Query 022606
Match_columns 294
No_of_seqs 180 out of 378
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:49:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666 V-SNARE [Intracellular 100.0 2.8E-31 6.1E-36 232.8 24.0 213 4-236 1-219 (220)
2 KOG3251 Golgi SNAP receptor co 100.0 4.2E-26 9.1E-31 201.1 23.7 206 17-233 3-209 (213)
3 PF03908 Sec20: Sec20; InterP 99.9 3.9E-24 8.5E-29 167.9 12.3 91 146-236 2-92 (92)
4 KOG3208 SNARE protein GS28 [In 99.3 1.4E-09 3.1E-14 96.7 21.3 208 5-224 4-221 (231)
5 PF12352 V-SNARE_C: Snare regi 99.0 4.5E-09 9.8E-14 77.1 9.0 63 148-210 4-66 (66)
6 PF05008 V-SNARE: Vesicle tran 98.7 2.5E-07 5.5E-12 70.1 10.8 79 15-103 1-79 (79)
7 KOG0812 SNARE protein SED5/Syn 97.1 0.25 5.4E-06 46.3 24.6 179 43-223 78-298 (311)
8 PF09753 Use1: Membrane fusion 97.0 0.17 3.7E-06 46.4 20.1 75 144-220 158-233 (251)
9 KOG3385 V-SNARE [Intracellular 96.5 0.014 3.1E-07 47.5 7.9 66 167-235 51-116 (118)
10 KOG3202 SNARE protein TLG1/Syn 96.5 0.64 1.4E-05 42.6 22.5 183 11-210 11-210 (235)
11 PF00957 Synaptobrevin: Synapt 95.7 0.54 1.2E-05 36.1 12.8 42 150-192 8-53 (89)
12 KOG0810 SNARE protein Syntaxin 95.2 2.9 6.3E-05 39.7 26.5 82 151-232 205-289 (297)
13 KOG0809 SNARE protein TLG2/Syn 95.1 3.2 6.9E-05 39.2 20.7 203 15-223 66-289 (305)
14 PF00957 Synaptobrevin: Synapt 94.9 0.79 1.7E-05 35.1 11.5 81 152-232 3-83 (89)
15 KOG0860 Synaptobrevin/VAMP-lik 91.7 5.5 0.00012 32.6 11.7 71 151-227 28-108 (116)
16 KOG2129 Uncharacterized conser 90.5 20 0.00043 35.7 18.3 83 81-191 249-331 (552)
17 PRK10884 SH3 domain-containing 89.6 8 0.00017 34.8 12.1 31 202-233 161-191 (206)
18 COG5074 t-SNARE complex subuni 87.3 24 0.00052 32.5 21.8 88 151-239 184-275 (280)
19 KOG2678 Predicted membrane pro 85.9 28 0.0006 31.8 17.6 96 142-237 144-240 (244)
20 KOG1666 V-SNARE [Intracellular 85.9 27 0.00058 31.7 17.0 18 81-98 75-92 (220)
21 PF12273 RCR: Chitin synthesis 84.9 0.58 1.3E-05 38.7 1.9 14 214-227 1-14 (130)
22 KOG0811 SNARE protein PEP12/VA 82.9 42 0.0009 31.5 27.7 62 41-106 55-116 (269)
23 TIGR00383 corA magnesium Mg(2+ 81.7 45 0.00098 31.1 16.2 48 52-103 146-193 (318)
24 KOG3894 SNARE protein Syntaxin 81.7 21 0.00046 34.1 11.1 86 148-233 228-313 (316)
25 PF09889 DUF2116: Uncharacteri 80.5 5.3 0.00012 28.8 5.2 34 200-233 25-58 (59)
26 PF09753 Use1: Membrane fusion 78.3 26 0.00056 32.1 10.4 38 56-94 32-69 (251)
27 PF06008 Laminin_I: Laminin Do 76.9 61 0.0013 29.8 21.2 66 7-72 46-115 (264)
28 PF14937 DUF4500: Domain of un 75.2 3.4 7.4E-05 32.0 3.1 32 210-241 33-64 (86)
29 PF05546 She9_MDM33: She9 / Md 75.1 64 0.0014 29.1 22.9 49 80-128 34-84 (207)
30 PF10661 EssA: WXG100 protein 75.0 3.8 8.2E-05 34.9 3.7 24 214-237 120-144 (145)
31 PF01540 Lipoprotein_7: Adhesi 75.0 44 0.00096 31.4 10.8 83 7-101 211-293 (353)
32 KOG3065 SNAP-25 (synaptosome-a 72.0 20 0.00044 33.6 8.0 58 151-208 78-135 (273)
33 KOG0994 Extracellular matrix g 71.8 1.8E+02 0.004 33.0 21.7 65 145-209 1563-1627(1758)
34 PF10498 IFT57: Intra-flagella 71.3 76 0.0017 31.0 12.1 55 145-200 301-355 (359)
35 COG3883 Uncharacterized protei 70.9 93 0.002 29.2 12.8 47 57-105 47-93 (265)
36 PF03962 Mnd1: Mnd1 family; I 68.3 45 0.00097 29.4 9.1 65 41-105 66-130 (188)
37 PF04678 DUF607: Protein of un 67.7 55 0.0012 28.5 9.5 28 214-243 92-119 (180)
38 PF13801 Metal_resist: Heavy-m 66.6 57 0.0012 25.1 8.8 73 4-80 50-123 (125)
39 PF07851 TMPIT: TMPIT-like pro 66.4 57 0.0012 31.5 9.9 19 84-102 67-85 (330)
40 smart00397 t_SNARE Helical reg 66.0 40 0.00088 23.2 7.8 55 150-204 10-64 (66)
41 PF07234 DUF1426: Protein of u 65.8 14 0.00029 29.6 4.6 29 214-242 13-41 (117)
42 PF11395 DUF2873: Protein of u 61.9 16 0.00034 24.0 3.6 23 212-234 7-29 (43)
43 PF09177 Syntaxin-6_N: Syntaxi 61.9 73 0.0016 24.7 8.8 55 49-103 6-64 (97)
44 PF04639 Baculo_E56: Baculovir 61.4 3.2 6.9E-05 39.1 0.5 24 214-237 279-302 (305)
45 PF12273 RCR: Chitin synthesis 59.8 11 0.00024 31.0 3.5 22 215-236 6-27 (130)
46 PRK13454 F0F1 ATP synthase sub 58.4 16 0.00035 31.8 4.4 21 225-245 40-60 (181)
47 PF10779 XhlA: Haemolysin XhlA 58.2 72 0.0016 23.4 9.8 23 211-233 48-70 (71)
48 KOG0862 Synaptobrevin/VAMP-lik 58.1 1.4E+02 0.003 27.2 10.2 61 149-216 138-198 (216)
49 PRK09546 zntB zinc transporter 57.5 1.7E+02 0.0037 27.5 20.9 51 48-103 150-200 (324)
50 TIGR03779 Bac_Flav_CT_M Bacter 57.4 6.2 0.00014 39.1 1.8 25 210-234 3-27 (410)
51 COG5200 LUC7 U1 snRNP componen 57.3 1.4E+02 0.0031 27.2 10.1 65 9-73 78-143 (258)
52 PRK05759 F0F1 ATP synthase sub 57.1 19 0.00042 30.1 4.6 30 213-245 4-33 (156)
53 PF12128 DUF3584: Protein of u 56.7 3.4E+02 0.0074 30.7 19.1 19 179-197 517-535 (1201)
54 PF10883 DUF2681: Protein of u 56.4 16 0.00035 28.4 3.6 22 217-238 6-27 (87)
55 COG5415 Predicted integral mem 56.0 70 0.0015 29.1 7.9 8 165-172 24-31 (251)
56 PRK14156 heat shock protein Gr 53.7 1.1E+02 0.0023 26.9 8.7 44 65-108 21-64 (177)
57 PF04277 OAD_gamma: Oxaloaceta 53.1 22 0.00047 26.4 3.8 24 216-239 9-32 (79)
58 PF05739 SNARE: SNARE domain; 52.7 76 0.0016 22.0 9.5 59 152-210 4-62 (63)
59 PF05335 DUF745: Protein of un 51.3 1.8E+02 0.0038 25.8 13.3 107 6-112 67-178 (188)
60 cd02682 MIT_AAA_Arch MIT: doma 51.3 56 0.0012 24.7 5.7 51 51-101 20-70 (75)
61 cd01324 cbb3_Oxidase_CcoQ Cyto 51.1 17 0.00036 25.0 2.6 26 209-234 8-33 (48)
62 PF06387 Calcyon: D1 dopamine 51.1 11 0.00023 33.1 2.0 32 206-238 78-109 (186)
63 PRK14475 F0F1 ATP synthase sub 50.7 27 0.00058 29.9 4.4 29 216-245 11-39 (167)
64 cd02683 MIT_1 MIT: domain cont 50.5 94 0.002 23.3 6.9 53 51-103 20-72 (77)
65 PRK10132 hypothetical protein; 50.2 1.3E+02 0.0029 24.2 11.3 55 181-235 53-107 (108)
66 smart00503 SynN Syntaxin N-ter 50.2 1.2E+02 0.0026 23.6 13.9 63 42-105 44-109 (117)
67 PHA02902 putative IMV membrane 50.0 27 0.00059 25.7 3.6 24 213-236 4-27 (70)
68 PF10669 Phage_Gp23: Protein g 49.9 44 0.00096 26.7 5.1 35 214-250 15-49 (121)
69 PF07106 TBPIP: Tat binding pr 49.6 1.6E+02 0.0035 25.0 12.7 82 7-94 80-161 (169)
70 KOG0804 Cytoplasmic Zn-finger 49.4 3E+02 0.0064 27.9 14.3 23 83-105 408-430 (493)
71 PF11657 Activator-TraM: Trans 49.4 1.7E+02 0.0036 25.0 10.6 38 192-232 104-141 (144)
72 COG4985 ABC-type phosphate tra 49.1 86 0.0019 29.0 7.5 16 17-32 161-176 (289)
73 COG0598 CorA Mg2+ and Co2+ tra 48.6 2.4E+02 0.0052 26.6 19.7 56 44-103 143-198 (322)
74 PF12911 OppC_N: N-terminal TM 48.4 22 0.00048 24.4 3.0 32 201-232 3-34 (56)
75 PF05103 DivIVA: DivIVA protei 48.0 35 0.00076 27.5 4.6 65 2-73 21-85 (131)
76 PF10211 Ax_dynein_light: Axon 47.9 1.9E+02 0.0042 25.4 10.8 8 8-15 97-104 (189)
77 cd07598 BAR_FAM92 The Bin/Amph 47.2 2.1E+02 0.0046 25.6 18.3 100 4-107 9-112 (211)
78 cd02678 MIT_VPS4 MIT: domain c 47.2 1.1E+02 0.0024 22.5 6.8 52 52-103 21-72 (75)
79 PF00523 Fusion_gly: Fusion gl 47.2 14 0.00031 37.5 2.5 25 7-31 49-73 (490)
80 PF04728 LPP: Lipoprotein leuc 46.9 92 0.002 22.3 5.9 30 79-108 11-40 (56)
81 TIGR01069 mutS2 MutS2 family p 46.1 2.9E+02 0.0063 29.8 12.2 60 43-103 531-590 (771)
82 PF04212 MIT: MIT (microtubule 45.5 67 0.0015 23.0 5.3 50 51-100 19-68 (69)
83 PRK11546 zraP zinc resistance 45.4 1.9E+02 0.0042 24.6 9.2 62 41-102 47-113 (143)
84 PRK13895 conjugal transfer pro 45.2 1.9E+02 0.0042 24.6 15.5 23 81-103 42-64 (144)
85 PF10805 DUF2730: Protein of u 45.2 1.6E+02 0.0034 23.5 9.2 60 42-105 33-92 (106)
86 COG4736 CcoQ Cbb3-type cytochr 44.7 27 0.00059 25.3 2.9 9 226-234 23-31 (60)
87 PF00804 Syntaxin: Syntaxin; 44.6 1.3E+02 0.0029 22.4 12.2 61 41-104 42-102 (103)
88 PRK10929 putative mechanosensi 44.1 5.2E+02 0.011 29.2 21.2 205 2-209 61-308 (1109)
89 COG5605 Predicted small integr 44.0 69 0.0015 25.4 5.3 27 215-241 22-50 (115)
90 KOG0250 DNA repair protein RAD 43.2 5.3E+02 0.011 29.0 27.4 89 8-105 276-364 (1074)
91 PF06143 Baculo_11_kDa: Baculo 43.2 36 0.00079 26.3 3.6 26 209-234 31-56 (84)
92 COG3149 PulM Type II secretory 42.7 26 0.00057 30.7 3.1 30 209-238 31-60 (181)
93 PRK08476 F0F1 ATP synthase sub 42.6 48 0.001 27.7 4.7 21 225-245 16-36 (141)
94 PRK07353 F0F1 ATP synthase sub 42.5 42 0.00092 27.5 4.3 21 225-245 14-34 (140)
95 PF08113 CoxIIa: Cytochrome c 42.4 50 0.0011 21.1 3.5 20 224-243 14-33 (34)
96 PF09125 COX2-transmemb: Cytoc 42.3 50 0.0011 21.6 3.6 16 216-231 16-31 (38)
97 COG0711 AtpF F0F1-type ATP syn 42.2 35 0.00075 29.2 3.8 24 215-238 10-33 (161)
98 KOG4637 Adaptor for phosphoino 41.3 3.7E+02 0.008 26.7 14.4 23 81-103 226-248 (464)
99 PRK00409 recombination and DNA 40.6 3.8E+02 0.0083 28.9 12.1 59 44-103 537-595 (782)
100 PRK01026 tetrahydromethanopter 40.4 1.6E+02 0.0036 22.4 8.9 57 181-237 16-73 (77)
101 PF07798 DUF1640: Protein of u 40.2 2.4E+02 0.0053 24.3 23.5 13 21-33 3-15 (177)
102 smart00745 MIT Microtubule Int 40.0 1.4E+02 0.0031 21.6 7.3 51 52-102 23-73 (77)
103 cd00179 SynN Syntaxin N-termin 40.0 2.1E+02 0.0045 23.4 15.8 67 41-108 41-111 (151)
104 TIGR01167 LPXTG_anchor LPXTG-m 39.9 25 0.00053 21.7 1.9 22 212-234 9-30 (34)
105 PRK14159 heat shock protein Gr 39.9 1.6E+02 0.0035 25.8 7.7 32 77-108 29-60 (176)
106 PF08581 Tup_N: Tup N-terminal 39.7 1.7E+02 0.0036 22.3 8.9 23 4-26 2-24 (79)
107 PF05010 TACC: Transforming ac 39.1 2.9E+02 0.0063 24.9 12.0 27 81-107 150-176 (207)
108 PF09006 Surfac_D-trimer: Lung 39.1 98 0.0021 21.3 4.8 25 81-105 2-26 (46)
109 PF06160 EzrA: Septation ring 39.0 4.5E+02 0.0098 27.0 16.6 33 174-206 473-505 (560)
110 PRK13453 F0F1 ATP synthase sub 38.9 56 0.0012 28.1 4.7 20 226-245 28-47 (173)
111 PF14523 Syntaxin_2: Syntaxin- 38.8 1.8E+02 0.0038 22.2 10.7 62 41-105 30-91 (102)
112 PF10854 DUF2649: Protein of u 38.5 44 0.00095 24.3 3.2 23 217-239 44-66 (67)
113 PF04999 FtsL: Cell division p 38.2 1.5E+02 0.0032 22.7 6.6 17 220-236 19-35 (97)
114 PF00430 ATP-synt_B: ATP synth 37.6 43 0.00094 26.8 3.6 16 228-243 11-26 (132)
115 COG4068 Uncharacterized protei 37.3 66 0.0014 23.3 3.9 30 200-230 30-59 (64)
116 PF08822 DUF1804: Protein of u 36.9 2.9E+02 0.0062 24.1 9.4 88 2-95 65-162 (165)
117 PF04612 T2SM: Type II secreti 36.8 11 0.00025 31.5 0.0 31 202-232 4-34 (160)
118 COG5052 YOP1 Protein involved 36.6 2.9E+02 0.0062 24.5 8.6 57 181-238 4-60 (186)
119 cd02656 MIT MIT: domain contai 36.4 1.7E+02 0.0036 21.3 7.0 50 52-101 21-70 (75)
120 PF03993 DUF349: Domain of Unk 36.3 1.6E+02 0.0035 21.1 9.2 48 12-75 4-51 (77)
121 PRK09174 F0F1 ATP synthase sub 36.1 54 0.0012 29.3 4.2 19 227-245 64-82 (204)
122 PF06013 WXG100: Proteins of 1 36.1 1.6E+02 0.0034 20.9 9.0 31 1-31 9-39 (86)
123 PF04799 Fzo_mitofusin: fzo-li 36.1 1.8E+02 0.0038 25.6 7.2 55 47-101 112-167 (171)
124 COG5185 HEC1 Protein involved 35.8 5E+02 0.011 26.6 13.9 102 3-108 292-405 (622)
125 PF05545 FixQ: Cbb3-type cytoc 35.7 49 0.0011 22.4 3.0 18 215-232 13-30 (49)
126 TIGR00255 conserved hypothetic 35.6 3.9E+02 0.0084 25.3 10.2 42 48-90 154-195 (291)
127 TIGR00634 recN DNA repair prot 35.3 5.1E+02 0.011 26.5 13.6 29 80-108 348-376 (563)
128 PF05465 Halo_GVPC: Halobacter 35.0 28 0.00062 21.9 1.6 16 1-16 15-30 (32)
129 PRK14473 F0F1 ATP synthase sub 35.0 72 0.0016 27.0 4.7 21 225-245 17-37 (164)
130 PF00672 HAMP: HAMP domain; I 34.9 88 0.0019 21.8 4.5 31 218-248 4-34 (70)
131 PF08317 Spc7: Spc7 kinetochor 34.8 4E+02 0.0088 25.3 11.1 96 1-105 168-264 (325)
132 PF07889 DUF1664: Protein of u 34.8 2.7E+02 0.0058 23.1 11.7 79 10-103 36-114 (126)
133 TIGR03545 conserved hypothetic 34.8 5.4E+02 0.012 26.7 13.3 76 6-105 164-239 (555)
134 cd07588 BAR_Amphiphysin The Bi 34.2 3.1E+02 0.0068 24.6 8.8 29 5-33 11-39 (211)
135 PRK06569 F0F1 ATP synthase sub 34.2 82 0.0018 27.1 4.8 21 225-245 19-39 (155)
136 cd02684 MIT_2 MIT: domain cont 33.8 2E+02 0.0043 21.4 6.8 51 52-102 21-71 (75)
137 KOG4593 Mitotic checkpoint pro 33.7 6.2E+02 0.013 27.1 12.7 96 1-103 456-577 (716)
138 PF08693 SKG6: Transmembrane a 33.6 15 0.00033 24.4 0.2 16 220-235 23-38 (40)
139 PF13268 DUF4059: Protein of u 33.2 65 0.0014 24.2 3.5 23 216-238 13-35 (72)
140 PRK13461 F0F1 ATP synthase sub 33.1 82 0.0018 26.5 4.7 19 227-245 16-34 (159)
141 COG4814 Uncharacterized protei 32.8 16 0.00034 34.3 0.2 48 241-288 61-110 (288)
142 PHA02955 hypothetical protein; 32.6 45 0.00098 30.2 3.1 26 213-238 179-205 (213)
143 PHA03099 epidermal growth fact 32.6 30 0.00066 29.0 1.8 30 215-244 105-136 (139)
144 PRK11820 hypothetical protein; 32.3 4.4E+02 0.0095 24.9 11.3 42 48-90 152-193 (288)
145 PF10168 Nup88: Nuclear pore c 32.2 6.6E+02 0.014 26.9 18.6 26 81-106 635-660 (717)
146 PF14257 DUF4349: Domain of un 32.0 3.9E+02 0.0085 24.2 9.7 52 52-103 136-187 (262)
147 PF12126 DUF3583: Protein of u 30.7 4.9E+02 0.011 24.9 9.6 67 6-100 57-123 (324)
148 PRK14471 F0F1 ATP synthase sub 30.6 92 0.002 26.3 4.6 20 226-245 18-37 (164)
149 PF05393 Hum_adeno_E3A: Human 30.3 56 0.0012 25.6 2.8 20 213-232 34-53 (94)
150 PHA02691 hypothetical protein; 30.0 57 0.0012 26.4 2.9 22 215-236 3-25 (110)
151 PF15106 TMEM156: TMEM156 prot 29.9 83 0.0018 28.5 4.2 31 215-246 178-209 (226)
152 PF11932 DUF3450: Protein of u 29.7 4.3E+02 0.0092 24.0 10.4 36 59-96 106-142 (251)
153 PF05399 EVI2A: Ectropic viral 29.5 51 0.0011 29.9 2.9 16 216-231 134-149 (227)
154 COG2332 CcmE Cytochrome c-type 29.4 50 0.0011 28.3 2.7 27 207-233 2-28 (153)
155 PRK14740 kdbF potassium-transp 29.4 98 0.0021 19.1 3.2 19 215-233 3-21 (29)
156 PRK04778 septation ring format 29.1 6.5E+02 0.014 25.9 16.4 167 2-208 344-511 (569)
157 PF10828 DUF2570: Protein of u 29.0 68 0.0015 25.6 3.3 20 214-233 3-22 (110)
158 PF05597 Phasin: Poly(hydroxya 28.9 3.4E+02 0.0074 22.6 12.0 92 3-99 36-130 (132)
159 PRK14164 heat shock protein Gr 28.5 3E+02 0.0065 25.0 7.7 32 76-107 75-106 (218)
160 KOG4603 TBP-1 interacting prot 28.3 2.4E+02 0.0051 25.0 6.6 60 44-103 79-141 (201)
161 PF11669 WBP-1: WW domain-bind 28.2 79 0.0017 25.1 3.5 9 226-234 36-44 (102)
162 PF09574 DUF2374: Protein of 27.9 85 0.0018 21.0 3.0 19 215-233 19-37 (42)
163 PF01102 Glycophorin_A: Glycop 27.8 77 0.0017 26.2 3.5 16 216-231 66-81 (122)
164 PHA02681 ORF089 virion membran 27.6 96 0.0021 24.0 3.7 25 212-237 4-28 (92)
165 PRK13460 F0F1 ATP synthase sub 27.5 85 0.0018 26.9 3.9 19 227-245 27-45 (173)
166 smart00503 SynN Syntaxin N-ter 27.3 2.9E+02 0.0063 21.3 6.8 16 15-30 6-21 (117)
167 PF06730 FAM92: FAM92 protein; 27.1 4.8E+02 0.011 23.8 14.8 102 3-113 18-125 (219)
168 KOG0946 ER-Golgi vesicle-tethe 26.9 8.7E+02 0.019 26.7 19.9 71 3-73 643-714 (970)
169 PRK14154 heat shock protein Gr 26.9 4.7E+02 0.01 23.6 10.7 26 82-107 63-88 (208)
170 TIGR01144 ATP_synt_b ATP synth 26.6 77 0.0017 26.2 3.4 18 228-245 7-24 (147)
171 PF12669 P12: Virus attachment 26.4 63 0.0014 23.1 2.4 12 226-237 10-21 (58)
172 PF00804 Syntaxin: Syntaxin; 26.4 2.7E+02 0.0059 20.6 6.6 14 56-69 15-28 (103)
