BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022605
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 9/155 (5%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+L+ A G+ V+DL+ G+DVN+ D DGRT LH AA EGH E+VKLL+SK A+++A+
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYELNP- 187
D G T A G+ E+ +L ++GA V RTP+ A +E+ + ++
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 188 LELQVRKADGITKGSYQVAKWNGTKVWVKILDKES 222
++ +DG T +A+ +G + VK+L+K+
Sbjct: 127 ADVNTSDSDGRT--PLDLAREHGNEEIVKLLEKQG 159
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L + A G + V+ L+++G+DVN+ D DGRT LH AA EGH E+VKLL+SK A+
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK---RTPMTVA 175
++A+D G T A G+ E+ +L ++GA V + RTP+ +A
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L + A G + V+ L+++G+DVN+ D DGRT LH AA EGH E+VKLL+SK A+
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
++ D G T A+ +GN E+ +L+ +G
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+L+ A G+ V+DL+ G+DVN+ D DGRT LH AA GH EVVKLL+SK A+++A+
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYELNP- 187
D G T A G+ EV +L ++GA V RTP+ A +EV + ++
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 188 LELQVRKADGITKGSYQVAKWNGTKVWVKILDKES 222
++ +DG T +A+ +G + VK+L+K+
Sbjct: 127 ADVNTSDSDGRT--PLDLAREHGNEEVVKLLEKQG 159
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L A G + V+ L+++G+DVN+ D DGRT LH AA GH EVVKLL+SK A+
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK---RTPMTVA 175
++A+D G T A G+ EV +L ++GA V + RTP+ +A
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA 143
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L A G + V+ L+++G+DVN+ D DGRT LH AA GH EVVKLL+SK A+
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
++ D G T A+ +GN EV +L+ +G
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R G ++ V+ LL G+DVN+ D +GRT LH+AA GH+EVVKLLL A+++A+D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
+ G T A G++EV +L GA V K RTP+ +A
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R G ++ V+ LL G+DVN+ D +GRT LH+AA GH+EVVKLLL A+++A+D
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
+ G T A G++EV +L GA
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
+GRT LH+AA GH+EVVKLLL A+++A+D+ G T A G++EV +L GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 164 V---PKTKRTPMTVA 175
V K RTP+ +A
Sbjct: 61 VNAKDKNGRTPLHLA 75
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+L+ A G+ V+DLL G+DVN+ D DG+T LH+AA GH EVVKLLLS+ A+ +A+
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA---NPREVPEYELNP 187
D G T A G+ EV +L ++GA P K +TP+ +A +EV + L+
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 188 -LELQVRKADGITKGSYQVAKWNGTKVWVKILDKES 222
+ +DG T +A+ +G + VK+L+K+
Sbjct: 126 GADPNTSDSDGRT--PLDLAREHGNEEVVKLLEKQG 159
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 5/109 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L A G + V+ LL++G+D N+ D DG+T LH+AA GH EVVKLLLS+ A+
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA 175
+A+D G T A G+ EV +L ++GA P T RTP+ +A
Sbjct: 96 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNTSDSDGRTPLDLA 143
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L A G + V+ LL++G+D N+ D DG+T LH+AA GH EVVKLLLS+ A+
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
+ D G T A+ +GN EV +L+ +G
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN+ID+ G T LH+AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
WG T A G++E+ +L GA V
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA---NPREVPEYE 184
++A D GST A G++E+ +L GA V TP+ +A E+ E
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
L V D K ++ ++ NG + +IL K
Sbjct: 133 LKH-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L A G + V+ LL++G+DVN+ DG T LH+AA GH E+VKLLL+K A+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
++AR + G+T AK G+ E+ +L A+GA V
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L A G + V+ LL +G+DVN+ DG T H+A GH E+VKLL +K A+
Sbjct: 41 DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Query: 131 IDARDRWGST 140
++AR WGS+
Sbjct: 101 VNAR-SWGSS 109
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN+ID+ G T LH+AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
WG T A G++E+ +L GA V
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA---NPREVPEYE 184
++A D GST A G++E+ +L GA V TP+ +A E+ E
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
L V D K ++ ++ NG + +IL K
Sbjct: 133 LKH-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 85/157 (54%), Gaps = 13/157 (8%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+L+ A G+ V+DLL G+D N+ D DGRT LH AA GH E+VKLLLSK A+ +A+
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVANPREVPEYELNPLEL 190
D G T A G+ E+ +L ++GA P K RTP+ A E E+ L L
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYA--AENGHKEIVKL-L 122
Query: 191 QVRKADGITKGS-----YQVAKWNGTKVWVKILDKES 222
+ AD T S +A+ +G + VK+L+K+
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 5/109 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L + A G + V+ LL++G+D N+ D DGRT LH AA GH E+VKLLLSK A+
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA 175
+A+D G T A G+ E+ +L ++GA P T RTP+ +A
Sbjct: 96 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNTSDSDGRTPLDLA 143
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L + A G + V+ LL++G+D N+ D DGRT LH AA GH E+VKLLLSK A+
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
+ D G T A+ +GN E+ +L+ +G
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G+T LH+AA +GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPR---EVPEYE 184
++A D+ G T A YG++E+ +L GA V T TP+ +A E+ E
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
L V D K ++ ++ NG + +IL K
Sbjct: 133 L-KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 57/89 (64%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN++D +G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD 98
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
G T A Y+G++E+ +L GA V
Sbjct: 99 ATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+D N+ D GRT LH+AA GH+E+V++LL A+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
++A D G+T A G++E+ +L GA V T +T
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGIT 103
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
+ T L A G ++ VE LL G+DVN+ D G T L++AA GH+E+V++LL A+
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
++A+D++G TA + GN ++ IL+
Sbjct: 127 VNAQDKFGKTAFDISIDIGNEDLAEILQ 154
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 4/103 (3%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R G ++ VE LL G+DVN+ D DG T LH+AA EGH+E+V++LL A+++A+D
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
+ G T A G++E+ +L GA V K +TP +A
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
++A+D+ G T A G++E+ +L GA V K TP+ +A
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 4/103 (3%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R G ++ VE LL G+DVN+ D DG T LH+AA EGH+E+V++LL A+++A+D
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
+ G T A G++E+ +L GA V K +TP +A
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYE 184
++A+D+ G T A G++E+ +L GA V K TP+ +A E+ E
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKES 222
L V D K + +A NG + ++L K +
Sbjct: 121 LKA-GADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L A G ++ VE LL G+DVN+ DL G T LH+AA GH+E+V++LL A+
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
++A D G T A YG++E+ +L GA V
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN+ D DG T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQD 143
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D DG T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYE 184
++A D G T A G++E+ +L GA V TP+ +A E+ E
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL 218
L V D K ++ ++ NG + +IL
Sbjct: 133 LKH-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+LL A G V L+ G+DVN+ D G T LH+AA GH+E+V++LL A++DA
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
D +G T A Y+G++E+ +L GA V MT
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMT 115
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 66.6 bits (161), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R G ++ V+ LL G+DVN+ D +GRT LH+AA GH+EVVKLLL A+++A+D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
+ G T A G++EV +L GA
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 57.4 bits (137), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
+GRT LH+AA GH+EVVKLLL A+++A+D+ G T A G++EV +L GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 164 V---PKTKRTPMTVA 175
V K RTP+ +A
Sbjct: 61 VNAKDKNGRTPLHLA 75
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D+ G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPR---EVPEYE 184
++A D GST A ++G++E+ +L GA V TP+ +A R E+ E
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
L V D K ++ ++ NG + +IL K
Sbjct: 133 L-KYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYE 184
++A+D+ G T A G++E+ +L GA V K TP+ +A E+ E
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL 218
L V D K ++ ++ NG + +IL
Sbjct: 133 LKA-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R G ++ VE LL G+DVN+ D DG T LH+AA EGH+E+V++LL A+++A+D
Sbjct: 84 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 143
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R G ++ VE LL G+DVN++D G T LH+AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
GST A G++E+ +L GA V
Sbjct: 111 TIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A RG ++ VE LL G+DVN+ D G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQD 143
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPR---EVPEYE 184
++A D GST A G++E+ +L GA V TP+ +A E+ E
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL 218
L V D K ++ ++ NG + +IL
Sbjct: 133 L-KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+LL A G V L+ G+DVN++D G T LH+AA GH+E+V++LL A++DA
Sbjct: 17 KLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPR---EVPEYELNPL 188
D +G T A G++E+ +L GA V T TP+ +A E+ E L
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL-KY 135
Query: 189 ELQVRKADGITKGSYQVAKWNGTKVWVK 216
V D K ++ ++ NG + K
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A RG ++ VE LL G+DVN+ D+ GRT LH+AA GH+E+V++LL A+++A+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
L+ G+DVN++D G T LH+AA GH+E+V++LL A+++A D WG T A G+
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 151 VEVYNILKARGAKV 164
+E+ +L GA V
Sbjct: 93 LEIVEVLLEYGADV 106
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN+ D G T LH+AA +GH+E+V++LL A+++A D
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
R G T A G +E+ +L GA V +T
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLT 140
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D +G T LH+AA G +E+V++LL A+
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA 175
++A D G T A Y G++E+ +L GA V R TP+ +A
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN+ D G T LH+AA G +E+V++LL A+++A+D
Sbjct: 76 LHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Query: 136 RWGSTA 141
G TA
Sbjct: 136 ALGLTA 141
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLL 124
L A G ++ VE LL G+DVN+ D G TA I+ +G ++ ++L
Sbjct: 109 LHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPR---EVPEYE 184
++A+D G T A G++E+ +L GA V + TP+ +A R E+ E
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
L V D K ++ ++ NG + +IL K
Sbjct: 133 LKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A RG ++ VE LL G+DVN+ D+ GRT LH+AA GH+E+V++LL A+++A+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
L+ G+DVN++D G T LH+AA GH+E+V++LL A+++ARD WG T A G+
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 151 VEVYNILKARGAKV 164
+E+ +L GA V
Sbjct: 93 LEIVEVLLEYGADV 106
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 56/83 (67%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A RG ++ VE LL G+DVN++D G T LH+AA +GH+E+V++LL A+++A+D
Sbjct: 84 LHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD 143
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T LH+ GH+E++++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK---RTPMTVA---NPREVPEYE 184
++A D+ G T A Y G++E+ +L GA V TP+ +A E+ E
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
L V D K ++ ++ NG + +IL K
Sbjct: 133 L-KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
L+ G+DVN+ D G T LH+AA GH+E+V++LL A+++A D G T A +G+
Sbjct: 33 LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 151 VEVYNILKARGAKVPKTK---RTPMTVA---NPREVPEYELNPLELQVRKADGITKGSYQ 204
+E+ +L GA V TP+ +A E+ E L V D K ++
Sbjct: 93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFD 151
Query: 205 VAKWNGTKVWVKILDK 220
++ NG + +IL K
Sbjct: 152 ISIDNGNEDLAEILQK 167
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 55/83 (66%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN+ D++G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN++D G T L +AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
G T A +G++E+ +L GA V
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A RG ++ VE LL G+DVN+ D GRT LH+AA GH+E+V++LL A+++A+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
L+ G+DVN++D G T LH+AA GH+E+V++LL A+++A D WG T A G+
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 151 VEVYNILKARGAKV 164
+E+ +L GA V
Sbjct: 93 LEIVEVLLEYGADV 106
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
VE LL G+DVN+ D DG T LH+AA GH+E+V++LL A+++A+D +G T A
Sbjct: 63 VEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAAD 122
Query: 148 YGNVEVYNILKARGAKV 164
G++E+ +L GA V
Sbjct: 123 RGHLEIVEVLLKHGADV 139
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T LH+AA GH E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPR---EVPEYE 184
++ARD G T A G++E+ +L GA V TP+ +A R E+ E
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 185 LNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDK 220
L V D K ++ ++ NG + +IL K
Sbjct: 133 LKH-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 62.0 bits (149), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 55/88 (62%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
++A+D++G TA + GN ++ IL+
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQ 88
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 17/117 (14%)
Query: 179 EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL-DKESHKDPERINAFTHELT 237
++P +LN E K + G+ A+W+G+ V VKIL +++ H ER+N F E+
Sbjct: 33 DIPWCDLNIKE----KIGAGSFGTVHRAEWHGSDVAVKILMEQDFHA--ERVNEFLREVA 86
Query: 238 IVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTSGGKHK 294
