHHHHHHHHHHHHHHHHhchhh
Q 022601 146 RMGAGMAKFICK--E-VESIDDYDEYCYYVAGLVGLGLSKLFYA-SG--TED---LAPDSLSNSMGLFLQKTNIIRDYLE 216 (294)
Q Consensus 146 ~m~~g~~~Dl~~--~-~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~--~~~---~~~~~~A~~lG~AlQltniLRDi~~ 216 (294)
.|..|...|+.. . -.|.+++..-.+.-.|++..+.+.+ .. .| .+. .....++.++|.|+|+.|=+.|+-.
T Consensus 159 ~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~g 237 (313)
T 3lom_A 159 GMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYA 237 (313)
T ss_dssp THHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 567788888842 2 6788998888877778777777776 43 23 121 1245789999999999998888754
Q ss_pred hhhcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 022601 217 DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (294)
Q Consensus 217 D~~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~ 280 (294)
|... .|+ | . -+|+.+|+.+=.+.-.+..--+.++++.++|.+.+..+|..
T Consensus 238 d~~~--~GK---~------~---g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 238 PTQI--LGK---G------R---SSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp C-----------------------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred CHHh--hCC---C------C---cchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4321 222 1 0 13444444444444456667788899999999999999864
No 26
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=94.57 E-value=0.97 Score=42.42 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhhHHHhhhh------------------h-h--------cCCHHHHHHHHHhhhhHH-HHHH---HHhhc
Q 022601 137 QDAIEDITKRMGAGMAKFIC------------------K-E--------VESIDDYDEYCYYVAGLV-GLGL---SKLFY 185 (294)
Q Consensus 137 ~~li~~~~~~m~~g~~~Dl~------------------~-~--------~~t~~dL~~Y~~~vAg~V-g~l~---~~ll~ 185 (294)
.+++.+....|..|...|+. . + -.|++++..-+++-.|.+ ..+. ..+++
T Consensus 180 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~la 259 (395)
T 2ihi_A 180 IATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLA 259 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHc
Confidence 34455555677788888882 0 1 357777776666666654 2222 22333
Q ss_pred ccCCCCC-----ChhHHHHHHHHHHHHHHHHhch----------hhhhhcCCCCCccccHHHHHhcCCChhh---hhc--
Q 022601 186 ASGTEDL-----APDSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPREIWSKYVNKLED---LKY-- 245 (294)
Q Consensus 186 ~~~~~~~-----~~~~~A~~lG~AlQltniLRDi----------~~D~~~~~~gR~YLP~d~l~~~gv~~ed---l~~-- 245 (294)
|.... ....++.++|.|+|+.+=+-|+ +.|+. .|.+=+|.=..-+. .++++ |.+
T Consensus 260 --g~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~l~al~~-~~~~~~~~L~~~~ 333 (395)
T 2ihi_A 260 --GIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPLIKTFEL-CSEPDKIKIVKNY 333 (395)
T ss_dssp --TCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTT---TTCCCHHHHHHHHH-CCHHHHHHHHHHC
T ss_pred --CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhh---cCCchHHHHHHHHh-CCHHHHHHHHHHh
Confidence 22222 2457899999999999988887 56888 79998886533332 22221 221
Q ss_pred ccCC-HH---HHH------HHHHHHHHHHHHHHHHHHHHhhCCCchh
Q 022601 246 EENS-DK---AVQ------CLNDMVTNALMHVEDCLKYMSALRDHAI 282 (294)
Q Consensus 246 ~~~~-~~---~~~------~i~~~~~~A~~~l~~A~~~~~~lp~~~~ 282 (294)
+..+ +. +++ ++....+.++.++.+|.+.+..+|..+.
T Consensus 334 ~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~ 380 (395)
T 2ihi_A 334 GKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGI 380 (395)
T ss_dssp C-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHHH
T ss_pred CCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCchH
Confidence 1112 22 222 3445557788999999999999998644
No 27
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=94.54 E-value=0.51 Score=43.69 Aligned_cols=144 Identities=10% Similarity=0.084 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhh-------------------cCCHHHHHHHHHhhhhHH-HHHHHHhhcc-cC-CCC--
Q 022601 136 YQDAIEDITKRMGAGMAKFICKE-------------------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TED-- 191 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~~-------------------~~t~~dL~~Y~~~vAg~V-g~l~~~ll~~-~~-~~~-- 191 (294)
..+++.+....|..|...|+... -.|++++..-+++-.|++ ..+.+.+-.. +| .+.
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~ 231 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVE 231 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHH
Confidence 34445555667788988888422 257888877777777776 5555444221 23 111
Q ss_pred -CChhHHHHHHHHHHHHHHHHhchh----------hhhhcCCCCCccccHHHHHhcCCChhh---hhc---ccCCH---H
Q 022601 192 -LAPDSLSNSMGLFLQKTNIIRDYL----------EDINEIPKCRMFWPREIWSKYVNKLED---LKY---EENSD---K 251 (294)
Q Consensus 192 -~~~~~~A~~lG~AlQltniLRDi~----------~D~~~~~~gR~YLP~d~l~~~gv~~ed---l~~---~~~~~---~ 251 (294)
.....++.++|.|+|+.+=+-|+- .|+. .|.+-+|.=..-+. .+.++ |.+ ....+ .
T Consensus 232 ~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~---egK~T~p~l~al~~-~~~~~~~~l~~~~~~~~~~~~~~ 307 (362)
T 1yhl_A 232 MNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIE---DAKCSWLAVTFLGK-ANAAQVAEFKANYGDKDPAKVAV 307 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHHHHHHTT-CCHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHh---cCCchHHHHHHHHh-CCHHHHHHHHHHHcCCCHHHHHH
Confidence 134688999999999998887763 6788 79998886433222 23222 211 11112 2
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHhhCCCchhh
Q 022601 252 AVQCLN------DMVTNALMHVEDCLKYMSALRDHAIF 283 (294)
Q Consensus 252 ~~~~i~------~~~~~A~~~l~~A~~~~~~lp~~~~~ 283 (294)
+++++. .....++.++++|.+.+..+|..+.+
T Consensus 308 ~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~ 345 (362)
T 1yhl_A 308 VKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPT 345 (362)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 333332 33467889999999999999976533
No 28
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=94.51 E-value=0.29 Score=44.34 Aligned_cols=120 Identities=18% Similarity=0.063 Sum_probs=78.2
Q ss_pred hhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCC-CC---CChhHHHHHHHHHHHHHHHHhchhhhhh
Q 022601 147 MGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGT-ED---LAPDSLSNSMGLFLQKTNIIRDYLEDIN 219 (294)
Q Consensus 147 m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~-~~---~~~~~~A~~lG~AlQltniLRDi~~D~~ 219 (294)
|..|...|+. ....|.+++..-++.-.|++..+.+.+-.. +|. +. .....++.++|.|+|+.|=+-|+-.|..
T Consensus 154 ~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~ 233 (304)
T 3lsn_A 154 MVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTA 233 (304)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChH
Confidence 6678888884 235788888888777777777776655432 233 21 1245789999999999998888865543
Q ss_pred cCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 022601 220 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (294)
Q Consensus 220 ~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~ 280 (294)
. .|. | . -+|+.+|+.+=.+.-.+..--+.++++.++|.+.+..+|..
T Consensus 234 ~--~GK---~------~---g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 280 (304)
T 3lsn_A 234 T--LGK---R------Q---GADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA 280 (304)
T ss_dssp H--C------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred H--hCC---C------c---ccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 2 332 1 0 13455555555555567777888999999999999999864
No 29
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=94.51 E-value=0.23 Score=45.63 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=75.1
Q ss_pred HHhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchhhhh
Q 022601 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (294)
Q Consensus 145 ~~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltniLRDi~~D~ 218 (294)
..|..|...|+. ..-.|++++..-.+.-.|++....+.+-.. .|.+. .....++.++|.|+|+.|=+-|+-.|.
T Consensus 192 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 271 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA 271 (335)
T ss_dssp TSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 456778888884 236788888888888888877766655332 23221 134578999999999998888875443
Q ss_pred hcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022601 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (294)
Q Consensus 219 ~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~ 279 (294)
.. .|. | . -+|+.+|+.+--+.-.++.--..++++.++|.+.+..+|.
T Consensus 272 ~~--~GK---~------~---g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 272 AT--MGK---A------T---GKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp ----------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HH--hCC---C------c---chHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 21 121 1 0 1244444444444445667778899999999999998885
No 30
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=94.51 E-value=2.5 Score=37.80 Aligned_cols=119 Identities=12% Similarity=-0.010 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhcCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCCC---ChhHHHHHHHHHHHHHHHHh
Q 022601 136 YQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL---APDSLSNSMGLFLQKTNIIR 212 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~~---~~~~~A~~lG~AlQltniLR 212 (294)
..+.+.+.+..|..|...|+.. .++.....+.-.|++....+.+-...+.+.+ ....++.++|.|+|+.+=+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~----~~~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~l~~~g~~lG~aFQi~DDil 211 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD----NSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFV 211 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT----TSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445556778888888753 4555566666667766665554332221111 24578999999999998888
Q ss_pred chh----hhhhcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022601 213 DYL----EDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (294)
Q Consensus 213 Di~----~D~~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~ 279 (294)
|+- .|.. .|.+-+|.=. .+.|. .+++ -..++.+.++|.+.+..+|.