173 PF00435 Spectrin: Spectrin re 26.2 2.6E+02 0.0055 20.2 12.4 94 8-103 3-98 (105)
174 PF05130 FlgN: FlgN protein; 26.2 3.2E+02 0.007 21.4 11.6 63 2-73 4-66 (143)
175 PRK14161 heat shock protein Gr 26.2 3.4E+02 0.0075 23.7 7.5 28 81-108 29-56 (178)
176 KOG2568 Predicted membrane pro 26.2 85 0.0018 32.2 4.1 44 213-256 201-249 (518)
177 PF07106 TBPIP: Tat binding pr 26.1 3.2E+02 0.0068 23.2 7.2 52 53-104 84-135 (169)
178 PF13800 Sigma_reg_N: Sigma fa 26.0 1.3E+02 0.0028 23.2 4.3 22 200-221 2-23 (96)
179 PF13334 DUF4094: Domain of un 25.9 70 0.0015 25.2 2.8 25 214-240 3-27 (95)
180 PF10498 IFT57: Intra-flagella 25.9 6.3E+02 0.014 24.6 11.8 43 13-61 216-258 (359)
181 PRK14472 F0F1 ATP synthase sub 25.8 94 0.002 26.7 3.9 18 228-245 30-47 (175)
182 PF10234 Cluap1: Clusterin-ass 25.8 5.6E+02 0.012 24.0 13.0 60 44-105 158-217 (267)
183 PF14335 DUF4391: Domain of un 25.7 2.3E+02 0.005 25.3 6.5 38 56-93 183-220 (221)
184 PF15168 TRIQK: Triple QxxK/R 25.6 1.2E+02 0.0027 23.0 3.9 23 213-235 50-72 (79)
185 PF11119 DUF2633: Protein of u 25.3 96 0.0021 22.4 3.1 19 212-230 9-27 (59)
186 PF08651 DASH_Duo1: DASH compl 25.1 3E+02 0.0066 20.8 6.7 26 179-204 21-46 (78)
187 KOG3976 Mitochondrial F1F0-ATP 24.8 5.6E+02 0.012 23.7 10.4 82 43-125 128-216 (247)
188 PF00038 Filament: Intermediat 24.7 5.6E+02 0.012 23.6 12.8 102 6-124 188-289 (312)
189 PRK14157 heat shock protein Gr 24.6 3.5E+02 0.0075 24.8 7.4 29 80-108 86-114 (227)
190 PF01102 Glycophorin_A: Glycop 24.5 1E+02 0.0022 25.5 3.6 20 214-233 67-86 (122)
191 KOG0250 DNA repair protein RAD 24.5 1E+03 0.023 26.8 14.9 80 200-282 478-575 (1074)
192 PF06682 DUF1183: Protein of u 24.4 60 0.0013 31.2 2.6 16 222-237 162-177 (318)
193 PF10966 DUF2768: Protein of u 24.4 2.1E+02 0.0045 20.7 4.7 37 215-251 3-40 (58)
194 PRK13460 F0F1 ATP synthase sub 24.2 1.2E+02 0.0026 26.0 4.2 25 215-239 20-44 (173)
195 PF07303 Occludin_ELL: Occludi 24.1 3.6E+02 0.0079 21.3 8.3 24 80-103 75-98 (101)
196 TIGR00996 Mtu_fam_mce virulenc 24.0 3.5E+02 0.0075 24.8 7.6 47 142-188 192-238 (291)
197 TIGR02132 phaR_Bmeg polyhydrox 23.9 5.2E+02 0.011 22.9 11.3 60 41-103 72-132 (189)
198 PRK14472 F0F1 ATP synthase sub 23.8 1.2E+02 0.0026 26.0 4.2 25 215-239 22-46 (175)
199 PF13150 DUF3989: Protein of u 23.8 1.5E+02 0.0032 22.9 4.2 23 214-236 28-50 (85)
200 PRK14140 heat shock protein Gr 23.7 3.3E+02 0.0073 24.1 7.0 27 82-108 48-74 (191)
201 PF10864 DUF2663: Protein of u 23.7 2.9E+02 0.0063 23.1 6.1 32 206-237 13-44 (130)
202 PHA02650 hypothetical protein; 23.5 1.3E+02 0.0029 23.0 3.7 15 191-205 19-33 (81)
203 PF03194 LUC7: LUC7 N_terminus 23.5 5.9E+02 0.013 23.5 10.2 25 77-101 148-172 (254)
204 PRK11637 AmiB activator; Provi 23.4 7.1E+02 0.015 24.4 25.0 39 150-188 178-216 (428)
205 PRK08944 motB flagellar motor 23.3 3.2E+02 0.007 25.9 7.3 37 213-249 15-53 (302)
206 PF05667 DUF812: Protein of un 23.3 8.8E+02 0.019 25.4 20.6 58 149-206 523-580 (594)
207 PRK03814 oxaloacetate decarbox 23.2 1.4E+02 0.003 23.0 3.9 11 220-230 20-30 (85)
208 KOG4687 Uncharacterized coiled 23.1 6.6E+02 0.014 23.9 10.1 92 9-103 12-108 (389)
209 PF04156 IncA: IncA protein; 23.0 4.8E+02 0.01 22.3 13.4 26 80-105 125-150 (191)
210 PF03623 Focal_AT: Focal adhes 22.9 4.7E+02 0.01 22.1 10.0 84 15-105 8-92 (139)
211 PRK09173 F0F1 ATP synthase sub 22.9 1.2E+02 0.0026 25.5 3.9 9 237-245 23-31 (159)
212 TIGR02956 TMAO_torS TMAO reduc 22.9 9.5E+02 0.021 25.7 30.1 28 44-71 73-100 (968)
213 PF06129 Chordopox_G3: Chordop 22.8 82 0.0018 25.6 2.7 22 217-238 5-26 (109)
214 PF06160 EzrA: Septation ring 22.5 8.6E+02 0.019 25.0 19.0 95 2-103 56-154 (560)
215 PF10215 Ost4: Oligosaccaryltr 22.5 1.2E+02 0.0027 19.5 2.9 16 215-230 10-25 (35)
216 TIGR01149 mtrG N5-methyltetrah 22.2 3.4E+02 0.0074 20.3 8.3 52 182-233 14-66 (70)
217 PF05478 Prominin: Prominin; 22.2 1E+03 0.022 25.7 25.9 25 210-234 409-433 (806)
218 PF00430 ATP-synt_B: ATP synth 22.2 1.1E+02 0.0024 24.3 3.5 25 215-239 3-27 (132)
219 PRK12901 secA preprotein trans 22.0 6.5E+02 0.014 28.4 9.9 83 10-97 15-97 (1112)
220 PRK13665 hypothetical protein; 21.9 1.3E+02 0.0028 28.4 4.1 6 246-251 60-65 (316)
221 PF06696 Strep_SA_rep: Strepto 21.8 1.9E+02 0.0042 17.3 4.3 22 82-103 2-23 (25)
222 PRK14148 heat shock protein Gr 21.6 3.1E+02 0.0068 24.4 6.4 26 81-106 50-75 (195)
223 PF10157 DUF2365: Uncharacteri 21.4 5.2E+02 0.011 22.0 9.8 67 7-73 53-124 (149)
224 PF13829 DUF4191: Domain of un 21.3 3.1E+02 0.0066 25.1 6.3 28 203-230 14-41 (224)
225 TIGR02808 short_TIGR02808 cons 21.3 1.2E+02 0.0027 20.2 2.8 19 215-233 19-37 (42)
226 PF15290 Syntaphilin: Golgi-lo 21.3 4.1E+02 0.009 25.2 7.3 47 56-105 90-137 (305)
227 KOG1094 Discoidin domain recep 21.1 2E+02 0.0044 30.4 5.6 20 213-232 389-408 (807)
228 PF09435 DUF2015: Fungal prote 21.0 1.5E+02 0.0033 24.7 4.0 27 215-241 3-29 (128)
229 PF08702 Fib_alpha: Fibrinogen 21.0 5.1E+02 0.011 21.8 9.9 30 4-33 23-52 (146)
230 PRK09731 putative general secr 20.9 1.6E+02 0.0034 25.9 4.3 35 202-236 25-60 (178)
231 PRK14153 heat shock protein Gr 20.9 6E+02 0.013 22.6 8.3 28 80-107 42-69 (194)
232 TIGR03321 alt_F1F0_F0_B altern 20.8 1.7E+02 0.0036 26.7 4.7 20 226-245 15-34 (246)
233 KOG0812 SNARE protein SED5/Syn 20.7 7.2E+02 0.016 23.8 8.7 18 56-73 53-70 (311)
234 PRK14474 F0F1 ATP synthase sub 20.7 1.7E+02 0.0037 26.9 4.7 20 226-245 15-34 (250)
235 PF15330 SIT: SHP2-interacting 20.7 1.5E+02 0.0033 23.8 3.8 21 217-237 5-25 (107)
236 PF00746 Gram_pos_anchor: Gram 20.5 33 0.00072 21.9 0.0 23 213-235 17-39 (39)
237 PRK13461 F0F1 ATP synthase sub 20.5 1.6E+02 0.0036 24.7 4.3 24 216-239 10-33 (159)
238 COG5325 t-SNARE complex subuni 20.4 7.4E+02 0.016 23.5 24.2 44 176-219 219-263 (283)
239 PRK03947 prefoldin subunit alp 20.4 4.8E+02 0.01 21.3 9.9 25 80-104 96-120 (140)
240 PF14523 Syntaxin_2: Syntaxin- 20.3 3.9E+02 0.0084 20.2 12.7 89 18-114 4-93 (102)
241 PF15183 MRAP: Melanocortin-2 20.3 1.1E+02 0.0024 23.7 2.8 10 216-225 41-50 (90)
242 PRK10869 recombination and rep 20.3 9.5E+02 0.021 24.7 14.7 33 80-112 343-375 (553)
243 PF07851 TMPIT: TMPIT-like pro 20.3 7.9E+02 0.017 23.8 11.7 10 12-21 3-12 (330)
244 PF15125 TMEM238: TMEM238 prot 20.3 1.5E+02 0.0032 21.9 3.3 25 210-234 30-54 (65)
245 PRK14162 heat shock protein Gr 20.3 4.3E+02 0.0093 23.5 7.0 25 83-107 51-75 (194)
246 PF14316 DUF4381: Domain of un 20.2 1.4E+02 0.003 24.9 3.7 18 215-232 24-41 (146)
247 KOG2150 CCR4-NOT transcription 20.2 3.1E+02 0.0068 28.5 6.7 48 54-105 18-65 (575)
248 KOG1850 Myosin-like coiled-coi 20.1 5.3E+02 0.011 25.1 7.8 91 2-95 239-330 (391)
249 PF04210 MtrG: Tetrahydrometha 20.0 3.8E+02 0.0083 20.0 8.2 52 182-233 14-66 (70)
No 1
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-31 Score=232.81 Aligned_cols=213 Identities=20% Similarity=0.290 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHH
Q 022606 4 VVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSA 83 (294)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~ 83 (294)
|++.||+||++||++..+++.+|..+.+.. +. +++..+.+ |...+.+++.+|++||++|+.+| |+-|..+
T Consensus 1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~--~~---ekk~~l~~----i~~~leEa~ell~qMdlEvr~lp-~~~Rs~~ 70 (220)
T KOG1666|consen 1 MSSLFEGYEQQYRELSAEITKKIGRALSLP--GS---EKKQLLSE----IDSKLEEANELLDQMDLEVRELP-PNFRSSY 70 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHhcCC--ch---HHHHHHHH----HHHhHHHHHHHHHHHHHHHHhCC-chhhhHH
Confidence 789999999999999999999999999876 22 44454544 44589999999999999999988 5559999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------chhhhhhhhcchhhhhhhhHHHhHHHHHH
Q 022606 84 QSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGE------ESTIRRRNLQTKAGMTSAAESITESLRRT 157 (294)
Q Consensus 84 ~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~------~~~~r~r~~~~~~~l~~~s~~~T~~L~rt 157 (294)
..++..||++++.++.++++.. + ++... ..|++++.... ..++|.+.++.++++..+ |++|..+
T Consensus 71 ~~KlR~yksdl~~l~~e~k~~~--~-~~~~~---~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRs----t~rl~ds 140 (220)
T KOG1666|consen 71 LSKLREYKSDLKKLKRELKRTT--S-RNLNA---GDRDELLEALEADDQNISADQRARLLQNTERLERS----TDRLKDS 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--c-ccccc---chHHHHHhhhhccccccchhHHHHHHhhhHHHHHh----HHHHHHH
Confidence 9999999999999999999976 1 21211 24666665432 224566666777777655 9999999
Q ss_pred HHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 158 RQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRI 236 (294)
Q Consensus 158 ~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~rRl 236 (294)
++.+.++.+.|+.+|++|+.|+++|.+++++++++++.||+|+++|++|.||..++||++++.++++++.+++|+|..|
T Consensus 141 ~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf 219 (220)
T KOG1666|consen 141 QRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKF 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999876
No 2
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.2e-26 Score=201.05 Aligned_cols=206 Identities=17% Similarity=0.227 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHhh-CcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHH
Q 022606 17 EAYAKTQAHIKAIENY-GKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECN 95 (294)
Q Consensus 17 ~l~~~~~~~i~~l~~~-~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~ 95 (294)
.+|+.|++.+..++.. ...+.. ....+...+...|+..|..+.+.|++|+..+.++|| ..|+++..+++++++|..
T Consensus 3 ~ly~~t~~~~~k~q~~l~rlE~~--~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp-~~rq~~rlr~dQl~~d~~ 79 (213)
T KOG3251|consen 3 ALYQSTNRQLDKLQRGLIRLERT--IKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPP-KSRQAARLRVDQLLEDVE 79 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcc--ccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCC-CcHHHHHHHHHHHHHHHH
Confidence 4666677666666652 332221 122567788889999999999999999999999885 458888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcchhhhhhhhHHHhHHHHHHHHHHHHHHHHhHHHHHhH
Q 022606 96 NLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTF 175 (294)
Q Consensus 96 ~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~~r~r~~~~~~~l~~~s~~~T~~L~rt~~~m~~~le~g~~~L~~L 175 (294)
+++.+++++. .+++.++.+..+|++||.+++.. +...+....+...+..++|.+++++|++.+++|..++++|
T Consensus 80 ~l~~~l~~~~--~R~~~r~~~~~er~~lL~~~~~~-----~~~~~~~~~D~el~~~d~l~~s~~~lDd~l~~G~~ile~l 152 (213)
T KOG3251|consen 80 HLQTSLRTSM--NRNNRREQQARERVELLDRRFTN-----GATGTSIPFDEELQENDSLKRSHNMLDDLLESGSAILENL 152 (213)
T ss_pred HHHHHHHHHH--HHhHHHHHHHHHHHHHhcCCCCC-----CCccCCCcchHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999977 44556666667899999887642 1111112245556779999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022606 176 DESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 176 ~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~ 233 (294)
.+|+-+|+++++++++..++||.|+.+|+.|+||.++||||||+|+++ +++++|.+|
T Consensus 153 ~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~-~~v~~yl~~ 209 (213)
T KOG3251|consen 153 VEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVIL-TLVIMYLFY 209 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999655 455555544
No 3
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.91 E-value=3.9e-24 Score=167.87 Aligned_cols=91 Identities=45% Similarity=0.773 Sum_probs=89.3
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 022606 146 AAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFS 225 (294)
Q Consensus 146 ~s~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl 225 (294)
++.++|++|+|++++|++++++|+.+++.|.+|+++|.+++++|.++++.|+.|+++|+.|+|++++||+|+|+||+||+
T Consensus 2 ~s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~ 81 (92)
T PF03908_consen 2 ASSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFL 81 (92)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 022606 226 CAVLYVVSKRI 236 (294)
Q Consensus 226 ~~i~~Ii~rRl 236 (294)
+||+||+|||+
T Consensus 82 ~~v~yI~~rRl 92 (92)
T PF03908_consen 82 LVVLYILWRRL 92 (92)
T ss_pred HHHHHHhhhcC
Confidence 99999999996
No 4
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.4e-09 Score=96.67 Aligned_cols=208 Identities=14% Similarity=0.165 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc---hhhhh--hh---hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022606 5 VEAVEKAKKEWDEAYAKTQAHIKAIENYGKS---REEKE--KS---SNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPT 76 (294)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~---~~~~~--~~---~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~ 76 (294)
+.-||-.-++=..+=.++.-++.+...++.. |.+++ .- ......+..+|+.-|+++....+.|.. +...|.
T Consensus 4 ~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s~a 82 (231)
T KOG3208|consen 4 SSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASSPA 82 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccCCC
Confidence 3345555555555666666666665554321 11000 00 124456677777789999999999987 222232
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcchhhh--hhhhHHHhHHH
Q 022606 77 SDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGM--TSAAESITESL 154 (294)
Q Consensus 77 ~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~~r~r~~~~~~~l--~~~s~~~T~~L 154 (294)
+ -..+...+..|++=|+.+.++|+++.- ++. +.+||+.|++...+.. .+. ..-.+. ...-...++.|
T Consensus 83 ~--~aa~~htL~RHrEILqdy~qef~rir~----n~~--a~~e~~~Ll~s~~~~~--~~~-~~~~~~~~~e~~lkE~~~i 151 (231)
T KOG3208|consen 83 N--SAAVMHTLQRHREILQDYTQEFRRIRS----NID--AKRERESLLESVRADI--SSY-PSASGFNRGEMYLKEHDHI 151 (231)
T ss_pred C--cHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHHHhhhh--ccC-CccCCCchHHHHHHHhccc
Confidence 2 367788999999999999999999662 343 3457888886532100 000 000000 02234578999
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 022606 155 RRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILF 224 (294)
Q Consensus 155 ~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~f 224 (294)
.++.+.+++.+++..++.++|+.|+.+|++++.++.++.+-+-.-+.||.+|.++-..|.+|+.+.+.++
T Consensus 152 n~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C 221 (231)
T KOG3208|consen 152 NNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVC 221 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876653
No 5
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=98.97 E-value=4.5e-09 Score=77.13 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=59.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhh
Q 022606 148 ESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQD 210 (294)
Q Consensus 148 ~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~ 210 (294)
...+++|.+++++++++++.|..++.+|..|+++|+++++++.++++.++.|+++|+.|.||.