I+++ RHPN+V F+GAVTQ + IV EY ++ S+ ++ H SG + +
Sbjct: 87 IMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSL----------YRLLHKSGAREQ 133
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 17/117 (14%)
Query: 179 EVPEYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKIL-DKESHKDPERINAFTHELT 237
++P +LN E K + G+ A+W+G+ V VKIL +++ H ER+N F E+
Sbjct: 33 DIPWCDLNIKE----KIGAGSFGTVHRAEWHGSDVAVKILMEQDFHA--ERVNEFLREVA 86
Query: 238 IVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLSFHKQTHTSGGKHK 294
I+++ RHPN+V F+GAVTQ + IV EY ++ S+ ++ H SG + +
Sbjct: 87 IMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSL----------YRLLHKSGAREQ 133
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN++D DG T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
++A D +G T A G++E+ +L GA V
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D L A G ++ VE LL G+DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
++A+D++G TA + GN ++ IL+
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEILQ 133
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN+ D G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV 164
G T A Y G++E+ +L GA V
Sbjct: 111 YEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 55/83 (66%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN+ D +G T LH+AA +GH+E+V++LL A+++A+D
Sbjct: 84 LHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYE--LNPL 188
++A D +G+T A G++E+ +L GA V T P + Y+ L +
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFT---PLHLAAYDGHLEIV 129
Query: 189 EL------QVRKADGITKGSYQVAKWNGTKVWVKILDK 220
E+ V D K ++ ++ NG + +IL K
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 55/83 (66%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A RG ++ VE LL G+DVN+ D +G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQD 143
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPREVPEYELNP 187
++A D G T A G++EV +L GA V TP+ +A + E+
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLA--ANIGHLEIVE 130
Query: 188 LELQ----VRKADGITKGSYQVAKWNGTKVWVKILDK 220
+ L+ V D K ++ ++ NG + +IL K
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 49/71 (69%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
VE LL G+DVN+ D DG T LH+AA GH+E+V++LL A+++A+D++G TA +
Sbjct: 63 VEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 122
Query: 148 YGNVEVYNILK 158
GN ++ IL+
Sbjct: 123 NGNEDLAEILQ 133
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T LH+AA H+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 173
++A D GST A +G++E+ +L GA V + T
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLL 124
D + L A G ++ VE LL G+DVN+ D G+TA I+ G+ ++ ++L
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 48/71 (67%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
VE LL G+DVN+ID G T LH+ A GH+E+V++LL A+++A+D++G TA +
Sbjct: 63 VEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 122
Query: 148 YGNVEVYNILK 158
GN ++ IL+
Sbjct: 123 NGNEDLAEILQ 133
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T LH+AA H+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
++A D G T YG++E+ +L GA V
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 51 SLDPIRRSPVQDELTVPENL----------DSTMQ--LLFMACRGDVKGVEDLLNEGSDV 98
L P+ + + D L + E L D+ + L +A G ++ VE LL G+DV
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
Query: 99 NSIDLDGRTALHIAACEGHVEVVKLL 124
N+ D G+TA I+ G+ ++ ++L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 77 LFMA-CRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L++A G ++ VE LL G+DVN++D G T LH+AA GH+E+ ++LL A+++A+D
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 111 KFGKTAFDISIGNGNEDLAEILQ 133
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DVN+ D G T L++A GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
++A D G T A + G++E+ +L GA V
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 58.5 bits (140), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DV + D +G T LH+AA GH+EVVKLLL A+
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
++A+D++G TA + GN ++ IL+
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 112 AACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
AA G + V++L++ A++ A+D+ GST A G++EV +L GA V
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A + V+ LL G N+ + G T LH+AA EGH E+V LLLSK+AN + +
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVAN 176
+ G T G+V V ++L G V T R TP+ VA+
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A R G V+ LL ++ N G T LHIAA EGHVE V LL K+A+
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAK---VPKTKRTPMTVANPREVPEYELNPLELQV 192
+ G T A YG V V +L R A K TP+ VA V L+ ++L +
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA----VHHNNLDIVKLLL 199
Query: 193 RKADGITKGSYQVAKWNG 210
+ GS WNG
Sbjct: 200 PRG-----GSPHSPAWNG 212
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 6/157 (3%)
Query: 83 GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 142
G + V++LL G+ N ++ T LH+AA GH EV K LL KA ++A+ + T
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84
Query: 143 ADAKYYGNVEVYNILKARGAK---VPKTKRTPMTVANPREVPEYELNPLELQVRKADGIT 199
A G+ + +L A TP+ +A E L LE + +A
Sbjct: 85 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK 144
Query: 200 KGS---YQVAKWNGTKVWVKILDKESHKDPERINAFT 233
KG + AK+ +V +L++++H + N T
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
E++ L A G + V LL++ ++ N + G T LH+ A EGHV V +L+
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
Query: 128 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK 168
+DA R G T A +YGN+++ L A V KTK
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 342
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L MA R G + + LL + VN+ D +T LH AA GH +VKLLL AN +
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 136 RWGSTAAADAKYYGNVE-VYNILKARGAKVPKTKR--TPMTVA 175
G T A G+VE V +L+ ++ TK+ TP+ VA
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G V+ E LL + N+ +G T LH+A ++++VKLLL + + +
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 136 RWGSTAAADAKYYGNVEV 153
G T A VEV
Sbjct: 210 WNGYTPLHIAAKQNQVEV 227
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G ++ VE LL G+DVN+ GRT LH+AA H+E+V++LL A+++A+D
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++G TA + GN ++ IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L G+DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
++A G T A + ++E+ +L GA V
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D +LL A G V L+ G+DV + D +G T LH+AA GH+EVVKLLL A+
Sbjct: 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
+ A+D++G TA + GN ++ IL+
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 112 AACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
AA G + V++L++ A++ A+D+ GST A G++EV +L GA V
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L + +GD+ VE LL GSD N D G T LH A GH++VV+LLL KA ++
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
+ DA G+V++ +L + GA
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 77 LFMAC-RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L AC G +K VE LL + VN+ + LH AA GHV++VKLLLS A+ +A +
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 136 RWG 138
+G
Sbjct: 107 IFG 109
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 105 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
G T LHIA+ +G + V+ LL ++ + +D G T +A +G+++V +L A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 165 PKT 167
T
Sbjct: 70 NTT 72
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Query: 38 RRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSD 97
R ++ G ++ L+P PV D L GD + V LL G+D
Sbjct: 10 RNEQLKRWIGSETDLEP----PVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD 65
Query: 98 VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 157
+N ++DG TALH A + +V++VK L+ ANI+ D G A G +++ L
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 158 KARGAKVPKTKR---TPMTV 174
++GA V TP+ +
Sbjct: 126 ISQGAHVGAVNSEGDTPLDI 145
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 105 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 157
G TALH+AA +G+ EV+KLL+ + +++ +D G T A ++G E IL
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A +G + ++ L+ DVN D DG T LH AA G E ++L+ +++A +
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262
Query: 136 RWGSTA--AADAKYYGNVE 152
+ G TA AD G +E
Sbjct: 263 KVGQTAFDVADEDILGYLE 281
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 69 NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 126
N ++ QLL A GDV+ V+ L S VN D++GR T LH AA V VV+ LL
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY 183
A++ A+D+ G +A YG+ EV +L GA V K TP+ A + +Y
Sbjct: 66 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKY 123
Query: 184 ELNPLELQ 191
E+ L LQ
Sbjct: 124 EICKLLLQ 131
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L F A V VE LL G+DV++ D G LH A GH EV +LL+ A ++ D
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 107
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTV 174
W T +A G E+ +L GA K R TP+ +
Sbjct: 108 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 41 NMRFSFGRQSSLDPIRRSPVQDELTVPENL-----------DSTMQLLFMACR-GDVKGV 88
N R GRQS+ P+ + + ++V E L + L AC G +
Sbjct: 36 NCRDIEGRQST--PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 89 EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 148
E L+ G+ VN DL T LH AA +G E+ KLLL A+ ++R G+T D
Sbjct: 94 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT-PLDLVKD 152
Query: 149 GNVEVYNILKARGA 162
G+ ++ ++L+ A
Sbjct: 153 GDTDIQDLLRGDAA 166
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 69 NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 126
N ++ QLL A GDV+ V+ L S VN D++GR T LH AA V VV+ LL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY 183
A++ A+D+ G +A YG+ EV +L GA V K TP+ A + +Y
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKY 121
Query: 184 ELNPLELQ 191
E+ L LQ
Sbjct: 122 EICKLLLQ 129
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L F A V VE LL G+DV++ D G LH A GH EV +LL+ A ++ D
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTV 174
W T +A G E+ +L GA K R TP+ +
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 41 NMRFSFGRQSSLDPIRRSPVQDELTVPENL-----------DSTMQLLFMACR-GDVKGV 88
N R GRQS+ P+ + + ++V E L + L AC G +
Sbjct: 34 NCRDIEGRQST--PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 89 EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 148
E L+ G+ VN DL T LH AA +G E+ KLLL A+ ++R G+T D
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT-PLDLVKD 150
Query: 149 GNVEVYNILKARGA 162
G+ ++ ++L+ A
Sbjct: 151 GDTDIQDLLRGDAA 164
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 69 NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 126
N ++ QLL A GDV+ V+ L S VN D++GR T LH AA V VV+ LL
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY 183
A++ A+D+ G +A YG+ EV +L GA V K TP+ A + +Y
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKY 125
Query: 184 ELNPLELQ 191
E+ L LQ
Sbjct: 126 EICKLLLQ 133
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L F A V VE LL G+DV++ D G LH A GH EV +LL+ A ++ D
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 109
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTV 174
W T +A G E+ +L GA K R TP+ +
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 15/141 (10%)
Query: 41 NMRFSFGRQSSLDPIRRSPVQDELTVPENL-----------DSTMQLLFMACR-GDVKGV 88
N R GRQS+ P+ + + ++V E L + L AC G +
Sbjct: 38 NCRDIEGRQST--PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 89 EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 148
E L+ G+ VN DL T LH AA +G E+ KLLL A+ ++R G+T D
Sbjct: 96 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT-PLDLVKD 154
Query: 149 GNVEVYNILKARGAKVPKTKR 169
G+ ++ ++L+ A + K+
Sbjct: 155 GDTDIQDLLRGDAALLDAAKK 175
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 83 GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTA 141
G + ++ LL +DVN D +G LH+AA EGH+ VV+ L+ A N+ R+ G TA
Sbjct: 81 GQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 142 AADAKYYGNVEVYNILKARGA 162
A+ YG EV ++++A GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+L A RGD++ + LL +VN+ + GRTAL + G+ E+ + LL + AN D +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNIL 157
DR G DA G ++ L
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTL 89
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 83 GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTA 141
G + ++ LL +DVN D +G LH+AA EGH+ VV+ L+ A N+ R+ G TA
Sbjct: 81 GFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 142 AADAKYYGNVEVYNILKARGA 162
A+ YG EV ++++A GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+L A RGD++ + LL +VN+ + GRTAL + G+ E+ + LL + AN D +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNILKARGAKV 164
DR G DA G ++ L A V
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLENQADV 96
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 83 GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 142
GD+ V+D + +G DVN GR LH AA G +E+++ LL K A+I+A D+ T
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 143 ADAKYYGNVEVYNILKARGAKVPKTKRTP 171
A Y G+V +L ++GA KT + P
Sbjct: 78 LSAVYEGHVSCVKLLLSKGAD--KTVKGP 104
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 60 VQDELTVPENLDSTMQ-----LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC 114
V+D + E+++ T++ L + A G ++ +E LL +G+D+N+ D T L A
Sbjct: 23 VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82
Query: 115 EGHVEVVKLLLSKKANIDARDRWGSTA 141
EGHV VKLLLSK A+ + G TA
Sbjct: 83 EGHVSCVKLLLSKGADKTVKGPDGLTA 109
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 83 GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 142
GD+ V+D + +G DVN GR LH AA G +E+++ LL K A+I+A D+ T
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 143 ADAKYYGNVEVYNILKARGAKVPKTKRTP 171
A Y G+V +L ++GA KT + P
Sbjct: 73 LSAVYEGHVSCVKLLLSKGAD--KTVKGP 99
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 60 VQDELTVPENLDSTMQ-----LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC 114
V+D + E+++ T++ L + A G ++ +E LL +G+D+N+ D T L A
Sbjct: 18 VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 77
Query: 115 EGHVEVVKLLLSKKANIDARDRWGSTA 141
EGHV VKLLLSK A+ + G TA
Sbjct: 78 EGHVSCVKLLLSKGADKTVKGPDGLTA 104
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 85 VKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 144
V+ V+ LL G+DV++ D G LH A GH EV +LLL A ++A D W T +
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE 130
Query: 145 AKYYGNVEVYNILKARGA 162
A VEV ++L + GA
Sbjct: 131 AASKNRVEVCSLLLSHGA 148
