Query 022604
Match_columns 294
No_of_seqs 222 out of 1182
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:10:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 3.1E-44 1E-48 303.4 7.0 123 5-127 4-130 (134)
2 2crr_A Stromal membrane-associ 100.0 1.3E-43 4.4E-48 301.9 7.2 122 7-128 8-133 (141)
3 2olm_A Nucleoporin-like protei 100.0 2.5E-42 8.5E-47 293.6 10.0 120 7-127 4-130 (140)
4 3lju_X ARF-GAP with dual PH do 100.0 1E-37 3.6E-42 299.3 9.8 120 7-127 13-139 (386)
5 3jue_A Arfgap with coiled-coil 100.0 5.8E-38 2E-42 297.5 7.8 118 10-127 27-152 (368)
6 2owa_A Arfgap-like finger doma 100.0 3.6E-37 1.2E-41 261.5 7.3 115 4-121 15-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 5E-37 1.7E-41 263.6 4.4 93 12-104 13-106 (149)
8 3dwd_A ADP-ribosylation factor 100.0 8.8E-36 3E-40 255.3 9.0 114 11-124 21-145 (147)
9 2p57_A GTPase-activating prote 100.0 1.7E-34 5.8E-39 246.7 7.0 89 13-101 22-111 (144)
10 3sub_A ADP-ribosylation factor 100.0 2E-34 6.9E-39 250.3 5.8 110 11-120 4-115 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 2.9E-33 9.8E-38 255.4 9.7 120 6-125 20-147 (301)
12 3lvq_E ARF-GAP with SH3 domain 100.0 1.7E-33 6E-38 271.5 6.6 119 8-126 3-129 (497)
13 1dcq_A PYK2-associated protein 100.0 1E-32 3.4E-37 248.7 8.2 114 13-126 2-123 (278)
14 3o47_A ADP-ribosylation factor 100.0 6.3E-31 2.2E-35 244.6 7.4 92 10-101 19-110 (329)
15 1u5k_A Hypothetical protein; O 87.5 0.32 1.1E-05 42.9 3.1 77 25-118 147-223 (244)
16 1gnf_A Transcription factor GA 68.6 1.4 4.9E-05 30.5 0.8 38 26-63 2-40 (46)
17 1tjl_A DNAK suppressor protein 63.5 1.9 6.4E-05 36.5 0.6 35 25-59 108-143 (151)
18 3dfx_A Trans-acting T-cell-spe 63.0 2.3 7.8E-05 31.4 0.9 39 25-63 4-43 (63)
19 2vut_I AREA, nitrogen regulato 60.5 2.5 8.6E-05 28.8 0.7 35 29-63 2-37 (43)
20 4gat_A Nitrogen regulatory pro 57.9 3.2 0.00011 30.8 1.0 38 26-63 7-45 (66)
21 4hc9_A Trans-acting T-cell-spe 55.4 3.1 0.00011 33.7 0.6 36 28-63 5-41 (115)
22 2kgo_A Uncharacterized protein 51.4 1.6 5.6E-05 35.3 -1.7 34 27-60 55-89 (108)
23 2kae_A GATA-type transcription 40.9 4.2 0.00014 30.6 -0.7 36 27-63 7-45 (71)
24 1d4u_A Nucleotide excision rep 39.2 3.3 0.00011 33.6 -1.7 32 27-58 4-36 (111)
25 3g9m_A Glucocorticoid receptor 33.4 8.5 0.00029 29.6 -0.1 30 27-59 1-30 (90)
26 1ffk_W Ribosomal protein L37AE 29.7 16 0.00053 27.6 0.8 40 15-56 13-53 (73)
27 2nll_B Protein (thyroid hormon 29.0 14 0.00047 29.2 0.4 29 29-60 2-30 (103)
28 2kq9_A DNAK suppressor protein 28.3 4 0.00014 32.6 -2.9 32 25-56 78-110 (112)
29 3dzy_D Peroxisome proliferator 27.3 17 0.0006 34.6 0.9 32 26-60 48-79 (419)
30 4hc9_A Trans-acting T-cell-spe 26.9 21 0.00073 28.7 1.2 38 26-63 57-95 (115)
31 2ebl_A COUP transcription fact 26.6 19 0.00066 27.7 0.9 32 26-60 5-36 (89)
32 2han_B Ecdysone receptor; tran 24.7 17 0.00059 29.4 0.3 31 27-60 7-37 (119)
33 1r4i_A Androgen receptor; AR, 24.4 16 0.00055 29.0 0.0 33 25-60 4-36 (105)
34 1dsz_A RAR-alpha, retinoic aci 23.8 20 0.00068 27.4 0.5 29 29-60 5-33 (86)
35 1hcq_A Protein (estrogen recep 23.1 19 0.00064 27.4 0.2 31 27-60 3-33 (84)
36 1kb2_A Vitamin D3 receptor; VD 23.1 19 0.00067 28.7 0.3 30 28-60 6-35 (110)