T Consensus 4 ~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 4 LRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 346889999999999999999999999999999999999999999999999999999999983
No 6
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=98.69 E-value=2.5e-07 Score=70.07 Aligned_cols=79 Identities=19% Similarity=0.358 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHH
Q 022606 15 WDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKEC 94 (294)
Q Consensus 15 ~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL 94 (294)
|+.++.++..+|..+...++ . +....+..++. .|+++..+|++|+++++..| ++.|..+..+|..||.+|
T Consensus 1 f~~l~~~i~~~l~~~~~~~~--~---~r~~~i~~~e~----~l~ea~~~l~qMe~E~~~~p-~s~r~~~~~kl~~yr~~l 70 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSG--E---QRKSLIREIER----DLDEAEELLKQMELEVRSLP-PSERNQYKSKLRSYRSEL 70 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-C--H---HHHHHHHHHHH----HHHHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCh--H---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHH
Confidence 78899999999999997652 2 45566666655 79999999999999999985 788999999999999999
Q ss_pred HHHHHHHHH
Q 022606 95 NNLRLSLRN 103 (294)
Q Consensus 95 ~~Lr~~~rk 103 (294)
..++..|++
T Consensus 71 ~~lk~~l~~ 79 (79)
T PF05008_consen 71 KKLKKELKK 79 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999875
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.25 Score=46.31 Aligned_cols=179 Identities=11% Similarity=0.112 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChH--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 43 SNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSD--Q-VQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEE 119 (294)
Q Consensus 43 ~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~--~-r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~e 119 (294)
.-++++|--.|+.+|..++..|-++..+..-...-+ + ..-.+..|..++..|.+.-.+|+-..- -|...-.+...
T Consensus 78 ~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE--~Rtenmka~k~ 155 (311)
T KOG0812|consen 78 PVEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLE--IRTENMKAVKN 155 (311)
T ss_pred chhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHhh
Confidence 347889999999999999999988876663322222 1 345778899999999999988887552 23333334456
Q ss_pred HHhhcCCCC---ch-hhhhh------------------------hh----cc---hhhhhhhh-HHHhH---HHHHHHHH
Q 022606 120 RELLLGGGE---ES-TIRRR------------------------NL----QT---KAGMTSAA-ESITE---SLRRTRQL 160 (294)
Q Consensus 120 ReeLL~~~~---~~-~~r~r------------------------~~----~~---~~~l~~~s-~~~T~---~L~rt~~~ 160 (294)
|-+.|+.+. .. +++.+ +. .+ ...+++.+ .-+++ .+++..-.
T Consensus 156 R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEst 235 (311)
T KOG0812|consen 156 RRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQQQQMALLDESDEYVQERAKTMQNIEST 235 (311)
T ss_pred HHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776531 00 11110 00 00 00122222 11222 22222222
Q ss_pred HHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022606 161 MVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLIL 223 (294)
Q Consensus 161 m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~ 223 (294)
+.+.=..-+.......+|.+++++..+-+.+.+-.+..+...|-++--|...+||+++=.|+|
T Consensus 236 IsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i 298 (311)
T KOG0812|consen 236 ISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGI 298 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 222222334555566899999999999999999999999999999999999999998765544
No 8
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.02 E-value=0.17 Score=46.45 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=49.3
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHH-HhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHH
Q 022606 144 TSAAESITESLRRTRQLMVQEVE-RNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLG 220 (294)
Q Consensus 144 ~~~s~~~T~~L~rt~~~m~~~le-~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~ 220 (294)
+++.....+.|..---.|+..+- .+...-+.|.+...+|..+...+..--+.|+....=++.+.+.... |++|+.
T Consensus 158 l~~~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~ 233 (251)
T PF09753_consen 158 LQHHRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLM 233 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHH
Confidence 33444445555555555555555 4445566788888999999888887777777777777777666655 555554
No 9
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.014 Score=47.46 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=52.3
Q ss_pred HhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022606 167 RNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKR 235 (294)
Q Consensus 167 ~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~rR 235 (294)
.+-.+..+...|...|.+..+.+.+..+.|+.+-.=++.|.|+ +.+-++..+++|++|+++|+|.+
T Consensus 51 Ls~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~---sg~~l~~~m~~f~lV~~fi~~~~ 116 (118)
T KOG3385|consen 51 LSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR---SGISLLCWMAVFSLVAFFILWVW 116 (118)
T ss_pred HHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHhhee
Confidence 4556667788999999999999999999999999989999888 55555555666666777776654
No 10
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.64 Score=42.63 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCh-----HhHHHHHH
Q 022606 11 AKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTS-----DQVQSAQS 85 (294)
Q Consensus 11 ~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~-----~~r~~~~~ 85 (294)
...+-+.+.+++++.+++-..++..+ .+..+++-..++..|...-.-+++.-..+.+-|.. .+-+.=+.
T Consensus 11 v~~e~~k~~~~~~~~~~r~~~~~~~~------~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~ 84 (235)
T KOG3202|consen 11 VKNETLKLSEEIQGLYQRRSELLKDT------GSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELSRRRR 84 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc------cchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHH
Confidence 33477888888888888888875331 24444555555545555544455444444443321 11222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchh----hhhhhhcc--------hhhhhhhhHHHhHH
Q 022606 86 LLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEEST----IRRRNLQT--------KAGMTSAAESITES 153 (294)
Q Consensus 86 rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~----~r~r~~~~--------~~~l~~~s~~~T~~ 153 (294)
.++..+.++...+..|.+-.. +...-|+.|++.+..+. ..+..... ...+++ +--+.
T Consensus 85 ~i~~lr~q~~~~~~~~~~~~~--------~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~---eQDe~ 153 (235)
T KOG3202|consen 85 FIDNLRTQLRQMKSKMAMSGF--------ANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQ---EQDEG 153 (235)
T ss_pred HHHHHHHHHHHHHHHHHhhcc--------ccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHH---HHHHH
Confidence 455555555555555544110 00023777876543210 00000000 011221 12233
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhh
Q 022606 154 LRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQD 210 (294)
Q Consensus 154 L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~ 210 (294)
|.-.+..+.-.-..|..+-+.|.+|...|-.....+..+.+-|....+-+..+.+..
T Consensus 154 Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~ 210 (235)
T KOG3202|consen 154 LDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMA 210 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444555677888899999999999999999999999999999999999933
No 11
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=95.68 E-value=0.54 Score=36.10 Aligned_cols=42 Identities=21% Similarity=0.443 Sum_probs=26.0
Q ss_pred HhHHHHHHHHHHHHH----HHHhHHHHHhHHhhhHHHHHHHHHHhhH
Q 022606 150 ITESLRRTRQLMVQE----VERNASTLMTFDESTGVLRKAESEYKGH 192 (294)
Q Consensus 150 ~T~~L~rt~~~m~~~----le~g~~~L~~L~~q~~tL~~t~~~~~~~ 192 (294)
+.+.+..++..|.+. +++| ..+++|.+.++.|......|...
T Consensus 8 i~~~v~~v~~im~~Ni~~ll~Rg-e~L~~L~~kt~~L~~~a~~F~k~ 53 (89)
T PF00957_consen 8 IQEQVEEVKNIMRENIDKLLERG-EKLEELEDKTEELSDNAKQFKKN 53 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhHHHHHH
Confidence 344555555555443 4454 56788888888887777766543
No 12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=2.9 Score=39.67 Aligned_cols=82 Identities=9% Similarity=0.178 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHH---HHHHhhhhhHHHHHHHHHHHHHH
Q 022606 151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLS---TMQRQDIIDRVILVLGLILFSCA 227 (294)
Q Consensus 151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~---~i~RR~~~Dk~il~~~~~~fl~~ 227 (294)
++.+.+-.+.|.+.-+.-........+|.+++.....-..........+..=+. .+.|++..-|||+++++++++++
T Consensus 205 h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v 284 (297)
T KOG0810|consen 205 HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVV 284 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHH
Confidence 555666666666666666666667788999999999988888888888777777 77777777777777766555444
Q ss_pred HHHHH
Q 022606 228 VLYVV 232 (294)
Q Consensus 228 i~~Ii 232 (294)
+++++
T Consensus 285 ~v~~i 289 (297)
T KOG0810|consen 285 LVVVI 289 (297)
T ss_pred Hhhhh
Confidence 44433
No 13
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=3.2 Score=39.22 Aligned_cols=203 Identities=10% Similarity=0.111 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHhh-C-----cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHH
Q 022606 15 WDEAYAKTQAHIKAIENY-G-----KSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQ 88 (294)
Q Consensus 15 ~~~l~~~~~~~i~~l~~~-~-----~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~ 88 (294)
-.-....+.++|..+... . +.+.+. ++......|...|..-|..+.+.|..+.---.. ++|+++-..+.-..
T Consensus 66 v~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~-ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~-~~~~e~~~~~n~~~ 143 (305)
T KOG0809|consen 66 VDYYLSRVRRKIDELGKAHAKHLRPSFSDKR-EDEHEIEELTQEITQLLQKCQKLIQRLSASLNQ-LSPSERLLRKNAQG 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CChHHHHHHHHHHH
Confidence 344456667777766542 1 222222 456677788888989999999999988766665 45777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCC-------CCchhhhhhhhcchhhhh--hhhHH-HhHHHHHH
Q 022606 89 SWKKECNNLRLSLRNANLQAKANMRKAAQEERE-LLLGG-------GEESTIRRRNLQTKAGMT--SAAES-ITESLRRT 157 (294)
Q Consensus 89 ~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eRe-eLL~~-------~~~~~~r~r~~~~~~~l~--~~s~~-~T~~L~rt 157 (294)
.+-.+|+.+-.+||..+..--+.++..+ ++. .++.. +.+.+.-++..+ .+.++ ..+.. +-++= +-
T Consensus 144 ~la~~LQ~~s~~fR~~Qs~YLK~l~~~e--e~~~~~e~~~~~~~~~~dd~d~~~~~~q-e~ql~~~e~~~~~~~erE-~E 219 (305)
T KOG0809|consen 144 YLALQLQTLSREFRGLQSKYLKRLRNRE--ENSQEYEDSLDNTVDLPDDEDFSDRTFQ-EQQLMLFENNEEVVRERE-KE 219 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchh--hcccchhhhccccccCcchhhhhhhhHH-HHHHHHHhcchHHHHHHH-HH
Confidence 9999999999999998865444444322 121 11111 001111111000 01111 00000 00110 11
Q ss_pred HHHHHHHHHHhHHHHHhH----HhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022606 158 RQLMVQEVERNASTLMTF----DESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLIL 223 (294)
Q Consensus 158 ~~~m~~~le~g~~~L~~L----~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~ 223 (294)
.+.|.+.+---..++.+| .+|...+-...--+..+.-.+..+-+=|.+.++-.+..+-..++++++
T Consensus 220 V~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~ 289 (305)
T KOG0809|consen 220 VTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLT 289 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHH
Confidence 111222221122233332 567777766666666666777777777777777777766555444333
No 14
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=94.91 E-value=0.79 Score=35.15 Aligned_cols=81 Identities=9% Similarity=0.097 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022606 152 ESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYV 231 (294)
Q Consensus 152 ~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~I 231 (294)
+.+......+++.-+.-..+++.+-+..+.|..+.++=..+...-..=++--+.+.|+.+-.++-+++.+++++++++|+
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 56788888999999999999999999999988887766555555444444445555555555555554444444444444
Q ss_pred H
Q 022606 232 V 232 (294)
Q Consensus 232 i 232 (294)
+
T Consensus 83 i 83 (89)
T PF00957_consen 83 I 83 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 15
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=5.5 Score=32.64 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHH----------HhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHH
Q 022606 151 TESLRRTRQLMVQEVERNASTL----------MTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLG 220 (294)
Q Consensus 151 T~~L~rt~~~m~~~le~g~~~L----------~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~ 220 (294)
+..++++.+.+++.++.-..+. +.|.+-++.|....+.|. ..+.++=+.|=.....-++++.+.
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~------~~A~klkrk~wWkn~Km~~il~~v 101 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFE------KTAVKLKRKMWWKNCKMRIILGLV 101 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666665555444 444544555544444443 345666677777777777666666
Q ss_pred HHHHHHH
Q 022606 221 LILFSCA 227 (294)
Q Consensus 221 ~~~fl~~ 227 (294)
+++++++
T Consensus 102 ~~i~l~i 108 (116)
T KOG0860|consen 102 IIILLVV 108 (116)
T ss_pred HHHHHHH
Confidence 5554433
No 16
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.50 E-value=20 Score=35.69 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcchhhhhhhhHHHhHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQL 160 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~~r~r~~~~~~~l~~~s~~~T~~L~rt~~~ 160 (294)
...+.-++.++.+..+||+.++.|+......+-+-.+++ .++-+.+.|-.+.
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee----------------------------~~~reen~rlQrk 300 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE----------------------------VDHREENERLQRK 300 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------hhHHHHHHHHHHH
Confidence 345566778899999999999999876422221110000 1223334444556
Q ss_pred HHHHHHHhHHHHHhHHhhhHHHHHHHHHHhh
Q 022606 161 MVQEVERNASTLMTFDESTGVLRKAESEYKG 191 (294)
Q Consensus 161 m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~ 191 (294)
+..++++-++.-..|.++...|.--..+|.+
T Consensus 301 L~~e~erRealcr~lsEsesslemdeery~N 331 (552)
T KOG2129|consen 301 LINELERREALCRMLSESESSLEMDEERYLN 331 (552)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 7778888777777788877777766666654
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.60 E-value=8 Score=34.76 Aligned_cols=31 Identities=19% Similarity=0.008 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022606 202 LLSTMQRQDIIDRVILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 202 ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~ 233 (294)
-+..+.+.. .-+|+++||.++|+.+++=+|.
T Consensus 161 ~~~~~~~~~-~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 161 QLDDKQRTI-IMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHH-HHHHHHHchHHHHHHHHHHHHh
Confidence 334444433 3456666666666555544443
No 18
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=87.31 E-value=24 Score=32.53 Aligned_cols=88 Identities=8% Similarity=0.052 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHH----hHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 022606 151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLM----RTRNLLSTMQRQDIIDRVILVLGLILFSC 226 (294)
Q Consensus 151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~----~S~~ll~~i~RR~~~Dk~il~~~~~~fl~ 226 (294)
..-|.+...+|++..+.-..+-+...+|.+......+.+-+.....+ -..+-++. -|.+...||+.|+..++.++
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~ 262 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIII 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHH
Confidence 45567778888888888888888889999988888877766554443 33455555 78888899999988888788
Q ss_pred HHHHHHHHHHhhh
Q 022606 227 AVLYVVSKRIGLL 239 (294)
Q Consensus 227 ~i~~Ii~rRl~~~ 239 (294)
+|+|++|+-++++
T Consensus 263 viv~vv~~v~~~v 275 (280)
T COG5074 263 VIVVVVFKVVPFV 275 (280)
T ss_pred HHHHHHhcccchh
Confidence 8888887766554
No 19
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=85.87 E-value=28 Score=31.83 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=62.9
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHHHHhHHHHH-hHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHH
Q 022606 142 GMTSAAESITESLRRTRQLMVQEVERNASTLM-TFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLG 220 (294)
Q Consensus 142 ~l~~~s~~~T~~L~rt~~~m~~~le~g~~~L~-~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~ 220 (294)
..+.....+.+-|..+--.|+..+-.+..+.+ .|.+-++++..+-..+..-..-|+.-+.=+....+.-..+++++...
T Consensus 144 q~l~~q~~lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~mi 223 (244)
T KOG2678|consen 144 QQLEDQDTLQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMI 223 (244)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHH
Confidence 33333344566666777777777776655544 57888888888877777666667666666777777766666666666
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022606 221 LILFSCAVLYVVSKRIG 237 (294)
Q Consensus 221 ~~~fl~~i~~Ii~rRl~ 237 (294)
|++|+.+|..|++.+|+
T Consensus 224 I~v~~sFVsMiliiqif 240 (244)
T KOG2678|consen 224 IFVILSFVSMILIIQIF 240 (244)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66665566666666654
No 20
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.87 E-value=27 Score=31.67 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLR 98 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr 98 (294)
+.++.-+.+++.+++...
T Consensus 75 R~yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 75 REYKSDLKKLKRELKRTT 92 (220)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555555555555544
No 21
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=84.88 E-value=0.58 Score=38.67 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 022606 214 RVILVLGLILFSCA 227 (294)
Q Consensus 214 k~il~~~~~~fl~~ 227 (294)
||+||++|++++++
T Consensus 1 RW~l~~iii~~i~l 14 (130)
T PF12273_consen 1 RWVLFAIIIVAILL 14 (130)
T ss_pred CeeeHHHHHHHHHH
Confidence 45566554444333
No 22
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.94 E-value=42 Score=31.50 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 41 KSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANL 106 (294)
Q Consensus 41 ~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l 106 (294)
+.+.++......+.+.+.....++.+++..... .+-+..+...+.++.++..--+.|.+.+.
T Consensus 55 ~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~~----~~~~~~k~~~~kL~~ef~~~l~efq~vQr 116 (269)
T KOG0811|consen 55 ELRDKLHQERLNANQLVKDTSALLKEIDTLRLE----SDLRQLKIQLDKLVDEFSAALKEFQKVQR 116 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777888888888888877772 11233344445555555555555555443
No 23
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=81.70 E-value=45 Score=31.08 Aligned_cols=48 Identities=21% Similarity=0.016 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 52 LAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 52 ~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
..-..++.+...+++++..+.+.+. .....++-.++.++..++..+.-
T Consensus 146 ~~~~~l~~l~~~~~~le~~l~~~~~----~~~l~~l~~l~~~l~~l~~~l~~ 193 (318)
T TIGR00383 146 SYFPLLENIEDELEELEDEIISGPT----STLMDEILSLRTELLALRRSLWP 193 (318)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566777777777766655332 24455677777777766655543
No 24
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.68 E-value=21 Score=34.06 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=65.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 022606 148 ESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCA 227 (294)
Q Consensus 148 ~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~ 227 (294)
.+.-+..+.+.+.|.+....-.-..+-+..|.+.+...++--.+.+-.+..++.=|+...+..-.-+.++.++++++-++
T Consensus 228 n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~ 307 (316)
T KOG3894|consen 228 NELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFS 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 34455566667777776666666677788999999999999999999999999999999888877777766665555555
Q ss_pred HHHHHH
Q 022606 228 VLYVVS 233 (294)
Q Consensus 228 i~~Ii~ 233 (294)
.+|+-|
T Consensus 308 lLFldw 313 (316)
T KOG3894|consen 308 LLFLDW 313 (316)
T ss_pred HHHHhh
Confidence 555443
No 25
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=80.49 E-value=5.3 Score=28.84 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022606 200 RNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 200 ~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~ 233 (294)
+.....-.|+.+.-++++++.+++|+++.+|+.|
T Consensus 25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~ 58 (59)
T PF09889_consen 25 REEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566677777888888888777666666543
No 26
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=78.25 E-value=26 Score=32.08 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHH
Q 022606 56 GLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKEC 94 (294)
Q Consensus 56 ~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL 94 (294)
-+..++..+++|...... |++..=..|..+++.++.-+
T Consensus 32 yv~~L~~~l~~L~~~~~~-~s~e~l~eY~~ri~~Lk~l~ 69 (251)
T PF09753_consen 32 YVETLREMLEELEESLSK-PSKEVLNEYSERIDFLKGLI 69 (251)
T ss_pred HHHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHHH
Confidence 467777777777665433 32332345555666555443
No 27
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.92 E-value=61 Score=29.76 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC----cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 022606 7 AVEKAKKEWDEAYAKTQAHIKAIENYG----KSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAP 72 (294)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~~i~~l~~~~----~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~ 72 (294)
-++.++.+...|..++..+-..+.... .....++.-......|...|+.-...+..+++++..+..