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 97 DVNSIDLDGR--TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 154
+VN DGR T LH+AA V +V+LLL A++ A+D+ G +A YG+ EV
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 155 NILKARGAKV 164
+L GA V
Sbjct: 108 ELLLKHGACV 117
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
E LL +G++VN + D T LH+AA H +V+++L A ++A D G TA A
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289
Query: 148 YGNVEVYNILKARGA 162
G+++ +L + G+
Sbjct: 290 AGHLQTCRLLLSYGS 304
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
+E L G+ +N++D G+TALH AA GH++ +LLLS ++ G TAA
Sbjct: 263 MEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAA----Q 318
Query: 148 YGNVEVYNIL 157
GN V IL
Sbjct: 319 MGNEAVQQIL 328
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L AC G + E LL G+ VN++DL T LH AA + VEV LLLS A+ +
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 136 RWGSTA 141
G +A
Sbjct: 155 CHGKSA 160
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 83 GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTA 141
G + ++ LL +DVN D +G LH+AA EGH+ VV+ L+ A N+ R+ G TA
Sbjct: 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 142 AADAKYYGNVEVYNILKARGA 162
A+ YG EV ++++A GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+L A RGD++ + LL +VN+ + GRTAL + G+ E+ + LL + AN D +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNIL 157
DR G DA G ++ L
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTL 89
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 83 GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTA 141
G + ++ LL +DVN D +G LH+AA EGH+ VV+ L+ A N+ R+ G TA
Sbjct: 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 142 AADAKYYGNVEVYNILKARGA 162
A+ YG EV ++++A GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+L A RGD++ + LL +VN+ + GRTAL + G+ E+ + LL + AN D +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNIL 157
DR G DA G ++ L
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTL 89
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 83 GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTA 141
G + ++ LL +DVN D +G LH+AA EGH+ VV+ L+ A N+ R+ G TA
Sbjct: 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 142 AADAKYYGNVEVYNILKARGA 162
A+ YG EV ++++A GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 75 QLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
+L A RGD++ + LL +VN+ + GRTAL + G+ E+ + LL + AN D +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 135 DRWGSTAAADAKYYGNVEVYNIL 157
DR G+ DA G ++ L
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTL 89
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
LL G++VN +L+G T L +A+ G E+VK LL A+I ARD G TA A A+ +G
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 151 VEVYNIL 157
EV I
Sbjct: 180 QEVIKIF 186
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 77 LFMACRGDVKGV-EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A + + G+ E LL++GS+VN+ D G+T L + G+ E+ LL AN++ R+
Sbjct: 72 LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN 131
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTV-ANPREVPEYELNPLELQVRK 194
G T A YG E+ L GA + T +T A+ R E+ + +VR+
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Query: 195 A 195
A
Sbjct: 192 A 192
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 60 VQDELTVPENLDSTMQL--------LFMACRGDVKGVEDLLNEGSD-VNSIDLDGRTALH 110
++DE ++ +NLD L +AC ++ D L E D + D++G TAL
Sbjct: 14 IKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALI 73
Query: 111 IAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK-- 168
A + + + LLSK +N++ +D G T + +G E+ L GA V
Sbjct: 74 WAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133
Query: 169 -RTPMTVANPREVPEYELNPLEL 190
TP+ VA+ E LEL
Sbjct: 134 GETPLIVASKYGRSEIVKKLLEL 156
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 69 NLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLL 124
NL+ L+ + G + V+ LL G+D+++ DL G TA A G EV+K+
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 2/169 (1%)
Query: 44 FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACR-GDVKGVEDLLNEGSDVNSID 102
F+ R+ + +R E + + D L ACR G VE L+ G+ +N ++
Sbjct: 10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69
Query: 103 LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
T LH+AA GH ++V+ LL KA+I+A + G+ A ++G +V L A GA
Sbjct: 70 RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Query: 163 KVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNGT 211
V + + + P EL E + + + Y+ W GT
Sbjct: 130 LVSICNKYGEMPVDKAKAPLREL-LRERAEKMGQNLNRIPYKDTFWKGT 177
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 67 PENLDSTMQLLFMACR-GDVKGVEDLL-NEGSDVNSIDLDGRTALHIAACEGHVEVVKLL 124
PE +D +F CR G+ V L N +D+N D G + LH A EG VV++L
Sbjct: 3 PEFMDD----IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML 58
Query: 125 LSKKANIDARDRWGSTAAADAKYYGNVEV 153
+ + A I+ +R T A +G+ ++
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDI 87
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
LL + G+ V+ ++ E D + + +G TALH A C GH E+VK L+ N++A D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA 175
G T A NV+V L GA V + M A
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 35 FDPRRNNMRFSFGRQSSLDPIRRSPVQ-DELTVPENLDSTMQLLFMACRGDVKGVEDLLN 93
F+P + + D ++R + D+ ++P N + L C G + V+ L+
Sbjct: 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 94 EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 144
G +VN+ D DG T LH AA +V+V K L+ A + A AAD
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
LL + G+ V+ ++ E D + + +G TALH A C GH E+VK L+ N++A D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA 175
G T A NV+V L GA V + M A
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 81 CRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 140
C G + V+ L+ G +VN+ D DG T LH AA +V+V K L+ A + A
Sbjct: 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ 138
Query: 141 AAAD 144
AAD
Sbjct: 139 TAAD 142
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
VE LL G+D +G T +AA G V+++KL LSK A+++ D +G TA +A
Sbjct: 75 VELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 134
Query: 148 YGNVEVYNILKARGAKVPKTKRT 170
YG V+ L RGA V ++T
Sbjct: 135 YGKVKALKFLYKRGANVNLRRKT 157
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR- 134
+ A G VK ++ L++G+DVN D G TA AA G V+ +K L + AN++ R
Sbjct: 96 FILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 155
Query: 135 ---------DRWGSTAAADAKYYGNVEVYNIL 157
+ G+TA DA G+VEV IL
Sbjct: 156 KTKEDQERLRKGGATALMDAAEKGHVEVLKIL 187
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
Query: 78 FM--ACRGDVKGVEDLLNEGSDVN----------SIDLDGRTALHIAACEGHVEVVKLLL 125
FM A G VK ++ L G++VN + G TAL AA +GHVEV+K+LL
Sbjct: 129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 188
Query: 126 SK-KANIDARDRWGSTAAADAKYY---GNVE-VYNILKARGAKV---PKTKRTPMTVA 175
+ A+++A D G A A +VE + ++L GA V + +TP+ +A
Sbjct: 189 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 246
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
VE LL G+D +G T +AA G V+++KL LSK A+++ D +G TA +A
Sbjct: 55 VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114
Query: 148 YGNVEVYNILKARGAKVPKTKRT 170
YG V+ L RGA V ++T
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKT 137
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR- 134
L A G VK ++ L++G+DVN D G TA AA G V+ +K L + AN++ R
Sbjct: 76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135
Query: 135 ---------DRWGSTAAADAKYYGNVEVYNIL 157
+ G+TA DA G+VEV IL
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
Query: 78 FM--ACRGDVKGVEDLLNEGSDVN----------SIDLDGRTALHIAACEGHVEVVKLLL 125
FM A G VK ++ L G++VN + G TAL AA +GHVEV+K+LL
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
Query: 126 SK-KANIDARDRWGSTAAADAKYY---GNVE-VYNILKARGAKV---PKTKRTPMTVA 175
+ A+++A D G A A +VE + ++L GA V + +TP+ +A
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 44 FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACR-GDVKGVEDLLNEGSDVNSID 102
F+ R+ + +R E + + D L ACR G VE L+ G+ +N ++
Sbjct: 5 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 64
Query: 103 LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA 162
T LH+AA GH ++V+ LL KA+I+A + G+ A ++G +V L A GA
Sbjct: 65 RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Query: 163 KVPKTKRTPMTVANPREVPEYEL 185
V + + + P EL
Sbjct: 125 LVSICNKYGEMPVDKAKAPLREL 147
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 74 MQLLFMACR-GDVKGVEDLL-NEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
M +F CR G+ V L N +D+N D G + LH A EG VV++L+ + A I
Sbjct: 1 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 60
Query: 132 DARDRWGSTAAADAKYYGNVEV 153
+ +R T A +G+ ++
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDI 82
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
V+ LL +G+ VN+++ +G T LH AA + E+ +LL AN DA+D + +TA A
Sbjct: 89 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 148
Query: 148 YGNVEVYNIL 157
GN+++ +IL
Sbjct: 149 KGNLKMIHIL 158
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 40 NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDV 98
N M + L+ ++ S + D+ L + DS L + G + VE LL G V
Sbjct: 7 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 99 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 140
N D G + LHIAA G E+VK LL K A ++A ++ G T
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 108
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 68 ENLDSTMQLLFMACRGDVKGV-EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
E S + + +A G ++ + E +L + S D D RTALH A GH E+V+ LL
Sbjct: 2 EGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPREVPEY 183
++ +D G + A G E+ L +GA+V + TP+ A + E
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 121
Query: 184 ELNPLE 189
+ LE
Sbjct: 122 AVMLLE 127
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
LL G++ ++ D TA+H AA +G+++++ +LL KA+ + +D G+T A
Sbjct: 125 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 184
Query: 151 VEVYNILKARGAKV---PKTKRTPMTVA 175
VE +L ++GA + K ++TP+ VA
Sbjct: 185 VEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 80 ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
A +G++K + LL + N D +G T LH+A E VE KLL+S+ A+I
Sbjct: 147 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
V+ LL +G+ VN+++ +G T LH AA + E+ +LL AN DA+D + +TA A
Sbjct: 90 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 149
Query: 148 YGNVEVYNIL 157
GN+++ +IL
Sbjct: 150 KGNLKMIHIL 159
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 40 NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDV 98
N M + L+ ++ S + D+ L + DS L + G + VE LL G V
Sbjct: 8 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 67
Query: 99 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 140
N D G + LHIAA G E+VK LL K A ++A ++ G T
Sbjct: 68 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 109
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 68 ENLDSTMQLLFMACRGDVKGV-EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLS 126
E S + + +A G ++ + E +L + S D D RTALH A GH E+V+ LL
Sbjct: 3 EGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 62
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPREVPEY 183
++ +D G + A G E+ L +GA+V + TP+ A + E
Sbjct: 63 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 122
Query: 184 ELNPLE 189
+ LE
Sbjct: 123 AVMLLE 128
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
LL G++ ++ D TA+H AA +G+++++ +LL KA+ + +D G+T A
Sbjct: 126 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 185
Query: 151 VEVYNILKARGAKV---PKTKRTPMTVA 175
VE +L ++GA + K ++TP+ VA
Sbjct: 186 VEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 80 ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
A +G++K + LL + N D +G T LH+A E VE KLL+S+ A+I
Sbjct: 148 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 77 LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R ++G VEDL+ +D+N+ D G+TALH AA + E V +LL AN DA+D
Sbjct: 122 LILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD 181
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR 178
T A G+ E L A T R P VA+ R
Sbjct: 182 DKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASER 227
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGST 140
LL+ G+D NS D GRT LH A + V ++LL +A N++AR G+T
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT 120
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 77 LFMACRGDVKGVEDLL--NEGSDVNSIDLDGRTALHIAA---CEGHVEVVKLLLSKKANI 131
L A D GV +L N +++N+ DG T L +AA EG VE L++ A+I
Sbjct: 88 LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED---LITADADI 144
Query: 132 DARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQ 191
+A D G TA A N E NIL M AN + + PL L
Sbjct: 145 NAADNSGKTALHWAAAVNNTEAVNILL-------------MHHANRDAQDDKDETPLFLA 191
Query: 192 VRKADGITKGSYQVAK 207
R +GSY+ +K
Sbjct: 192 AR------EGSYEASK 201
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 66 VPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNS-IDLDGRTALHIAACEGHVEVVKLL 124
+ N DST Q+ + DLL +G+++N+ +D G T+LH+AA + K L
Sbjct: 22 IENNEDSTAQV-----------ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 70
Query: 125 LSKKANIDARDRWGST---AAADAKYYGNVEVYNIL 157
L A+ +++D G T AA A G V+ IL
Sbjct: 71 LDAGADANSQDNTGRTPLHAAVAADAMG---VFQIL 103
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 77 LFMACR-GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +AC+ G + V+ LL+ + N DL G T L A GH E+V LLL A+I+A +
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 175
G+TA +A +V V +L GA V K +RT + A
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D + L A G + LL G++ + + D LH+A +GH +VVK LL A
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
+ +D G+T A G+ E+ +L GA +
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASI 178
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
++L L++ G + V LL G+ +N+ + G TALH A E HV VV+LLL
Sbjct: 148 KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH 207
Query: 128 KANIDARDRWGSTA 141
A++ ++ TA
Sbjct: 208 GASVQVLNKRQRTA 221
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 95 GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 154
G VN DG + LH+AA G +++ LLL AN AR+ + A G+ +V
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 155 NILKARGAKVPK---TKRTPMTVA 175
L AK K + TP+ A
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYA 159
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
V+ LL +G+ VN+++ +G T LH AA + E+ +LL AN DA+D + +TA A
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 148 YGNVEVYNIL---KARGAKVPKTKRTPMTVANPRE 179
GN+++ +IL KA TP+ +A E