37 3j21_d 50S ribosomal protein L 22.0 33 0.0011 26.8 1.4 29 27-56 32-77 (89)
38 2han_A Protein ultraspiracle; 21.1 19 0.00066 27.9 -0.1 31 27-60 9-39 (93)
39 2p1l_B Beclin 1; apoptosis, au 20.3 23 0.00078 22.6 0.1 13 255-267 11-23 (31)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.1e-44 Score=303.42 Aligned_cols=123 Identities=47% Similarity=0.889 Sum_probs=108.0
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHH
Q 022604 5 ANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVI 84 (294)
Q Consensus 5 ~~~sk~l~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m 84 (294)
+..|++.+++++++|+.|++.|+|+.|||||+++|+|+|+|||||||+.||||||+||+|||+||||+||+|++++|++|
T Consensus 4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m 83 (134)
T 2iqj_A 4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM 83 (134)
T ss_dssp ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccHHHHHHHhhcCCCCCC----hHHHHHHHHHhhhcCccccCCC
Q 022604 85 QSMGNEKSNSYWEAELPPNYD----RVGIENFIRAKYEEKRWIPRGG 127 (294)
Q Consensus 85 ~~~GN~~aN~~wEa~lPp~~d----~~~~e~FIraKY~~k~F~~~~~ 127 (294)
+.+||..+|.|||+++|+.+. ...+++|||+||++++|+.+..
T Consensus 84 ~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 130 (134)
T 2iqj_A 84 QEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL 130 (134)
T ss_dssp HTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred HHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence 999999999999999986542 3568999999999999997654
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=301.86 Aligned_cols=122 Identities=50% Similarity=0.964 Sum_probs=113.0
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHHh
Q 022604 7 VSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQS 86 (294)
Q Consensus 7 ~sk~l~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~~ 86 (294)
..++++++++++|+.|++.|+|+.|||||+++|+|||+|||||||+.|+||||.||+|||+||||+||+|++++|++|+.
T Consensus 8 ~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~ 87 (141)
T 2crr_A 8 KAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQD 87 (141)
T ss_dssp CTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHhhcCCCCCC----hHHHHHHHHHhhhcCccccCCCC
Q 022604 87 MGNEKSNSYWEAELPPNYD----RVGIENFIRAKYEEKRWIPRGGN 128 (294)
Q Consensus 87 ~GN~~aN~~wEa~lPp~~d----~~~~e~FIraKY~~k~F~~~~~~ 128 (294)
+||..+|+|||+++|+.+. ...+++|||+||++++|+.+...
T Consensus 88 ~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~~ 133 (141)
T 2crr_A 88 MGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAI 133 (141)
T ss_dssp THHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGGG
T ss_pred HccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCcc
Confidence 9999999999999987542 34689999999999999976543
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=2.5e-42 Score=293.62 Aligned_cols=120 Identities=31% Similarity=0.666 Sum_probs=109.9
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHHh
Q 022604 7 VSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQS 86 (294)
Q Consensus 7 ~sk~l~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~~ 86 (294)
.+++++++++++|+.|++.|+|+.|||||+++|+|+|+|||||||+.||||||+||+| |+||||+||+|++++|++|+.
