BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022606
         (294 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WM5|A Chain A, Crystal Structure Of The N-Terminal Tpr Domain (1-203) Of
           P67phox
          Length = 208

 Score = 31.6 bits (70), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 19/93 (20%)

Query: 143 MTSAAESITESLRRTRQLMVQEVERNASTLMT--FDESTGVLRKAESEYKGHRSLLMRTR 200
           MT A ++ T S+ R + L V   +R      T  +D +   L++A  + +G++       
Sbjct: 58  MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ------- 110

Query: 201 NLLSTMQRQDIIDRVILVLGLILFSCAVLYVVS 233
                     +ID  IL L   LF+C VLY ++
Sbjct: 111 ----------LIDYKILGLQFKLFACEVLYNIA 133


>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
          Length = 203

 Score = 31.6 bits (70), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 19/93 (20%)

Query: 143 MTSAAESITESLRRTRQLMVQEVERNASTLMT--FDESTGVLRKAESEYKGHRSLLMRTR 200
           MT A ++ T S+ R + L V   +R      T  +D +   L++A  + +G++       
Sbjct: 53  MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ------- 105

Query: 201 NLLSTMQRQDIIDRVILVLGLILFSCAVLYVVS 233
                     +ID  IL L   LF+C VLY ++
Sbjct: 106 ----------LIDYKILGLQFKLFACEVLYNIA 128


>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
           Angstrom Resolution And Biochemical Characterizations Of
           The A128v Mutant Implicated In Chronic Granulomatous
           Disease
          Length = 213

 Score = 31.6 bits (70), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 19/93 (20%)

Query: 143 MTSAAESITESLRRTRQLMVQEVERNASTLMT--FDESTGVLRKAESEYKGHRSLLMRTR 200
           MT A ++ T S+ R + L V   +R      T  +D +   L++A  + +G++       
Sbjct: 53  MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ------- 105

Query: 201 NLLSTMQRQDIIDRVILVLGLILFSCAVLYVVS 233
                     +ID  IL L   LF+C VLY ++
Sbjct: 106 ----------LIDYKILGLQFKLFACEVLYNIA 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.128    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,141,504
Number of Sequences: 62578
Number of extensions: 140118
Number of successful extensions: 333
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 4
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)