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 40 NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDV 98
N M + LD ++ + D+ L + DS L + G + VE LL G V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 99 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 140
N D G + LHIAA G E+VK LL K A+++A ++ G T
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCT 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 89 EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 148
E +L + S D D RTALH A GH E+V+ LL ++ +D G + A
Sbjct: 24 ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83
Query: 149 GNVEVYNILKARGAKVPKTKR---TPMTVANPREVPEYELNPLE 189
G E+ L +GA V + TP+ A + E + LE
Sbjct: 84 GRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
LL G++ ++ D TA+H AA +G++++V +LL KA+ + +D G+T A
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 151 VEVYNILKARGAKV---PKTKRTPMTVA 175
VE L +GA + K ++TP+ VA
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 80 ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
A +G++K V LL + N D +G T LH+A E VE K L+++ A+I
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G + V+ LL +G+ VN+++ +G T LH AA + E+ +LL AN DA+D
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 136 RWGSTAAADAKYYGNVEVYNIL---KARGAKVPKTKRTPMTVANPRE 179
+ +TA A GN+++ +IL KA TP+ +A E
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 40 NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDV 98
N M + LD ++ + D+ L + DS L + G + VE LL G V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 99 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 140
N D G + LHIAA G E+VK LL K A+++A ++ G T
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCT 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 89 EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 148
E +L + S D D RTALH A GH E+V+ LL ++ +D G + A
Sbjct: 24 ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83
Query: 149 GNVEVYNILKARGAKVPKTKR---TPMTVANPREVPEYELNPLE 189
G E+ L +GA V + TP+ A + E + LE
Sbjct: 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
LL G++ ++ D TA+H AA +G++++V +LL KA+ + +D G+T A
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 151 VEVYNILKARGAKV---PKTKRTPMTVA 175
VE L +GA + K ++TP+ VA
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 80 ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
A +G++K V LL + N D +G T LH+A E VE K L+++ A+I
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 85 VKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAA 143
++ V+ L+ G+ V+ D +G T LH+AA +GH EVV+ LLS + +++ +D G T
Sbjct: 57 LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 144 DAKYYGNVEVYNILKARGAKV 164
A Y +V++ +L ++G+ +
Sbjct: 117 WATEYKHVDLVKLLLSKGSDI 137
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 64 LTVPENLDSTMQLLFMACRGDVKGVEDLLNEGS-DVNSIDLDGRTALHIAACEGHVEVVK 122
L P++ + + L A +G + V+ LL+ G DVN D G T + A HV++VK
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 123 LLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA 159
LLLSK ++I+ RD + A + G V++ IL A
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 83 GDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 142
G V L+ G+++++ D RT L AA H+E VK L+ A +D +D GST
Sbjct: 22 GHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81
Query: 143 ADAKYYGNVEVYNILKARG 161
A G+ EV L + G
Sbjct: 82 HLAAKKGHYEVVQYLLSNG 100
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
+ + L + A G V E LL D++++++ G + LHIAA E + V L LS+ ++
Sbjct: 143 EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202
Query: 131 IDARDRWGST 140
+ +++ G T
Sbjct: 203 VTLKNKEGET 212
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 85 VKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 144
V V+ LL++GSD+N D + LH AA G V++ ++LL+ K ++ A + G +
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 145 AKYYGNVEVYNILKARGAKVP---KTKRTPMTVAN 176
A + + +R + V K TP+ A+
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 106 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV- 164
R+ LH AA GHV++ +L+ ANID T +A ++E L GA V
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 165 PKTKR--TPMTVANPR---EVPEYELNPLELQVRKAD 196
PK T + +A + EV +Y L+ ++ V D
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L A G VE LL G+DVN+ D+ TALH A H EVV+LL+ A++ +
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Query: 136 RWGSTAAADAKYYGNVEVYNILK 158
++ TA + GN ++ IL+
Sbjct: 131 KFCKTAFDISIDNGNEDLAEILQ 153
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 106 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 164
RT LH+AA EGH +V++LL A+++A+D TA A + + EV +L GA V
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 100 SIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA 159
+ D G + LH+AA GH ++LL + DAR + T A G+ + +L
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 160 RGAKVPKTKRTPMTVA------NPREVPEYELNPLELQVRKADGITKGSYQVAKWNGTKV 213
GA V MT N +EV E L V K ++ ++ NG +
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVEL-LIKYGADVHTQSKFCKTAFDISIDNGNED 147
Query: 214 WVKIL 218
+IL
Sbjct: 148 LAEIL 152
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L++ + G+++ V LL G+D + + + +AL +A+ G+ ++V LLL + +I+ D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
G T A + +V+ L ARGA + + TPM +A
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
+S + L D+ G+ LL D+N D +G T L A HV+ V+ LL++ A+
Sbjct: 70 ESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGAD 127
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTP 171
+ G T A G +V +++ K+ ++ P
Sbjct: 128 LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVP 168
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D+ L+ + E LL G++VN D GR LH A GH + L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
+ ARD G A N ++ +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 88 VEDLLNEGSDVNSID--LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA 145
+ D L G+DVN ++ D T L A + + LL AN++ D G A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 146 KYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
G+ + + RGA + R P+T+A
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D+ L+ + E LL G++VN D GR LH A GH + L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
+ ARD G A N ++ +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 88 VEDLLNEGSDVNSID--LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA 145
+ D L G+DVN ++ D T L A + + LL AN++ D G A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 146 KYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
G+ + + RGA + R P+T+A
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
D+ L+ + E LL G++VN D GR LH A GH + L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILK 158
+ ARD G A N ++ +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 88 VEDLLNEGSDVNSID--LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA 145
+ D L G+DVN ++ D T L A + + LL AN++ D G A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 146 KYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
G+ + + RGA + R P+T+A
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L++ + G+++ V LL G+D + + + +AL +A+ G+ ++V LLL + +I+ D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 175
G T A +V+ L ARGA + + TPM +A
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 71 DSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 130
+S + L D+ G+ LL D+N D +G T L A HV+ V+ LL++ A+
Sbjct: 70 ESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD 127
Query: 131 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTP 171
+ G T A G +V +++ K+ ++ P
Sbjct: 128 LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVP 168
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 105 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA 159
G+TAL +A G V+VVK LL+ +A+++ +D GSTA A +G+ E+ +L A
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA 237
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 80 ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWG 138
A RG++ + + L+ VN +D G TAL+ A GH ++V+ L ++ ++ +++ G
Sbjct: 81 AKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLG 140
Query: 139 STAAADAKYYGNVEVYNILKARGAKV 164
TA A + G ++ +L A+GA+
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGART 166
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 77 LFMACRGDVKG-VEDLLNEGS-DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
L+ AC G K VE L + + ++N + G TALH AA +G+ ++V+LLL+K A D R
Sbjct: 110 LYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
Query: 135 D 135
+
Sbjct: 170 N 170
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 182 EYELNPLELQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK 241
E E + + L R G + G+ KW+G V VKIL K PE+ AF +E+ ++ K
Sbjct: 32 EIEASEVMLSTRIGSG-SFGTVYKGKWHG-DVAVKIL-KVVDPTPEQFQAFRNEVAVLRK 88
Query: 242 ARHPNVVQFVGAVTQN 257
RH N++ F+G +T++
Sbjct: 89 TRHVNILLFMGYMTKD 104
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 55 IRRSPVQDELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAAC 114
I + + D+L +L+ST L + +G + V L+ G+D + ID +G + +H+AA
Sbjct: 62 ISKGAIVDQL--GGDLNST-PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 115 EGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
GH +V L++K ++D D+ G T A Y
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 107 TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK-ARGAK 163
TALH A G+ V+ LLL AN+DA++ G +A AK NV + N L+ AR AK
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 62 DELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVV 121
D+ + + + +T ++ CR +L+ G DV D + T LH AA +++V
Sbjct: 6 DDYSTWDIVKATQYGIYERCR-------ELVEAGYDVRQPDKENVTLLHWAAINNRIDLV 58
Query: 122 KLLLSKKANID 132
K +SK A +D
Sbjct: 59 KYYISKGAIVD 69
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 95 GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 154
G D+NS T LH A +GH+ +V L+ A+ D G + A +G+ +
Sbjct: 72 GGDLNS------TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIV 125
Query: 155 NILKARGAKVPKTKRTPMT 173
L A+G V + MT
Sbjct: 126 AYLIAKGQDVDMMDQNGMT 144
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 80 ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWG 138
A + D + + LL E DV+++D +GRTAL A G + V+LL A++D RD R G
Sbjct: 52 ARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 139 STAAADAKYYGNVEVYNILKARGAKV 164
TA A Y EV L GA +
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADI 136
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
LLF+A G K V L G+D++ D+ G TALH+AA EVV+ L+ A+I+
Sbjct: 80 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 139
Query: 135 DRWGSTA 141
D G TA
Sbjct: 140 DERGLTA 146
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
L+ G+DVN++D G +H+A EGH VV L+ ++++ RD G T A+ G
Sbjct: 93 LVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGLTPLELARQRGA 151
Query: 151 VEVYNILKA 159
+ +IL+
Sbjct: 152 QNLMDILQG 160
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
L+ G+DVN++D G +H+A EGH VV L+ ++++ RD G T A+ G
Sbjct: 95 LVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGLTPLELARQRGA 153
Query: 151 VEVYNILKA 159
+ +IL+
Sbjct: 154 QNLMDILQG 162
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 37 PRRNNMRFSFGRQSSLDPIRRSPVQD-----ELTVPENLDSTMQLLFM---ACRGDVKGV 88
PR ++M G+Q +D + + +D L+ P D+ M A G +
Sbjct: 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSL 75
Query: 89 EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 148
+L+++G VN I D + LH A GH+ VK+LL A ++ T +A
Sbjct: 76 RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS 135
Query: 149 GNVEVYNILKARGAKV 164
G+ + N+L GA V
Sbjct: 136 GSWDCVNLLLQHGASV 151
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 77 LFMAC-RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
LF AC G V LL G+ V + D + +H AA GHVE V L++ NID +
Sbjct: 129 LFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 186
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 80 ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 139
A G + +L+++G VN I D + LH A GH+ VK+LL A ++
Sbjct: 11 AIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH 70
Query: 140 TAAADAKYYGNVEVYNILKARGAKV 164
T +A G+ + N+L GA V
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGASV 95
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 77 LFMAC-RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
LF AC G V LL G+ V + D + +H AA GHVE V L++ NID +
Sbjct: 73 LFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 130
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 189 ELQVRKADGITKGSYQV---AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHP 245
E++V + G +G++ V AKW V +K ++ ES + AF EL + + HP
Sbjct: 9 EIEVEEVVG--RGAFGVVCKAKWRAKDVAIKQIESESER-----KAFIVELRQLSRVNHP 61
Query: 246 NVVQFVGAVTQNIPMMIVLEY 266
N+V+ GA P+ +V+EY
Sbjct: 62 NIVKLYGACLN--PVCLVMEY 80
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 211 TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
T V VK+L + + P + E ++++ HP+V++ GA +Q+ P+++++EY
Sbjct: 54 TTVAVKMLKENA--SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEY 107
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 189 ELQVRKADGITKGSYQV---AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHP 245
E++V + G +G++ V AKW V +K ++ ES + AF EL + + HP
Sbjct: 10 EIEVEEVVG--RGAFGVVCKAKWRAKDVAIKQIESESER-----KAFIVELRQLSRVNHP 62
Query: 246 NVVQFVGAVTQNIPMMIVLEY 266
N+V+ GA P+ +V+EY
Sbjct: 63 NIVKLYGACLN--PVCLVMEY 81
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 211 TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
T V VK+L + + P + E ++++ HP+V++ GA +Q+ P+++++EY
Sbjct: 54 TTVAVKMLKENA--SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEY 107
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 211 TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
T V VK+L + + P + E ++++ HP+V++ GA +Q+ P+++++EY
Sbjct: 54 TTVAVKMLKENA--SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEY 107
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L++ A G + VE LL G+D + +AL +A +G+ ++VK+LL +++ D
Sbjct: 56 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 115
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
G T A + +V+ +L GA
Sbjct: 116 WNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 77 LFMAC-RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN--IDA 133
L +AC +G V+ LL+ G DVN D +G T L A HV+ VK+LL A+ I+
Sbjct: 89 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 148
Query: 134 RDRWGSTAAADAKYYGNVE 152
+ S A A Y +V+
Sbjct: 149 DSGYNSMDLAVALGYRSVQ 167
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 193 RKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
K G G V W + V + K +D + F E ++++ +HPN+VQ +G