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 356667777777777766666665432 122223344667778888888888889999999988887
No 28
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=75.20 E-value=3.4 Score=31.98 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 022606 210 DIIDRVILVLGLILFSCAVLYVVSKRIGLLKL 241 (294)
Q Consensus 210 ~~~Dk~il~~~~~~fl~~i~~Ii~rRl~~~~l 241 (294)
.+-+|+|+.+|++.+.+|+.||.|-+--+=.+
T Consensus 33 ~kPNk~iM~~Gl~a~~~c~gYi~Ym~~~~en~ 64 (86)
T PF14937_consen 33 VKPNKPIMAFGLIAITLCVGYIAYMHATYENK 64 (86)
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34589999999999999999999988755443
No 29
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=75.10 E-value=64 Score=29.12 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcCCCC
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAA--QEERELLLGGGE 128 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~--~~eReeLL~~~~ 128 (294)
-+.++..|.....++...+...+.|...-...+..+. +.|-.+||++..
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~ 84 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKH 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455555555555555555555555543333333322 346678998753
No 30
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=75.03 E-value=3.8 Score=34.85 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=17.5
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHh
Q 022606 214 RVIL-VLGLILFSCAVLYVVSKRIG 237 (294)
Q Consensus 214 k~il-~~~~~~fl~~i~~Ii~rRl~ 237 (294)
.|++ ++|+++++|+++|++.|++|
T Consensus 120 ~i~~~i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 120 TILLSIGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444 44666778889999999876
No 31
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=75.01 E-value=44 Score=31.43 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHH
Q 022606 7 AVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSL 86 (294)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~r 86 (294)
.|+|...||.+...-.++.|..|.+.-. | ...+..|..+|..--..+...|.+++-.- ++.+.+ .+..
T Consensus 211 wfNgmksEWA~V~~AwkneLsEINSI~~-g------vEeLkKLAqEIss~Sn~lk~TIseLEKkF-kIdd~t----n~~e 278 (353)
T PF01540_consen 211 WFNGMKSEWARVQEAWKNELSEINSIIK-G------VEELKKLAQEISSHSNKLKATISELEKKF-KIDDST----NKEE 278 (353)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccc----chhH
Confidence 6888999999999999999999987421 2 26677888888888888899999888433 333333 2355
Q ss_pred HHHHHHHHHHHHHHH
Q 022606 87 LQSWKKECNNLRLSL 101 (294)
Q Consensus 87 V~~~k~dL~~Lr~~~ 101 (294)
++.||+++..|-..+
T Consensus 279 ~k~fK~qlE~ladqL 293 (353)
T PF01540_consen 279 MKKFKNQLENLADQL 293 (353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888888776554
No 32
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.98 E-value=20 Score=33.62 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 022606 151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQR 208 (294)
Q Consensus 151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~R 208 (294)
.++=+++...+.+.-+-|..++..|.+|++.|.+++..+..+...+..+.+.|+.|+.
T Consensus 78 l~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 78 LKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444455556677777999999999999999999999999999999999999998864
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.81 E-value=1.8e+02 Score=32.96 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=27.2
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHh
Q 022606 145 SAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQ 209 (294)
Q Consensus 145 ~~s~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR 209 (294)
.++.+|.++|+.+.+....--.--+.+-.++..-.+.|.+++++.......+......+..++++
T Consensus 1563 ~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~ 1627 (1758)
T KOG0994|consen 1563 GQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETR 1627 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555443332222222222333333334444444444444444444444444444443
No 34
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=71.26 E-value=76 Score=30.95 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=39.8
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHH
Q 022606 145 SAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTR 200 (294)
Q Consensus 145 ~~s~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~ 200 (294)
....++++.|....+.|++--...... .-|..-.++|.++..++..++=-||.-.
T Consensus 301 ~~L~~IseeLe~vK~emeerg~~mtD~-sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEERGSSMTDG-SPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 344578999999888876543333332 5688889999999999999887776543
No 35
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.85 E-value=93 Score=29.15 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 57 LNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 57 l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
...+...|+.|+--+.++ .........++++.+.++..|+.++....
T Consensus 47 ~~~~q~ei~~L~~qi~~~--~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 47 KKNIQNEIESLDNQIEEI--QSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444442 23356677888888888888888887744
No 36
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.32 E-value=45 Score=29.43 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=44.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 41 KSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 41 ~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
.....+..|+..+...-..+..+-+.++.....-+....|..+..++.+++.++..|+.++.+..
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555444444444455555544445567799999999999999999999998543
No 37
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=67.69 E-value=55 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 022606 214 RVILVLGLILFSCAVLYVVSKRIGLLKLQR 243 (294)
Q Consensus 214 k~il~~~~~~fl~~i~~Ii~rRl~~~~l~~ 243 (294)
+.++|+|+++++ +-|.++.|+=||-+.|
T Consensus 92 ~~~~w~gl~~l~--~q~~~l~rLTf~e~sW 119 (180)
T PF04678_consen 92 RRLLWGGLALLV--VQFGILARLTFWEYSW 119 (180)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhhcccc
Confidence 566777755543 5666666665544433
No 38
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=66.60 E-value=57 Score=25.07 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhH
Q 022606 4 VVEAVEKAKKEWDEAYAKTQAHIKAIENY-GKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQV 80 (294)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~i~~l~~~-~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r 80 (294)
+-++.+.|-.+...+-.++...-..+..+ .+ .. -+...+..+-..+.+.-..+.....++.+.+.++-+|.+|
T Consensus 50 l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~-~~---~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~LtpeQR 123 (125)
T PF13801_consen 50 LRALMDEFRQEMRALRQELRAARQELRALLAA-PP---PDEAAIEALLEEIREAQAELRQERLEHLLEIRAVLTPEQR 123 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-SS---S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHh
Confidence 33444555555555555555555555443 21 11 1233444444444444445555555555555554444444
No 39
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=66.38 E-value=57 Score=31.52 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022606 84 QSLLQSWKKECNNLRLSLR 102 (294)
Q Consensus 84 ~~rV~~~k~dL~~Lr~~~r 102 (294)
...++++++++.+.+..+.
T Consensus 67 ~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 67 RELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 4555556655555444443
No 40
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=66.04 E-value=40 Score=23.15 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHH
Q 022606 150 ITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLS 204 (294)
Q Consensus 150 ~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~ 204 (294)
-...|.+....+.+.-+.+..+...+.+|...|..+...+......+..+.+-+.
T Consensus 10 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~ 64 (66)
T smart00397 10 RDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLK 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3567777888888888899999999999999999999999999999888876554
No 41
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=65.79 E-value=14 Score=29.56 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 022606 214 RVILVLGLILFSCAVLYVVSKRIGLLKLQ 242 (294)
Q Consensus 214 k~il~~~~~~fl~~i~~Ii~rRl~~~~l~ 242 (294)
-|.+|+|.+|..++|+||+.-=++-+|-+
T Consensus 13 EwFLF~~AIFiAItIlYILLalL~EvPkY 41 (117)
T PF07234_consen 13 EWFLFFGAIFIAITILYILLALLFEVPKY 41 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 46677777888899999998777766543
No 42
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=61.90 E-value=16 Score=24.00 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 022606 212 IDRVILVLGLILFSCAVLYVVSK 234 (294)
Q Consensus 212 ~Dk~il~~~~~~fl~~i~~Ii~r 234 (294)
-|-++-+.++.+|++.++.|++.
T Consensus 7 ~dfylc~l~~llflv~imliif~ 29 (43)
T PF11395_consen 7 FDFYLCFLSFLLFLVIIMLIIFW 29 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777888888888777764
No 43
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=61.87 E-value=73 Score=24.68 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC----ChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 49 LNGLAQDGLNLLNSLHLKLDLLAPQLP----TSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 49 L~~~I~~~l~~l~~~ie~ldl~a~~~~----~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
...+|+..|..++.++.+........+ ....+..+...+...+.+|..|..++.-
T Consensus 6 v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 6 VKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777766665555432 1122445555566666666655555544
No 44
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=61.43 E-value=3.2 Score=39.07 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022606 214 RVILVLGLILFSCAVLYVVSKRIG 237 (294)
Q Consensus 214 k~il~~~~~~fl~~i~~Ii~rRl~ 237 (294)
.+|+++|+++|+++|+|+|||++.
T Consensus 279 piil~IG~vl~i~~Ig~~ifK~~~ 302 (305)
T PF04639_consen 279 PIILIIGGVLLIVFIGYFIFKRLM 302 (305)
T ss_pred HHHHHHHHHHHHHHhhheeeEeec
Confidence 577888888889999999999875
No 45
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=59.78 E-value=11 Score=30.95 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022606 215 VILVLGLILFSCAVLYVVSKRI 236 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~rRl 236 (294)
+||+++|++||++|+++-.||.
T Consensus 6 ~iii~~i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYCHNRRRR 27 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555566666666665
No 46
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=58.40 E-value=16 Score=31.85 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHH
Q 022606 225 SCAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 225 l~~i~~Ii~rRl~~~~l~~~~ 245 (294)
+++++|++.++++|-|+..++
T Consensus 40 ~F~iL~~ll~k~l~~PI~~~l 60 (181)
T PRK13454 40 TLVAIYFVLTRVALPRIGAVL 60 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566667888888886666
No 47
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=58.20 E-value=72 Score=23.41 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 022606 211 IIDRVILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 211 ~~Dk~il~~~~~~fl~~i~~Ii~ 233 (294)
..-||++...+..++.++++.++
T Consensus 48 ~n~kW~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 48 SNTKWIWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666555555443
No 48
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.10 E-value=1.4e+02 Score=27.17 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHH
Q 022606 149 SITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVI 216 (294)
Q Consensus 149 ~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~i 216 (294)
+...-|...++.|...+ +++-.-.+.|......-.+...+=..=++....|.++..-++|.
T Consensus 138 ~~n~el~~v~~im~~ni-------edvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a 198 (216)
T KOG0862|consen 138 KLNQELQDVQRIMVENL-------EDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA 198 (216)
T ss_pred HHHHHHHHHHHHHHHhH-------HHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455555555554443 34433333343333333333333344456667777777777766
No 49
>PRK09546 zntB zinc transporter; Reviewed
Probab=57.55 E-value=1.7e+02 Score=27.54 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 48 RLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 48 ~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
.+-......++.+.+.+++++..+.+.+.+. ..++-.+|.++-.++..+.-
T Consensus 150 ~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~-----~~~l~~lrr~l~~lrr~l~p 200 (324)
T PRK09546 150 ALTDHASEFIEELHDKIIDLEDNLLDQQIPP-----RGELALLRKQLIVMRRYMAP 200 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----HHHHHHHHHHHHHHHHHHHH
Confidence 3334444556677777777766554422121 13566666666666555443
No 50
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=57.44 E-value=6.2 Score=39.08 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 022606 210 DIIDRVILVLGLILFSCAVLYVVSK 234 (294)
Q Consensus 210 ~~~Dk~il~~~~~~fl~~i~~Ii~r 234 (294)
.++-|+|++.+++++|+.|+|+||.
T Consensus 3 ~krkK~lV~~lm~l~flg~~wlIF~ 27 (410)
T TIGR03779 3 QKRKKYLVLPLMGLVFLGSLWLIFA 27 (410)
T ss_pred ccccccchHHHHHHHHHHHHHHhcc
Confidence 4567899999999999999998884
No 51
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=57.28 E-value=1.4e+02 Score=27.16 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022606 9 EKAKKEWDEAYAKTQAHIKA-IENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQ 73 (294)
Q Consensus 9 ~~~~~~~~~l~~~~~~~i~~-l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~ 73 (294)
++||.||-++...+-.-|+. |...+.....+++....+.++...+-.--..+..++.++|.+++.
T Consensus 78 ~~yEweyl~~L~r~V~~cn~~I~~a~~~~~~t~ee~~kI~e~~e~~~~~d~sIg~lg~e~dalakr 143 (258)
T COG5200 78 EEYEWEYLRLLVRIVLSCNDGIRAAGLEDRTTPEEFGKIKEKEELFNRVDESIGELGMEGDALAKR 143 (258)
T ss_pred hhhhHHHHHHHHHHHHHhcchhhhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34888887766544333321 111111111223444444454444333333344444455554443
No 52
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=57.13 E-value=19 Score=30.10 Aligned_cols=30 Identities=3% Similarity=0.077 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 022606 213 DRVILVLGLILFSCAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 213 Dk~il~~~~~~fl~~i~~Ii~rRl~~~~l~~~~ 245 (294)
|..++|.++.|+ +++++.++++|-|+...+
T Consensus 4 ~~~~~~~~i~Fl---il~~il~~~~~~pi~~~l 33 (156)
T PRK05759 4 NGTLIGQLIAFL---ILVWFIMKFVWPPIMKAL 33 (156)
T ss_pred hHHHHHHHHHHH---HHHHHHHHHhHHHHHHHH
Confidence 445555554443 444557788888886666
No 53
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.67 E-value=3.4e+02 Score=30.73 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHhhHHHHHH
Q 022606 179 TGVLRKAESEYKGHRSLLM 197 (294)
Q Consensus 179 ~~tL~~t~~~~~~~~~~L~ 197 (294)
+..+..+..++..+...|.
T Consensus 517 ~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 517 RRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3333334444444444443
No 54
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=56.44 E-value=16 Score=28.43 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 022606 217 LVLGLILFSCAVLYVVSKRIGL 238 (294)
Q Consensus 217 l~~~~~~fl~~i~~Ii~rRl~~ 238 (294)
++++++.+++|++..+|+++-.
T Consensus 6 iv~~~~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555544
No 55
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=56.02 E-value=70 Score=29.07 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=3.1
Q ss_pred HHHhHHHH
Q 022606 165 VERNASTL 172 (294)
Q Consensus 165 le~g~~~L 172 (294)
+++++-.+
T Consensus 24 i~q~~~~~ 31 (251)
T COG5415 24 IHQLDVAL 31 (251)
T ss_pred HHHHHHHH
Confidence 33343333
No 56
>PRK14156 heat shock protein GrpE; Provisional
Probab=53.69 E-value=1.1e+02 Score=26.94 Aligned_cols=44 Identities=9% Similarity=0.189 Sum_probs=32.7
Q ss_pred HHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 65 LKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 65 e~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
+..+-.+.+.+...+-..++..++.++..+.+++++|.+.+-+.
T Consensus 21 ~~~~~~~~~~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~ 64 (177)
T PRK14156 21 ETVEEVVEETPEKSELELANERADEFENKYLRAHAEMQNIQRRA 64 (177)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556656556567889999999999999999999977443
No 57
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=53.14 E-value=22 Score=26.38 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 022606 216 ILVLGLILFSCAVLYVVSKRIGLL 239 (294)
Q Consensus 216 il~~~~~~fl~~i~~Ii~rRl~~~ 239 (294)
++..++.|++++++|++..-++++
T Consensus 9 i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 9 IIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777766666
No 58
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=52.74 E-value=76 Score=22.05 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhh
Q 022606 152 ESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQD 210 (294)
Q Consensus 152 ~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~ 210 (294)
+.|......+.+.=+.+..+-..+.+|...|....+.+......+..+.+=|....+..
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666677777788888899999999999999999999999999988888777654
No 59
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=51.27 E-value=1.8e+02 Score=25.84 Aligned_cols=107 Identities=12% Similarity=0.146 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--hHh---H
Q 022606 6 EAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPT--SDQ---V 80 (294)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~--~~~---r 80 (294)
.++|.|+.|-.+.-.-++.--.+|.+-..-......-.......-..++..+...+.++...+..+..... ... -
T Consensus 67 ~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLL 146 (188)
T PF05335_consen 67 QIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLL 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777776665555555555544210000000111122222233445667777777776666654211 111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLRLSLRNANLQAKANM 112 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~ 112 (294)
..++.||+.+..+|...+.+|.+.+-.+.+..
T Consensus 147 eaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~ 178 (188)
T PF05335_consen 147 EAAKRRVEELQRQLQAARADYEKTKKAAYKAA 178 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999988776554443
No 60
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=51.25 E-value=56 Score=24.68 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHH
Q 022606 51 GLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSL 101 (294)
Q Consensus 51 ~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~ 101 (294)
+..++.|.-.+.-|+-|-..++..|+++.+..++.++.+|....+.|+...
T Consensus 20 gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 20 GNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445556888888888888888998988889999999999999988888765
No 61
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=51.07 E-value=17 Score=25.04 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=17.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022606 209 QDIIDRVILVLGLILFSCAVLYVVSK 234 (294)
Q Consensus 209 R~~~Dk~il~~~~~~fl~~i~~Ii~r 234 (294)
|..-|-|.++.-+++|+++|+|..+.
T Consensus 8 r~~a~~~~l~~~~~~Figiv~wa~~p 33 (48)
T cd01324 8 RGLADSWGLLYLALFFLGVVVWAFRP 33 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44556666666667777888887653
No 62
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=51.07 E-value=11 Score=33.12 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=23.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022606 206 MQRQDIIDRVILVLGLILFSCAVLYVVSKRIGL 238 (294)
Q Consensus 206 i~RR~~~Dk~il~~~~~~fl~~i~~Ii~rRl~~ 238 (294)
..+|...-+ ++.++++|+.|++++|+|+-++|
T Consensus 78 v~~rlk~t~-lI~~alAfl~Cv~~Lv~YKa~wY 109 (186)
T PF06387_consen 78 VSERLKVTR-LIAFALAFLGCVVFLVMYKAIWY 109 (186)
T ss_pred cccccchhH-HHHHHHHHHHHHHHHHhheeeee
Confidence 344444444 45566788888889999999988
No 63
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=50.65 E-value=27 Score=29.95 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 022606 216 ILVLGLILFSCAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 216 il~~~~~~fl~~i~~Ii~rRl~~~~l~~~~ 245 (294)
.||..+.|+ ++++.++|.+++|-|+..++
T Consensus 11 ~~w~~i~f~-il~~iL~~~k~l~~pi~~~l 39 (167)
T PRK14475 11 EFWVGAGLL-IFFGILIALKVLPKALAGAL 39 (167)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhHHHHHHHH
Confidence 345443433 33333445788888886666
No 64
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=50.52 E-value=94 Score=23.29 Aligned_cols=53 Identities=9% Similarity=0.059 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 51 GLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 51 ~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
+...+.+.-...-|+.|-..+.-.|++..+..++.++.+|......|+..+.+
T Consensus 20 g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~ 72 (77)
T cd02683 20 GRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQ 72 (77)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445677777788888887777788888999999999999998888877654
No 65
>PRK10132 hypothetical protein; Provisional
Probab=50.23 E-value=1.3e+02 Score=24.16 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022606 181 VLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKR 235 (294)
Q Consensus 181 tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~rR 235 (294)
.|..+++++++........+........-...+-|--.++.+.+-+++.+++.||
T Consensus 53 ~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 53 LLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc
Confidence 5555666666555544444555554444444455555554444455666666665
No 66
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=50.19 E-value=1.2e+02 Score=23.55 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---ChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 42 SSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLP---TSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 42 ~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~---~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
-...+..+...+......++..|..|+......+ ++.. ..-+..++.+..++..+-.+|+.++
T Consensus 44 ~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~-r~~~~q~~~L~~~f~~~m~~fq~~Q 109 (117)
T smart00503 44 LREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASD-RTRKAQTEKLRKKFKEVMNEFQRLQ 109 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888876654321 1222 2224445555555555555555544
No 67
>PHA02902 putative IMV membrane protein; Provisional
Probab=49.95 E-value=27 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.596 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 213 DRVILVLGLILFSCAVLYVVSKRI 236 (294)
Q Consensus 213 Dk~il~~~~~~fl~~i~~Ii~rRl 236 (294)
|.+.+...+.+.+|.++|..|||-
T Consensus 4 dtfvi~~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 4 DTFVILAVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666777778888875
No 68
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=49.95 E-value=44 Score=26.65 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Q 022606 214 RVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIK 250 (294)
Q Consensus 214 k~il~~~~~~fl~~i~~Ii~rRl~~~~l~~~~~~~~~ 250 (294)
|..||+++++.++.|++||-.|++--. |.+.+-+|
T Consensus 15 K~~~FA~L~i~~FiILLIi~~~IW~~~--r~~r~~MK 49 (121)
T PF10669_consen 15 KIMFFAFLFIVVFIILLIITKSIWHDS--RQVRIRMK 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHH
Confidence 455565555556777778888876533 44444443
No 69
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.64 E-value=1.6e+02 Score=24.98 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHH
Q 022606 7 AVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSL 86 (294)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~r 86 (294)
--.....+..++-.+++..-..+.++.+... ...+...-..++..+..+...++.|..-... .++.++..+...