T Consensus 212 D~~~~~K~dl~---~gk~Tlp~l~-~~~g~--------------~~a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 212 DYKTKKVEEID---GSAKQLFKYY-REGKL--------------EEYV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp HHTTSCTTTCC---TTGGGGHHHH-TTTCH--------------HHHH---HHHHHHHHHHHHHHHHTSCC
T ss_pred hhcCCCChhhh---cCcccHHHHH-HcCCH--------------HHHH---HHHHHHHHHHHHHHHHhCCC
Confidence 874 3454 5667777543 22221 1111 23789999999999999987
No 31
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=94.48 E-value=0.41 Score=44.46 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhhHHHhhhhh-h-------cCCHHHHHHHHHhhhhHH-HHHHHHhhcc-cC-CCC---CChhHHHHHH
Q 022601 136 YQDAIEDITKRMGAGMAKFICK-E-------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TED---LAPDSLSNSM 201 (294)
Q Consensus 136 ~~~li~~~~~~m~~g~~~Dl~~-~-------~~t~~dL~~Y~~~vAg~V-g~l~~~ll~~-~~-~~~---~~~~~~A~~l 201 (294)
..+++.+....|..|...|+.. . -.|++++..=+++-.|++ ..+.+.+-.. .| .+. .....++.++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~l 249 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEM 249 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 3445555666778898889842 1 358888877777777766 4444433221 13 221 1246789999
Q ss_pred HHHHHHHHHHhchh----------hhhhcCCCCCccccHHHHHhcCCChhh---hhc--ccC-CHH---HHHHHH-----
Q 022601 202 GLFLQKTNIIRDYL----------EDINEIPKCRMFWPREIWSKYVNKLED---LKY--EEN-SDK---AVQCLN----- 257 (294)
Q Consensus 202 G~AlQltniLRDi~----------~D~~~~~~gR~YLP~d~l~~~gv~~ed---l~~--~~~-~~~---~~~~i~----- 257 (294)
|.|+|+.+=+-|+- .|+. .|.+=+|.=..-+. .++++ |.+ +.. .+. ++++++
T Consensus 250 G~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~l~al~~-~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~ 325 (367)
T 1uby_A 250 GEYFQIQDDYLDCFGDPALTGAVGTDIQ---DNKCSWLVVQCLQR-VTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMR 325 (367)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSCCCCCSS---SCCCCHHHHHHHHH-CCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhcCChhhcCCchhhHH---cCCchHHHHHHHHh-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcH
Confidence 99999998888874 5777 79998886533222 23322 211 111 222 222222
Q ss_pred -HHHHHHHHHHHHHHHHHhhCCCch
Q 022601 258 -DMVTNALMHVEDCLKYMSALRDHA 281 (294)
Q Consensus 258 -~~~~~A~~~l~~A~~~~~~lp~~~ 281 (294)
.....++.++++|.+.+..+|..+
T Consensus 326 ~~~~~~~~~~~~~A~~~L~~lp~~~ 350 (367)
T 1uby_A 326 AAFQQYEESSYRRLQELIEKHSNRL 350 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 122468899999999999998754
No 32
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=94.46 E-value=0.53 Score=43.23 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=82.3
Q ss_pred HHHHHHHHhhhHHHhhhh-h-h----cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCC--CCChhHHHHHHHHHHHHHH
Q 022601 139 AIEDITKRMGAGMAKFIC-K-E----VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTE--DLAPDSLSNSMGLFLQKTN 209 (294)
Q Consensus 139 li~~~~~~m~~g~~~Dl~-~-~----~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~--~~~~~~~A~~lG~AlQltn 209 (294)
++.+.+..|..|...|+. . . ..|++++..-+++-.|++..+.+.+... +|.. ......++.++|.|+|+.+
T Consensus 135 ~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQi~D 214 (340)
T 2e8v_A 135 IFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRD 214 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566778888884 2 1 4588888888888888877777665433 2222 1345689999999999998
Q ss_pred HHhch-----------hhhhhcCCCCCccccHHHHHhcCCC------hhhh---h-cccCCHH----HHHHHH-------
Q 022601 210 IIRDY-----------LEDINEIPKCRMFWPREIWSKYVNK------LEDL---K-YEENSDK----AVQCLN------- 257 (294)
Q Consensus 210 iLRDi-----------~~D~~~~~~gR~YLP~d~l~~~gv~------~edl---~-~~~~~~~----~~~~i~------- 257 (294)
=+-|+ +.|+. .|.+-+|.=..-+..-. .+.+ . .+..++. +.+++.
T Consensus 215 D~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~ 291 (340)
T 2e8v_A 215 DYLNLKDFQMSSEKGFAEDIT---EGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLA 291 (340)
T ss_dssp HHHHHHC-----CCCTTHHHH---TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHH
T ss_pred HHHhccCChhhhCCCchhhHh---cCCchHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHH
Confidence 77776 47888 79998886433222111 1112 2 2222333 333333
Q ss_pred HHHHHHHHHHHHHHHH-----HhhCCCch
Q 022601 258 DMVTNALMHVEDCLKY-----MSALRDHA 281 (294)
Q Consensus 258 ~~~~~A~~~l~~A~~~-----~~~lp~~~ 281 (294)
+.-+.++.+.++|.+. +..+|..+
T Consensus 292 ~~~~~~~~~~~~A~~~~~~~~L~~lp~~~ 320 (340)
T 2e8v_A 292 YTKNFINQLVNMIKNDNENKYLPDLASHS 320 (340)
T ss_dssp HHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHhccCcccHhhCCCCc
Confidence 4557788889999998 99998765
No 33
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=94.37 E-value=0.2 Score=45.85 Aligned_cols=121 Identities=15% Similarity=0.056 Sum_probs=78.1
Q ss_pred HhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cC-CCC---CChhHHHHHHHHHHHHHHHHhchhhhh
Q 022601 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (294)
Q Consensus 146 ~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~-~~~---~~~~~~A~~lG~AlQltniLRDi~~D~ 218 (294)
.|..|...|+. ..-.|.+++..-.+.-.|++..+.+.+-.. .| .+. .....++.++|.|+|+.+=+-|+-.|.
T Consensus 159 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~ 238 (324)
T 3ts7_A 159 GMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDT 238 (324)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 46778888884 236788998888888888887777665433 23 221 124578999999999999888875443
Q ss_pred hcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 022601 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (294)
Q Consensus 219 ~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~ 280 (294)
.. .|+ | . -+|+.+|+.+=.+.-.+..--+.++++.++|.+.+..+|..
T Consensus 239 ~~--~GK---~------~---g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 239 QT--LGK---T------R---GKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp ----------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred HH--hCC---C------c---cchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 31 222 0 1 13445555555455556777788999999999999999875
No 34
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=94.19 E-value=0.5 Score=43.36 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=88.4
Q ss_pred HHHHHHHHhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHH
Q 022601 139 AIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNII 211 (294)
Q Consensus 139 li~~~~~~m~~g~~~Dl~~---~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltniL 211 (294)
.+.+....|..|...|+.. .-.|++++..-++.-.|++..+.+.+-.. +|.+. .....++.++|.|+|+.|=+
T Consensus 141 ~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ 220 (342)
T 1wy0_A 141 VIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDV 220 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455777888888842 24588888888888888877776665432 23222 13457899999999999877
Q ss_pred hch-----------hhhhhcCCCCCccccHHHHHhcCCChhh---hh---cccC-------------CHHH---HHHH--
Q 022601 212 RDY-----------LEDINEIPKCRMFWPREIWSKYVNKLED---LK---YEEN-------------SDKA---VQCL-- 256 (294)
Q Consensus 212 RDi-----------~~D~~~~~~gR~YLP~d~l~~~gv~~ed---l~---~~~~-------------~~~~---~~~i-- 256 (294)
-|+ +.|+. .|.+=+|.=..-+.. +.++ +. .... .+.+ ++++
T Consensus 221 lD~~~d~~~~GK~~g~Dl~---egK~Tlp~i~al~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~ 296 (342)
T 1wy0_A 221 LDLIADEKKLGKPVGSDIR---KGKKTLIVAHFFENA-DEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKK 296 (342)
T ss_dssp HHHHSCHHHHTSCSCHHHH---HTCCCHHHHHHHHHC-CHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHH
T ss_pred HhccCChhhhCCCchhHHh---CCCCcHHHHHHHHhC-CHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHH
Confidence 775 47887 689888875433322 2211 11 1111 1122 2222
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhCCCchh
Q 022601 257 ----NDMVTNALMHVEDCLKYMSALRDHAI 282 (294)
Q Consensus 257 ----~~~~~~A~~~l~~A~~~~~~lp~~~~ 282 (294)
......++.+.++|.+.+..+|+.+.