T Consensus 4 ~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 4 AKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred hccHHHHHHHhhcCCC-------CCChHHHHHHHHHhhhcCccccCCC
Q 022604 87 MGNEKSNSYWEAELPP-------NYDRVGIENFIRAKYEEKRWIPRGG 127 (294)
Q Consensus 87 ~GN~~aN~~wEa~lPp-------~~d~~~~e~FIraKY~~k~F~~~~~ 127 (294)
+||..+|.|||+++++ ..|...+++||++||++++|+.+..
T Consensus 83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~~ 130 (140)
T 2olm_A 83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPE 130 (140)
T ss_dssp CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence 9999999999998753 2245578899999999999997643
No 4
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=1e-37 Score=299.26 Aligned_cols=120 Identities=41% Similarity=0.743 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHHh
Q 022604 7 VSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQS 86 (294)
Q Consensus 7 ~sk~l~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~~ 86 (294)
-+++++++++++|++|++.|+|+.|||||+++|+|||+|||||||+.||||||+| +|||+||||+||.|++++|++|+.
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~ 91 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS 91 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hccHHHHHHHhhcCCCCC------C-hHHHHHHHHHhhhcCccccCCC
Q 022604 87 MGNEKSNSYWEAELPPNY------D-RVGIENFIRAKYEEKRWIPRGG 127 (294)
Q Consensus 87 ~GN~~aN~~wEa~lPp~~------d-~~~~e~FIraKY~~k~F~~~~~ 127 (294)
+||..+|+|||+++|+.. | ...+++|||+||++++|+.++.
T Consensus 92 ~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 92 HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp SSHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred hcchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999987532 2 3457899999999999997765
No 5
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=5.8e-38 Score=297.48 Aligned_cols=118 Identities=42% Similarity=0.753 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhcc
Q 022604 10 ELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGN 89 (294)
Q Consensus 10 ~l~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~~~GN 89 (294)
+.+++++++|+.|++.|+|+.|||||+++|+|||+|||||||++||||||+||+|||+||||+||.|++++|++|+.+||
T Consensus 27 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn 106 (368)
T 3jue_A 27 REPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGN 106 (368)
T ss_dssp -----CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCH
T ss_pred hhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHcc
Confidence 34455889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC--------CChHHHHHHHHHhhhcCccccCCC
Q 022604 90 EKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRGG 127 (294)
Q Consensus 90 ~~aN~~wEa~lPp~--------~d~~~~e~FIraKY~~k~F~~~~~ 127 (294)
..+|.|||+.+|+. .+...+++||++||++++|+.+..
T Consensus 107 ~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 107 VIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred HHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 99999999998642 234578999999999999997654
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.6e-37 Score=261.52 Aligned_cols=115 Identities=32% Similarity=0.602 Sum_probs=100.8
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHH
Q 022604 4 KANVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAV 83 (294)
Q Consensus 4 ~~~~sk~l~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~ 83 (294)
+..++++ ..+++|+.|++.|+|+.|||||+++|+|+|+|||||||+.||||||+||+|||+||||+||+|++++|++
T Consensus 15 ~~~~~~~---~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~ 91 (138)
T 2owa_A 15 KGFVSDK---LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVR 91 (138)
T ss_dssp TSCBCHH---HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHH
T ss_pred CCCCCHH---HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHH
Confidence 3444543 4567888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccHHHHHHHhhcCC--CCC-ChHHHHHHHHHhhhcCc
Q 022604 84 IQSMGNEKSNSYWEAELP--PNY-DRVGIENFIRAKYEEKR 121 (294)
Q Consensus 84 m~~~GN~~aN~~wEa~lP--p~~-d~~~~e~FIraKY~~k~ 121 (294)
|+.+||.++|+|||++.. +.. .+...+.||..+|+++.