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-----~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~-vs~ee~~~~~~~ 153 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPT-----NEELREEIEELEEEIEELEEKLEKLRSGSKP-VSPEEKEKLEKE 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Confidence 3444555555666666666555655533221 1333333344444566666666666653333 335555554444
Q ss_pred HHHHHHHH
Q 022606 87 LQSWKKEC 94 (294)
Q Consensus 87 V~~~k~dL 94 (294)
...++..+
T Consensus 154 ~~~~~k~w 161 (169)
T PF07106_consen 154 YKKWRKEW 161 (169)
T ss_pred HHHHHHHH
Confidence 44444433
No 70
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=49.40 E-value=3e+02 Score=27.90 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022606 83 AQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 83 ~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
+..-.+.|+..+..+.....++.
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~ 430 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEAL 430 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 71
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=49.36 E-value=1.7e+02 Score=24.96 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=18.3
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022606 192 HRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVV 232 (294)
Q Consensus 192 ~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii 232 (294)
+++.+...+..++.-.+-.. +-+..++++|+.+|++++
T Consensus 104 i~~~~~~~~~~~~~~r~~a~---~nl~aa~~~~~aa~v~~~ 141 (144)
T PF11657_consen 104 IDNSLAEVNDLVREARKAAI---LNLVAAVLVLLAACVALW 141 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 55566665555544433332 444555455444444443
No 72
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=49.07 E-value=86 Score=29.00 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 022606 17 EAYAKTQAHIKAIENY 32 (294)
Q Consensus 17 ~l~~~~~~~i~~l~~~ 32 (294)
.+..++++.|..++.+
T Consensus 161 ~l~~eLqkr~~~v~~l 176 (289)
T COG4985 161 PLERELQKRLLEVETL 176 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556677777776654
No 73
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=48.55 E-value=2.4e+02 Score=26.62 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 44 NSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 44 ~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
..+..+-...-.-++.+...+++++..+...+. .....++-.++..+-.++..+..
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~----~~~l~~l~~l~~~l~~lr~~l~~ 198 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTT----NEELERLGELRRSLVYLRRALAP 198 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCcc----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555677777788888766666442 26677777888888777776655
No 74
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=48.37 E-value=22 Score=24.40 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022606 201 NLLSTMQRQDIIDRVILVLGLILFSCAVLYVV 232 (294)
Q Consensus 201 ~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii 232 (294)
+..+.+-||-++||.-+++.+++++++++-++
T Consensus 3 s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~ 34 (56)
T PF12911_consen 3 SPWKDAWRRFRRNKLAVIGLIILLILVLLAIF 34 (56)
T ss_pred CHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34566778888999988888666544444433
No 75
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=48.01 E-value=35 Score=27.47 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022606 2 DEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQ 73 (294)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~ 73 (294)
++|-..++....+|..+..++..+-..+..+.. ....+...+..++..|..+....+++-..|..
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~-------~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~ 85 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQA-------QLEELREEEESLQRALIQAQETADEIKAEAEE 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------T-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 456667788888888888888888888887752 22334444555556677777666666555554
No 76
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.93 E-value=1.9e+02 Score=25.37 Aligned_cols=8 Identities=0% Similarity=0.202 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 022606 8 VEKAKKEW 15 (294)
Q Consensus 8 ~~~~~~~~ 15 (294)
|+.|..-|
T Consensus 97 l~~y~~l~ 104 (189)
T PF10211_consen 97 LDAYQTLY 104 (189)
T ss_pred HHHHHHHH
Confidence 33333333
No 77
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.25 E-value=2.1e+02 Score=25.64 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhh---HHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCChHh
Q 022606 4 VVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNS---LQRL-NGLAQDGLNLLNSLHLKLDLLAPQLPTSDQ 79 (294)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~---l~~L-~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~ 79 (294)
|.+-++..|+.+.+||+.+...+..-..+...+. +-... +..- +..++.++..+-..+..++.+-..+- ...
T Consensus 9 i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~---~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~qv-~~l 84 (211)
T cd07598 9 IQERITNVEKHFGELCQDFAAYTRKTARLRDKGD---ELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQAEV-ERL 84 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3456677778888888777777776666532111 11111 1111 34566778888877777776655522 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRNANLQ 107 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ 107 (294)
...+-.-+..|-.-+.+.+..|+.+..+
T Consensus 85 ~~~v~epLk~Y~~l~k~~k~~~K~~~~a 112 (211)
T cd07598 85 EAKVVQPLALYGTICKHARDDLKNTFTA 112 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888889999999776543
No 78
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.18 E-value=1.1e+02 Score=22.51 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 52 LAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 52 ~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
.-.+.+.....-|+.|-..++..+++..+..++.++.+|......|+.-+.+
T Consensus 21 ~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK~~l~~ 72 (75)
T cd02678 21 NYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLKEYLAK 72 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444677778888888888877788888899999999999998888876643
No 79
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=47.17 E-value=14 Score=37.48 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 022606 7 AVEKAKKEWDEAYAKTQAHIKAIEN 31 (294)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~~i~~l~~ 31 (294)
..+.|++--.+|..=++..+..+..
T Consensus 49 ~l~~Y~~tl~~Ll~Pi~~~l~~~~~ 73 (490)
T PF00523_consen 49 ELDEYNNTLTELLTPIQDNLNRINR 73 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhc
Confidence 4566666666666666666666554
No 80
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=46.86 E-value=92 Score=22.27 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 79 QVQSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 79 ~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
+-+.+..+|+++..|...++.+...|.-.+
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999999999998887766544
No 81
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.14 E-value=2.9e+02 Score=29.78 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 43 SNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 43 ~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
...+..+..++......++...++++..-++.- ...++++...+++.+.+...+-.++++
T Consensus 531 ~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~-~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKELEQEMEELKERERNKK-LELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455555555555544333322 223455666666667666666666665
No 82
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=45.47 E-value=67 Score=23.00 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHH
Q 022606 51 GLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLS 100 (294)
Q Consensus 51 ~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~ 100 (294)
+..+..+.....-|+.|.......+++..|+.++.++.+|-.....++..
T Consensus 19 g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk~~ 68 (69)
T PF04212_consen 19 GNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLKEY 68 (69)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455677777777777777776677888889999999998887777653
No 83
>PRK11546 zraP zinc resistance protein; Provisional
Probab=45.37 E-value=1.9e+02 Score=24.56 Aligned_cols=62 Identities=10% Similarity=0.188 Sum_probs=29.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCCChH-hHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 41 KSSNSLQRLNGLAQDGLNLLNSLH----LKLDLLAPQLPTSD-QVQSAQSLLQSWKKECNNLRLSLR 102 (294)
Q Consensus 41 ~~~~~l~~L~~~I~~~l~~l~~~i----e~ldl~a~~~~~~~-~r~~~~~rV~~~k~dL~~Lr~~~r 102 (294)
+....++.|...-.+....++..+ .+|..+...-+|+. .-.++...+..++.+|...|..|+
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566655555555555554 34444434433333 223444444444444444444333
No 84
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=45.19 E-value=1.9e+02 Score=24.57 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
..-+.-+++||++++..-.....
T Consensus 42 kAQq~mL~~FkeelE~iasrW~~ 64 (144)
T PRK13895 42 KAQQEMLDQFKEELESIASRWGD 64 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34456677888888876655544
No 85
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=45.19 E-value=1.6e+02 Score=23.46 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=48.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 42 SSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 42 ~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
+++....+.. .+....+-+..++.....+|+..+-..++..+...+-+++.+...++...
T Consensus 33 ~~~~~~~l~~----~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 33 KREDIEKLEE----RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred cHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455555554 57778888899999999999888888999999999999999988887754
No 86
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.69 E-value=27 Score=25.32 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 022606 226 CAVLYVVSK 234 (294)
Q Consensus 226 ~~i~~Ii~r 234 (294)
++|+|.+|+
T Consensus 23 iavi~~ayr 31 (60)
T COG4736 23 IAVIYFAYR 31 (60)
T ss_pred HHHHHHHhc
Confidence 344444443
No 87
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=44.55 E-value=1.3e+02 Score=22.44 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=39.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 41 KSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNA 104 (294)
Q Consensus 41 ~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA 104 (294)
.....+..+..+|...+..++..|..|+..... +.....-...+.-.+.++..|...|+.+
T Consensus 42 ~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~---~~~~~~~~~~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 42 ELKRELDELTDEIKQLFQKIKKRLKQLSKDNED---SEGEEPSSNEVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCTT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999877421 0001111233444566677777777653
No 88
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=44.15 E-value=5.2e+02 Score=29.24 Aligned_cols=205 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHH----------HHHHHHHHHHHHHHHHHhhc
Q 022606 2 DEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNG----------LAQDGLNLLNSLHLKLDLLA 71 (294)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~----------~I~~~l~~l~~~ie~ldl~a 71 (294)
++..+--+.|++.-+..-.++.+.=.+++......... .+...+.+|+. +.++.+...++.+.+...-.
T Consensus 61 ~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~-~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l 139 (1109)
T PRK10929 61 KGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSV-PPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSL 139 (1109)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q ss_pred CCCCChHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----------------
Q 022606 72 PQLPTSDQVQSAQSLLQSWKKECNN------LRLSLRNANLQAKANMRKAAQEERELLLGGGE----------------- 128 (294)
Q Consensus 72 ~~~~~~~~r~~~~~rV~~~k~dL~~------Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~----------------- 128 (294)
...| ... .++..++.+.+.+|+. --...+.+.+.+....-+++....+..+.+..
T Consensus 140 ~~~p-q~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~ 217 (1109)
T PRK10929 140 SQLP-QQQ-TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRS 217 (1109)
T ss_pred hhch-hhH-HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q ss_pred ----------chhhhhhhhcchhhhhhhhHHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHh
Q 022606 129 ----------ESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMR 198 (294)
Q Consensus 129 ----------~~~~r~r~~~~~~~l~~~s~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~ 198 (294)
......+.....+..++.+...++........+.++.+....-.+.|.++++.+..+..+-..+.+.+..
T Consensus 218 ~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~ 297 (1109)
T PRK10929 218 QQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQ 297 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHh
Q 022606 199 TRNLLSTMQRQ 209 (294)
Q Consensus 199 S~~ll~~i~RR 209 (294)
-+...+.+.-+
T Consensus 298 ~~q~~~~i~eQ 308 (1109)
T PRK10929 298 VRQALNTLREQ 308 (1109)
T ss_pred HHHHHHHHHHH
No 89
>COG5605 Predicted small integral membrane protein [Function unknown]
Probab=44.02 E-value=69 Score=25.36 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHH-hhhhH
Q 022606 215 VILVLGLILFSCAVLYVV-SKRI-GLLKL 241 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii-~rRl-~~~~l 241 (294)
++...|..|.+.++-|++ |.++ ||++.
T Consensus 22 yl~vwgllfvlstlsylvdyfglqgylrw 50 (115)
T COG5605 22 YLKVWGLLFVLSTLSYLVDYFGLQGYLRW 50 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344445555566666655 6666 55543
No 90
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=43.16 E-value=5.3e+02 Score=28.99 Aligned_cols=89 Identities=12% Similarity=0.181 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHH
Q 022606 8 VEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLL 87 (294)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV 87 (294)
+-.|+++|..+...++..=..+.+|. ++......-++.++..+.+++..+.++-.++.... .+=..+...|
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~-------~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d--~Ei~~~r~~~ 346 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQ-------EKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQD--EEIEEARKDL 346 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh--HHHHHHHHHH
Confidence 44567777777766666666665554 12222222233334445555555555544444322 1123444555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022606 88 QSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 88 ~~~k~dL~~Lr~~~rkA~ 105 (294)
+.++.+...++..++.+.
T Consensus 347 ~~~~re~~~~~~~~~~~~ 364 (1074)
T KOG0250|consen 347 DDLRREVNDLKEEIREIE 364 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555554444443
No 91
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=43.15 E-value=36 Score=26.33 Aligned_cols=26 Identities=23% Similarity=0.389 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022606 209 QDIIDRVILVLGLILFSCAVLYVVSK 234 (294)
Q Consensus 209 R~~~Dk~il~~~~~~fl~~i~~Ii~r 234 (294)
.-..|-+++..|+++|+.+++||+.-
T Consensus 31 sfirdFvLVic~~lVfVii~lFi~ll 56 (84)
T PF06143_consen 31 SFIRDFVLVICCFLVFVIIVLFILLL 56 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888887777776543
No 92
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=42.74 E-value=26 Score=30.68 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022606 209 QDIIDRVILVLGLILFSCAVLYVVSKRIGL 238 (294)
Q Consensus 209 R~~~Dk~il~~~~~~fl~~i~~Ii~rRl~~ 238 (294)
+.-.+|-++.++-+|+|++++|+++++=..
T Consensus 31 ~~PREr~mL~g~Ga~L~Lvi~Y~~~WqP~~ 60 (181)
T COG3149 31 LPPRERKMLLGGGAFLLLVILYLLIWQPLS 60 (181)
T ss_pred CChHHHHHHHHhhHHHHHHHHHHHHhccHH
Confidence 344455555555577778888877665433
No 93
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=42.58 E-value=48 Score=27.67 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHH
Q 022606 225 SCAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 225 l~~i~~Ii~rRl~~~~l~~~~ 245 (294)
.++++|++.++++|-|+..++
T Consensus 16 ~Flil~~~l~kfl~kPi~~~l 36 (141)
T PRK08476 16 VFLLLIVILNSWLYKPLLKFM 36 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667778889999986666
No 94
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=42.47 E-value=42 Score=27.49 Aligned_cols=21 Identities=10% Similarity=0.081 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHH
Q 022606 225 SCAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 225 l~~i~~Ii~rRl~~~~l~~~~ 245 (294)
.+++++++.++++|-|+..++
T Consensus 14 ~flil~~ll~~~l~~pi~~~l 34 (140)
T PRK07353 14 QFVLLTFILNALFYKPVGKVV 34 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344677788889999987666
No 95
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=42.39 E-value=50 Score=21.15 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 022606 224 FSCAVLYVVSKRIGLLKLQR 243 (294)
Q Consensus 224 fl~~i~~Ii~rRl~~~~l~~ 243 (294)
++.+++.++|.-++++.|.|
T Consensus 14 iLt~~ILvFWfgvf~~fl~R 33 (34)
T PF08113_consen 14 ILTAFILVFWFGVFALFLAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhheec
Confidence 34445555566666666644
No 96
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=42.30 E-value=50 Score=21.58 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 022606 216 ILVLGLILFSCAVLYV 231 (294)
Q Consensus 216 il~~~~~~fl~~i~~I 231 (294)
++.+++++.++.+++|
T Consensus 16 Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 16 WIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444443444433
No 97
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=42.20 E-value=35 Score=29.22 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 022606 215 VILVLGLILFSCAVLYVVSKRIGL 238 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~rRl~~ 238 (294)
++..+.|++|+++|+|++|+.++.
T Consensus 10 ~~~~i~F~ill~ll~~~~~~pi~~ 33 (161)
T COG0711 10 LWQLIAFVILLWLLKKFVWKPILK 33 (161)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334445555556666666665544
No 98
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=41.30 E-value=3.7e+02 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
..++.++.+.+..+.++..++++
T Consensus 226 ~~~ks~i~ei~~sl~~l~d~lk~ 248 (464)
T KOG4637|consen 226 DKLKSRIREIHDSLTRLEDDLKA 248 (464)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 44566677777777777777766
No 99
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.61 E-value=3.8e+02 Score=28.89 Aligned_cols=59 Identities=22% Similarity=0.166 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 44 NSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 44 ~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
..+..+..+++..-..+....++++..-.+.- ...++++...++..+.+...+-.++++
T Consensus 537 ~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 537 EEAEALLKEAEKLKEELEEKKEKLQEEEDKLL-EEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333322 222344445555555555544444443
No 100
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=40.41 E-value=1.6e+02 Score=22.37 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhHHHHHHh-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 022606 181 VLRKAESEYKGHRSLLMR-TRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIG 237 (294)
Q Consensus 181 tL~~t~~~~~~~~~~L~~-S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~rRl~ 237 (294)
....+++++.+++..+-- ...+..++.++.=.|=-|+|+.++-++++++|+.+--++
T Consensus 16 d~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~~~~~ 73 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIILSPIF 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555532 234556777888889999999887777777776655544
No 101
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=40.16 E-value=2.4e+02 Score=24.26 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhC
Q 022606 21 KTQAHIKAIENYG 33 (294)
Q Consensus 21 ~~~~~i~~l~~~~ 33 (294)
+|...+..++.-|
T Consensus 3 DT~~~v~~Le~~G 15 (177)
T PF07798_consen 3 DTHKFVKRLEAAG 15 (177)
T ss_pred cHHHHHHHHHHCC
Confidence 4667777777654
No 102
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=40.04 E-value=1.4e+02 Score=21.60 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 52 LAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLR 102 (294)
Q Consensus 52 ~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~r 102 (294)
.-.+.+.....-|+.|...+...+++..+..+..++.+|......++..+.
T Consensus 23 ~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~ 73 (77)
T smart00745 23 DYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLL 73 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344467777788888877777767788888999999999998888877653
No 103
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=40.01 E-value=2.1e+02 Score=23.39 Aligned_cols=67 Identities=10% Similarity=-0.008 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 41 KSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLP----TSDQVQSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 41 ~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~----~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
.-+..+..+...+......++..|..|+......+ ++..| .-+..++.+..++...-..|..++...
T Consensus 41 ~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r-~~~~q~~~L~~~f~~~m~~fq~~Q~~~ 111 (151)
T cd00179 41 ELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDR-IRKTQHSGLSKKFVEVMTEFNKAQRKY 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888889999988876654321 12222 224445555556666666666655443
No 104
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=39.95 E-value=25 Score=21.65 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 022606 212 IDRVILVLGLILFSCAVLYVVSK 234 (294)
Q Consensus 212 ~Dk~il~~~~~~fl~~i~~Ii~r 234 (294)
...+++++|++++.+ .+|++.+
T Consensus 9 ~~~~~~~~G~~l~~~-~~~~~~~ 30 (34)
T TIGR01167 9 GNSLLLLLGLLLLGL-GGLLLRK 30 (34)
T ss_pred ccHHHHHHHHHHHHH-HHHHhee
Confidence 456777777744434 4444443
No 105
>PRK14159 heat shock protein GrpE; Provisional
Probab=39.91 E-value=1.6e+02 Score=25.80 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=25.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 77 SDQVQSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 77 ~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
+..-..++..++.++..+.+++++|.+.+-+.
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~ 60 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRM 60 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446788889999999999999999977543
No 106
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=39.73 E-value=1.7e+02 Score=22.29 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022606 4 VVEAVEKAKKEWDEAYAKTQAHI 26 (294)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~i 26 (294)
+.+++|....||+.+.++++..=
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k 24 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYK 24 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999998776543
No 107
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.12 E-value=2.9e+02 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLRLSLRNANLQ 107 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr~~~rkA~l~ 107 (294)
..+......+..++..|++.+|++.++
T Consensus 150 eei~~v~~~~~~e~~aLqa~lkk~e~~ 176 (207)
T PF05010_consen 150 EEIAQVRSKHQAELLALQASLKKEEMK 176 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444556778888888888888765
No 108
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=39.08 E-value=98 Score=21.25 Aligned_cols=25 Identities=4% Similarity=0.191 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
..++.+|..++.++.+|+.+|.+..
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888999999988887744
No 109
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.00 E-value=4.5e+02 Score=27.04 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=15.6
Q ss_pred hHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHH
Q 022606 174 TFDESTGVLRKAESEYKGHRSLLMRTRNLLSTM 206 (294)
Q Consensus 174 ~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i 206 (294)
.|..-...+..++++-.++-+.-..+-++|.-=
T Consensus 473 ~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYa 505 (560)
T PF06160_consen 473 QLEEAEDDVETLEEKTEELIDNATLAEQLIQYA 505 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445554444444445555555433
No 110
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=38.86 E-value=56 Score=28.13 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhhhHHHHH
Q 022606 226 CAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 226 ~~i~~Ii~rRl~~~~l~~~~ 245 (294)
++|++++.++++|-|+..++
T Consensus 28 FliL~~lL~~~l~~pi~~~l 47 (173)
T PRK13453 28 FIVLLALLKKFAWGPLKDVM 47 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556677788888886666
No 111
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=38.80 E-value=1.8e+02 Score=22.23 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=38.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 41 KSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 41 ~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
+-+..+..+...+.+.+..+...+.++..+ . .+.......+...+.+..|+..+-.+|.+++
T Consensus 30 ~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~--~-~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q 91 (102)
T PF14523_consen 30 ELREKIHQLIQKTNQLIKEISELLKKLNSL--S-SDRSNDRQQKLQREKLSRDFKEALQEFQKAQ 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666667777777777777777777666 1 1122234445666777777777777777755
No 112
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=38.47 E-value=44 Score=24.32 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 022606 217 LVLGLILFSCAVLYVVSKRIGLL 239 (294)
Q Consensus 217 l~~~~~~fl~~i~~Ii~rRl~~~ 239 (294)
+|..++|+.-..+|++|+-+||+
T Consensus 44 iWiVilFLtWf~lwm~fKiv~~f 66 (67)
T PF10854_consen 44 IWIVILFLTWFLLWMVFKIVGYF 66 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555666667778888888875
No 113
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=38.20 E-value=1.5e+02 Score=22.73 Aligned_cols=17 Identities=29% Similarity=0.174 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022606 220 GLILFSCAVLYVVSKRI 236 (294)
Q Consensus 220 ~~~~fl~~i~~Ii~rRl 236 (294)
.++++++++++++|.+.