T Consensus 297 ~g~~~~~~~~~~~~~~~A~~~L~~l~~~~~ 326 (342)
T 1wy0_A 297 YGSIDYAAEIAKDMIKKANEALRILPKSKA 326 (342)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTGGGSCCCHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 24457788999999999999997543
No 35
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=94.05 E-value=0.39 Score=43.63 Aligned_cols=120 Identities=15% Similarity=0.021 Sum_probs=77.3
Q ss_pred HhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhchhhhhh
Q 022601 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYLEDIN 219 (294)
Q Consensus 146 ~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~~---~~~~~A~~lG~AlQltniLRDi~~D~~ 219 (294)
.|..|...|+. ....|.+++..-.+.-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.+=+-|+--|..
T Consensus 156 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~ 235 (309)
T 3pde_A 156 GMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPA 235 (309)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 46678888884 235688888887777778777776655332 232221 245789999999999998888854433
Q ss_pred cCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022601 220 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (294)
Q Consensus 220 ~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~ 279 (294)
. .|. | . -+|+.+|+.+=.+.-.++.--..+++++.+|.+.+..+|+
T Consensus 236 ~--~GK---~------~---g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~ 281 (309)
T 3pde_A 236 E--MGK---A------T---QKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPT 281 (309)
T ss_dssp -----------------------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred H--hCC---C------c---cchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 1 222 1 1 1455556666556666677778888899999999888654
No 36
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=94.02 E-value=0.27 Score=44.59 Aligned_cols=120 Identities=9% Similarity=-0.027 Sum_probs=75.1
Q ss_pred HhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchhhhhh
Q 022601 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDIN 219 (294)
Q Consensus 146 ~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltniLRDi~~D~~ 219 (294)
.|..|...|+. ....|.+++..-.+.-.|++..+.+.+-.. .|... .....++.++|.|+|+.+=+.|+--|..
T Consensus 157 ~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~ 236 (302)
T 3p8l_A 157 GMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEA 236 (302)
T ss_dssp THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 46678888884 235688888877777777777766655332 22221 1245789999999999998888855443
Q ss_pred cCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022601 220 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (294)
Q Consensus 220 ~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~ 279 (294)
. .|.- . -+|+.+|+.+=.+.-.++.--+.++++.++|.+.+..+|+
T Consensus 237 ~--~GK~---------~---g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~ 282 (302)
T 3p8l_A 237 D--LGKK---------V---GRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKA 282 (302)
T ss_dssp ----------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--hCCC---------h---hhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 2221 1 2455666666666667777788899999999999999863
No 37
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=93.98 E-value=1 Score=41.80 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=83.5
Q ss_pred HHHHHHHHhhhHHHhhhhhh----cCCH-HHHHHHHHhhhhHH-HHHHHH---hhcccCCC---CCChhHHHHHHHHHHH
Q 022601 139 AIEDITKRMGAGMAKFICKE----VESI-DDYDEYCYYVAGLV-GLGLSK---LFYASGTE---DLAPDSLSNSMGLFLQ 206 (294)
Q Consensus 139 li~~~~~~m~~g~~~Dl~~~----~~t~-~dL~~Y~~~vAg~V-g~l~~~---ll~~~~~~---~~~~~~~A~~lG~AlQ 206 (294)
++.+....|..|...|+... -.+. +++..=+++-.|.+ ..+.+. +++..+.+ ......++.++|.|+|
T Consensus 172 ~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQ 251 (368)
T 2her_A 172 IYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQ 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Confidence 44444556778888888432 2344 44444344444554 333333 23211111 1235689999999999
Q ss_pred HHHHHhch------hhhhhcCCCCCccccHHHHHhcCCChhh---hhc--ccCCHHHHHHH------HHHHHHHHHHHHH
Q 022601 207 KTNIIRDY------LEDINEIPKCRMFWPREIWSKYVNKLED---LKY--EENSDKAVQCL------NDMVTNALMHVED 269 (294)
Q Consensus 207 ltniLRDi------~~D~~~~~~gR~YLP~d~l~~~gv~~ed---l~~--~~~~~~~~~~i------~~~~~~A~~~l~~ 269 (294)
+.+=+-|+ +.|+. .|.+=+|.=..-+ ..++++ |.+ +..+..+++++ ....+.++.++++
T Consensus 252 I~DD~LD~~~~GK~g~Dl~---egK~T~pvi~al~-~a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~ 327 (368)
T 2her_A 252 VHNDVSDYLFNDSNADDIC---RFKLTWPLQKSFE-IADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDY 327 (368)
T ss_dssp HHHHHHHHHSCCSSSCTTT---TTCCCHHHHSSTT-TCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCChHh---CCcccHHHHHHHH-hCCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 99888776 58998 8999888643222 122222 211 11115555554 4455678899999
Q ss_pred HHHHHhhCCCchh
Q 022601 270 CLKYMSALRDHAI 282 (294)
Q Consensus 270 A~~~~~~lp~~~~ 282 (294)
|.+.+..+|..+.
T Consensus 328 A~~~L~~lp~~~~ 340 (368)
T 2her_A 328 LIKLVKDITDDSL 340 (368)
T ss_dssp HHHHHTTCSCHHH
T ss_pred HHHHHHhCCCcHH
Confidence 9999999998644
No 38
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=93.28 E-value=0.8 Score=42.77 Aligned_cols=134 Identities=11% Similarity=-0.009 Sum_probs=81.6
Q ss_pred HHHhhhHHHhhhh---hhcCCHHHHHHHHHhhhhHH-HHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhch-
Q 022601 144 TKRMGAGMAKFIC---KEVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDY- 214 (294)
Q Consensus 144 ~~~m~~g~~~Dl~---~~~~t~~dL~~Y~~~vAg~V-g~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltniLRDi- 214 (294)
...|..|...|+. +...|.+++..-+.+-.|++ ....+.+-.. .|.+. .....++.++|.|+|+.+=+-|+
T Consensus 184 ~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~ 263 (380)
T 3lk5_A 184 RTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVF 263 (380)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456778888884 23458888877666666665 3444433221 12221 23457899999999999877776
Q ss_pred ----------hhhhhcCCCCCccccHHHHHhcCC--Ch---hhh---hcccCC-H---HHHHH------HHHHHHHHHHH
Q 022601 215 ----------LEDINEIPKCRMFWPREIWSKYVN--KL---EDL---KYEENS-D---KAVQC------LNDMVTNALMH 266 (294)
Q Consensus 215 ----------~~D~~~~~~gR~YLP~d~l~~~gv--~~---edl---~~~~~~-~---~~~~~------i~~~~~~A~~~ 266 (294)
+.|+. .|.+-+|.=..-+..- ++ +.| ..+..+ + .++++ +......++.+
T Consensus 264 gd~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~ 340 (380)
T 3lk5_A 264 GDPAITGKPAGDDIR---EGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQL 340 (380)
T ss_dssp SCHHHHSSCTTHHHH---TTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CChhhhCCCchhhHh---cCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 57888 7999888643332210 11 112 111122 2 23333 34455678899
Q ss_pred HHHHHHHHhhCCCc
Q 022601 267 VEDCLKYMSALRDH 280 (294)
Q Consensus 267 l~~A~~~~~~lp~~ 280 (294)
.++|.+.+..+|..
T Consensus 341 ~~~A~~~L~~lp~~ 354 (380)
T 3lk5_A 341 TESGLAHLDDVDIP 354 (380)
T ss_dssp HHHHHHHGGGSCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999999953
No 39
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=93.16 E-value=0.24 Score=44.72 Aligned_cols=120 Identities=18% Similarity=0.123 Sum_probs=77.8
Q ss_pred HhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhccc--CCCC---CChhHHHHHHHHHHHHHHHHhchhhhh
Q 022601 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYAS--GTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (294)
Q Consensus 146 ~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~--~~~~---~~~~~~A~~lG~AlQltniLRDi~~D~ 218 (294)
.|..|...|+. ....|++++..-++.-.|++....+.+-... |.+. .....++.++|.|+|+.|=+-|+-.|.
T Consensus 153 ~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~ 232 (299)
T 1rqj_A 153 GMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDT 232 (299)
T ss_dssp THHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 56778888884 2356888888888777777776666553321 1111 124578999999999998888875443
Q ss_pred hcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022601 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (294)
Q Consensus 219 ~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~ 279 (294)
.. .|. | .-+|+.+|+.+--+.-.+...-..++.+.++|.+.+..+|.