T Consensus 92 m~~~GN~~an~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 92 MDIGGNGRARNYFKQVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHCCHHHHHHHHHHHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 999999999999998443 222 24678899999999873
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=263.61 Aligned_cols=93 Identities=40% Similarity=0.753 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCC-CCHHHHHHHHhhccH
Q 022604 12 NAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMGNE 90 (294)
Q Consensus 12 ~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~-Wt~eeV~~m~~~GN~ 90 (294)
.++++++|+.|++.|+|+.|||||+++|+|+|+|||||||+.|+||||.||+|||+||||+||+ |++++|++|+.+||.
T Consensus 13 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~ 92 (149)
T 2crw_A 13 KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNA 92 (149)
T ss_dssp HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhH
Confidence 3577899999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhcCCCCC
Q 022604 91 KSNSYWEAELPPNY 104 (294)
Q Consensus 91 ~aN~~wEa~lPp~~ 104 (294)
++|+|||++.+...
T Consensus 93 ~an~~~e~~~~~~~ 106 (149)
T 2crw_A 93 SASSFFHQHGCSTN 106 (149)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred HHHHHHHhcCCCCc
Confidence 99999999987643
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.8e-36 Score=255.27 Aligned_cols=114 Identities=35% Similarity=0.659 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhccH
Q 022604 11 LNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNE 90 (294)
Q Consensus 11 l~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~~~GN~ 90 (294)
-+++++++|+.|++.|+|+.|||||+++|+|+|+|||||||++||||||.||+|||+||||+||+|++++|++|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcC--CCCCCh---------HHHHHHHHHhhhcCcccc
Q 022604 91 KSNSYWEAEL--PPNYDR---------VGIENFIRAKYEEKRWIP 124 (294)
Q Consensus 91 ~aN~~wEa~l--Pp~~d~---------~~~e~FIraKY~~k~F~~ 124 (294)
++|+|||++. .+..+. ...++-|.++++.+.|..
T Consensus 101 ~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 101 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 9999999874 222221 124677888888887754
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=246.70 Aligned_cols=89 Identities=39% Similarity=0.818 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCC-CCHHHHHHHHhhccHH
Q 022604 13 AKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMGNEK 91 (294)
Q Consensus 13 ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~-Wt~eeV~~m~~~GN~~ 91 (294)
++.+++|+.|++.|+|+.|||||+++|+|+|+|||||||+.||||||+||+|||+||||+||+ |++++|++|+.+||.+
T Consensus 22 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~ 101 (144)
T 2p57_A 22 TEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNAN 101 (144)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHH
Confidence 356789999999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred HHHHHhhcCC
Q 022604 92 SNSYWEAELP 101 (294)
Q Consensus 92 aN~~wEa~lP 101 (294)
+|+||+++.-
T Consensus 102 an~~~e~~g~ 111 (144)
T 2p57_A 102 ATAFFRQHGC 111 (144)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998753
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2e-34 Score=250.31 Aligned_cols=110 Identities=38% Similarity=0.652 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhcc
Q 022604 11 LNAKHRKILDGLLKL-PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGN 89 (294)
Q Consensus 11 l~ar~~kiL~~Ll~~-PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~~~GN 89 (294)
.++..+++|+.|++. |+|+.|||||+++|+|||++||||||+.||||||+||+|||+||||+||.|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 467889999999985 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCChH-HHHHHHHHhhhcC
Q 022604 90 EKSNSYWEAELPPNYDRV-GIENFIRAKYEEK 120 (294)
Q Consensus 90 ~~aN~~wEa~lPp~~d~~-~~e~FIraKY~~k 120 (294)
.++|.||+++.+...... ....-..++|+++
T Consensus 84 ~~an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~ 115 (163)
T 3sub_A 84 KKCQTYLENYGISDFIPERKYRTKAADHYRKI 115 (163)
T ss_dssp HHHHHHHHHTTCTTSCHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccChhhcCCCHHHHHHHHH
Confidence 999999999876554421 1222334445544