T Consensus 19 l~~~v~~~a~~~v~~~~ 35 (97)
T PF04999_consen 19 LVIVVLISALGVVYSRH 35 (97)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444455444
No 114
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=37.56 E-value=43 Score=26.80 Aligned_cols=16 Identities=6% Similarity=0.343 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhhHHH
Q 022606 228 VLYVVSKRIGLLKLQR 243 (294)
Q Consensus 228 i~~Ii~rRl~~~~l~~ 243 (294)
|+|++..+++|-|+..
T Consensus 11 il~~~l~~~~~~pi~~ 26 (132)
T PF00430_consen 11 ILFFLLNKFLYKPIKK 26 (132)
T ss_dssp HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555533
No 115
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=37.30 E-value=66 Score=23.32 Aligned_cols=30 Identities=7% Similarity=0.134 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022606 200 RNLLSTMQRQDIIDRVILVLGLILFSCAVLY 230 (294)
Q Consensus 200 ~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~ 230 (294)
+.++++=.+|.+.-.++++++ +.++++.+|
T Consensus 30 ~eil~ker~R~r~~~~~~~li-~aLi~v~vv 59 (64)
T COG4068 30 GEILNKERKRQRNFMILMFLI-LALILVMVV 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 445555555555444444444 444343333
No 116
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.90 E-value=2.9e+02 Score=24.11 Aligned_cols=88 Identities=9% Similarity=0.151 Sum_probs=52.0
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHhhC-cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022606 2 DEVVE-AVEKAKKEWDEAYAKTQA--------HIKAIENYG-KSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLA 71 (294)
Q Consensus 2 ~~~~~-~~~~~~~~~~~l~~~~~~--------~i~~l~~~~-~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a 71 (294)
++++. ++++|--+|..+..+++. +.+.|.+++ +........+..+|+... |+.+-+.++.|-.++
T Consensus 65 e~v~~~~l~~f~~Q~~~tmeel~~~~~~~~~~k~~~LasLaDsf~K~vaaskr~lPets~-----LavA~~vl~~l~~fv 139 (165)
T PF08822_consen 65 EDVARQMLEDFVVQYQATMEELKENEDMPPQEKVELLASLADSFSKMVAASKRVLPETSE-----LAVAMEVLELLAAFV 139 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHhhcCchHHH-----HHHHHHHHHHHHHHH
Confidence 44444 889999999888888862 333444432 111111133445555554 556666677777777
Q ss_pred CCCCChHhHHHHHHHHHHHHHHHH
Q 022606 72 PQLPTSDQVQSAQSLLQSWKKECN 95 (294)
Q Consensus 72 ~~~~~~~~r~~~~~rV~~~k~dL~ 95 (294)
++.- |..-..+..-++-+..+|.
T Consensus 140 ~e~~-P~h~~af~eiLepFg~~l~ 162 (165)
T PF08822_consen 140 QERY-PQHLAAFLEILEPFGEELE 162 (165)
T ss_pred HhcC-HHHHHHHHHHHHHHHHHHH
Confidence 7633 5556677777777776664
No 117
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=36.83 E-value=11 Score=31.49 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022606 202 LLSTMQRQDIIDRVILVLGLILFSCAVLYVV 232 (294)
Q Consensus 202 ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii 232 (294)
+..........+|+++.++.++++++++|.+
T Consensus 4 l~~~w~~ls~REr~ll~~~~~~l~~~l~~~~ 34 (160)
T PF04612_consen 4 LKQWWQSLSPRERRLLLVLGVVLLLALLYLL 34 (160)
T ss_dssp -------------------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677778889988888777666666554
No 118
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=36.56 E-value=2.9e+02 Score=24.51 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022606 181 VLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVSKRIGL 238 (294)
Q Consensus 181 tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~rRl~~ 238 (294)
.+-+.+-.+..+++++. ...+++.++++-..-|.++..+..|+.+..++.-+--+|+
T Consensus 4 ~l~~is~aM~~l~~t~~-~~piL~~ie~~~~~~k~Y~~~~asf~~l~~lfs~vlG~g~ 60 (186)
T COG5052 4 QLVNISVAMLVLDNTLQ-AFPILREIENLYNRYKKYFMAGASFLYLLNLFSTVLGFGL 60 (186)
T ss_pred HHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 44555666666666664 4578899999999999999999888877777666555544
No 119
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=36.36 E-value=1.7e+02 Score=21.26 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHH
Q 022606 52 LAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSL 101 (294)
Q Consensus 52 ~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~ 101 (294)
.-.+.+.....-|+.|-..+...+++..+..+..++.+|-.....|+..+
T Consensus 21 ~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~~l 70 (75)
T cd02656 21 NYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKELL 70 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888777888888999999999998888887654
No 120
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=36.31 E-value=1.6e+02 Score=21.13 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 022606 12 KKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLP 75 (294)
Q Consensus 12 ~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~ 75 (294)
-.+|.++|......+...- ..+.....+.+..-..+|++++.++...+
T Consensus 4 w~~F~~a~~~~~~~~~~~~----------------~~~~~~~~~n~~~K~~Li~~~~~l~~~~d 51 (77)
T PF03993_consen 4 WKRFRAACDAFFDRRKEFF----------------EEQDAEREENLEKKEALIEEAEALAESED 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3455556555555554432 24444555578888899999999998744
No 121
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=36.14 E-value=54 Score=29.30 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 022606 227 AVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 227 ~i~~Ii~rRl~~~~l~~~~ 245 (294)
+++|++..+++|-|+..++
T Consensus 64 liL~~lL~k~~~~pI~~vL 82 (204)
T PRK09174 64 GLFYLFMSRVILPRIGGII 82 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666775555
No 122
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=36.12 E-value=1.6e+02 Score=20.88 Aligned_cols=31 Identities=6% Similarity=0.253 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022606 1 MDEVVEAVEKAKKEWDEAYAKTQAHIKAIEN 31 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~ 31 (294)
|..+...|..+..+.+...+++...+..+..
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~ 39 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSIDSLQA 39 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778888888888889999999988865
No 123
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=36.08 E-value=1.8e+02 Score=25.55 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHh-HHHHHHHHHHHHHHHHHHHHHH
Q 022606 47 QRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQ-VQSAQSLLQSWKKECNNLRLSL 101 (294)
Q Consensus 47 ~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~-r~~~~~rV~~~k~dL~~Lr~~~ 101 (294)
..|...+...-..++..|.+|+.....++.... -..++.+...+..+|..+...|
T Consensus 112 ~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 112 ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444433333221111 2346666666666666665554
No 124
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=35.77 E-value=5e+02 Score=26.63 Aligned_cols=102 Identities=14% Similarity=0.232 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCCC--
Q 022606 3 EVVEAVEKAKKEWDEAYAKTQAHIKAIENYG-KSREEKEKSSNSLQRLNG---LAQDGLNLLNSLHLKLDLLAPQLPT-- 76 (294)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~-~~~~~~~~~~~~l~~L~~---~I~~~l~~l~~~ie~ldl~a~~~~~-- 76 (294)
+|++.-+-.++-|.++..+.++.+....... +.. +-...+..|.. .....|..++++++.|-..+++...
T Consensus 292 k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~----~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~ 367 (622)
T COG5185 292 KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQ----EWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIST 367 (622)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCH
Confidence 5777778888889988888888777776542 111 11223333333 3345677788888877766666432
Q ss_pred ------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 77 ------SDQVQSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 77 ------~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
..+|.++-..++..+-+...|+.....-.+.+
T Consensus 368 e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~lea 405 (622)
T COG5185 368 EQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEA 405 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHH
Confidence 13456666666666666667766665544433
No 125
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=35.75 E-value=49 Score=22.45 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022606 215 VILVLGLILFSCAVLYVV 232 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii 232 (294)
+.+.+.+++|+++++|+.
T Consensus 13 ~~~v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444444
No 126
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=35.65 E-value=3.9e+02 Score=25.28 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHH
Q 022606 48 RLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSW 90 (294)
Q Consensus 48 ~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~ 90 (294)
.|...+...++.+...+++++..+...+ ...++.++.|+..+
T Consensus 154 ~L~~dl~~rl~~i~~~v~~i~~~~p~~~-~~~~~rL~~rl~el 195 (291)
T TIGR00255 154 NLKSDIVQRLDLIEREVKKVRSAMPDIL-QWQRERLKARIEDL 195 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHH
Confidence 4444444444444444444444444433 23344444444443
No 127
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=35.31 E-value=5.1e+02 Score=26.54 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
...+..++++++.++..+-..+.+++.++
T Consensus 348 le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555554443
No 128
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=35.04 E-value=28 Score=21.91 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.9
Q ss_pred ChhHHHHHHHHHHHHH
Q 022606 1 MDEVVEAVEKAKKEWD 16 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (294)
|++|..+|+.|..+|.
T Consensus 15 f~~~~~aF~aY~~~F~ 30 (32)
T PF05465_consen 15 FDDTQDAFEAYADEFA 30 (32)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4678889999998874
No 129
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=35.01 E-value=72 Score=27.02 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHH
Q 022606 225 SCAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 225 l~~i~~Ii~rRl~~~~l~~~~ 245 (294)
.++|++++.++++|-|+..++
T Consensus 17 nflil~~lL~~fl~kpi~~~l 37 (164)
T PRK14473 17 NFLLLIFLLRTFLYRPVLNLL 37 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566677888888886666
No 130
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=34.93 E-value=88 Score=21.78 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 022606 218 VLGLILFSCAVLYVVSKRIGLLKLQRQVTAA 248 (294)
Q Consensus 218 ~~~~~~fl~~i~~Ii~rRl~~~~l~~~~~~~ 248 (294)
+++++++++++++.+..|-..-|+.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~~pl~~l~~~~ 34 (70)
T PF00672_consen 4 LFLIILLLSLLLAWLLARRITRPLRRLSDAM 34 (70)
T ss_dssp HHHHHHHHHHHHHHH--HTTCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555667884554444
No 131
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.85 E-value=4e+02 Score=25.26 Aligned_cols=96 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHh
Q 022606 1 MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENY-GKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQ 79 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~-~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~ 79 (294)
+.+..+.++++-....+.++.+...+..+... ...+. .+...+..+.+ .|......|+.+.....++ ..+
T Consensus 168 L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~---~D~~eL~~lr~----eL~~~~~~i~~~k~~l~el--~~e 238 (325)
T PF08317_consen 168 LDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES---CDQEELEALRQ----ELAEQKEEIEAKKKELAEL--QEE 238 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---cCHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
...+...++....+...++.+...+.
T Consensus 239 l~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 239 LEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 132
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.78 E-value=2.7e+02 Score=23.15 Aligned_cols=79 Identities=9% Similarity=0.183 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHH
Q 022606 10 KAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQS 89 (294)
Q Consensus 10 ~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~ 89 (294)
=..|.....+..+.+++.++.. .+..-..++...|+.+...++++....... ..+-..++..+.+
T Consensus 36 vTrr~m~~A~~~v~kql~~vs~-------------~l~~tKkhLsqRId~vd~klDe~~ei~~~i--~~eV~~v~~dv~~ 100 (126)
T PF07889_consen 36 VTRRSMSDAVASVSKQLEQVSE-------------SLSSTKKHLSQRIDRVDDKLDEQKEISKQI--KDEVTEVREDVSQ 100 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHhhHHH
Confidence 3567777888888888877764 222333444445666666666655444432 2223455666666
Q ss_pred HHHHHHHHHHHHHH
Q 022606 90 WKKECNNLRLSLRN 103 (294)
Q Consensus 90 ~k~dL~~Lr~~~rk 103 (294)
.+.|+..++..++.
T Consensus 101 i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 101 IGDDVDSVQQMVEG 114 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666665
No 133
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.78 E-value=5.4e+02 Score=26.68 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHH
Q 022606 6 EAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQS 85 (294)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~ 85 (294)
++.+..++.|.+.-+..+..+.++++ ++ .+.+++..++.++. .++.+|.+-...+.
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~-----------~~-----------~~~~yk~~v~~i~~--~~ik~p~~i~~~~~ 219 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPN-----------KQ-----------DLEEYKKRLEAIKK--KDIKNPLELQKIKE 219 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-----------ch-----------hHHHHHHHHHHHHh--ccCCCHHHHHHHHH
Confidence 34555555555555555555555542 02 23333444444443 35556666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022606 86 LLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 86 rV~~~k~dL~~Lr~~~rkA~ 105 (294)
.++.++.+.+..+..++.+.
T Consensus 220 e~d~lk~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 220 EFDKLKKEGKADKQKIKSAK 239 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666666644
No 134
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=34.25 E-value=3.1e+02 Score=24.62 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 022606 5 VEAVEKAKKEWDEAYAKTQAHIKAIENYG 33 (294)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~i~~l~~~~ 33 (294)
-+.|+.+++.|..+-..++++...+..|.
T Consensus 11 D~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~ 39 (211)
T cd07588 11 DEVFDEHVNNFNKQQASANRLQKDLKNYL 39 (211)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999998874
No 135
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=34.16 E-value=82 Score=27.10 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHH
Q 022606 225 SCAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 225 l~~i~~Ii~rRl~~~~l~~~~ 245 (294)
.++++|++.+++++-|+.+++
T Consensus 19 ~FlILy~ll~kf~~ppI~~iL 39 (155)
T PRK06569 19 TFGLLYIFVYKFITPKAEEIF 39 (155)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 456677888888888887766
No 136
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.77 E-value=2e+02 Score=21.36 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 52 LAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLR 102 (294)
Q Consensus 52 ~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~r 102 (294)
...+.+.....-|+.+-..+...++|..|..++.++.+|-.....|+.-+.
T Consensus 21 ~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK~~l~ 71 (75)
T cd02684 21 DAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELKALIA 71 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334467777788888888887778888889999999999888887776554
No 137
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.72 E-value=6.2e+02 Score=27.07 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---------
Q 022606 1 MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLA--------- 71 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a--------- 71 (294)
|+++...|.+|++.-+-+.++++..+.++.+.. ....-...-.+.....+.....-++.++.+-
T Consensus 456 ~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~-------q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~ 528 (716)
T KOG4593|consen 456 MEELYREITGQKKRLEKLEHELKDLQSQLSSRE-------QSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLER 528 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------------CCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 72 -----------------PQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 72 -----------------~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
+.-|....++..+.+...+++++..|+.-++.
T Consensus 529 ~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~ 577 (716)
T KOG4593|consen 529 RLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTA 577 (716)
T ss_pred HHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 138
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=33.55 E-value=15 Score=24.43 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 022606 220 GLILFSCAVLYVVSKR 235 (294)
Q Consensus 220 ~~~~fl~~i~~Ii~rR 235 (294)
.+++.+++++|++|||
T Consensus 23 vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 23 VIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHhheEEec
Confidence 3344445555555665
No 139
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=33.23 E-value=65 Score=24.17 Aligned_cols=23 Identities=4% Similarity=0.324 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 022606 216 ILVLGLILFSCAVLYVVSKRIGL 238 (294)
Q Consensus 216 il~~~~~~fl~~i~~Ii~rRl~~ 238 (294)
++...+.+.+++++|++||..-.
T Consensus 13 L~ls~i~V~~~~~~wi~~Ra~~~ 35 (72)
T PF13268_consen 13 LLLSSILVLLVSGIWILWRALRK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666677788899998887744
No 140
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=33.11 E-value=82 Score=26.54 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 022606 227 AVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 227 ~i~~Ii~rRl~~~~l~~~~ 245 (294)
++++++.++++|-|+..++
T Consensus 16 ~il~~iL~~f~~kpi~~~l 34 (159)
T PRK13461 16 IILLLILKHFFFDKIKAVI 34 (159)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3444456777888886655
No 141
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=32.79 E-value=16 Score=34.29 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHHHHHhcccccCCCCccccccCCC-cccccccCCCCC-CCcccCCCC
Q 022606 241 LQRQVTAAIKAGMARQPEIRPGAAEDG-VNLAQVYRDNAA-PNMEVPLQR 288 (294)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~ 288 (294)
+=+|+.++.+-|..+-.++...+..|| +.++|=.+-++. |+|+++.++
T Consensus 61 ~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~ 110 (288)
T COG4814 61 LNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFED 110 (288)
T ss_pred HHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEec
Confidence 335677777777766677888888887 888887733333 999999874
No 142
>PHA02955 hypothetical protein; Provisional
Probab=32.57 E-value=45 Score=30.19 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=15.4
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 022606 213 DRVILV-LGLILFSCAVLYVVSKRIGL 238 (294)
Q Consensus 213 Dk~il~-~~~~~fl~~i~~Ii~rRl~~ 238 (294)
.+|+++ +++++++++++|.++|++.+
T Consensus 179 ~~w~ii~~v~ii~~~v~l~yikR~i~~ 205 (213)
T PHA02955 179 IKWFIIYIVLCLLILIILGYIYRTVRI 205 (213)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhee
Confidence 455444 44445555566888888754
No 143
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=32.56 E-value=30 Score=28.95 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhhHHHH
Q 022606 215 VILVLGLILFSCAVLYVVSKRI--GLLKLQRQ 244 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~rRl--~~~~l~~~ 244 (294)
.|+.+++++.+.+++|++|+.. -++|||-|
T Consensus 105 ~il~il~~i~is~~~~~~yr~~r~~~~~~~~~ 136 (139)
T PHA03099 105 GIVLVLVGIIITCCLLSVYRFTRRTKLPLQDM 136 (139)
T ss_pred HHHHHHHHHHHHHHHHhhheeeecccCchhhc
Confidence 4566667777778888887766 44677544
No 144
>PRK11820 hypothetical protein; Provisional
Probab=32.33 E-value=4.4e+02 Score=24.88 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHH
Q 022606 48 RLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSW 90 (294)
Q Consensus 48 ~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~ 90 (294)
.|...+...+..+...+++++..+...+ ..-|+.+..|+..+
T Consensus 152 ~L~~dl~~rl~~i~~~~~~i~~~~p~~~-~~~~~rL~~rl~el 193 (288)
T PRK11820 152 ALKADLLQRLDAIEALVAKIEALAPEIL-EEYRERLRERLEEL 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHH
Confidence 4445555555555555555555555433 33344444454444
No 145
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.25 E-value=6.6e+02 Score=26.93 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLRLSLRNANL 106 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr~~~rkA~l 106 (294)
.+.+..|+.++.++..++..+.+++.
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888653
No 146
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.98 E-value=3.9e+02 Score=24.25 Aligned_cols=52 Identities=17% Similarity=0.111 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 52 LAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 52 ~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
+++..|+.++...++|..+..+-.+..+.-++..++...+.++..++...+.
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677777777776555555444555556666666666666666555554
No 147
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=30.70 E-value=4.9e+02 Score=24.94 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHH
Q 022606 6 EAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQS 85 (294)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~ 85 (294)
++.+..+..|+.=|.++...+..++ ..|+.|..-. .+.++|..||.+ ++++.