T Consensus 233 ~~--~GK---~---------~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 233 AT--LGK---R---------QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp HH--HSS---C---------TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH--hCC---C---------hhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 21 121 1 01344445544444445566677888899999999888875
No 40
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=93.04 E-value=1.1 Score=41.96 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhhHHHhhhhh-------------------hcCCHHHHHHHHHhhhhHH-HHHHHHhhcc-cCCCCC---
Q 022601 137 QDAIEDITKRMGAGMAKFICK-------------------EVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTEDL--- 192 (294)
Q Consensus 137 ~~li~~~~~~m~~g~~~Dl~~-------------------~~~t~~dL~~Y~~~vAg~V-g~l~~~ll~~-~~~~~~--- 192 (294)
.+++.+....+..|...|+.. .-.|++++..-+++-.|++ ..+.+.+-.. .|...+
T Consensus 181 ~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~ 260 (390)
T 3dyh_A 181 LCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDM 260 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHH
Confidence 344445556777888888843 1357777777677777765 4444333211 122222
Q ss_pred -ChhHHHHHHHHHHHHHHHHhchh----------hhhhcCCCCCccccHHHHHhcCCChhh---hhc--ccCCH-H---H
Q 022601 193 -APDSLSNSMGLFLQKTNIIRDYL----------EDINEIPKCRMFWPREIWSKYVNKLED---LKY--EENSD-K---A 252 (294)
Q Consensus 193 -~~~~~A~~lG~AlQltniLRDi~----------~D~~~~~~gR~YLP~d~l~~~gv~~ed---l~~--~~~~~-~---~ 252 (294)
....++.++|.|+|+.+=+-|+- .|+. .|.+=+|.=..-+.. ++++ |.+ +..++ . +
T Consensus 261 ~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~pvi~al~~~-~~~~r~~L~~~~~~~~~~~v~~v 336 (390)
T 3dyh_A 261 GVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQ---DAKCSWLAVTFLAKA-SSAQVAEFKANYGSGDSEKVATV 336 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHHHHHHHHC-CHHHHHHHHTTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhh---cCCccHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHH
Confidence 24578999999999998888873 5888 899988764433332 2222 221 11222 2 3
Q ss_pred HHH------HHHHHHHHHHHHHHHHHHHhhCCCch
Q 022601 253 VQC------LNDMVTNALMHVEDCLKYMSALRDHA 281 (294)
Q Consensus 253 ~~~------i~~~~~~A~~~l~~A~~~~~~lp~~~ 281 (294)
+++ +......++.++.++.+.+..||..+
T Consensus 337 ~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~ 371 (390)
T 3dyh_A 337 RRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCS 371 (390)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 333 22334456788899999999998754
No 41
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=89.24 E-value=3.5 Score=37.32 Aligned_cols=117 Identities=18% Similarity=0.054 Sum_probs=74.8
Q ss_pred HhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC----CChhHHHHHHHHHHHHHHHHhchhhhh
Q 022601 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED----LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (294)
Q Consensus 146 ~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~----~~~~~~A~~lG~AlQltniLRDi~~D~ 218 (294)
.|..|...|+. ..-.|.+++..-+.+-.|++..+.+.+-.. .|.+. .....++.++|.|+|+.|=+-|+--|.
T Consensus 160 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~ 239 (311)
T 3llw_A 160 GMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDE 239 (311)
T ss_dssp THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 56778888884 345688888887777777766666554322 13222 124578899999999999888887665
Q ss_pred hcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 022601 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (294)
Q Consensus 219 ~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp 278 (294)
.. .|. |. .+ .+|+.+=.+.-.+..--..+++++++|.+.+..++
T Consensus 240 ~~--~GK---~~----------g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 283 (311)
T 3llw_A 240 EE--SGK---TT----------HL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALK 283 (311)
T ss_dssp ---------------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HH--HCc---cc----------cc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 42 332 11 11 44555655666667777888999999999998844
No 42
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=89.20 E-value=2.1 Score=37.97 Aligned_cols=106 Identities=12% Similarity=-0.007 Sum_probs=66.9
Q ss_pred HhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchhhhhh
Q 022601 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDIN 219 (294)
Q Consensus 146 ~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltniLRDi~~D~~ 219 (294)
.|..|...|+. ....|.+++..-++.-.|++..+.+.+-.. .|.+. .....++.++|.|+|+.+= ..
T Consensus 150 ~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD-------~~ 222 (274)
T 3kra_B 150 GMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEM-------KN 222 (274)
T ss_dssp THHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH-------TT
T ss_pred HHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh-------hc
Confidence 35678888884 236788888877777778777776665332 23222 1245788899999999652 12
Q ss_pred cCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc---hhhhhhhhhhhh
Q 022601 220 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH---AIFRFCAIPQVR 292 (294)
Q Consensus 220 ~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~---~~~~~c~~p~~~ 292 (294)
.|+ .+....++.++++|.+.++.+|.. |+.+|.+=|-+.
T Consensus 223 ---~~~-------------------------------~~~~~~~~~~~~~A~~~L~~~~~~~~~pl~~~~~~~~~~ 264 (274)
T 3kra_B 223 ---SHQ-------------------------------LIDENIIGKLKELALEELGGFHGKNAELMSSLVAEPSLY 264 (274)
T ss_dssp ---TSC-------------------------------CCCHHHHHHHHHHHHHHHTTSCSSHHHHTGGGGC-----
T ss_pred ---ccc-------------------------------HHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHhCcHHH
Confidence 222 111356888899999999999976 455666555543
No 43
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=89.15 E-value=4.4 Score=36.24 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=75.3
Q ss_pred HhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchhhhhh
Q 022601 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDIN 219 (294)
Q Consensus 146 ~m~~g~~~Dl~--~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltniLRDi~~D~~ 219 (294)
.|..|...|+. ..-.|.+++..-++.-.|++..+.+.+-.. .|.+. .....++.++|.|+|+.|=+.|+-.|..
T Consensus 146 ~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~ 225 (291)
T 3npk_A 146 GMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQE 225 (291)
T ss_dssp THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChH
Confidence 46678888884 245688888888878888777776664321 22222 1245789999999999998888877664
Q ss_pred cCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 022601 220 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (294)
Q Consensus 220 ~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~ 280 (294)
. .|.-. |. | +|+.+=.+.-.++.--..+++++.+|.+.+..++..
T Consensus 226 ~--~GK~~---------~~---d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 226 Q--SGKPT---------NN---D--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp ----------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred H--HCCcc---------ch---h--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 2 34321 11 1 455665566666777778899999999999988764
No 44
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=86.03 E-value=22 Score=33.01 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=69.2
Q ss_pred CHHHHHHHHHhhhhHH-HHHHH---HhhcccCCCC---CChhHHHHHHHHHHHHHHHHhch----------hhhhhcCCC
Q 022601 161 SIDDYDEYCYYVAGLV-GLGLS---KLFYASGTED---LAPDSLSNSMGLFLQKTNIIRDY----------LEDINEIPK 223 (294)
Q Consensus 161 t~~dL~~Y~~~vAg~V-g~l~~---~ll~~~~~~~---~~~~~~A~~lG~AlQltniLRDi----------~~D~~~~~~ 223 (294)
|++++..=+++-.|++ ....+ .+++....+. .....++.++|.|+|+.+=+-|+ +.|+. .
T Consensus 231 t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~---e 307 (395)
T 3mav_A 231 NFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---N 307 (395)
T ss_dssp SHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTT---T
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHh---c
Confidence 6666655555555554 22222 2232111111 12457889999999999888786 57888 7
Q ss_pred CCccccHHHHHhcCCChhh---hhc--ccCCHH----HHHHH------HHHHHHHHHHHHHHHHHHhhCCCchhh
Q 022601 224 CRMFWPREIWSKYVNKLED---LKY--EENSDK----AVQCL------NDMVTNALMHVEDCLKYMSALRDHAIF 283 (294)
Q Consensus 224 gR~YLP~d~l~~~gv~~ed---l~~--~~~~~~----~~~~i------~~~~~~A~~~l~~A~~~~~~lp~~~~~ 283 (294)
|.+=+|.=..-+. .+.++ |.. +..++. +++++ ......++.+.+++...+..+|+.+..
T Consensus 308 gK~T~p~i~al~~-~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~l~ 381 (395)
T 3mav_A 308 NKLTWPLIKTFEL-CSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIE 381 (395)
T ss_dssp TCCCHHHHHHHHH-SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCchHHHHHHHHh-CCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 9998886543332 23222 221 233332 23322 233455788889999999999987654
No 45
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=85.48 E-value=13 Score=34.31 Aligned_cols=85 Identities=19% Similarity=0.283 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHHHHHHHhc------hhhhhhcCCCCCccccHHHHHhcCCChhh---hhc--ccCCHHHHHHHHH---
Q 022601 193 APDSLSNSMGLFLQKTNIIRD------YLEDINEIPKCRMFWPREIWSKYVNKLED---LKY--EENSDKAVQCLND--- 258 (294)
Q Consensus 193 ~~~~~A~~lG~AlQltniLRD------i~~D~~~~~~gR~YLP~d~l~~~gv~~ed---l~~--~~~~~~~~~~i~~--- 258 (294)
....++..+|.|+|+.+=+-| ++.|+. .|.+=+|.=..- ...++++ |.. ++..+.+++++..
T Consensus 238 ~l~~~g~~lG~aFQI~DDiLD~~~gK~~g~Dl~---egK~T~p~i~al-~~~~~~~r~~L~~~~~~~~~~vk~l~~~l~~ 313 (368)
T 2q58_A 238 LIEAILYKLGEFYQVHNDVSDYLFNDSNADDIC---RFKLTWPLQKSF-EIADEEMKLKISENYGKNSSLVKDCYNLLKI 313 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSCCCSSCTTT---SCCCCHHHHSST-TTCCHHHHHHHHHHTTTCHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCchHh---cCCcHHHHHHHH-HhCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 356889999999999988888 468999 899988854221 1223333 211 3344444444332
Q ss_pred ---HHHHHHHHHHHHHHHHhhCCCch
Q 022601 259 ---MVTNALMHVEDCLKYMSALRDHA 281 (294)
Q Consensus 259 ---~~~~A~~~l~~A~~~~~~lp~~~ 281 (294)
..+.++..++++.+.+..+|...