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.98 E-value=2.9e-33 Score=255.38 Aligned_cols=120 Identities=38% Similarity=0.667 Sum_probs=105.9
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHH
Q 022604 6 NVSKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQ 85 (294)
Q Consensus 6 ~~sk~l~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~ 85 (294)
..+.+.++..+++|+.|++.|+|+.|+|||+++|+|+|+|||+|||++|||+||.||+|||+|||++||.|++++|.+|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~ 99 (301)
T 2b0o_E 20 GHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99 (301)
T ss_dssp -------CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHH
Confidence 34566777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHhhcCCCC--------CChHHHHHHHHHhhhcCccccC
Q 022604 86 SMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPR 125 (294)
Q Consensus 86 ~~GN~~aN~~wEa~lPp~--------~d~~~~e~FIraKY~~k~F~~~ 125 (294)
.+||..+|.+||+.+|.. .+...++.||++||++++|..+
T Consensus 100 ~~GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 100 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HCCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HcCCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999988652 2356789999999999999764
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.98 E-value=1.7e-33 Score=271.54 Aligned_cols=119 Identities=38% Similarity=0.671 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHHhh
Q 022604 8 SKELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSM 87 (294)
Q Consensus 8 sk~l~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~~~ 87 (294)
+..+++.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++||||||+||+|||+||||+||.|+++++.+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~ 82 (497)
T 3lvq_E 3 DGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 82 (497)
T ss_dssp -----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTC
T ss_pred cchhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhhcCCCC--------CChHHHHHHHHHhhhcCccccCC
Q 022604 88 GNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRG 126 (294)
Q Consensus 88 GN~~aN~~wEa~lPp~--------~d~~~~e~FIraKY~~k~F~~~~ 126 (294)
||..+|.+||+.+|.. .+...+++||++||+++.|..+.
T Consensus 83 GN~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 83 GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp CHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hhHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 9999999999998642 23457899999999999998754
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.97 E-value=1e-32 Score=248.74 Aligned_cols=114 Identities=37% Similarity=0.712 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhccHHH
Q 022604 13 AKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKS 92 (294)
Q Consensus 13 ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~~~GN~~a 92 (294)
++++++|+.|++.|+|+.|+|||+.+|+|+|+|||+|||++|||+||.||+|||+|||++||.|+++++.+|..+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------CChHHHHHHHHHhhhcCccccCC
Q 022604 93 NSYWEAELPPN--------YDRVGIENFIRAKYEEKRWIPRG 126 (294)
Q Consensus 93 N~~wEa~lPp~--------~d~~~~e~FIraKY~~k~F~~~~ 126 (294)
|.|||+.+|.. .+...+++||++||+.++|....
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 99999988632 24567899999999999998654
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.3e-31 Score=244.56 Aligned_cols=92 Identities=39% Similarity=0.739 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhcc
Q 022604 10 ELNAKHRKILDGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGN 89 (294)
Q Consensus 10 ~l~ar~~kiL~~Ll~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~~~GN 89 (294)
..+.+++++|+.|++.|+|+.|||||+++|+|||+|||||||+.||||||.||+|||+||||+||+|++++|++|+.+||
T Consensus 19 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN 98 (329)
T 3o47_A 19 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 98 (329)
T ss_dssp ----CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCH
T ss_pred cCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 022604 90 EKSNSYWEAELP 101 (294)
Q Consensus 90 ~~aN~~wEa~lP 101 (294)
.++|+|||++..