T Consensus 57 eLLe~v~~rYqR~y~ema~~L~~Le-------------avLqRir~G~--------~LVekM~~YASD-------QEVLd 108 (324)
T PF12126_consen 57 ELLEAVEARYQRDYEEMAGQLGRLE-------------AVLQRIRTGG--------ALVEKMKLYASD-------QEVLD 108 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHhHH--------HHHHHHHHhcch-------HHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 022606 86 LLQSWKKECNNLRLS 100 (294)
Q Consensus 86 rV~~~k~dL~~Lr~~ 100 (294)
-=.-+++-|.+|+++
T Consensus 109 Mh~FlreAL~rLrqe 123 (324)
T PF12126_consen 109 MHGFLREALERLRQE 123 (324)
T ss_pred HHHHHHHHHHHhhhh
No 148
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=30.56 E-value=92 Score=26.35 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhHHHHH
Q 022606 226 CAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 226 ~~i~~Ii~rRl~~~~l~~~~ 245 (294)
++|+|++.++++|-|+..++
T Consensus 18 Flil~~ll~~~l~~pi~~~l 37 (164)
T PRK14471 18 FLILLLLLAKFAWKPILGAV 37 (164)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 34455557788888886666
No 149
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.28 E-value=56 Score=25.56 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 022606 213 DRVILVLGLILFSCAVLYVV 232 (294)
Q Consensus 213 Dk~il~~~~~~fl~~i~~Ii 232 (294)
|-|++.++.+|.+++++|++
T Consensus 34 gm~~lvI~~iFil~Vilwfv 53 (94)
T PF05393_consen 34 GMWFLVICGIFILLVILWFV 53 (94)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 44566666566666666665
No 150
>PHA02691 hypothetical protein; Provisional
Probab=29.95 E-value=57 Score=26.41 Aligned_cols=22 Identities=14% Similarity=-0.073 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHH
Q 022606 215 VILVLGLILFSCAV-LYVVSKRI 236 (294)
Q Consensus 215 ~il~~~~~~fl~~i-~~Ii~rRl 236 (294)
|++++.|+++|+++ +|+=|.+.
T Consensus 3 ~l~~l~fFi~FL~l~Y~~ny~PT 25 (110)
T PHA02691 3 WALEVALFAAFLAAAYVLTFLPT 25 (110)
T ss_pred hHHHHHHHHHHHHHHHHHhhccc
Confidence 55655555544444 44445544
No 151
>PF15106 TMEM156: TMEM156 protein family
Probab=29.91 E-value=83 Score=28.55 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHH
Q 022606 215 VILVLGLILFSCAVLYVVSKRI-GLLKLQRQVT 246 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~rRl-~~~~l~~~~~ 246 (294)
|++.+. ++|++.+++||||-+ +..+.|+|=+
T Consensus 178 WYvLVl-lVfiflii~iI~KIle~hrrvqkwq~ 209 (226)
T PF15106_consen 178 WYVLVL-LVFIFLIILIIYKILEGHRRVQKWQS 209 (226)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhhHhHHhh
Confidence 444433 556677788888877 6666666654
No 152
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.72 E-value=4.3e+02 Score=23.95 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhcC-CCCChHhHHHHHHHHHHHHHHHHH
Q 022606 59 LLNSLHLKLDLLAP-QLPTSDQVQSAQSLLQSWKKECNN 96 (294)
Q Consensus 59 ~l~~~ie~ldl~a~-~~~~~~~r~~~~~rV~~~k~dL~~ 96 (294)
.+...++.|+.++. ++|. ..++-..||+.++.-+.+
T Consensus 106 ~m~~m~~~L~~~v~~d~Pf--~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 106 LMEQMIDELEQFVELDLPF--LLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHhhhc
Confidence 45566777777666 4443 334445666666666653
No 153
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.54 E-value=51 Score=29.90 Aligned_cols=16 Identities=13% Similarity=0.908 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 022606 216 ILVLGLILFSCAVLYV 231 (294)
Q Consensus 216 il~~~~~~fl~~i~~I 231 (294)
+|++|++|++|+++|+
T Consensus 134 lIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 134 LIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555543
No 154
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=29.41 E-value=50 Score=28.32 Aligned_cols=27 Identities=26% Similarity=0.200 Sum_probs=12.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022606 207 QRQDIIDRVILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 207 ~RR~~~Dk~il~~~~~~fl~~i~~Ii~ 233 (294)
.||.+.--|++.++++++.+++..++|
T Consensus 2 n~r~r~Rl~~il~~~a~l~~a~~l~Ly 28 (153)
T COG2332 2 NRRRRKRLWIILAGLAGLALAVGLVLY 28 (153)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555555444444443
No 155
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=29.36 E-value=98 Score=19.13 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022606 215 VILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~ 233 (294)
|+.|.+.++-++.++|+++
T Consensus 3 ~~~wls~a~a~~Lf~YLv~ 21 (29)
T PRK14740 3 VLDWLSLALATGLFVYLLV 21 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666654
No 156
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=29.12 E-value=6.5e+02 Score=25.88 Aligned_cols=167 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHH
Q 022606 2 DEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQ 81 (294)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~ 81 (294)
++-.+.+.+++++..++-.........+.... ...+.+.+--..+.+.++.+......+......+.... .
T Consensus 344 ~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~-------~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E--~ 414 (569)
T PRK04778 344 ESELESVRQLEKQLESLEKQYDEITERIAEQE-------IAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDE--L 414 (569)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcchhhhhhhhHHHhHHHHHHHHHH
Q 022606 82 SAQSLLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLM 161 (294)
Q Consensus 82 ~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~~r~r~~~~~~~l~~~s~~~T~~L~rt~~~m 161 (294)
.++.++..|+..+..++..+++.++. .-.+..+..-..+.+.+.+....|
T Consensus 415 eAr~kL~~~~~~L~~ikr~l~k~~lp------------------------------gip~~y~~~~~~~~~~i~~l~~~L 464 (569)
T PRK04778 415 EAREKLERYRNKLHEIKRYLEKSNLP------------------------------GLPEDYLEMFFEVSDEIEALAEEL 464 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC------------------------------CCcHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHhHHHHH-hHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 022606 162 VQEVERNASTLM-TFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQR 208 (294)
Q Consensus 162 ~~~le~g~~~L~-~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~R 208 (294)
.. ........+ .+.+-...+....++..++-........+|.--+|
T Consensus 465 ~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nR 511 (569)
T PRK04778 465 EE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANR 511 (569)
T ss_pred cc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 157
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=29.03 E-value=68 Score=25.65 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022606 214 RVILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 214 k~il~~~~~~fl~~i~~Ii~ 233 (294)
||+..+..+|+++.++|++|
T Consensus 3 ~~~~~~l~~lvl~L~~~l~~ 22 (110)
T PF10828_consen 3 KYIYIALAVLVLGLGGWLWY 22 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555544444555555544
No 158
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=28.89 E-value=3.4e+02 Score=22.61 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCC--CChHh
Q 022606 3 EVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLK-LDLLAPQL--PTSDQ 79 (294)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~-ldl~a~~~--~~~~~ 79 (294)
+-+.+|+..=++=+.+-.+++..+.....--. + .-...+..+.+.+....+.+...+++ +.--.+.+ |...+
T Consensus 36 EG~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~--~---~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~d 110 (132)
T PF05597_consen 36 EGSKVFEALVKEGEKLEKKTRKKAEEQVEEAR--D---QVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKD 110 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 34455666655555555566555554432100 0 11233445555666666666666654 44444544 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRL 99 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~ 99 (294)
-..+..||+++..++..|..
T Consensus 111 v~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 111 VEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56888899998888887753
No 159
>PRK14164 heat shock protein GrpE; Provisional
Probab=28.52 E-value=3e+02 Score=25.01 Aligned_cols=32 Identities=6% Similarity=0.132 Sum_probs=26.2
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 76 TSDQVQSAQSLLQSWKKECNNLRLSLRNANLQ 107 (294)
Q Consensus 76 ~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ 107 (294)
++.+-..++..++.++.+|.+++++|.+.+-+
T Consensus 75 ~~~~~~~le~el~el~d~llR~~AE~eN~RkR 106 (218)
T PRK14164 75 DDGEASTVEAQLAERTEDLQRVTAEYANYRRR 106 (218)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999999999999997644
No 160
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.28 E-value=2.4e+02 Score=24.95 Aligned_cols=60 Identities=23% Similarity=0.272 Sum_probs=33.9
Q ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 44 NSLQRLNG---LAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 44 ~~l~~L~~---~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
.+++.|.+ ..++.+.++...|..++.+.+.+...-.-..++....++++++...+..+.+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 4446677777888888877777654333344445555555555555544444
No 161
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=28.21 E-value=79 Score=25.13 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 022606 226 CAVLYVVSK 234 (294)
Q Consensus 226 ~~i~~Ii~r 234 (294)
+++++..+|
T Consensus 36 c~c~~~~~r 44 (102)
T PF11669_consen 36 CCCACRHRR 44 (102)
T ss_pred HHHHHHHHH
Confidence 444444443
No 162
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=27.86 E-value=85 Score=21.00 Aligned_cols=19 Identities=26% Similarity=0.558 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022606 215 VILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~ 233 (294)
.||.+||+...++++|++.
T Consensus 19 vI~L~GF~~Vav~~~~lL~ 37 (42)
T PF09574_consen 19 VIILSGFAAVAVASIWLLS 37 (42)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5777787777777777764
No 163
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.83 E-value=77 Score=26.21 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 022606 216 ILVLGLILFSCAVLYV 231 (294)
Q Consensus 216 il~~~~~~fl~~i~~I 231 (294)
|++++|++.+.+|+.|
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 3334444444444443
No 164
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=27.63 E-value=96 Score=24.02 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 022606 212 IDRVILVLGLILFSCAVLYVVSKRIG 237 (294)
Q Consensus 212 ~Dk~il~~~~~~fl~~i~~Ii~rRl~ 237 (294)
.|.+++.+. +..+|.++|.+|||-.
T Consensus 4 ~Da~~~~V~-V~IVclliya~YRR~~ 28 (92)
T PHA02681 4 LDALLTVIV-ISIVCYIVIMMYRRSC 28 (92)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcc
Confidence 466666444 4445777888899874
No 165
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=27.51 E-value=85 Score=26.93 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 022606 227 AVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 227 ~i~~Ii~rRl~~~~l~~~~ 245 (294)
++++++.++++|-|+..++
T Consensus 27 lil~~iL~~~~~kpi~~~l 45 (173)
T PRK13460 27 LVVVLVLKKFAWDVILKAL 45 (173)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3444456667777775555
No 166
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=27.26 E-value=2.9e+02 Score=21.26 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 022606 15 WDEAYAKTQAHIKAIE 30 (294)
Q Consensus 15 ~~~l~~~~~~~i~~l~ 30 (294)
|-..+++|+..|..|.
T Consensus 6 F~~~v~~I~~~I~~i~ 21 (117)
T smart00503 6 FFEKVEEIRANIQKIS 21 (117)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 167
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=27.10 E-value=4.8e+02 Score=23.75 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHhhcCCCCChH
Q 022606 3 EVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRL----NGLAQDGLNLLNSLHLKLDLLAPQLPTSD 78 (294)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L----~~~I~~~l~~l~~~ie~ldl~a~~~~~~~ 78 (294)
+-+..+|+|=-++|.+.....++...+..-+. .-...+... +..++.+|..+...+..+..+-.- ..
T Consensus 18 ~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D------~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa---~v 88 (219)
T PF06730_consen 18 DRITNVEKHFGELCQLFAAYTRKTARLRDKGD------ELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQA---EV 88 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhH------HHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHH---HH
Confidence 34556788888888888888887776654221 000111110 012222455554444444333222 11
Q ss_pred hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 79 QV--QSAQSLLQSWKKECNNLRLSLRNANLQAKANMR 113 (294)
Q Consensus 79 ~r--~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~~ 113 (294)
+| .++-.-+..|...+++.+.+++++...-.+.+.
T Consensus 89 ~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEik 125 (219)
T PF06730_consen 89 ERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIK 125 (219)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 344455678999999999999988765444443
No 168
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.94 E-value=8.7e+02 Score=26.67 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022606 3 EVVEAVEKAKKEWDEAYAKTQAHIKAIENY-GKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQ 73 (294)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~-~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~ 73 (294)
+..++.++|-++....+++.+..|..+..- ...-+..++=...-.+|+..++..+.+...+-++++++-.+
T Consensus 643 ~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q 714 (970)
T KOG0946|consen 643 EQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ 714 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777665431 11111110112233345556666666555565665555443
No 169
>PRK14154 heat shock protein GrpE; Provisional
Probab=26.89 E-value=4.7e+02 Score=23.57 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 82 SAQSLLQSWKKECNNLRLSLRNANLQ 107 (294)
Q Consensus 82 ~~~~rV~~~k~dL~~Lr~~~rkA~l~ 107 (294)
.++.+++.++..+.+++++|.+++-+
T Consensus 63 ~le~e~~elkd~~lRl~ADfeNyRKR 88 (208)
T PRK14154 63 RMERKVDEYKTQYLRAQAEMDNLRKR 88 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777775533
No 170
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=26.61 E-value=77 Score=26.16 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhhHHHHH
Q 022606 228 VLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 228 i~~Ii~rRl~~~~l~~~~ 245 (294)
|++++.++++|-|+..++
T Consensus 7 il~~il~~~~~~pi~~~l 24 (147)
T TIGR01144 7 LLVWFCMKYVWPPLAKAI 24 (147)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456677777775555
No 171
>PF12669 P12: Virus attachment protein p12 family
Probab=26.44 E-value=63 Score=23.06 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 022606 226 CAVLYVVSKRIG 237 (294)
Q Consensus 226 ~~i~~Ii~rRl~ 237 (294)
++++|+++++++
T Consensus 10 ~~~~~v~~r~~~ 21 (58)
T PF12669_consen 10 AAVAYVAIRKFI 21 (58)
T ss_pred HHHHHHHHHHHH
Confidence 334455445444
No 172
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=26.38 E-value=2.7e+02 Score=20.62 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHh
Q 022606 56 GLNLLNSLHLKLDL 69 (294)
Q Consensus 56 ~l~~l~~~ie~ldl 69 (294)
.|..++..++++..
T Consensus 15 ~i~~i~~~~~~l~~ 28 (103)
T PF00804_consen 15 DIDKIKEKLNELRK 28 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 173
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=26.23 E-value=2.6e+02 Score=20.24 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC--cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHH
Q 022606 8 VEKAKKEWDEAYAKTQAHIKAIENYG--KSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQS 85 (294)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~i~~l~~~~--~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~ 85 (294)
+..|..+..++..=+...-..+.... ......+........+...|...=..+....+.-+.+... . |.....+..
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~-~-~~~~~~i~~ 80 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDS-G-PEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-HTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc-C-CCcHHHHHH
Confidence 45566666666666666665553321 1112122223333444444333333333333333333222 2 344567777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022606 86 LLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 86 rV~~~k~dL~~Lr~~~rk 103 (294)
+++.+...+..+......
T Consensus 81 ~~~~l~~~w~~l~~~~~~ 98 (105)
T PF00435_consen 81 KLEELNQRWEALCELVEE 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777766665544
No 174
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=26.19 E-value=3.2e+02 Score=21.40 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022606 2 DEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQ 73 (294)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~ 73 (294)
+++..+++.-..-|.+|+.-+.+.-..|...+ ...+..+....+.-+..+..+-.....+...
T Consensus 4 ~~L~~~L~~~~~~~~~L~~ll~~e~~~l~~~d---------~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~ 66 (143)
T PF05130_consen 4 EELIELLEEQIELLQELLELLEEEREALISGD---------IDELEELVEEKQELLEELRELEKQRQQLLAK 66 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888888888888888887532 2344444444444444444444444433333
No 175
>PRK14161 heat shock protein GrpE; Provisional
Probab=26.16 E-value=3.4e+02 Score=23.74 Aligned_cols=28 Identities=7% Similarity=0.092 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
..++..++.++..+.+++++|.+.+-+.
T Consensus 29 ~~l~~e~~elkd~~lR~~AefeN~rkR~ 56 (178)
T PRK14161 29 TALKAEIEELKDKLIRTTAEIDNTRKRL 56 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999998877443
No 176
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=26.16 E-value=85 Score=32.19 Aligned_cols=44 Identities=23% Similarity=0.129 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHhcccccCC
Q 022606 213 DRVILVLGLILFSCAVLYVVSKRI-----GLLKLQRQVTAAIKAGMARQ 256 (294)
Q Consensus 213 Dk~il~~~~~~fl~~i~~Ii~rRl-----~~~~l~~~~~~~~~~~~~~~ 256 (294)
-+..|++.+++.-++++.+++... =.+|+|.+++++|-.|+.+.
T Consensus 201 Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I~~Vi~lgm~E~ 249 (518)
T KOG2568|consen 201 PLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYITAVIALGMAET 249 (518)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555444333332222 22899999999999999873
No 177
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.06 E-value=3.2e+02 Score=23.19 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 53 AQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNA 104 (294)
Q Consensus 53 I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA 104 (294)
+++.+..++..+..+......+.....-..+...+.+++.++..+...+...
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544444433222223556666777777766666666553
No 178
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=25.98 E-value=1.3e+02 Score=23.17 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH
Q 022606 200 RNLLSTMQRQDIIDRVILVLGL 221 (294)
Q Consensus 200 ~~ll~~i~RR~~~Dk~il~~~~ 221 (294)
++++++..|+..--.+++.+++
T Consensus 2 k~i~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 2 KKILKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666666555555544
No 179
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=25.90 E-value=70 Score=25.18 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022606 214 RVILVLGLILFSCAVLYVVSKRIGLLK 240 (294)
Q Consensus 214 k~il~~~~~~fl~~i~~Ii~rRl~~~~ 240 (294)
||+++++|+.| +++++|--|++..|
T Consensus 3 kw~l~Lc~~SF--~~G~lft~R~W~~p 27 (95)
T PF13334_consen 3 KWVLLLCIASF--CAGMLFTNRMWTVP 27 (95)
T ss_pred hHHHHHHHHHH--HHHHHHhcccccCC
Confidence 67776665544 34444666776555
No 180
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.87 E-value=6.3e+02 Score=24.64 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHH
Q 022606 13 KEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLN 61 (294)
Q Consensus 13 ~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~ 61 (294)
++|..=+.+++.+-..|.+.-. .-+..|..|..+|...++.+.
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~------~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALP------ETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888877421 234667777776666665554
No 181
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=25.77 E-value=94 Score=26.67 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhhHHHHH
Q 022606 228 VLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 228 i~~Ii~rRl~~~~l~~~~ 245 (294)
+++++.++++|-|+..++
T Consensus 30 il~~lL~~~l~kpi~~~l 47 (175)
T PRK14472 30 IVLLILKKIAWGPILSAL 47 (175)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 444456677777876655
No 182
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.75 E-value=5.6e+02 Score=24.03 Aligned_cols=60 Identities=8% Similarity=0.107 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 44 NSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 44 ~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
-++.+++..|+..|..+...++++......+. ++-..+..+++.-+.||.+.++.+...+
T Consensus 158 ~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~--~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 158 LELNEIEKALKEAIKAVQQQLQQTQQQLNNLA--SDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888899999988888887777653 3457788899999999999999888855
No 183
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=25.72 E-value=2.3e+02 Score=25.31 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHH
Q 022606 56 GLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKE 93 (294)
Q Consensus 56 ~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~d 93 (294)
.+..+...|.++.--..+....+++-++..++.+++.+
T Consensus 183 ~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~~e 220 (221)
T PF14335_consen 183 QIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLKKE 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 45556666666655555555555555555555555544
No 184
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=25.62 E-value=1.2e+02 Score=22.98 Aligned_cols=23 Identities=4% Similarity=0.134 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 022606 213 DRVILVLGLILFSCAVLYVVSKR 235 (294)
Q Consensus 213 Dk~il~~~~~~fl~~i~~Ii~rR 235 (294)
+-.++.+++++|++.++-.+|-+
T Consensus 50 ev~l~l~ail~lL~a~Ya~fyl~ 72 (79)
T PF15168_consen 50 EVALVLAAILVLLLAFYAFFYLN 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666555555555444433
No 185
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=25.31 E-value=96 Score=22.42 Aligned_cols=19 Identities=21% Similarity=0.705 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 022606 212 IDRVILVLGLILFSCAVLY 230 (294)
Q Consensus 212 ~Dk~il~~~~~~fl~~i~~ 230 (294)
..||++.++|++||.-++|
T Consensus 9 mtriVLLISfiIlfgRl~Y 27 (59)
T PF11119_consen 9 MTRIVLLISFIILFGRLIY 27 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577777777666553333
No 186
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=25.15 E-value=3e+02 Score=20.75 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhHHHHHHhHHHHHH
Q 022606 179 TGVLRKAESEYKGHRSLLMRTRNLLS 204 (294)
Q Consensus 179 ~~tL~~t~~~~~~~~~~L~~S~~ll~ 204 (294)
..+|+++...+..+..+...+..||.