Sbjct: 38 HKLGGGQYGEVYVGVWKKYSLTVAV--KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 95
Query: 253 AVTQNIPMMIVLEY 266
T P IV EY
Sbjct: 96 VCTLEPPFYIVTEY 109
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 92 LNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKYYGN 150
L E DV+++D +GRTAL A G + V+LL A++D RD R G TA A Y
Sbjct: 64 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123
Query: 151 VEVYNILKARGAKVPKTKRTPMT 173
EV L GA + +T
Sbjct: 124 PEVVEALVELGADIEVEDERGLT 146
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDAR 134
LLF+A G K V L G+D++ D+ G TALH+AA EVV+ L+ A+I+
Sbjct: 81 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140
Query: 135 DRWGSTA 141
D G TA
Sbjct: 141 DERGLTA 147
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 88 VEDLLNEGSDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK 146
V+ LL G+D++++D+ GR+ L A + +V+LLL AN++A+ GS+A A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 147 YYGNVEVYNILKARGAKVPKT---KRTPMTVANPREV 180
G + + L GA TP+ VA R V
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 228
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 97 DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKYYGNVEVYN 155
D+ + + DG TALH+A E V+LLL + A+IDA D + G + A ++ +
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 156 ILKARGAKV 164
+L GA V
Sbjct: 168 LLLQHGANV 176
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 22/94 (23%)
Query: 106 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP 165
+T LH+A VV+LL++ A+ A DR G TAA A + + P
Sbjct: 47 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH--------------RSP 92
Query: 166 KTKRTPMTVANPREVPEYELNPLELQVRKADGIT 199
R + A P L+L+ R DG+T
Sbjct: 93 TCLRALLDSAAP--------GTLDLEARNYDGLT 118
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA----NIDARDRWGSTAAA 143
V L+ G+ ++D G+TA H+A ++ LL A +++AR+ G TA
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 144 DAKYYGNVEVYNILKARGAKVP----KTKRTPM 172
A E +L RGA + K+ R+P+
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L++ A G + VE LL G+D + +AL +A +G+ ++VK+LL +++ D
Sbjct: 38 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 97
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
G T A + +V+ +L GA
Sbjct: 98 WNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 77 LFMAC-RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN--IDA 133
L +AC +G V+ LL+ G DVN D +G T L A HV+ VK+LL A+ I+
Sbjct: 71 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 130
Query: 134 RDRWGSTAAADAKYYGNVE 152
+ S A A Y +V+
Sbjct: 131 DSGYNSMDLAVALGYRSVQ 149
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 183 YELNPLELQVRKADGITK-GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK 241
+ LN EL++ + G + G + + G KV VK + K+ AF E +++ +
Sbjct: 16 WALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCI-----KNDATAQAFLAEASVMTQ 70
Query: 242 ARHPNVVQFVGAVTQNI-PMMIVLEYHAKVSM 272
RH N+VQ +G + + + IV EY AK S+
Sbjct: 71 LRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 102
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L++ A G + VE LL G+D + +AL +A +G+ ++VK+LL +++ D
Sbjct: 40 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGA 162
G T A + +V+ +L GA
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 77 LFMAC-RGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN--IDA 133
L +AC +G V+ LL+ G DVN D +G T L A HV+ VK+LL A+ I+
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132
Query: 134 RDRWGSTAAADAKYYGNVE 152
+ S A A Y +V+
Sbjct: 133 DSGYNSMDLAVALGYRSVQ 151
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 111 IAACEGHVEVVKLLL-SKKANIDARDRWGSTAAADAKYYGN----VEVYNILKARG--AK 163
+CEG VE +++ + K +ID + Y+ N VE Y A G +
Sbjct: 119 CVSCEGKVEHYRIMYHASKLSID-----------EEVYFENLMQLVEHYTT-DADGLCTR 166
Query: 164 VPKTKRTPMTVANPREV--PEYELNPLELQVRKADGITK-GSYQVAKWNGTKVWVKILDK 220
+ K K TVA E + LN EL++ + G + G + + G KV VK +
Sbjct: 167 LIKPKVMEGTVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCI-- 224
Query: 221 ESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNI-PMMIVLEYHAKVSM 272
K+ AF E +++ + RH N+VQ +G + + + IV EY AK S+
Sbjct: 225 ---KNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 274
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 149 GNVEVYNILKARGAKVPKTKRTPMTVANP-REVPEY--ELNPLELQVRKADG------IT 199
G+ E+Y K G K T P T +P R V ++ EL+ +++ + G +
Sbjct: 4 GDEELYFHFKFPGTK---TYIDPETYEDPNRAVHQFAKELDASCIKIERVIGAGEFGEVC 60
Query: 200 KGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G ++ V +K L K + + +R + F E +I+ + HPNVV G VT+ P
Sbjct: 61 SGRLKLPGKRDVAVAIKTL-KVGYTEKQRRD-FLCEASIMGQFDHPNVVHLEGVVTRGKP 118
Query: 260 MMIVLEY 266
+MIV+E+
Sbjct: 119 VMIVIEF 125
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 183 YELNPLELQVRKADGITK-GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK 241
+ LN EL++ + G + G + + G KV VK + K+ AF E +++ +
Sbjct: 7 WALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCI-----KNDATAQAFLAEASVMTQ 61
Query: 242 ARHPNVVQFVGAVTQNI-PMMIVLEYHAKVSM 272
RH N+VQ +G + + + IV EY AK S+
Sbjct: 62 LRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 93
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 166 KTKRTPMTVANPRE-VPEY--ELNPLELQVRKADGI------TKGSYQVAKWNGTKVWVK 216
+T P T +P + V E+ E++ +++ K G+ G +V V +K
Sbjct: 4 RTFVDPFTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIK 63
Query: 217 ILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
L K + D +R + F E +I+ + HPN++ G VT+ P+MI+ EY S+
Sbjct: 64 TL-KAGYTDKQRRD-FLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSL 117
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 183 YELNPLELQVRKADGITK-GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK 241
+ LN EL++ + G + G + + G KV VK + K+ AF E +++ +
Sbjct: 1 WALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCI-----KNDATAQAFLAEASVMTQ 55
Query: 242 ARHPNVVQFVGAVTQNI-PMMIVLEYHAKVSM 272
RH N+VQ +G + + + IV EY AK S+
Sbjct: 56 LRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 87
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 70 LDSTMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA 129
L+ + LL A G+++ V+ + E +D + + +G TALH A C + +V L++ A
Sbjct: 19 LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78
Query: 130 NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT 167
N+++ D G T A + + L GA + T
Sbjct: 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEGHVEVVKLLLS 126
EN D L D + V L + G+D+N + GRT LH+A V++LLL
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK 166
A+ AR G T A N + +L+A GA P+
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 104 DGRTALHIAACEGHVEVVKLLLSKKAN---IDARDRWGSTAAADAKYYGNVEVYNILKAR 160
DG TALH+A H + LL A +D ++ G TA A G L A
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 161 GAKVPKTKR 169
GA V +R
Sbjct: 68 GAGVLVAER 76
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 105 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 141
G+TALH+AA G V+ L + A + +R G TA
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 68 ENLDSTMQLLFMACRGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEGHVEVVKLLLS 126
EN D L D + V L + G+D+N + GRT LH+A V++LLL
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 127 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK 166
A+ AR G T A N + +L+A GA P+
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 104 DGRTALHIAACEGHVEVVKLLLSKKAN---IDARDRWGSTAAADAKYYGNVEVYNILKAR 160
DG TALH+A H + LL A +D ++ G TA A G L A
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 161 GAKVPKTKR 169
GA V +R
Sbjct: 68 GAGVLVAER 76
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 105 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 141
G+TALH+AA G V+ L + A + +R G TA
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I++E+
Sbjct: 48 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEF 90
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I++E+
Sbjct: 46 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEF 88
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 76 LLFMACRGDVKGVEDLLN-EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI--- 131
LL A DV+ + LL EG +V+ G TALHIAA ++E +L+ +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 132 --DARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPL 188
+ G TA A NV + L ARGA V + P + Y +PL
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 105 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 140
G L AAC G E+V+LL+ A+I A+D G+T
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 104 DGRTALHIAACEGHVEVVKLLLSKKANIDARD-------------RWGSTAAADAKYYGN 150
+G+TALHIA +V +V+ LL++ A++ AR +G + A G+
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 151 VEVYNILKARGAKV 164
E+ +L GA +
Sbjct: 134 EEIVRLLIEHGADI 147
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 76 LLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHI 111
L F AC G + V L+ G+D+ + D G T LHI
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I++E+
Sbjct: 48 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEF 90
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 105 GRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 163
GRTALH AA + +VK L+ +K +N D +D G T A G +EV L +GA
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 164 VPKTKRTPMTV 174
V T T
Sbjct: 339 VEAVDATDHTA 349
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 94 EGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 141
+GS+ + D DG+T + +AA EG +EVV L+ + A+++A D TA
Sbjct: 302 KGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTA 349
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I++E+
Sbjct: 49 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEF 91
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I++E+
Sbjct: 53 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEF 95
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G ++ KW G V VK++ + S + E F E + K HP +V+F G ++ P
Sbjct: 22 GVVKLGKWKGQYDVAVKMIKEGSMSEDE----FFQEAQTMMKLSHPKLVKFYGVCSKEYP 77
Query: 260 MMIVLEY 266
+ IV EY
Sbjct: 78 IYIVTEY 84
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 163 KVP--KTKRTPMTVANPRE-VPEY--ELNPLELQVRKADG------ITKGSYQVAKWNGT 211
K+P +T P T +P + V E+ EL+ + + K G + G ++
Sbjct: 15 KLPGLRTYVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEI 74
Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVS 271
V +K L K + + +R + F E +I+ + HPN+++ G VT++ P+MIV EY S
Sbjct: 75 SVAIKTL-KVGYTEKQRRD-FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 272 M 272
+
Sbjct: 133 L 133
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 226 PERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
P+ F E I+++ HPN+V+ +G TQ P+ IV+E
Sbjct: 153 PDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 226 PERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
P+ F E I+++ HPN+V+ +G TQ P+ IV+E
Sbjct: 153 PDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT++ P+MIV EY S+
Sbjct: 81 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 121
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT++ P+MIV EY S+
Sbjct: 64 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 104
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 220 KESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
K + D +R + F E +I+ + HPN++ G VT+ P+MI+ EY S+
Sbjct: 45 KAGYTDKQRRD-FLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSL 96
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT++ P+MIV EY S+
Sbjct: 93 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT++ P+MIV EY S+
Sbjct: 93 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT++ P+MIV EY S+
Sbjct: 93 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT++ P+MIV EY S+
Sbjct: 93 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT++ P+MIV EY S+
Sbjct: 93 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT++ P+MIV EY S+
Sbjct: 93 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 220 KESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
K + D +R + F E +I+ + HPN++ G VT+ P+MI+ EY S+
Sbjct: 51 KAGYTDKQRRD-FLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSL 102
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 96 SDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW-GSTAAADAKYYGNVEVY 154
S + + + +G T LH+A+ G++ +V+LL+S A+++A++ G TA A N ++
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 155 NILKARGAKV 164
++L GA V
Sbjct: 165 SLLLKCGADV 174
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 14/126 (11%)
Query: 89 EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN------IDARDRWGSTAA 142
E LL G D D G T LH+A +G + V +L + A + G T
Sbjct: 59 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 118
Query: 143 ADAKYYGNVEVYNILKARGAKV----PKTKRTPMTVANPREVPEYELNPLELQVRKADGI 198
A +G + + +L + GA V P RT + +A + P+ + L ++ +
Sbjct: 119 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL----VSLLLKCGADV 174
Query: 199 TKGSYQ 204
+ +YQ
Sbjct: 175 NRVTYQ 180
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 82 RGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANID 132
G + VE L++ G+DVN+ + +GRTALH+A + ++V LLL A+++
Sbjct: 124 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT++ P+MIV EY S+
Sbjct: 91 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 131
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 77 LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R V+G +EDL+N +DVN++D G++ALH AA +V+ +LL AN D ++
Sbjct: 96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 155
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR 178
T A G+ E +L A T R P +A R
Sbjct: 156 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 83 GDVKGV-EDLLNEGSDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 140
GD V D + +G+ + N D G TALH+AA + K LL A+ + +D G T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 141 ---AAADAKYYGNVEVYNIL 157
AA A G V+ IL
Sbjct: 61 PLHAAVSADAQG---VFQIL 77
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGST 140
LL +D N D GRT LH A V ++L+ +A ++DAR G+T
Sbjct: 44 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 94
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
L+ G+DVN D G +H+A EGH VV L+ ++++ RD G T A G
Sbjct: 93 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGA 151
Query: 151 VEVYNILKA 159
++ +IL+
Sbjct: 152 QDLVDILQG 160
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 96 SDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW-GSTAAADAKYYGNVEVY 154
S + + + +G T LH+A+ G++ +V+LL+S A+++A++ G TA A N ++
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 155 NILKARGAKV 164
++L GA V
Sbjct: 168 SLLLKCGADV 177