T Consensus 99 ~~~n~~~e~~~~ 110 (329)
T 3o47_A 99 AKFREFLESQED 110 (329)
T ss_dssp HHHHHHHHTCSS
T ss_pred HHHHHHHHhcCC
Confidence 999999998753
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=87.48 E-value=0.32 Score=42.88 Aligned_cols=77 Identities=18% Similarity=0.438 Sum_probs=48.3
Q ss_pred CCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCccceeeecccCCCCHHHHHHHHhhccHHHHHHHhhcCCCCC
Q 022604 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY 104 (294)
Q Consensus 25 ~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRsLG~hISkVKSltLD~Wt~eeV~~m~~~GN~~aN~~wEa~lPp~~ 104 (294)
.|.=..|+.||.+...|.+...|.|+|..|...+ .++.+++..|+.+-......+..-.+++.
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~~~~~~~~~~~~- 209 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTVRASFEQPVPSA- 209 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCHHHHHHSCCCGG-
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCHHHHhhCCCCHH-
Confidence 3566799999998777899999999999985321 36788888887654443333333333221
Q ss_pred ChHHHHHHHHHhhh
Q 022604 105 DRVGIENFIRAKYE 118 (294)
Q Consensus 105 d~~~~e~FIraKY~ 118 (294)
.....+++++.=|.
T Consensus 210 ~~~~~~~ll~~~~~ 223 (244)
T 1u5k_A 210 DRPALWRALEKFVT 223 (244)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 22334455544333
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=68.63 E-value=1.4 Score=30.49 Aligned_cols=38 Identities=34% Similarity=0.790 Sum_probs=31.5
Q ss_pred CCCCCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 022604 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (294)
Q Consensus 26 PgNk~CADCga~-~P~WaSvn~GVFVC~~CSGIHRsLG~ 63 (294)
.....|++|+.. -|.|=.-.-|..||-.|.-.++..|+
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 356889999987 57899888899999999887777664
No 17
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=63.50 E-value=1.9 Score=36.52 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCCCCCCcCCCCCCCC-eeecchhHHHHHHhhhhhh
Q 022604 25 LPENRECADCKAKGPR-WASVNLGIFICMQCSGIHR 59 (294)
Q Consensus 25 ~PgNk~CADCga~~P~-WaSvn~GVFVC~~CSGIHR 59 (294)
...-.+|.+||.+=|. -.-.--|+-+|+.|...|-
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 4567899999997331 2222336778999998764
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=62.97 E-value=2.3 Score=31.36 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=32.2
Q ss_pred CCCCCCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 022604 25 LPENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (294)
Q Consensus 25 ~PgNk~CADCga~-~P~WaSvn~GVFVC~~CSGIHRsLG~ 63 (294)
......|++|+.. -|.|=.-..|-.||-.|.-..+..|+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 4567899999986 57999888999999999877776664
No 19
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=60.52 E-value=2.5 Score=28.82 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=29.0
Q ss_pred CCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 022604 29 RECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (294)
Q Consensus 29 k~CADCga~-~P~WaSvn~GVFVC~~CSGIHRsLG~ 63 (294)
+.|++|+.. -|.|=.-..|-.||-.|.-..+.-|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 479999987 57999998999999999877666553
No 20
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=57.94 E-value=3.2 Score=30.76 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=31.8
Q ss_pred CCCCCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 022604 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (294)
Q Consensus 26 PgNk~CADCga~-~P~WaSvn~GVFVC~~CSGIHRsLG~ 63 (294)
.....|++|+.. -|.|-.-.-|-.||-.|.-..+..|.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 456899999986 68999998999999999877776654
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=55.37 E-value=3.1 Score=33.74 Aligned_cols=36 Identities=33% Similarity=0.804 Sum_probs=29.1
Q ss_pred CCCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 022604 28 NRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (294)
Q Consensus 28 Nk~CADCga~-~P~WaSvn~GVFVC~~CSGIHRsLG~ 63 (294)
-+.|++||+. -|.|=.-.-|-+||-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 4789999986 68999888899999999876665443
No 22
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=51.36 E-value=1.6 Score=35.33 Aligned_cols=34 Identities=24% Similarity=0.521 Sum_probs=23.1
Q ss_pred CCCCCcCCCCCCC-CeeecchhHHHHHHhhhhhhc
Q 022604 27 ENRECADCKAKGP-RWASVNLGIFICMQCSGIHRS 60 (294)
Q Consensus 27 gNk~CADCga~~P-~WaSvn~GVFVC~~CSGIHRs 60 (294)
...+|.+||.+=| .-.-.--++-+|+.|...+-.