T Consensus 314 ~~~~~ey~~~~~~~~~~~i~~l~~~~ 339 (368)
T 2q58_A 314 NEHYLEYQRNALDYLIKLVKDITDDS 339 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchh
Confidence 34557788889999999998764
No 46
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=84.49 E-value=6.6 Score=35.04 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=66.8
Q ss_pred HhhhHHHhhhhhh-----cCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchhh
Q 022601 146 RMGAGMAKFICKE-----VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLE 216 (294)
Q Consensus 146 ~m~~g~~~Dl~~~-----~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltniLRDi~~ 216 (294)
.|..|...|+... -.|++++..-++.-.|++..+.+.+-.. .|.+. .....++.++|.|+|+.+=+-|+-.
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~ 240 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK 240 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4677888888422 2355556555566667766666554332 23221 1245788999999999988887755
Q ss_pred hhhcCCCCCccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022601 217 DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (294)
Q Consensus 217 D~~~~~~gR~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~ 279 (294)
|.. .-+|. .-.+..-.+.++++.++|.+.+..+|.
T Consensus 241 ~~K------~T~p~----------------------l~gle~a~~~a~~~~~~A~~~L~~l~~ 275 (293)
T 2j1p_A 241 SSK------LTYPK----------------------LMGLEKSREFAEKLNTEARDQLLGFDS 275 (293)
T ss_dssp --C------CCHHH----------------------HHHHHHHHHHHHHHHHHHHHHTTTSCT
T ss_pred Ccc------ccHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 432 33342 113455667788899999999999974
No 47
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=80.10 E-value=36 Score=31.16 Aligned_cols=183 Identities=10% Similarity=-0.055 Sum_probs=96.7
Q ss_pred HHHHHhcChhhhH---HHHHHHHHHhhhccccCCCC--CChhhhHHHHHHHHHHHcccccccccCCCccHHHHhhHHHHH
Q 022601 52 ALVIQQLGTDLRN---AVCIFYLVLRALDTVEDDTS--IPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVS 126 (294)
Q Consensus 52 y~a~~llP~~~R~---a~~alYAf~R~~DdI~D~~~--~~~~~k~~~L~~w~~~l~~~~~~~~~g~~~~~~l~~al~~~~ 126 (294)
.+++.+.|..... -+.-+..|.-..||+-|+.. ...+.-....+.....+.+.. . ......|+..++.++.
T Consensus 92 ~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l~~~~---~-~p~~~~p~~~al~dl~ 167 (382)
T 3kb9_A 92 DLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSPG---D-HLHHEDTLVAGFADSV 167 (382)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHSCG---G-GTTCSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHhcCCC---C-CCCCCChHHHHHHHHH
Confidence 4455666754444 44556667778999999632 122211111222223333210 0 0113346777788887
Q ss_pred HHHHhc-ChhHHHHHHHHHHHhhhHHHhhh----hhhcCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCCC-------Ch
Q 022601 127 TAFLEL-GKGYQDAIEDITKRMGAGMAKFI----CKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-------AP 194 (294)
Q Consensus 127 ~~~~~~-~~~~~~li~~~~~~m~~g~~~Dl----~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~~-------~~ 194 (294)
.++... .......+.+-+..+..++.... ...++|++|...+-..+.|.--.+.+-.++. |..-+ ..
T Consensus 168 ~~~~~~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~~ 246 (382)
T 3kb9_A 168 RRLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSS-GCELPDAVRKHPAY 246 (382)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHc-CCCCCHHHHhChHH
Confidence 776533 22222222233444555654433 2358999888888777777532222222211 22111 12
Q ss_pred hHHHHHHHHHHHHHHHHhchhhhhhcCCCCCc-cccHHHHHhcCCChhh
Q 022601 195 DSLSNSMGLFLQKTNIIRDYLEDINEIPKCRM-FWPREIWSKYVNKLED 242 (294)
Q Consensus 195 ~~~A~~lG~AlQltniLRDi~~D~~~~~~gR~-YLP~d~l~~~gv~~ed 242 (294)
..+-+..+...-|+|=|-....... +|.+ =+-.=.|+++|++.++
T Consensus 247 ~~l~~~~~~i~rL~NDi~S~~kE~~---~G~~~N~V~~~m~~~g~s~ee 292 (382)
T 3kb9_A 247 RRAALLSQEFAAWYNDLCSLPKEIA---GDEVHNLGISLITHHSLTLEE 292 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---TTCCCSHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCcccHHHHHHHcCCCCHHH
Confidence 2345567777777887777777777 7764 2223367788998765
No 48
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=77.77 E-value=47 Score=31.19 Aligned_cols=184 Identities=11% Similarity=-0.039 Sum_probs=90.2
Q ss_pred HHHHHhcChh-hhHH---HHHHHHHHhhhccc-cCCCCCChhhhHHHHHHHHHHHcccccccccCCC------ccHHHHh
Q 022601 52 ALVIQQLGTD-LRNA---VCIFYLVLRALDTV-EDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTK------EYKVLMD 120 (294)
Q Consensus 52 y~a~~llP~~-~R~a---~~alYAf~R~~DdI-~D~~~~~~~~k~~~L~~w~~~l~~~~~~~~~g~~------~~~~l~~ 120 (294)
.+++...|.. ..+. +.-+..+.-..||. .|+...+......++..++..+..-..... |.+ ...|+..
T Consensus 161 llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~~~~-g~p~~~~~~~~dp~~~ 239 (433)
T 3v1v_A 161 RYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHSTAE-YTPTWQASLAADAPRR 239 (433)
T ss_dssp HHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCCCTT-THHHHHHHTTSSHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhcccC-CCCccccccCCchHHH
Confidence 4455556655 3433 34444556678999 787332111112233333333321000011 211 1235667
Q ss_pred hHHHHHHHHHhcC-h-hHHHHHHHHHHHhhhHHHhhh----hhhcCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCCC--
Q 022601 121 QFHHVSTAFLELG-K-GYQDAIEDITKRMGAGMAKFI----CKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-- 192 (294)
Q Consensus 121 al~~~~~~~~~~~-~-~~~~li~~~~~~m~~g~~~Dl----~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~~-- 192 (294)
++..+..++.... . ....+++ -++.+..++.... ...++|++|...+-..+++.....+..... |..-.
T Consensus 240 al~d~~~~l~~~a~~~q~~r~~~-~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~~~l~e~~~--g~~lp~~ 316 (433)
T 3v1v_A 240 AYDSAMGYFVRAATPSQSDRYRH-DMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTITDTVG--GYELPAD 316 (433)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTTGGGHHHHH--TCCCCHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHHHHc--CCCCCHH
Confidence 7888877765332 2 2222332 2333444544332 245899999888776653221111122221 12111
Q ss_pred -----ChhHHHHHHHHHHHHHHHHhchhhhhhcCCCC-Cc-cccHHHHHhcCCChhh
Q 022601 193 -----APDSLSNSMGLFLQKTNIIRDYLEDINEIPKC-RM-FWPREIWSKYVNKLED 242 (294)
Q Consensus 193 -----~~~~~A~~lG~AlQltniLRDi~~D~~~~~~g-R~-YLP~d~l~~~gv~~ed 242 (294)
....+-+..+...-|+|=|.......+ +| .+ -+-.=.|+++|++.++
T Consensus 317 v~~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~---~gg~~~N~V~~~mke~g~S~ee 370 (433)
T 3v1v_A 317 LHARPDMQRVIALAGNATTIVNDLYSYTKELN---SPGRHLNLPVVIAEREQLCERD 370 (433)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHSHHHHTT---SSSCCCCHHHHHHHHHTCCHHH
T ss_pred HHhCchHHHHHHHHHHHHHHhchHHHHHHHHh---cCCCCCcHHHHHHHhcCCCHHH
Confidence 112345667777778887888888777 64 43 4445567889998764
No 49
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=58.20 E-value=97 Score=27.22 Aligned_cols=199 Identities=9% Similarity=-0.130 Sum_probs=106.1
Q ss_pred HHHHHhcChhhhH---HHHHHHHHHhhhccccCCCCC-ChhhhHHHHHHHHHHHcccccccccCC-C-ccHHHHhhHHHH
Q 022601 52 ALVIQQLGTDLRN---AVCIFYLVLRALDTVEDDTSI-PTDVKVPILIAFHRHVYDREWHFSCGT-K-EYKVLMDQFHHV 125 (294)
Q Consensus 52 y~a~~llP~~~R~---a~~alYAf~R~~DdI~D~~~~-~~~~k~~~L~~w~~~l~~~~~~~~~g~-~-~~~~l~~al~~~ 125 (294)
.+++.+.|..... -+.-+.++.-.+||+-|.... +. ..++.+.+++.. ... |. | ...++...+..+
T Consensus 52 ~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~----ee~~~~~~~l~~---~~~-~~~p~~~~~~~~~l~d~ 123 (337)
T 1ps1_A 52 DLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENP----EDTKQLTDQVAA---ALD-GPLPDTAPPIAHGFADI 123 (337)
T ss_dssp HHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCH----HHHHHHHHHHHG---GGT-SCCCTTSCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCH----HHHHHHHHHHHH---HcC-CCCCCCCChHHHHHHHH
Confidence 4455666743333 455567788889999997531 22 234445555553 112 32 1 234566667777
Q ss_pred HHHHHhc-ChhHHHHHHHHHHHhhhHHHhhh----hhhcC-CHHHHHHHHHhhhhHHHHHHHHhhcccCCCCC-------
Q 022601 126 STAFLEL-GKGYQDAIEDITKRMGAGMAKFI----CKEVE-SIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL------- 192 (294)
Q Consensus 126 ~~~~~~~-~~~~~~li~~~~~~m~~g~~~Dl----~~~~~-t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~~------- 192 (294)
...+... .......+.+.+..+..++.... ...++ |++|...+-..+.|.--.+.+..++. |..-+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~-g~~l~~~~~~~p 202 (337)
T 1ps1_A 124 WRRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAG-RFEVPHRVFDSA 202 (337)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHH-TCCCCHHHHTSH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHc-CCCCCHHHHhCh
Confidence 6655433 22222333334445555655433 13577 88888777777776533333323322 22111
Q ss_pred ChhHHHHHHHHHHHHHHHHhchhhhhhcCCCCCc-cccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 022601 193 APDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRM-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCL 271 (294)
Q Consensus 193 ~~~~~A~~lG~AlQltniLRDi~~D~~~~~~gR~-YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~ 271 (294)
.....-...+...-|+|=|-....... +|.+ =.-.=.|+++|+|.++ ..+.+.++++.+.+.+.+..