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 14/126 (11%)
Query: 89 EDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN------IDARDRWGSTAA 142
E LL G D D G T LH+A +G + V +L + A + G T
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 143 ADAKYYGNVEVYNILKARGAKV----PKTKRTPMTVANPREVPEYELNPLELQVRKADGI 198
A +G + + +L + GA V P RT + +A + P+ + L ++ +
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL----VSLLLKCGADV 177
Query: 199 TKGSYQ 204
+ +YQ
Sbjct: 178 NRVTYQ 183
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 82 RGDVKGVEDLLNEGSDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANID 132
G + VE L++ G+DVN+ + +GRTALH+A + ++V LLL A+++
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 46 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 88
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 53 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 95
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 48 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 90
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 46 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 88
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 77 LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R V+G +EDL+N +DVN++D G++ALH AA +V+ +LL AN D ++
Sbjct: 129 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 188
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR 178
T A G+ E +L A T R P +A R
Sbjct: 189 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 234
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 88 VEDLLNEGSDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST---AAA 143
+ D + +G+ + N D G TALH+AA + K LL A+ + +D G T AA
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Query: 144 DAKYYGNVEVYNIL 157
A G V+ IL
Sbjct: 100 SADAQG---VFQIL 110
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGST 140
LL +D N D GRT LH A V ++L+ +A ++DAR G+T
Sbjct: 77 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 127
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 255 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 91 LLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 150
L+ G+DVN D G +H+A EGH VV L+ ++++ RD G T A G
Sbjct: 87 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGA 145
Query: 151 VEVYNILKA 159
++ +IL+
Sbjct: 146 QDLVDILQG 154
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 77 LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R V+G +EDL+N +DVN++D G++ALH AA +V+ +LL AN D ++
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR 178
T A G+ E +L A T R P +A R
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 88 VEDLLNEGSDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST---AAA 143
+ D + +G+ + N D G TALH+AA + K LL A+ + +D G T AA
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 144 DAKYYGNVEVYNIL 157
A G V+ IL
Sbjct: 99 SADAQG---VFQIL 109
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 50 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 92
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 48 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 90
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 49 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 91
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 53 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 95
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
KV VK+L +H D + A EL I+ +H N+V +GA T P++++ EY
Sbjct: 63 KVAVKMLKSTAHADEKE--ALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEY 116
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 50 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 92
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 294 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 336
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 252 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 294
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
KV VK+L +H D + A EL I+ +H N+V +GA T P++++ EY
Sbjct: 78 KVAVKMLKSTAHADEKE--ALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEY 131
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 201 GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ 256
G+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N++ F+G T+
Sbjct: 50 GTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 103
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 61 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 103
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 201 GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ 256
G+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N++ F+G T+
Sbjct: 49 GTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 102
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 201 GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ 256
G+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N++ F+G T+
Sbjct: 42 GTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 95
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 201 GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ 256
G+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N++ F+G T+
Sbjct: 50 GTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 103
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
KV VK+L +H D + A EL I+ +H N+V +GA T P++++ EY
Sbjct: 78 KVAVKMLKSTAHADEKE--ALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEY 131
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN++ G VT++ P+MIV EY S+
Sbjct: 70 FLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSL 110
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 53 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 95
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 50 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 92
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 52 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 94
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 48 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 90
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 53 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 95
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
KV VK+L +H D + A EL I+ +H N+V +GA T P++++ EY
Sbjct: 78 KVAVKMLKSTAHADEKE--ALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEY 131
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 224 KDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+D + F E ++++ +HPN+VQ +G T+ P I+ E+
Sbjct: 48 EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 90
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
F E +I+ + HPN+++ G VT ++P+MI+ E+
Sbjct: 62 FLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEF 96
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 191 QVRKADGITKGSYQV---AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNV 247
Q+ I GS+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N+
Sbjct: 14 QITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNI 71
Query: 248 VQFVGAVTQ 256
+ F+G T+
Sbjct: 72 LLFMGYSTK 80
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
KV VK+L +H D + A EL I+ +H N+V +GA T P++++ EY
Sbjct: 70 KVAVKMLKSTAHADEKE--ALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEY 123
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 191 QVRKADGITKGSYQV---AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNV 247
Q+ I GS+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N+
Sbjct: 14 QITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNI 71
Query: 248 VQFVGAVTQ 256
+ F+G T+
Sbjct: 72 LLFMGYSTK 80
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 201 GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ 256
G+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N++ F+G T+
Sbjct: 38 GTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 91
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 191 QVRKADGITKGSYQV---AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNV 247
Q+ I GS+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N+
Sbjct: 11 QITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNI 68
Query: 248 VQFVGAVTQ 256
+ F+G T+
Sbjct: 69 LLFMGYSTK 77
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
F E +I+ + HPN+++ G VT ++P+MI+ E+
Sbjct: 64 FLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEF 98
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPNV+ G VT++ P+MI+ E+ S+
Sbjct: 55 FLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSL 95
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 201 GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ 256
G+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N++ F+G T+
Sbjct: 26 GTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 79
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 77 LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R V+G +EDL+N +DVN++D G++ALH AA +V+ +LL AN D ++
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR 178
T A G+ E +L A T R P +A R
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 88 VEDLLNEGSDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST---AAA 143
+ D + +G+ + N D G TALH+AA + K LL A+ + +D G T AA
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 144 DAKYYGNVEVYNIL 157
A G V+ IL
Sbjct: 99 SADAQG---VFQIL 109
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 191 QVRKADGITKGSYQV---AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNV 247
Q+ I GS+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N+
Sbjct: 9 QITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNI 66
Query: 248 VQFVGAVTQ 256
+ F+G T+
Sbjct: 67 LLFMGYSTK 75
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 212 KVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
KV VK+L +H D + A EL I+ +H N+V +GA T P++++ EY
Sbjct: 78 KVAVKMLKSTAHADEKE--ALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEY 131
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 191 QVRKADGITKGSYQV---AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNV 247
Q+ I GS+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N+
Sbjct: 9 QITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNI 66
Query: 248 VQFVGAVTQ 256
+ F+G T+
Sbjct: 67 LLFMGYSTK 75
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPNV+ G VT++ P+MI+ E+ S+
Sbjct: 81 FLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSL 121
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 191 QVRKADGITKGSYQV---AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNV 247
Q+ I GS+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N+
Sbjct: 9 QITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNI 66
Query: 248 VQFVGAVT 255
+ F+G T
Sbjct: 67 LLFMGYST 74
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 201 GSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVT 255
G+ KW+G V VK+L+ + P+++ AF +E+ ++ K RH N++ F+G T
Sbjct: 38 GTVYKGKWHG-DVAVKMLNVTA-PTPQQLQAFKNEVGVLRKTRHVNILLFMGYST 90
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 77 LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R ++G +EDL+N +DVN++D G++ALH AA +V+ +LL AN D ++
Sbjct: 19 LILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 78
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR 178
T A G+ E +L A T R P +A R
Sbjct: 79 NKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 124
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 77 LFMACRGDVKG-VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 135
L +A R ++G +EDL+N +DVN++D G++ALH AA +V+ +LL AN D ++
Sbjct: 93 LILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 152
Query: 136 RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPR 178
T A G+ E +L A T R P +A R
Sbjct: 153 NKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 198
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 88 VEDLLNEGSDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST---AAA 143
+ D + +G+ + N D G TALH+AA + K LL A+ +D G T AA
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 144 DAKYYGNVEVYNIL 157
A G V+ IL
Sbjct: 64 SADAQG---VFQIL 74
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 74 MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRT-ALHIAACEGHVEVVKLLLSKKANID 132
+Q++ M G + E LL G++ N D T +H AA EG ++ + +L A +D
Sbjct: 49 IQVMMM---GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105
Query: 133 ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA-NPREVPE 182
RD WG A+ G+ +V L+A + + A P ++P+
Sbjct: 106 VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 74 MQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRT-ALHIAACEGHVEVVKLLLSKKANID 132
+Q++ M G + E LL G++ N D T +H AA EG ++ + +L A +D
Sbjct: 49 IQVMMM---GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105
Query: 133 ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA-NPREVPE 182
RD WG A+ G+ +V L+A + + A P ++P+
Sbjct: 106 VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
F HE + + +HPNVV +G VT++ P+ ++ Y
Sbjct: 59 FRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSY 93
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 211 TKVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
TKV VK+L ++ + + ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 61 TKVAVKMLKSDATE--KDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 118
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 211 TKVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
TKV VK+L ++ + + ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 61 TKVAVKMLKSDATE--KDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 118
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
F HE + + +HPNVV +G VT++ P+ ++ Y
Sbjct: 76 FRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSY 110
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 211 TKVWVKILDKE-SHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHA 268
TKV VK+L + + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +
Sbjct: 53 TKVAVKMLKSDATEKD---LSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS 109
Query: 269 K 269
K
Sbjct: 110 K 110
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 211 TKVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
TKV VK+L ++ + + ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 102 TKVAVKMLKSDATE--KDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 159
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 211 TKVWVKILDKES-HKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHA 268
TKV VK+L ++ KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +