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E~ 89 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 89 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHHH
Confidence 4679999999733 122233467789999987643
No 23
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=40.91 E-value=4.2 Score=30.58 Aligned_cols=36 Identities=22% Similarity=0.581 Sum_probs=28.4
Q ss_pred CCCCCcCCCCC-CCCeee--cchhHHHHHHhhhhhhcCCC
Q 022604 27 ENRECADCKAK-GPRWAS--VNLGIFICMQCSGIHRSLGV 63 (294)
Q Consensus 27 gNk~CADCga~-~P~WaS--vn~GVFVC~~CSGIHRsLG~ 63 (294)
....|++|+.. -|.|=. -.-| .||-.|.-.++..|+
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 45789999986 589988 6777 899999877777664
No 24
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=39.25 E-value=3.3 Score=33.63 Aligned_cols=32 Identities=13% Similarity=0.364 Sum_probs=24.3
Q ss_pred CCCCCcCCCCCCCC-eeecchhHHHHHHhhhhh
Q 022604 27 ENRECADCKAKGPR-WASVNLGIFICMQCSGIH 58 (294)
Q Consensus 27 gNk~CADCga~~P~-WaSvn~GVFVC~~CSGIH 58 (294)
+.-.|.+||...-. |..-+||+-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 45679999987433 345699999999998653
No 25
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=33.44 E-value=8.5 Score=29.59 Aligned_cols=30 Identities=17% Similarity=0.582 Sum_probs=24.5
Q ss_pred CCCCCcCCCCCCCCeeecchhHHHHHHhhhhhh
Q 022604 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (294)
Q Consensus 27 gNk~CADCga~~P~WaSvn~GVFVC~~CSGIHR 59 (294)
|+..|.=||.... ...||++.|..|.+.-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999998654 45899999999999876
No 26
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=29.70 E-value=16 Score=27.63 Aligned_cols=40 Identities=23% Similarity=0.437 Sum_probs=30.9
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhh
Q 022604 15 HRKILDGL-LKLPENRECADCKAKGPRWASVNLGIFICMQCSG 56 (294)
Q Consensus 15 ~~kiL~~L-l~~PgNk~CADCga~~P~WaSvn~GVFVC~~CSG 56 (294)
.++.+.++ ..+...-.|.-||.....+.. .||..|..|.-
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 45556666 678889999999988777765 58999999943
No 27
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=28.95 E-value=14 Score=29.24 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=23.8
Q ss_pred CCCcCCCCCCCCeeecchhHHHHHHhhhhhhc
Q 022604 29 RECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (294)
Q Consensus 29 k~CADCga~~P~WaSvn~GVFVC~~CSGIHRs 60 (294)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 56889997654 458999999999998874
No 28
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=28.25 E-value=4 Score=32.56 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=20.5
Q ss_pred CCCCCCCcCCCCCCCC-eeecchhHHHHHHhhh
Q 022604 25 LPENRECADCKAKGPR-WASVNLGIFICMQCSG 56 (294)
Q Consensus 25 ~PgNk~CADCga~~P~-WaSvn~GVFVC~~CSG 56 (294)
...-.+|.+||.+=|. -.-.--++-.|+.|..