T Consensus 203 ~~~~l~~~~~~i~rL~NDl~S~~kE~~---~G~~~n~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 203 VMSAMLQIAVDVNLLLNDIASLEKEEA---RGEQNNMVMILRREHGWSKSR---------SVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHH---TTCCCSHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHh---cCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 112455667778888888888888887 7763 3334567888998764 33344455555555444444
No 50
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=53.69 E-value=1.1e+02 Score=26.34 Aligned_cols=201 Identities=12% Similarity=-0.029 Sum_probs=101.4
Q ss_pred HHHHHhcChhhh---HHHHHHHHHHhhhccccCCCCCChhhhHHHHHHHHHHHcccccccccCCC-ccHHHHhhHHHHHH
Q 022601 52 ALVIQQLGTDLR---NAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTK-EYKVLMDQFHHVST 127 (294)
Q Consensus 52 y~a~~llP~~~R---~a~~alYAf~R~~DdI~D~~~~~~~~k~~~L~~w~~~l~~~~~~~~~g~~-~~~~l~~al~~~~~ 127 (294)
.++..+.|.... .-+.-+.++.-.+||+-|+.. .++.....+...+.+.+. ..| ...++..++..+..
T Consensus 48 ~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~~~--~~e~~~~~~~~~~~~~~~------~lp~~~~~~~~~l~d~~~ 119 (300)
T 1di1_A 48 EVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMS--FADGEAYNNRLIPISRGD------VLPDRTKPEEFILYDLWE 119 (300)
T ss_dssp HHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHTS------SCCCTTCHHHHHHHHHHH
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHhccccCC--HHHHHHHHHHHHHHccCC------CCCCCccHHHHHHHHHHH
Confidence 344556674332 345567788888999999843 222111112111112121 111 12355556666655
Q ss_pred HHHhcChhHHHHHHHHHHHhhhHHH--hhh-hhhcCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCCC-----ChhHHHH
Q 022601 128 AFLELGKGYQDAIEDITKRMGAGMA--KFI-CKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-----APDSLSN 199 (294)
Q Consensus 128 ~~~~~~~~~~~li~~~~~~m~~g~~--~Dl-~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~~-----~~~~~A~ 199 (294)
.+....+. +.+++++.+..++. .+. ...++|++|...+-..+.|.--.+.+..++- |..-+ .....-+
T Consensus 120 ~~~~~~~~---~~~~~~~~~~~~~~ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~ 195 (300)
T 1di1_A 120 SMRAHDAE---LANEVLEPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSM-GLRLSADELQDMKALEA 195 (300)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHTTHHHHH
T ss_pred HHHhhChH---HHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Confidence 44322112 22233333334442 122 2458898888887777776432222222222 22111 1234556
Q ss_pred HHHHHHHHHHHHhchhhhhhcCCCCCc---------cccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 022601 200 SMGLFLQKTNIIRDYLEDINEIPKCRM---------FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (294)
Q Consensus 200 ~lG~AlQltniLRDi~~D~~~~~~gR~---------YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A 270 (294)
..+...-|+|=|-....... +|-. -.-.=.|+++|+|.++ ..+.+..+++.+.+.+.+.
T Consensus 196 ~~~~~~~l~NDl~S~~kE~~---~g~~~h~~~~~~~n~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~~ 263 (300)
T 1di1_A 196 NCAKQLSVVNDIYSYDKEEE---ASRTGHKEGAFLCSAVKVLAEESKLGIPA---------TKRVLWSMTREWETVHDEI 263 (300)
T ss_dssp HHHHHHHHHHHHHHTTTTCC---C----------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHH---hhccccccccccchhHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 66777777776666666666 6651 2334467888888764 4455666666666666666
Q ss_pred HHHHhh
Q 022601 271 LKYMSA 276 (294)
Q Consensus 271 ~~~~~~ 276 (294)
.+-+..
T Consensus 264 ~~~l~~ 269 (300)
T 1di1_A 264 VAEKIA 269 (300)
T ss_dssp HHHHHS
T ss_pred HHHHhh
Confidence 543333
No 51
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=51.90 E-value=1.2e+02 Score=26.38 Aligned_cols=195 Identities=13% Similarity=0.015 Sum_probs=95.0
Q ss_pred HHHHHhcChh---hhHHHHHHHHHHhhhccccCCCCCChhhhH--HHHHHHHHHHcccccccccCCCccHHHHhhHHHHH
Q 022601 52 ALVIQQLGTD---LRNAVCIFYLVLRALDTVEDDTSIPTDVKV--PILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVS 126 (294)
Q Consensus 52 y~a~~llP~~---~R~a~~alYAf~R~~DdI~D~~~~~~~~k~--~~L~~w~~~l~~~~~~~~~g~~~~~~l~~al~~~~ 126 (294)
.+++.+.|.. ...-+.-+.++.-.+||+-|+.+ ..+.+. ..+..|-. +. . -.....|+..++..+.
T Consensus 62 ~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~-~~e~~~~~~~l~~~~~---~~----~-~p~~~~~~~~al~d~~ 132 (320)
T 3bny_A 62 RVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMS-FEEGSAYNEKLIPISR---GD----V-LPDRSIPVEYIIYDLW 132 (320)
T ss_dssp HHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH---TS----S-CCCTTSHHHHHHHHHH
T ss_pred hhHhhhCCCCCHHHHHHHHHHHHHHHHhhcccccCC-hhhHHHHHHHHHHHhc---CC----C-CCCCcCHHHHHHHHHH
Confidence 3455566743 33355777888889999999843 122111 12223321 11 0 0112245656666665
Q ss_pred HHHHhcChhHHHHHHHHHHHhhhHHH--hhh-hhhcCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCCC-Ch----hHHH
Q 022601 127 TAFLELGKGYQDAIEDITKRMGAGMA--KFI-CKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-AP----DSLS 198 (294)
Q Consensus 127 ~~~~~~~~~~~~li~~~~~~m~~g~~--~Dl-~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~~-~~----~~~A 198 (294)
..+....+ .+.+++++.+...+. .+. ...++|++|...+-..+.|.--.+.+..++. |..-+ +. ...-
T Consensus 133 ~e~~~~~~---~~~~~~~~~~~~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~ 208 (320)
T 3bny_A 133 ESMRAHDR---EMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSM-GLKLSPSELQRVREID 208 (320)
T ss_dssp HHHHHHHH---HHHHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHHTHHHH
T ss_pred HHHHhhCH---HHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Confidence 54432211 222222222222221 111 1358898888877777777432222222222 22211 11 3455
Q ss_pred HHHHHHHHHHHHHhchhhhhhcCCCCC---------ccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 022601 199 NSMGLFLQKTNIIRDYLEDINEIPKCR---------MFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVED 269 (294)
Q Consensus 199 ~~lG~AlQltniLRDi~~D~~~~~~gR---------~YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~ 269 (294)
...+...-|+|=|-....... +|. .=.-.=.|+++|+|.++ ..+.+..+++...+.+.+
T Consensus 209 ~~~~~~~~L~NDl~S~~kE~~---~g~~~~~~~~~~~N~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~ 276 (320)
T 3bny_A 209 ANCSKHLSVVNDIYSYEKELY---TSKTAHSEGGILCTSVQILAQEADVTAEA---------AKRVLFVMCREWELRHQL 276 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--------------CCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHH---hhcccccccccccchHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 566777777776767776766 664 22334467888988764 334444555555554444
Q ss_pred HH
Q 022601 270 CL 271 (294)
Q Consensus 270 A~ 271 (294)
..
