BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022606
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6QD59|SEC20_MOUSE Vesicle transport protein SEC20 OS=Mus musculus GN=Bnip1 PE=2 SV=1
Length = 228
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
Query: 100 SLRNANLQAK---ANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRR 156
S R ANL K N+ KA ELL GG ++R+R TK + + SITESL
Sbjct: 94 SWRKANLTCKLAIDNLEKA-----ELLQGGD---SLRQRKT-TKESLAQTSSSITESLMG 144
Query: 157 TRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVI 216
++M Q+V+++ + T S+ L A E+K + R L++ R+++ D+++
Sbjct: 145 ISRMMSQQVQQSEEAMQTLVSSSRTLLDANEEFKSMSGTIQLGRKLITKYNRRELTDKLL 204
Query: 217 LVLGLILFSCAVLYVVSKRI 236
+ L L LF VLY+V KR+
Sbjct: 205 IFLALALFLATVLYIVKKRL 224
>sp|Q8VHI8|SEC20_RAT Vesicle transport protein SEC20 OS=Rattus norvegicus GN=Bnip1 PE=2
SV=1
Length = 228
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
Query: 100 SLRNANLQAK---ANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRR 156
S R ANL K N+ KA ELL GG ++R+R TK + + +ITESL
Sbjct: 94 SWRKANLTCKLAIDNLEKA-----ELLQGGD---SLRQRKT-TKESLAQTSSTITESLMG 144
Query: 157 TRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVI 216
++M Q+V+++ + T S+ L A E+K + R L++ R+++ D+++
Sbjct: 145 ISRMMSQQVQQSEEAMQTLVSSSRTLLDANEEFKSMSGTIQLGRKLITKYNRRELTDKLL 204
Query: 217 LVLGLILFSCAVLYVVSKRI 236
+ L L LF VLY+V KR+
Sbjct: 205 IFLALALFLATVLYIVKKRL 224
>sp|Q12981|SEC20_HUMAN Vesicle transport protein SEC20 OS=Homo sapiens GN=BNIP1 PE=1 SV=3
Length = 228
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 12/140 (8%)
Query: 100 SLRNANLQAKA---NMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRR 156
S R ANL K N+ KA ELL GG + R+ TK + + +ITESL
Sbjct: 94 SWRKANLTCKIAIDNLEKA-----ELLQGGD----LLRQRKTTKESLAQTSSTITESLMG 144
Query: 157 TRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVI 216
++M Q+V+++ + + S+ + A E+K + R L++ R+++ D+++
Sbjct: 145 ISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRRELTDKLL 204
Query: 217 LVLGLILFSCAVLYVVSKRI 236
+ L L LF VLY+V KR+
Sbjct: 205 IFLALALFLATVLYIVKKRL 224
>sp|O42852|SEC20_SCHPO Protein transport protein sec20 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec20 PE=1 SV=1
Length = 226
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 143 MTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNL 202
+TSA++ +T ++R MVQ V+ +A M ST +L + +Y G +L ++ +
Sbjct: 121 LTSASQ-VTAAMRDIHAQMVQAVDMSAENAMELSSSTNLLETLQEKYFGVEDVLYTSKRI 179
Query: 203 LSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRI 236
+ +++ D D ++V G F V+Y++ KRI
Sbjct: 180 IKSLKLSDRSDYFLVVSGFGFFIFVVVYLLFKRI 213
>sp|P11046|LAMB1_DROME Laminin subunit beta-1 OS=Drosophila melanogaster GN=LanB1 PE=1 SV=4
Length = 1788
Score = 35.4 bits (80), Expect = 0.46, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 9 EKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLD 68
EKA K D A + ++ A E+ GK+++ ++++++++ LA L ++ +
Sbjct: 1585 EKADKILDSANSVVESLAAADESQGKAKDAIQQANSNIE----LAGQDLEKIDE-----E 1635
Query: 69 LLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGE 128
+ + P ++ Q + L + +K NN+ + R+ AK ++A + E + GE
Sbjct: 1636 TYSAEAPANNTAQQVEKLAKKVQKLQNNIMKNDRD----AKEITKEAGSVKLEAMRARGE 1691
Query: 129 ESTIRRRNLQTKAGMTSAAESITESLRRTRQLM 161
+ ++ T +T A + R +QL+
Sbjct: 1692 ANNLQSATSATNQTLTDRASRSENARERAKQLL 1724
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1
SV=1
Length = 3672
Score = 34.7 bits (78), Expect = 0.77, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 1 MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLL 60
+DE V+ VEK K E D +T+A I I GK+ E EK+++ A +G+ L
Sbjct: 2585 IDEKVQEVEKLKAEIDANIEETRAKISEIA--GKAEEITEKANS--------AMEGIRLA 2634
Query: 61 NSLHLKLDLLAP 72
++L+ LAP
Sbjct: 2635 RRNSVQLNKLAP 2646
>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2 SV=2
Length = 1639
Score = 33.1 bits (74), Expect = 2.8, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 24/157 (15%)
Query: 3 EVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNS 62
E +E +E+AK D+A KA+E + +E ++N+ ++L G D S
Sbjct: 1364 EDIELLERAKAAHDKA-------TKAVEQGDNTLKE---ANNTYEKLAGFQSDVQRSSES 1413
Query: 63 LHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKA------- 115
L + P + ++Q+A+SL+ ++ + +NAN +AK N ++A
Sbjct: 1414 AEKALQTV-PNI--EKEIQNAESLISQAEEALDGAN---KNAN-EAKKNAQEAQLKYAEQ 1466
Query: 116 AQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITE 152
A ++ EL+ E+ + RNL+ +A + +TE
Sbjct: 1467 ASKDAELIRRKANETKVAARNLREEADQLNHRVKLTE 1503
>sp|Q2GCZ0|SYH_NEOSM Histidine--tRNA ligase OS=Neorickettsia sennetsu (strain Miyayama)
GN=hisS PE=3 SV=1
Length = 413
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 67 LDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQA--------KANMRKAAQE 118
+D++ PTSD++ S + + ++E L LR+ L A K+ M++A +
Sbjct: 311 IDIMPVLAPTSDKIVSIVPIGEIAEREALKLLFYLRSEGLCADMCYGLSVKSRMKRAERS 370
Query: 119 ERELLLGGGE----ESTIRRRNLQTKAGMTSAAESITESLR 155
++LG E EST+ R ++T MT A E + +LR
Sbjct: 371 TVTVILGEEEFSRGESTV--RIMETGQQMTVAHEKLLSTLR 409
>sp|P95078|PKNK_MYCTU Serine/threonine-protein kinase PknK OS=Mycobacterium tuberculosis
GN=pknK PE=1 SV=2
Length = 1110
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 241 LQRQVTAAIKAGMARQPEIRPGAAED-GVNLAQVYRDNAAPNMEVPL 286
L V AAI+ MAR P RP A D G L V R N E+PL
Sbjct: 252 LPADVAAAIERAMARHPADRPATAADVGEELRDVQRRNGVSVDEMPL 298
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,486,273
Number of Sequences: 539616
Number of extensions: 3330180
Number of successful extensions: 12109
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 11993
Number of HSP's gapped (non-prelim): 368
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)