T Consensus 78 ~g~yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 78 SGTFGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp HTCCSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred CCCcCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 4778899999987331 1112224667888865
No 29
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=27.32 E-value=17 Score=34.61 Aligned_cols=32 Identities=28% Similarity=0.625 Sum_probs=25.4
Q ss_pred CCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhc
Q 022604 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (294)
Q Consensus 26 PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRs 60 (294)
..+..|.=||...-. ..|||+.|..|.+..|-
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 346789999987654 48999999999998764
No 30
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.86 E-value=21 Score=28.70 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=31.9
Q ss_pred CCCCCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 022604 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (294)
Q Consensus 26 PgNk~CADCga~-~P~WaSvn~GVFVC~~CSGIHRsLG~ 63 (294)
.....|++|+.. -|.|=.-..|-.||-.|.-..+..|.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 456899999986 69999999998999999877776664
No 31
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=26.58 E-value=19 Score=27.69 Aligned_cols=32 Identities=25% Similarity=0.624 Sum_probs=26.3
Q ss_pred CCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhc
Q 022604 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (294)
Q Consensus 26 PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRs 60 (294)
+.+..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999998754 458999999999998874
No 32
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=24.73 E-value=17 Score=29.37 Aligned_cols=31 Identities=19% Similarity=0.591 Sum_probs=25.8
Q ss_pred CCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhc
Q 022604 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (294)
Q Consensus 27 gNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRs 60 (294)
....|.=||.... ...||++.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 4678999997653 569999999999998874
No 33
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=24.41 E-value=16 Score=29.02 Aligned_cols=33 Identities=18% Similarity=0.613 Sum_probs=25.8
Q ss_pred CCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhc
Q 022604 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (294)
Q Consensus 25 ~PgNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRs 60 (294)
.+....|.=||... ....||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35577899999754 3568999999999998874
No 34
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=23.81 E-value=20 Score=27.37 Aligned_cols=29 Identities=28% Similarity=0.734 Sum_probs=23.4
Q ss_pred CCCcCCCCCCCCeeecchhHHHHHHhhhhhhc
Q 022604 29 RECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (294)
Q Consensus 29 k~CADCga~~P~WaSvn~GVFVC~~CSGIHRs 60 (294)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46999997664 358999999999998874
No 35
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=23.15 E-value=19 Score=27.44 Aligned_cols=31 Identities=26% Similarity=0.687 Sum_probs=25.6
Q ss_pred CCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhc
Q 022604 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (294)
Q Consensus 27 gNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRs 60 (294)
+...|.=||.+.. ...||++.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 4578999997653 569999999999998874
No 36
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=23.05 E-value=19 Score=28.73 Aligned_cols=30 Identities=23% Similarity=0.667 Sum_probs=24.3
Q ss_pred CCCCcCCCCCCCCeeecchhHHHHHHhhhhhhc
Q 022604 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (294)
Q Consensus 28 Nk~CADCga~~P~WaSvn~GVFVC~~CSGIHRs 60 (294)
...|.=||.... ...||++.|..|.+..|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 6 PRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp -CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 467999997764 358999999999998874
No 37
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.96 E-value=33 Score=26.75 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=19.5
Q ss_pred CCCCCcCCCCC-------CCC----------eeecchhHHHHHHhhh
Q 022604 27 ENRECADCKAK-------GPR----------WASVNLGIFICMQCSG 56 (294)
Q Consensus 27 gNk~CADCga~-------~P~----------WaSvn~GVFVC~~CSG 56 (294)
.--.|+|||.+ -|. -++=.|| .+|..|--
T Consensus 32 ~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 32 KIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 33469999975 121 3455789 99999943
No 38
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=21.14 E-value=19 Score=27.87 Aligned_cols=31 Identities=19% Similarity=0.692 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhc
Q 022604 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (294)
Q Consensus 27 gNk~CADCga~~P~WaSvn~GVFVC~~CSGIHRs 60 (294)
....|.=||.... ...||++.|..|.+..|-
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 3578999998654 569999999999998864
No 39
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=20.30 E-value=23 Score=22.59 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=10.4
Q ss_pred ccchhhhhhhhhc
Q 022604 255 KVDYATDLFNLLC 267 (294)
Q Consensus 255 kvd~atdlf~~l~ 267 (294)
++.-+++||+.||
T Consensus 11 ~~~~~~~lFdILS 23 (31)
T 2p1l_B 11 RLKVTGDLFDIMS 23 (31)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 3456899999998
Done!