Sbjct: 61 TKVAVKMLKSDATEKD---LSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS 117
Query: 269 K 269
K
Sbjct: 118 K 118
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 211 TKVWVKILDKE-SHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHA 268
TKV VK+L + + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +
Sbjct: 50 TKVAVKMLKSDATEKD---LSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS 106
Query: 269 K 269
K
Sbjct: 107 K 107
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 211 TKVWVKILDKES-HKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHA 268
TKV VK+L ++ KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +
Sbjct: 61 TKVAVKMLKSDATEKD---LSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS 117
Query: 269 K 269
K
Sbjct: 118 K 118
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 211 TKVWVKILDKE-SHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHA 268
TKV VK+L + + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +
Sbjct: 54 TKVAVKMLKSDATEKD---LSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS 110
Query: 269 K 269
K
Sbjct: 111 K 111
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 211 TKVWVKILDKE-SHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHA 268
TKV VK+L + + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +
Sbjct: 46 TKVAVKMLKSDATEKD---LSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS 102
Query: 269 K 269
K
Sbjct: 103 K 103
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 165 PKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSYQVAKWNG-------TKVWVKI 217
P +R P+ + EY N +E +G +Q A+ G T V VK+
Sbjct: 26 PMYQRMPLLLNPKLLSLEYPRNNIEYVRDIGEGAFGRVFQ-ARAPGLLPYEPFTMVAVKM 84
Query: 218 LDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHA 268
L +E+ D + F E ++ + +PN+V+ +G PM ++ EY A
Sbjct: 85 LKEEASADMQ--ADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMA 133
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 198 ITKGSYQVAKW-----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
I KG++ K G +V VKI+DK + +P + E+ I++ HPN+V+
Sbjct: 23 IGKGNFAKVKLARHVLTGREVAVKIIDK-TQLNPTSLQKLFREVRIMKILNHPNIVKLFE 81
Query: 253 AVTQNIPMMIVLEY 266
+ + +V+EY
Sbjct: 82 VIETEKTLYLVMEY 95
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 198 ITKGSYQVAKW-----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
I KG++ K G +V +KI+DK + +P + E+ I++ HPN+V+
Sbjct: 20 IGKGNFAKVKLARHILTGREVAIKIIDK-TQLNPTSLQKLFREVRIMKILNHPNIVKLFE 78
Query: 253 AVTQNIPMMIVLEY 266
+ + +++EY
Sbjct: 79 VIETEKTLYLIMEY 92
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E +I+ + HPN+++ G VT++ P+MIV E
Sbjct: 64 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTE 97
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E +I+ + HPN+++ G VT++ P+MIV E
Sbjct: 93 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTE 126
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 198 ITKGSYQVAKW-----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
I KG++ K G +V +KI+DK + +P + E+ I++ HPN+V+
Sbjct: 23 IGKGNFAKVKLARHILTGREVAIKIIDK-TQLNPTSLQKLFREVRIMKILNHPNIVKLFE 81
Query: 253 AVTQNIPMMIVLEY 266
+ + +++EY
Sbjct: 82 VIETEKTLYLIMEY 95
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E +I+ + HPN+++ G VT++ P+MIV E
Sbjct: 93 FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTE 126
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 187 PLELQVRKADGITKGSY-QV--AKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR 243
P E Q+ + I KG + QV +W+G +V ++++D E + +++ AF E+ + R
Sbjct: 31 PFE-QLEIGELIGKGRFGQVYHGRWHG-EVAIRLIDIERDNE-DQLKAFKREVMAYRQTR 87
Query: 244 HPNVVQFVGAV 254
H NVV F+GA
Sbjct: 88 HENVVLFMGAC 98
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 70 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 70 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIIHLLGACTQDGPLYVIVEYASK 125
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 70 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 62 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 117
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 59 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 114
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 116 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 171
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 70 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 70 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 213 VWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L ++ + E ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 70 VAVKMLKDDATE--EDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 57 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 112
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
V+ ++ G +++ DG TALH AA + +KLLL +A + + G TA A+
Sbjct: 209 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268
Query: 148 YGNVEVYNILK 158
+ E +L+
Sbjct: 269 KHHKECEELLE 279
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++EY +K
Sbjct: 70 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIITLLGACTQDGPLYVIVEYASK 125
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 76 LLFMACRGDVKGVEDLLNEGS-DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID 132
LL A + D K V+++L + + V+ +D +G T L+IA +E+ K L+ + A+I+
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 97 DVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAADAKYY--GN--- 150
D+N + G AL AA +GH++ VKLLL + +ID ++ +G TA +A GN
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157
Query: 151 VEVYNILKARGAKVP---KTKRTPMTVANPREVPE 182
++ +L GA + RT M AN + E
Sbjct: 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 88 VEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 147
V+ ++ G +++ DG TALH AA + +KLLL +A + + G TA A+
Sbjct: 190 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
Query: 148 YGNVEVYNILK 158
+ E +L+
Sbjct: 250 KHHKECEELLE 260
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 220 KESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
K + + +R++ F E I+ + H N+++ G +++ PMMI+ EY
Sbjct: 82 KAGYTEKQRVD-FLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEY 127
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 195 ADGITKGSYQVAKW----------------NGTKVWVKILDKESHKDPERINAFTHELTI 238
ADG G+YQ+ K G KV +KI++K+ + E++
Sbjct: 8 ADGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISY 67
Query: 239 VEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+ RHP++++ + +++V+EY
Sbjct: 68 LRLLRHPHIIKLYDVIKSKDEIIMVIEY 95
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 195 ADGITKGSYQVAKW----------------NGTKVWVKILDKESHKDPERINAFTHELTI 238
ADG G+YQ+ K G KV +KI++K+ + E++
Sbjct: 7 ADGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISY 66
Query: 239 VEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+ RHP++++ + +++V+EY
Sbjct: 67 LRLLRHPHIIKLYDVIKSKDEIIMVIEY 94
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 71 DSTMQLLFMACR-GDVKGVEDLLNE--GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
DS +AC G+++ V+ L + D+N I G T LH+A + EV + L+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129
Query: 128 KANIDARDRWGSTAAADAKYYGNVEVYNILKARG 161
A++ +D++ A G++++ +L G
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 102 DLDGRTALHIAACEGHVEVVKLLLSKKANI---DARDRWGSTAAADAKYYGNVEVYNILK 158
D DGR LH + E+ LLSK N+ D D G T A GN+EV L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 159 ARGAKVPKTKRTPMTV 174
R K K T V
Sbjct: 93 DRPLKPDLNKITNQGV 108
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 195 ADGITKGSYQVAKW----------------NGTKVWVKILDKESHKDPERINAFTHELTI 238
ADG G+YQ+ K G KV +KI++K+ + E++
Sbjct: 2 ADGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISY 61
Query: 239 VEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+ RHP++++ + +++V+EY
Sbjct: 62 LRLLRHPHIIKLYDVIKSKDEIIMVIEY 89
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 199 TKGSYQVAK--WNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ 256
T G +V K G KV VKIL+++ + + + E+ ++ RHP++++ ++
Sbjct: 28 TFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIST 87
Query: 257 NIPMMIVLEY 266
+ +V+EY
Sbjct: 88 PSDIFMVMEY 97
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 71 DSTMQLLFMACR-GDVKGVEDLLNE--GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
DS +AC G+++ V+ L + D+N I G T LH+A + EV + L+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129
Query: 128 KANIDARDRWGSTAAADAKYYGNVEVYNILKARG 161
A++ +D++ A G++++ +L G
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 102 DLDGRTALHIAACEGHVEVVKLLLSKKANI---DARDRWGSTAAADAKYYGNVEVYNILK 158
D DGR LH + E+ LLSK N+ D D G T A GN+EV L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 159 ARGAKVPKTKRTPMTV 174
R K K T V
Sbjct: 93 DRPLKPDLNKITNQGV 108
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 198 ITKGSYQVAKW-----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
I KG++ K G +V VKI+DK + + + E+ I++ HPN+V+
Sbjct: 22 IGKGNFAKVKLARHILTGKEVAVKIIDK-TQLNSSSLQKLFREVRIMKVLNHPNIVKLFE 80
Query: 253 AVTQNIPMMIVLEY 266
+ + +V+EY
Sbjct: 81 VIETEKTLYLVMEY 94
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 198 ITKGSYQVAKW-----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
I KG++ K G +V VKI+DK + + + E+ I++ HPN+V+
Sbjct: 22 IGKGNFAKVKLARHILTGKEVAVKIIDK-TQLNSSSLQKLFREVRIMKVLNHPNIVKLFE 80
Query: 253 AVTQNIPMMIVLEY 266
+ + +V+EY
Sbjct: 81 VIETEKTLYLVMEY 94
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 198 ITKGSYQVAKW-----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
I KG++ K G +V VKI+DK + + + E+ I++ HPN+V+
Sbjct: 22 IGKGNFAKVKLARHILTGKEVAVKIIDK-TQLNSSSLQKLFREVRIMKVLNHPNIVKLFE 80
Query: 253 AVTQNIPMMIVLEY 266
+ + +V+EY
Sbjct: 81 VIETEKTLYLVMEY 94
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 71 DSTMQLLFMACR-GDVKGVEDLLNE--GSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
DS +AC G+++ V+ L + D+N I G T LH+A + EV + L+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129
Query: 128 KANIDARDRWGSTAAADAKYYGNVEVYNILKARG 161
A++ +D++ A G++++ +L G
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 102 DLDGRTALHIAACEGHVEVVKLLLSKKANI---DARDRWGSTAAADAKYYGNVEVYNILK 158
D DGR LH + E+ LLSK N+ D D G T A GN+EV L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 159 ARGAKVPKTKRTPMTV 174
R K K T V
Sbjct: 93 DRPLKPDLNKITNQGV 108
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT+ MIV EY S+
Sbjct: 97 FLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSL 137
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
F E +I+ + HPN+++ G VT+ MIV EY S+
Sbjct: 97 FLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSL 137
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
N V +K + + E+ E+ ++K RHPN +Q+ G + +V+EY
Sbjct: 78 NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY 135
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 198 ITKGSYQVAKW-----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
I KG++ K G +V VKI+DK + + + E+ I++ HPN+V+
Sbjct: 15 IGKGNFAKVKLARHILTGKEVAVKIIDK-TQLNSSSLQKLFREVRIMKVLNHPNIVKLFE 73
Query: 253 AVTQNIPMMIVLEY 266
+ + +V+EY
Sbjct: 74 VIETEKTLYLVMEY 87
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+ G KV VKIL+++ + + + E+ ++ RHP++++ ++ +V+EY
Sbjct: 33 QLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEY 92
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 207 KWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
+ G KV VKIL+++ + + + E+ ++ RHP++++ ++ +V+EY
Sbjct: 33 QLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEY 92
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 209 NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
N V +K + + E+ E+ ++K RHPN +Q+ G + +V+EY
Sbjct: 39 NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY 96
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
F E ++ +H ++V+F G T+ P+++V EY
Sbjct: 90 FQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEY 124
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 181 PEYELNPLELQVRKADGITK-GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTI 238
PE+E+ L++ + G + G + +NG TKV VK L K+ P +AF E +
Sbjct: 2 PEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANL 57
Query: 239 VEKARHPNVVQFVGAVTQNIPMMIVLEYHAKVSM 272
+++ +H +V+ VTQ P+ I+ EY S+
Sbjct: 58 MKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSL 90
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
F E ++ +H ++V+F G T+ P+++V EY
Sbjct: 61 FQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEY 95
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
F E ++ +H ++V+F G T+ P+++V EY
Sbjct: 67 FQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEY 101
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 198 ITKGSYQVAKW-----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
I KG++ K G +V V+I+DK + + + E+ I++ HPN+V+
Sbjct: 22 IGKGNFAKVKLARHILTGKEVAVRIIDK-TQLNSSSLQKLFREVRIMKVLNHPNIVKLFE 80
Query: 253 AVTQNIPMMIVLEY 266
+ + +V+EY
Sbjct: 81 VIETEKTLYLVMEY 94
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 198 ITKGSYQVAKW-----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
I KG++ K G +V V+I+DK + + + E+ I++ HPN+V+
Sbjct: 22 IGKGNFAKVKLARHILTGKEVAVRIIDK-TQLNSSSLQKLFREVRIMKVLNHPNIVKLFE 80
Query: 253 AVTQNIPMMIVLEY 266
+ + +V+EY
Sbjct: 81 VIETEKTLYLVMEY 94
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++ Y +K
Sbjct: 70 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVAYASK 125
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 210 GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
G K+ KI+ KD E + +E++++ + H N++Q A +++V+EY
Sbjct: 114 GLKLAAKIIKTRGMKDKEEVK---NEISVMNQLDHANLIQLYDAFESKNDIVLVMEY 167
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 213 VWVKIL-DKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEYHAK 269
V VK+L D + KD ++ E+ +++ +H N++ +GA TQ+ P+ +++ Y +K
Sbjct: 70 VAVKMLKDDATEKD---LSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVGYASK 125
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 105 GRTALHIAACEGHVEVVKLLLS---KKANIDARDRWGST 140
G L +AAC + +VK LL + A+I ARD G+T
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 190 LQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQ 249
QVRK G G K KV K + + KD A E I+E+ +HP +V
Sbjct: 34 FQVRKVTGANTG-----KIFAMKVLKKAMIVRNAKDTAHTKA---ERNILEEVKHPFIVD 85
Query: 250 FVGAVTQNIPMMIVLEY 266
+ A + ++LEY
Sbjct: 86 LIYAFQTGGKLYLILEY 102
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 198 ITKGSY-----QVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
+ +GSY + K G V +K + ES + E++I+++ P+VV++ G
Sbjct: 37 LGEGSYGSVYKAIHKETGQIVAIKQVPVESD-----LQEIIKEISIMQQCDSPHVVKYYG 91
Query: 253 AVTQNIPMMIVLEY 266
+ +N + IV+EY