T Consensus 277 l~ 278 (320)
T 3bny_A 277 LV 278 (320)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 52
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=51.84 E-value=1.7e+02 Score=28.19 Aligned_cols=187 Identities=11% Similarity=0.076 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhhhccccCCCCCChhhhHHHHHHHHHHHcccccccc-cCCCcc--HHHHhhHHHHHHHHHhc-----Ch
Q 022601 63 RNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS-CGTKEY--KVLMDQFHHVSTAFLEL-----GK 134 (294)
Q Consensus 63 R~a~~alYAf~R~~DdI~D~~~~~~~~k~~~L~~w~~~l~~~~~~~~-~g~~~~--~~l~~al~~~~~~~~~~-----~~ 134 (294)
|-.+.=+-++.-.+||+-|.... .+ .++.+.+++.. |... .+..+. .++..++..+......- ..
T Consensus 288 Rl~~aK~~~l~tviDD~yD~~gt-~e----El~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~ 360 (549)
T 1n1b_A 288 RKMAATIIVLATVIDDIYDVYGT-LD----ELELFTDTFKR--WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF 360 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC-HH----HHHHHHHHHHH--TCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCC-HH----HHHHHHHHHHh--cCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 44455556677778999988643 22 34445555532 1111 011122 34555565555443311 00
Q ss_pred hHHHHHHHHHHHhhhHHHh---hh-hhhcCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCC-CCh-h-------HHHHHH
Q 022601 135 GYQDAIEDITKRMGAGMAK---FI-CKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED-LAP-D-------SLSNSM 201 (294)
Q Consensus 135 ~~~~li~~~~~~m~~g~~~---Dl-~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~-~~~-~-------~~A~~l 201 (294)
.....+.+.+..++.++.. +. ....+|++|.......+.|.--.++...++- |... .+. . ...+..
T Consensus 361 ~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~-g~~lt~e~~~e~~~~~p~i~~~~ 439 (549)
T 1n1b_A 361 FCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTF-ANASHDTAVIDSLYQYHDILCLA 439 (549)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTS-TTCCCCHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHc-CCCCcHHHHHhhhcccHHHHHHH
Confidence 1112233333444445533 33 2457898888888777766544444444443 2221 222 2 233344
Q ss_pred HHHHHHHHHHhchhhhhhcCCCCCc--cccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 022601 202 GLFLQKTNIIRDYLEDINEIPKCRM--FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (294)
Q Consensus 202 G~AlQltniLRDi~~D~~~~~~gR~--YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A 270 (294)
+...-|.|=|........ +|.+ .+ .=.|.++|+|.++ ..+-++.+++.+.+.+.+.
T Consensus 440 ~~i~RL~NDi~S~~~E~~---rG~v~n~V-~cyMke~g~s~ee---------A~~~i~~~i~~~wk~ln~e 497 (549)
T 1n1b_A 440 GIILRLPDDLGTSYFELA---RGDVPKTI-QCYMKETNASEEE---------AVEHVKFLIREAWKDMNTA 497 (549)
T ss_dssp HHHHHHHHHHC------------CCCCHH-HHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhc---cCCccHHH-HHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555 6764 12 2357888988764 4456677777777766654
No 53
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=51.73 E-value=27 Score=30.66 Aligned_cols=64 Identities=8% Similarity=0.023 Sum_probs=36.8
Q ss_pred HhhhHHHhhhh-hhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC---CChhHHHHHHHHHHHHHH
Q 022601 146 RMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTN 209 (294)
Q Consensus 146 ~m~~g~~~Dl~-~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~---~~~~~~A~~lG~AlQltn 209 (294)
.|..|...|+. ..-.+.+.++.-+++-.|.+..+.+.+-.. .|.+. .....++.++|.|+|+.|
T Consensus 152 ~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~D 220 (273)
T 3qkc_B 152 GIVEGQYHELGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLG 220 (273)
T ss_dssp THHHHHHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888884 222355555544355555666666554322 23222 124578889999999854
No 54
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=44.69 E-value=46 Score=29.47 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhhhHHHhhhhhhcCCHHHHHHHHHhhhhHHHHHHHHhhcc-cCCCC--CChhHHHHHHHHHHHHHHHH
Q 022601 135 GYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED--LAPDSLSNSMGLFLQKTNII 211 (294)
Q Consensus 135 ~~~~li~~~~~~m~~g~~~Dl~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~-~~~~~--~~~~~~A~~lG~AlQltniL 211 (294)
...+.+.+.+..|..|...|+...... -+++-.|++..+.+.+-.. +|.+. .....++.++|.|+|+.|=+
T Consensus 133 ~~~~~ls~~~~~~~~GQ~lDl~~~~~~------~i~~KTg~Lf~~a~~lGa~lag~~~~~~~l~~~G~~lGlAFQI~DDi 206 (285)
T 4fp4_A 133 DVVTYLADVAQRLSVGQALDLEGERDK------AAEFKTAPLIEAALVMPLVILGRRELIETAKKLGTKLGILYQYSDDY 206 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHH------HHHHHTHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHhHHHHHhccccc------hhhcCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455567778888888422111 3344444444544443221 12221 12457889999999998766
Q ss_pred hchh
Q 022601 212 RDYL 215 (294)
Q Consensus 212 RDi~ 215 (294)
.|+-
T Consensus 207 LD~~ 210 (285)
T 4fp4_A 207 SDEN 210 (285)
T ss_dssp ----
T ss_pred hccC
Confidence 6654
No 55
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=43.18 E-value=9.7 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=19.1
Q ss_pred CCCccccHHHHHhcCCChhhh
Q 022601 223 KCRMFWPREIWSKYVNKLEDL 243 (294)
Q Consensus 223 ~gR~YLP~d~l~~~gv~~edl 243 (294)
+||+.||.++.++.|+.+.|-
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~ 41 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDA 41 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCE
T ss_pred CCEEEeCHHHHHHcCCCCCCE
Confidence 799999999999999998764
No 56
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=38.27 E-value=15 Score=23.72 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.0
Q ss_pred CCCccccHHHHHhcCCChhhh
Q 022601 223 KCRMFWPREIWSKYVNKLEDL 243 (294)
Q Consensus 223 ~gR~YLP~d~l~~~gv~~edl 243 (294)
+|++.||.++.++.|+...|-
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd~ 31 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGDL 31 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTCE
T ss_pred CCEEEeCHHHHHHcCcCCCCE
Confidence 799999999999999998763
No 57
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=31.20 E-value=3.7e+02 Score=25.98 Aligned_cols=195 Identities=8% Similarity=0.079 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHhhhccccCCCCCChhhhHHHHHHHHHHHcccccccc-cC-CCc-cHHHHhhHHHHHHHHHhcC--h---
Q 022601 63 RNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS-CG-TKE-YKVLMDQFHHVSTAFLELG--K--- 134 (294)
Q Consensus 63 R~a~~alYAf~R~~DdI~D~~~~~~~~k~~~L~~w~~~l~~~~~~~~-~g-~~~-~~~l~~al~~~~~~~~~~~--~--- 134 (294)
|-.+.=+-++.-.+||+-|... +.+ .++.+.+++.. |... .+ -|. -.++..++..+...+..-. .
T Consensus 309 Rl~~aK~~~litviDD~fD~yg-T~e----El~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~ 381 (569)
T 2j5c_A 309 RIMLTKINALVTTIDDVFDIYG-TLE----ELQLFTTAIQR--WDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGF 381 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-CHH----HHHHHHHHHHH--TSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhccCC-CHH----HHHHHHHHHHH--cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3333335667777999999864 332 24445555432 1111 01 121 2345555655554433110 0
Q ss_pred hHHHHHHHHHHHhhhHHHh---hh-hhhcCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCC-CChh-------HHHHHHH
Q 022601 135 GYQDAIEDITKRMGAGMAK---FI-CKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED-LAPD-------SLSNSMG 202 (294)
Q Consensus 135 ~~~~li~~~~~~m~~g~~~---Dl-~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~-~~~~-------~~A~~lG 202 (294)
.....+.+.++.++.++.. +. ....+|++|.......+.|.--.++...++- |... .++. ...+..+
T Consensus 382 ~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~-g~~lt~e~~e~l~~~p~i~~~~~ 460 (569)
T 2j5c_A 382 DSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRL-TDSIEEEAAESMHKYHDIVRASC 460 (569)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHS-CSSCCHHHHHHHTTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHc-CCCCCHHHHHHhhccHHHHHHHH
Confidence 1112233333444445543 33 2357898888777777766544444444432 2211 1111 2333334
Q ss_pred HHHHHHHHHhchhhhhhcCCCCCc--cccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022601 203 LFLQKTNIIRDYLEDINEIPKCRM--FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (294)
Q Consensus 203 ~AlQltniLRDi~~D~~~~~~gR~--YLP~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~ 279 (294)
...-|.|=|.....+.. +|-+ .+ .=.|.++|++.++ ..+-+..+++.+.+.+.+..-- ..+|.
T Consensus 461 ~i~RL~NDI~S~~~E~~---rG~v~s~V-~cyMke~g~s~ee---------A~~~i~~~ie~~wk~ln~e~l~-~~vp~ 525 (569)
T 2j5c_A 461 TILRLADDMGTSLDEVE---RGDVPKSV-QCYMNEKNASEEE---------AREHVRSLIDQTWKMMNKEMMT-SSFSK 525 (569)
T ss_dssp HHHHHHHHHHC-------------CCHH-HHC------CCHH---------HHHHHHHHHHHHHHHHHHHHHH-CCSCH
T ss_pred HHHHHhcccchhhhhcc---cCCccHHH-HHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHhc-cCCCH
Confidence 43444454444445555 5553 12 2346677877653 3445566666666655543211 44554
No 58
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=29.48 E-value=83 Score=25.96 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=32.8
Q ss_pred HHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 022601 231 EIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCL 271 (294)
Q Consensus 231 d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~~A~ 271 (294)
+.++..|++.+++.+.+.+|.....++.+...+...+..+.
T Consensus 91 ~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~~~~~~~ 131 (214)
T 2qzc_A 91 KLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLDWNKFL 131 (214)
T ss_dssp HHHHHTTCCHHHHHHSCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHcCCCHHHHhhCCCChHHHHHHHHHHHHHhcCHHHHH
Confidence 45688999999999999999999999999888755444333
No 59
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=24.38 E-value=1.1e+02 Score=25.33 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=30.1
Q ss_pred HHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH
Q 022601 231 EIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265 (294)
Q Consensus 231 d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~ 265 (294)
+.++..|++.+++.+.+.+|.....+..+...+..
T Consensus 89 ~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~ 123 (226)
T 1udd_A 89 KLLKELDLTLEDAIKTEPTLVNSAYMDFMLATAYK 123 (226)
T ss_dssp HHHHHTTCCHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHhhCCCCHHHHHHHHHHHHHHhc
Confidence 45688999999999989999999999999888754
No 60
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=24.30 E-value=29 Score=27.22 Aligned_cols=40 Identities=5% Similarity=-0.108 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhhhh
Q 022601 250 DKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIP 289 (294)
Q Consensus 250 ~~~~~~i~~~~~~A~~~l~~A~~~~~~lp~~~~~~~c~~p 289 (294)
|.+|.+++.+...-...-...+-+....|.+|++..|.|.
T Consensus 84 P~iR~L~K~~~~~~g~~kgns~yLy~LFP~GPaKqa~KIA 123 (132)
T 1yx3_A 84 PAVRVLTKAVGKKLGKEKGNSKYLYSLFPYGPAKQACRFA 123 (132)
T ss_dssp CCHHHHHHHHHHHHSSSCCCHHHHHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCcccchHHHHHHHCCCCHHHHHHHHh
Confidence 3355555555333210001122345668999999999885
No 61
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=24.19 E-value=4.9e+02 Score=25.09 Aligned_cols=186 Identities=12% Similarity=0.070 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHhhhccccCCCCCChhhhHHHHHHHHHHHcccccccc--cCCCcc-HHHHhhHHHHHHHHHh--cCh---
Q 022601 63 RNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS--CGTKEY-KVLMDQFHHVSTAFLE--LGK--- 134 (294)
Q Consensus 63 R~a~~alYAf~R~~DdI~D~~~~~~~~k~~~L~~w~~~l~~~~~~~~--~g~~~~-~~l~~al~~~~~~~~~--~~~--- 134 (294)
|-.+.=+-++.-.+||+=|... +.+ -|+.+.+++.. |... ..-|.. .++..++..+...... ...
T Consensus 291 R~~~aK~~~l~tviDD~yD~yg-t~e----El~~ft~ai~R--WD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~ 363 (555)
T 3n0f_A 291 RNSVAKMFSFVTIIDDIYDVYG-TLD----ELELFTDAVER--WDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGE 363 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-CHH----HHHHHHHHHHH--TCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhccccC-CHH----HHHHHHHHHHh--cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6666677788888999999764 332 34444444432 1111 012211 2344455554443321 100
Q ss_pred hHHHHHHHHHHHhhhHHHhhh----hhhcCCHHHHHHHHHhhhhHHHHHHHHhhcccCCCC-CChh-------HHHHHHH
Q 022601 135 GYQDAIEDITKRMGAGMAKFI----CKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED-LAPD-------SLSNSMG 202 (294)
Q Consensus 135 ~~~~li~~~~~~m~~g~~~Dl----~~~~~t~~dL~~Y~~~vAg~Vg~l~~~ll~~~~~~~-~~~~-------~~A~~lG 202 (294)
.....+.+.+..++.++.... ....+|++|......-+.|.--.++...++- |... .+.. ...+..+
T Consensus 364 ~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m-g~~lt~e~~e~~~~~p~i~~~~~ 442 (555)
T 3n0f_A 364 NILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV-VQNIKKEEIENLQKYHDIISRPS 442 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH-CSSCCHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc-CCCCCHHHHHhcccchHHHHHHH
Confidence 111223333444555554333 2358898888887777666533333333431 2111 1121 2333444
Q ss_pred HHHHHHHHHhchhhhhhcCCCCCcccc-HHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHH
Q 022601 203 LFLQKTNIIRDYLEDINEIPKCRMFWP-REIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVE 268 (294)
Q Consensus 203 ~AlQltniLRDi~~D~~~~~~gR~YLP-~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~~l~ 268 (294)
.-.-|.|=|........ +|-+-=- .=.|.++|+|.++ ..+-+..+++.+.+-+.
T Consensus 443 ~i~RL~NDi~S~~~E~~---rG~vas~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN 497 (555)
T 3n0f_A 443 HIFRLCNDLASASAEIA---RGETANSVSCYMRTKGISEEL---------ATESVMNLIDETWKKMN 497 (555)
T ss_dssp HHHHHHHHHHHHHHHHT---TTCCCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhhhhhh---cCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHH
Confidence 44445555555555555 6754111 2257788998874 34455666666655444
No 62
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=23.99 E-value=1.2e+02 Score=25.18 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=30.2
Q ss_pred HHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH
Q 022601 231 EIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265 (294)
Q Consensus 231 d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~ 265 (294)
+.++..|++.+++.+.+.+|.....+..+...+..
T Consensus 96 ~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~ 130 (221)
T 2gm8_A 96 ALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCAL 130 (221)
T ss_dssp HHHHHTTCCHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHhhCCCChHHHHHHHHHHHHHhc
Confidence 45688999999999989999999999999887754
No 63
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=21.74 E-value=1.1e+02 Score=25.49 Aligned_cols=36 Identities=6% Similarity=-0.018 Sum_probs=31.2
Q ss_pred HHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH
Q 022601 230 REIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265 (294)
Q Consensus 230 ~d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~ 265 (294)
.+.++..|++.+++.+.+.+|.....++.+...+..
T Consensus 91 ~~~~~~~Gi~~~~~~~~~~~p~~~aY~~~l~~~a~~ 126 (221)
T 3ibx_A 91 NHYIRELQITQKELQNACPTLANKSYTSYMLAEGFK 126 (221)
T ss_dssp HHHHHHTTCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHhhccCCHHHHHHHHHHHHHHhc
Confidence 346788999999999999999999999999888765
No 64
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=21.10 E-value=1.4e+02 Score=24.84 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=30.9
Q ss_pred HHHHHhcCCChhhh-hcccCCHHHHHHHHHHHHHHHH
Q 022601 230 REIWSKYVNKLEDL-KYEENSDKAVQCLNDMVTNALM 265 (294)
Q Consensus 230 ~d~l~~~gv~~edl-~~~~~~~~~~~~i~~~~~~A~~ 265 (294)
.+.++..|++.+++ .+.+.+|.....++++...+..
T Consensus 87 ~~~~~~~gi~~~~~~~~~~~~p~~~aY~~~l~~~a~~ 123 (229)
T 4fn6_A 87 DILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQAHS 123 (229)
T ss_dssp HHHHHHHTSCHHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHhhhcCCCHHHHHHHHHHHHHHhh
Confidence 44577899999999 8888899999999999888876
No 65
>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=20.60 E-value=1.5e+02 Score=24.44 Aligned_cols=35 Identities=6% Similarity=-0.113 Sum_probs=30.2
Q ss_pred HHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH
Q 022601 231 EIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265 (294)
Q Consensus 231 d~l~~~gv~~edl~~~~~~~~~~~~i~~~~~~A~~ 265 (294)
..++.+|++.+++.+.+.++.....++.+...+..
T Consensus 101 ~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~ 135 (225)
T 1z72_A 101 KAFKELKVAENDYLEVTLHPVTKAFQDLMYSAVAS 135 (225)
T ss_dssp HHHHHTTCCTHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHhhcCCCHHHHHHHHHHHHHHcc
Confidence 35688999999999999999999999999887754
Done!