Sbjct: 92 SYFKNTDLWIVMEY 105
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 190 LQVRKADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQ 249
QVRK G G K KV K + + KD A E I+E+ +HP +V
Sbjct: 34 FQVRKVTGANTG-----KIFAMKVLKKAMIVRNAKDTAHTKA---ERNILEEVKHPFIVD 85
Query: 250 FVGAVTQNIPMMIVLEY 266
+ A + ++LEY
Sbjct: 86 LIYAFQTGGKLYLILEY 102
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 22 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 76
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 77 IYIITEYMENGSL 89
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 225 DPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
D E F E+ ++ HPNV++F+G + ++ + + EY
Sbjct: 47 DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 195 ADGITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGA 253
A GI+K + +V VK+L KE ER A EL ++ + H N+V +GA
Sbjct: 66 AYGISKTGVSI------QVAVKML-KEKADSSER-EALMSELKMMTQLGSHENIVNLLGA 117
Query: 254 VTQNIPMMIVLEY 266
T + P+ ++ EY
Sbjct: 118 CTLSGPIYLIFEY 130
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 105 GRTALHIAACEGHVEVVKLLLSKKANIDAR--DRWGSTAAADAKYYGNV 151
G +ALHIA + ++ VKLL+ AN+ AR R+ Y+G +
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGEL 143
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 99 NSIDLD-----GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK 146
NS +LD G TALH + E +KLLL KA+I+ + G T AK
Sbjct: 194 NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 35 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 89
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 90 IYIITEYMENGSL 102
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 27 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 81
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 82 IYIITEYMENGSL 94
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 27 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 81
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 82 IYIITEYMENGSL 94
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 36 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 90
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 91 IYIITEYMENGSL 103
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 27 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 81
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 82 IYIITEYMENGSL 94
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 33 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 87
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 88 IYIITEYMENGSL 100
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 28 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 82
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 83 IYIITEYMENGSL 95
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 63 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 95
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 27 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 81
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 82 IYIITEYMENGSL 94
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 198 ITKGSYQVAKW-----NGTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVG 252
I KG++ K G +V VKI+DK + + + E+ I + HPN+V+
Sbjct: 22 IGKGNFAKVKLARHILTGKEVAVKIIDK-TQLNSSSLQKLFREVRIXKVLNHPNIVKLFE 80
Query: 253 AVTQNIPMMIVLEY 266
+ + +V EY
Sbjct: 81 VIETEKTLYLVXEY 94
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 61 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 93
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 33 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 87
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 88 IYIITEYMENGSL 100
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 32 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 86
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 87 IYIITEYMENGSL 99
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 29 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 83
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 84 IYIITEYMENGSL 96
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 60 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 92
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 201 GSYQVAKWNG-TKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIP 259
G + +NG TKV VK L K+ P +AF E ++++ +H +V+ VTQ P
Sbjct: 37 GEVWMGYYNGHTKVAVKSL-KQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVVTQE-P 91
Query: 260 MMIVLEYHAKVSM 272
+ I+ EY S+
Sbjct: 92 IYIITEYMENGSL 104
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 58 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 90
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 58 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 90
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 72 STMQLLFMACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 131
S L A RG V+ V LL G+D N+++ GR + + G +V +LLL A
Sbjct: 12 SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP 70
Query: 132 DARDRWGST-AAADAKYYGNVEVYNILKARGAKV 164
+ D T DA G ++ +L GA++
Sbjct: 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 86 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 118
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 235 ELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
E+ ++ +HPN+VQ+ + +N + IV++Y
Sbjct: 73 EVAVLANMKHPNIVQYRESFEENGSLYIVMDY 104
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 55 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 87
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 58 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 90
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 58 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 90
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 80 ACRGDVKGVEDLLNEGSDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 127
A D K V+ LL G D + D G TAL+ A G+ + VKL + K
Sbjct: 70 ATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKK 117
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 438 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 470
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
F E + + HP++V+ +G +T+N P+ I++E
Sbjct: 438 FLQEALTMRQFDHPHIVKLIGVITEN-PVWIIME 470
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 213 VWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ--NIPMMIVLEY 266
VW K LD S + E+ E+ ++ + +HPN+V++ + N + IV+EY
Sbjct: 35 VW-KELDYGSMTEAEK-QMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEY 88
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 213 VWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ--NIPMMIVLEY 266
VW K LD S + E+ E+ ++ + +HPN+V++ + N + IV+EY
Sbjct: 35 VW-KELDYGSMTEAEK-QMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEY 88
>pdb|3K3W|B Chain B, Thermostable Penicillin G Acylase From Alcaligenes
Faecalis In Orthorhombic Form
pdb|3ML0|B Chain B, Thermostable Penicillin G Acylase From Alcaligenes
Faecalis In Tetragonal Form
Length = 551
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 210 GTKVWVKILDKESHKDPERINAF 232
GTKV ++ L E+H DP+R+N F
Sbjct: 388 GTKVLLRALVLEAHPDPKRVNVF 410
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 213 VWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQ--NIPMMIVLEY 266
VW K LD S + E+ E+ ++ + +HPN+V++ + N + IV+EY
Sbjct: 35 VW-KELDYGSMTEAEK-QMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEY 88
>pdb|2XUM|S Chain S, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 20
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 117 HVEVVKLLLSKKANIDARDR 136
H+EVVKLLL A++DA+D+
Sbjct: 1 HLEVVKLLLEHGADVDAQDK 20
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 161 GAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKGSY-QVAKWNGTK------V 213
GA K K P +P P + N ++ Q D I +G++ QV K K
Sbjct: 1 GALNRKVKNNP----DPTIYPVLDWNDIKFQ----DVIGEGNFGQVLKARIKKDGLRMDA 52
Query: 214 WVKILDKESHKDPERINAFTHELTIVEK-ARHPNVVQFVGAVTQNIPMMIVLEY 266
+K + + + KD R F EL ++ K HPN++ +GA + + +EY
Sbjct: 53 AIKRMKEYASKDDHR--DFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEY 104
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 210 GTKVWVKILDKESHKDPERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
G KV +KI++K+ + E++ + RHP++++ + +++V+EY
Sbjct: 29 GQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY 85
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 188 LELQVRKADG----ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR 243
L L + DG + +G + V VK L + PE ++ F E+ +
Sbjct: 20 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 79
Query: 244 HPNVVQFVGAVTQNIPMMIVLE 265
H N+++ G V PM +V E
Sbjct: 80 HRNLIRLYGVVL-TPPMKMVTE 100
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 232 FTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLEY 266
F E ++ +H ++V+F G + P+++V EY
Sbjct: 62 FHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEY 96
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 188 LELQVRKADG----ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR 243
L L + DG + +G + V VK L + PE ++ F E+ +
Sbjct: 20 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 79
Query: 244 HPNVVQFVGAVTQNIPMMIVLE 265
H N+++ G V PM +V E
Sbjct: 80 HRNLIRLYGVVL-TPPMKMVTE 100
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 189 ELQVRKADGITKGSYQVAK---WNG-----TKVWVKILDKESHKDPERINAFTHELTIVE 240
E +R + + GS+ V + W+ V VK L + PE ++ F E+ +
Sbjct: 11 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMH 70
Query: 241 KARHPNVVQFVGAVTQNIPMMIVLE 265
H N+++ G V PM +V E
Sbjct: 71 SLDHRNLIRLYGVVL-TPPMKMVTE 94
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 189 ELQVRKADGITKGSYQVAK---WNG-----TKVWVKILDKESHKDPERINAFTHELTIVE 240
E +R + + GS+ V + W+ V VK L + PE ++ F E+ +
Sbjct: 7 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMH 66
Query: 241 KARHPNVVQFVGAVTQNIPMMIVLE 265
H N+++ G V PM +V E
Sbjct: 67 SLDHRNLIRLYGVVLTP-PMKMVTE 90
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 189 ELQVRKADGITKGSYQVAK---WNG-----TKVWVKILDKESHKDPERINAFTHELTIVE 240
E +R + + GS+ V + W+ V VK L + PE ++ F E+ +
Sbjct: 7 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMH 66
Query: 241 KARHPNVVQFVGAVTQNIPMMIVLE 265
H N+++ G V PM +V E
Sbjct: 67 SLDHRNLIRLYGVVLTP-PMKMVTE 90
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 189 ELQVRKADGITKGSYQVAK---WNG-----TKVWVKILDKESHKDPERINAFTHELTIVE 240
E +R + + GS+ V + W+ V VK L + PE ++ F E+ +
Sbjct: 7 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMH 66
Query: 241 KARHPNVVQFVGAVTQNIPMMIVLE 265
H N+++ G V PM +V E
Sbjct: 67 SLDHRNLIRLYGVVLTP-PMKMVTE 90
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 188 LELQVRKADG----ITKGSYQVAKWNGTKVWVKILDKESHKDPERINAFTHELTIVEKAR 243
L L + DG + +G + V VK L + PE ++ F E+ +
Sbjct: 14 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 73
Query: 244 HPNVVQFVGAVTQNIPMMIVLE 265
H N+++ G V PM +V E
Sbjct: 74 HRNLIRLYGVVL-TPPMKMVTE 94
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 227 ERINAFTHELTIVEKARHPNVVQFVGAVTQNIPMMIVLE 265
E ++ F E+ I++ HPN+++ N + +V+E
Sbjct: 65 EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME 103
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 201 GSYQVAKWNGTKVWVKILDKESHKDP----ERINAFTHELTIVEKARHPNVVQFVGAVTQ 256
G ++A GT++ + + K P E ++ F E+ I++ HPN+++
Sbjct: 23 GEVKIAVQKGTRI-----RRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFED 77
Query: 257 NIPMMIVLE 265
N + +V+E
Sbjct: 78 NTDIYLVME 86
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 185 LNPLELQVRKADGITKGSY-QVAKW--NGTK--VWVKILDKESHKDPERINAFTHELTIV 239
++P EL K D I KGS+ +V K N TK V +KI+D E + + I E+T++
Sbjct: 15 VDPEEL-FTKLDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAE--DEIEDIQQEITVL 71
Query: 240 EKARHPNVVQFVGAVTQNIPMMIVLEY 266
+ P + ++ G+ ++ + I++EY
Sbjct: 72 SQCDSPYITRYFGSYLKSTKLWIIMEY 98
>pdb|1XG7|A Chain A, Conserved Hypothetical Protein Pfu-877259-001 From
Pyrococcus Furiosus
pdb|1XG7|B Chain B, Conserved Hypothetical Protein Pfu-877259-001 From
Pyrococcus Furiosus
Length = 250
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 145 AKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGI 198
A+Y+ EV +I KA G +PK+K N R + E +LN ++RK +G
Sbjct: 76 ARYFSGREVDSIWKAYGEFLPKSK-------NNRRLIEAKLN----RIRKVEGF 118
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 193 RKADGITKGSYQVA-----KWNGTKVWVKI--LDKESHKDPERINAFTHELTIVEKARHP 245
+K + I +G+Y V K G V +K LD E+ P + E++++++ HP
Sbjct: 7 QKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVP---STAIREISLLKELNHP 63
Query: 246 NVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLS 281
N+V+ + + + +V E+ +SM + F+ S
Sbjct: 64 NIVKLLDVIHTENKLYLVFEF---LSMDLKKFMDAS 96
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 193 RKADGITKGSYQVA-----KWNGTKVWVKI--LDKESHKDPERINAFTHELTIVEKARHP 245
+K + I +G+Y V K G V +K LD E+ P + E++++++ HP
Sbjct: 8 QKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVP---STAIREISLLKELNHP 64
Query: 246 NVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLS 281
N+V+ + + + +V E+ +SM + F+ S
Sbjct: 65 NIVKLLDVIHTENKLYLVFEF---LSMDLKDFMDAS 97
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 184 ELNPLELQVRKADGITK-GSYQVAKWNGTKVWVKILDKESHKD-PERINAFTHELTIVEK 241
E++ EL + + GI G A W G +V VK + +D + I E +
Sbjct: 3 EIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAM 62
Query: 242 ARHPNVVQFVGAVTQNIPMMIVLEY 266
+HPN++ G + + +V+E+
Sbjct: 63 LKHPNIIALRGVCLKEPNLCLVMEF 87
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 193 RKADGITKGSYQVA-----KWNGTKVWVKI--LDKESHKDPERINAFTHELTIVEKARHP 245
+K + I +G+Y V K G V +K LD E+ P + E++++++ HP
Sbjct: 9 QKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVP---STAIREISLLKELNHP 65
Query: 246 NVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLS 281
N+V+ + + + +V E+ +SM + F+ S
Sbjct: 66 NIVKLLDVIHTENKLYLVFEF---LSMDLKKFMDAS 98
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 193 RKADGITKGSYQVA-----KWNGTKVWVKI--LDKESHKDPERINAFTHELTIVEKARHP 245
+K + I +G+Y V K G V +K LD E+ P + E++++++ HP
Sbjct: 9 QKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVP---STAIREISLLKELNHP 65
Query: 246 NVVQFVGAVTQNIPMMIVLEYHAKVSMPITPFLTLS 281
N+V+ + + + +V E+ +SM + F+ S
Sbjct: 66 NIVKLLDVIHTENKLYLVFEF---LSMDLKDFMDAS 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,471,014
Number of Sequences: 62578
Number of extensions: 340518
Number of successful extensions: 1581
Number of sequences better than 100.0: 310
Number of HSP's better than 100.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 512
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)