T Consensus 21 ~~~L~~a~~~~~~v~~~~~~t~~LLd 46 (78)
T PF08651_consen 21 IETLRSAKSNMNRVQETVESTNTLLD 46 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 187
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=24.81 E-value=5.6e+02 Score=23.74 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCCChHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 43 SNSLQRLNGLAQDGLNLLNSLHLKLDLL------APQLPTSDQVQSAQSLLQ-SWKKECNNLRLSLRNANLQAKANMRKA 115 (294)
Q Consensus 43 ~~~l~~L~~~I~~~l~~l~~~ie~ldl~------a~~~~~~~~r~~~~~rV~-~~k~dL~~Lr~~~rkA~l~ak~~~~~~ 115 (294)
...+..+++..++.|..+++-|+.=... ..-+ +...|+...+.++ .|++++.++..+.++-.-.-.......
T Consensus 128 ~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~l-fd~~keni~l~lE~~yre~~~~v~~E~K~~lDy~v~~e~~~ 206 (247)
T KOG3976|consen 128 EKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYL-FDVSKENIALQLEATYREQLVRVAKEVKRRLDYWVETEASK 206 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777666532111 1111 2444555555444 566666666666655332211112222
Q ss_pred HHHHHHhhcC
Q 022606 116 AQEERELLLG 125 (294)
Q Consensus 116 ~~~eReeLL~ 125 (294)
.+.+|+.|+.
T Consensus 207 rr~eqe~l~k 216 (247)
T KOG3976|consen 207 RRLEQEQLLK 216 (247)
T ss_pred HHHHHHHHHH
Confidence 2346777763
No 188
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.68 E-value=5.6e+02 Score=23.64 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHH
Q 022606 6 EAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQS 85 (294)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~ 85 (294)
++..-|...+.++-......-..+.... .+...+...-..++..|..++.....|+.-+.++. ..+..
T Consensus 188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~-------~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le-----~~~~~ 255 (312)
T PF00038_consen 188 ELEEWYQSKLEELRQQSEKSSEELESAK-------EELKELRRQIQSLQAELESLRAKNASLERQLRELE-----QRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred hhhhhcccccccccccccccccccchhH-------hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH-----HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022606 86 LLQSWKKECNNLRLSLRNANLQAKANMRKAAQEERELLL 124 (294)
Q Consensus 86 rV~~~k~dL~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL 124 (294)
.+..|...+..+...+..+......... +-++|+
T Consensus 256 ~~~~~~~~i~~le~el~~l~~~~~~~~~-----ey~~Ll 289 (312)
T PF00038_consen 256 EREEYQAEIAELEEELAELREEMARQLR-----EYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHH-----HHHHHH
No 189
>PRK14157 heat shock protein GrpE; Provisional
Probab=24.63 E-value=3.5e+02 Score=24.82 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
-..++.+++.++..|.+++.+|.+.+-+.
T Consensus 86 l~~le~e~~e~kd~llR~~AEfeNyRKR~ 114 (227)
T PRK14157 86 LGQAKKEAAEYLEALQRERAEFINYRNRT 114 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888999988876543
No 190
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.52 E-value=1e+02 Score=25.46 Aligned_cols=20 Identities=10% Similarity=-0.099 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022606 214 RVILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 214 k~il~~~~~~fl~~i~~Ii~ 233 (294)
-+|++++++-++++|++|+|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHH
Confidence 45566555555555555554
No 191
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.50 E-value=1e+03 Score=26.76 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhh-----------------hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCcccc
Q 022606 200 RNLLSTMQRQDII-----------------DRVILVLGLILFSCAVLYVVSKRIGLLKLQRQVTAAIKAGMARQPEIRPG 262 (294)
Q Consensus 200 ~~ll~~i~RR~~~-----------------Dk~il~~~~~~fl~~i~~Ii~rRl~~~~l~~~~~~~~~~~~~~~~~~~~~ 262 (294)
-.+|..|+|+-.. -||-..+--++--+.=.||+.-+.=-..|..++... +.++- -+++++.
T Consensus 478 ~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~-~~~~~-~ptIvvs 555 (1074)
T KOG0250|consen 478 PQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRL-KIPGN-RPTIVVS 555 (1074)
T ss_pred HHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHc-CCCCC-CCcEEEe
Confidence 3566666666554 577777776666666677776555444442222222 11111 2222111
Q ss_pred c-cCCCcccccccCCCCCCCc
Q 022606 263 A-AEDGVNLAQVYRDNAAPNM 282 (294)
Q Consensus 263 ~-~~~~~~~~~~~~~~~~~~~ 282 (294)
- +....++..-| +...|||
T Consensus 556 ~~~~~~y~~~~~p-~~~~pTi 575 (1074)
T KOG0250|consen 556 SFTPFDYSVGRNP-GYEFPTI 575 (1074)
T ss_pred cCCccccccccCC-CCCCCce
Confidence 1 11235566666 6666775
No 192
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=24.41 E-value=60 Score=31.18 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 022606 222 ILFSCAVLYVVSKRIG 237 (294)
Q Consensus 222 ~~fl~~i~~Ii~rRl~ 237 (294)
++|+++++||||+-+.
T Consensus 162 ii~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 162 IIFLLVLAFIVYSLFL 177 (318)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455677777766543
No 193
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=24.37 E-value=2.1e+02 Score=20.66 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHhcc
Q 022606 215 VILVLGLILFSCAVLYVVSKRI-GLLKLQRQVTAAIKA 251 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~rRl-~~~~l~~~~~~~~~~ 251 (294)
|+=++++.++++++..|..-|- ..-.+.|.+.+.+.+
T Consensus 3 WiS~~~iglMfisv~~i~~sR~Klk~~~lk~i~~~vAy 40 (58)
T PF10966_consen 3 WISFGAIGLMFISVILIYFSRYKLKGKFLKFIVSLVAY 40 (58)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 5667788888888888887775 333344655554443
No 194
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=24.22 E-value=1.2e+02 Score=26.03 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 022606 215 VILVLGLILFSCAVLYVVSKRIGLL 239 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~rRl~~~ 239 (294)
+|.++.|++|++++.+++|+.+..+
T Consensus 20 ~~~~i~Flil~~iL~~~~~kpi~~~ 44 (173)
T PRK13460 20 VWTLVTFLVVVLVLKKFAWDVILKA 44 (173)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445667777777788888888664
No 195
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=24.05 E-value=3.6e+02 Score=21.28 Aligned_cols=24 Identities=4% Similarity=0.140 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
=..-+.|..-++..|.|++.-+..
T Consensus 75 y~~~K~Rc~yL~~KL~HIK~~I~~ 98 (101)
T PF07303_consen 75 YQEKKKRCEYLHNKLSHIKQLIQD 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355577888888888888776543
No 196
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=24.01 E-value=3.5e+02 Score=24.79 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=30.5
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHH
Q 022606 142 GMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESE 188 (294)
Q Consensus 142 ~l~~~s~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~ 188 (294)
.++......++.|......+.+.++........|..++..|..+-+.
T Consensus 192 ~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~~l~~ 238 (291)
T TIGR00996 192 ALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALDDALAA 238 (291)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 34555566677777777777777777777777777666666554433
No 197
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=23.86 E-value=5.2e+02 Score=22.95 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=31.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 41 KSSNSLQRLNGLAQDGLNLLNSLHLK-LDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 41 ~~~~~l~~L~~~I~~~l~~l~~~ie~-ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
.+...+.++--.|...++.+...+++ +|.+-..++ ++..++..|..++.++..|-..+.+
T Consensus 72 ~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~e---q~~~~~~~v~~~~q~~~~l~~K~D~ 132 (189)
T TIGR02132 72 EDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQE---QAPALKKDVTKLKQDIKSLDKKLDK 132 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCchHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666665 444442221 2334455555556655555555444
No 198
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.81 E-value=1.2e+02 Score=25.99 Aligned_cols=25 Identities=4% Similarity=-0.088 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 022606 215 VILVLGLILFSCAVLYVVSKRIGLL 239 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~rRl~~~ 239 (294)
+|.++.|++|++++.+++|+.+..+
T Consensus 22 ~~~~i~Flil~~lL~~~l~kpi~~~ 46 (175)
T PRK14472 22 FWTAVTFVIVLLILKKIAWGPILSA 46 (175)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455666666777778888888654
No 199
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=23.80 E-value=1.5e+02 Score=22.87 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022606 214 RVILVLGLILFSCAVLYVVSKRI 236 (294)
Q Consensus 214 k~il~~~~~~fl~~i~~Ii~rRl 236 (294)
+.++.+.|++|.+.|+|+++.-+
T Consensus 28 ~~vvl~ml~~fa~l~ly~~~~ai 50 (85)
T PF13150_consen 28 LRVVLVMLVLFAALCLYMTVSAI 50 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777665443
No 200
>PRK14140 heat shock protein GrpE; Provisional
Probab=23.68 E-value=3.3e+02 Score=24.15 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 82 SAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 82 ~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
.++.+++.++..+.+++++|.+.+-+.
T Consensus 48 ~l~~ei~elkd~~lR~~Ae~eN~rkR~ 74 (191)
T PRK14140 48 ELEAKLDELEERYLRLQADFENYKRRI 74 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888766443
No 201
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=23.66 E-value=2.9e+02 Score=23.14 Aligned_cols=32 Identities=22% Similarity=0.100 Sum_probs=22.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 022606 206 MQRQDIIDRVILVLGLILFSCAVLYVVSKRIG 237 (294)
Q Consensus 206 i~RR~~~Dk~il~~~~~~fl~~i~~Ii~rRl~ 237 (294)
.+|=.++.+++.|++++++++.|+|+...-++
T Consensus 13 ~e~l~k~~~~~~~~~l~~~~~~~~y~~~~~~~ 44 (130)
T PF10864_consen 13 WERLKKQHLFWQWLFLFSLFLFFIYFYIKVIG 44 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566778888888887778887776665
No 202
>PHA02650 hypothetical protein; Provisional
Probab=23.55 E-value=1.3e+02 Score=22.99 Aligned_cols=15 Identities=13% Similarity=0.281 Sum_probs=7.9
Q ss_pred hHHHHHHhHHHHHHH
Q 022606 191 GHRSLLMRTRNLLST 205 (294)
Q Consensus 191 ~~~~~L~~S~~ll~~ 205 (294)
++.+-|..-+.+|+-
T Consensus 19 DFnnFI~VVkSVLtD 33 (81)
T PHA02650 19 DFNNFIDVVKSVLSD 33 (81)
T ss_pred HHHHHHHHHHHHHcC
Confidence 455555555555543
No 203
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=23.47 E-value=5.9e+02 Score=23.47 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=17.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 022606 77 SDQVQSAQSLLQSWKKECNNLRLSL 101 (294)
Q Consensus 77 ~~~r~~~~~rV~~~k~dL~~Lr~~~ 101 (294)
-.+-+.+...|+.++.+-..+....
T Consensus 148 VdeA~~~~~~~e~Lk~ek~~le~~~ 172 (254)
T PF03194_consen 148 VDEAQKLMEEVEKLKEEKEELEKEL 172 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345677888888888887777743
No 204
>PRK11637 AmiB activator; Provisional
Probab=23.37 E-value=7.1e+02 Score=24.40 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHH
Q 022606 150 ITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESE 188 (294)
Q Consensus 150 ~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~ 188 (294)
....|......+......-...+..+..+...|.....+
T Consensus 178 ~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 178 TREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555544444444
No 205
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=23.33 E-value=3.2e+02 Score=25.86 Aligned_cols=37 Identities=5% Similarity=0.096 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHh
Q 022606 213 DRVILVLGLILFSCAVLYVVSKRIGLL--KLQRQVTAAI 249 (294)
Q Consensus 213 Dk~il~~~~~~fl~~i~~Ii~rRl~~~--~l~~~~~~~~ 249 (294)
..|+.-++=++.++.|+||+..-+--+ .=|+.+...+
T Consensus 15 ~~Wm~TfADlmTLLm~FFVlL~S~S~~d~~Kfk~i~~sl 53 (302)
T PRK08944 15 PAWLATFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM 53 (302)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 589999998888999999988877553 2224454444
No 206
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.28 E-value=8.8e+02 Score=25.41 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=32.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHH
Q 022606 149 SITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTM 206 (294)
Q Consensus 149 ~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i 206 (294)
.++..|.||-...++.+=+-+.-=+.-..-=..|...|+.+..+-..+....++.+-|
T Consensus 523 ~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEi 580 (594)
T PF05667_consen 523 SLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREI 580 (594)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4566666666666666666555333333444455566666666555555555555433
No 207
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=23.23 E-value=1.4e+02 Score=23.03 Aligned_cols=11 Identities=18% Similarity=0.470 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 022606 220 GLILFSCAVLY 230 (294)
Q Consensus 220 ~~~~fl~~i~~ 230 (294)
|++|+|+++++
T Consensus 20 ~~VF~fL~lLi 30 (85)
T PRK03814 20 GVVFIFLTLLV 30 (85)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 208
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.09 E-value=6.6e+02 Score=23.94 Aligned_cols=92 Identities=24% Similarity=0.250 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCChHhHHHH
Q 022606 9 EKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAP-----QLPTSDQVQSA 83 (294)
Q Consensus 9 ~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~-----~~~~~~~r~~~ 83 (294)
-.|.+||..+-++..-+...|--++..=+..+.++.-+...-..++-.++.+.+ ++++++- ......+|+.+
T Consensus 12 ae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealer---e~eLlaa~gc~a~~e~gterqdL 88 (389)
T KOG4687|consen 12 AELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALER---ELELLAACGCDAKIEFGTERQDL 88 (389)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh---hhHHHHhcCCCchhhccchhhHH
Confidence 458888888888888777777765421111111122222222223333333333 3344443 23445678888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022606 84 QSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 84 ~~rV~~~k~dL~~Lr~~~rk 103 (294)
-.-+..+|.+-..|+++...
T Consensus 89 aa~i~etkeeNlkLrTd~ea 108 (389)
T KOG4687|consen 89 AADIEETKEENLKLRTDREA 108 (389)
T ss_pred HHHHHHHHHHhHhhhHHHHH
Confidence 88888888888888877543
No 209
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.96 E-value=4.8e+02 Score=22.26 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
.+....+++.++..+..+..+++...
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666654
No 210
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=22.94 E-value=4.7e+02 Score=22.14 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHhhC-cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHH
Q 022606 15 WDEAYAKTQAHIKAIENYG-KSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKE 93 (294)
Q Consensus 15 ~~~l~~~~~~~i~~l~~~~-~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~d 93 (294)
=+++|..|-.-++++-.++ ++.. ..-.+.-..|+.--..++.++..-|.....+| ++.+.+...-=..+.+|
T Consensus 8 ~D~Vy~at~~VVkaV~~Ls~~v~~------~~~~~y~~~VK~VG~~Lr~Ll~sVd~~~~~l~-~s~~~EVema~klL~~D 80 (139)
T PF03623_consen 8 NDKVYDATTGVVKAVMQLSNSVQT------AKPEEYVDLVKNVGLALRDLLTSVDQILPSLP-SSVRREVEMAHKLLSKD 80 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTT------SSHHHHHHHHHHHHHHHHHHHHHHHHHGGGSH-TTSHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHhhhcc------CChHHHHHHHHHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHH
Confidence 3567888888888887763 2211 11234444566667788999999998999887 45577777776788899
Q ss_pred HHHHHHHHHHHH
Q 022606 94 CNNLRLSLRNAN 105 (294)
Q Consensus 94 L~~Lr~~~rkA~ 105 (294)
+..|-...+.|+
T Consensus 81 M~eLi~~mklaq 92 (139)
T PF03623_consen 81 MAELISAMKLAQ 92 (139)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988888876
No 211
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=22.89 E-value=1.2e+02 Score=25.52 Aligned_cols=9 Identities=11% Similarity=-0.075 Sum_probs=4.3
Q ss_pred hhhhHHHHH
Q 022606 237 GLLKLQRQV 245 (294)
Q Consensus 237 ~~~~l~~~~ 245 (294)
+|-|+-.++
T Consensus 23 ~~~pi~~~l 31 (159)
T PRK09173 23 VPGMIARSL 31 (159)
T ss_pred hHHHHHHHH
Confidence 445554444
No 212
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=22.89 E-value=9.5e+02 Score=25.69 Aligned_cols=28 Identities=14% Similarity=-0.097 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022606 44 NSLQRLNGLAQDGLNLLNSLHLKLDLLA 71 (294)
Q Consensus 44 ~~l~~L~~~I~~~l~~l~~~ie~ldl~a 71 (294)
.........+....+.+...+.++.-.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 100 (968)
T TIGR02956 73 RQRQAIGKKLTLQSETLLHSLKALGELP 100 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4444555555555666666666665444
No 213
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=22.77 E-value=82 Score=25.57 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 022606 217 LVLGLILFSCAVLYVVSKRIGL 238 (294)
Q Consensus 217 l~~~~~~fl~~i~~Ii~rRl~~ 238 (294)
..+.|++|+++|+|+-|...-+
T Consensus 5 ~l~ffi~Fl~~~Y~~~y~PTNK 26 (109)
T PF06129_consen 5 YLIFFILFLVLCYFFNYYPTNK 26 (109)
T ss_pred HHHHHHHHHHHHHHHhhccchH
Confidence 3444555556667766666544
No 214
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.55 E-value=8.6e+02 Score=25.02 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCh
Q 022606 2 DEVVEAVEKAKKEWDEAYA----KTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTS 77 (294)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~----~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~ 77 (294)
++..+-|+.+...|.++.. ++...+-.++.+.. +..-..-+..+..++..+...-..+....+.++.+....
T Consensus 56 Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~-~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e--- 131 (560)
T PF06160_consen 56 GQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYAD-KYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESE--- 131 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 5667789999999999883 35555555555421 100002234444444433333333333334444333331
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 78 DQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 78 ~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
..-+..|..++..+..+|..+-.
T Consensus 132 ---~~nr~~i~~l~~~y~~lrk~ll~ 154 (560)
T PF06160_consen 132 ---EKNREEIEELKEKYRELRKELLA 154 (560)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345555666666655555533
No 215
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=22.49 E-value=1.2e+02 Score=19.53 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 022606 215 VILVLGLILFSCAVLY 230 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~ 230 (294)
+-.++|++.|+++++|
T Consensus 10 lan~lG~~~~~LIVlY 25 (35)
T PF10215_consen 10 LANFLGVAAMVLIVLY 25 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 216
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=22.24 E-value=3.4e+02 Score=20.27 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=32.4
Q ss_pred HHHHHHHHhhHHHHHHh-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022606 182 LRKAESEYKGHRSLLMR-TRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 182 L~~t~~~~~~~~~~L~~-S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~ 233 (294)
.+..++++..++..+-- ...+..++.++.=.|=-|+|+.++=++++++|++.
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~l 66 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYILL 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555432 33456677778888988999887666665555543
No 217
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.21 E-value=1e+03 Score=25.72 Aligned_cols=25 Identities=16% Similarity=-0.102 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 022606 210 DIIDRVILVLGLILFSCAVLYVVSK 234 (294)
Q Consensus 210 ~~~Dk~il~~~~~~fl~~i~~Ii~r 234 (294)
--..||+...+++.+++.|+.+++.
T Consensus 409 y~~yR~~~~lil~~~llLIv~~~~l 433 (806)
T PF05478_consen 409 YDSYRWIVGLILCCVLLLIVLCLLL 433 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777766666555555444443
No 218
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=22.17 E-value=1.1e+02 Score=24.33 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 022606 215 VILVLGLILFSCAVLYVVSKRIGLL 239 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~rRl~~~ 239 (294)
++.++.|++|++++.|++|+.+..+
T Consensus 3 ~~~~i~Flil~~~l~~~~~~pi~~~ 27 (132)
T PF00430_consen 3 FWQLINFLILFFLLNKFLYKPIKKF 27 (132)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777788888888888553
No 219
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=21.96 E-value=6.5e+02 Score=28.44 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHH
Q 022606 10 KAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQS 89 (294)
Q Consensus 10 ~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~ 89 (294)
+.-+.|.....+|+..-..+++++.. +-+.+-.++...++.....+...|..+...+.+..+..+++.+-..++.
T Consensus 15 r~lk~~~~~v~kIn~le~~~~~LSDe-----eLr~kT~efk~rl~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~id~ 89 (1112)
T PRK12901 15 RDLKEIQPIVEKIKAEYPELEALSND-----ELRAKTDEFKQYIKEAVADIDAKIEELKAEAIESLDIDEREDIYAQIDK 89 (1112)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhCCHH-----HHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccccchhhhhHHHHHHHH
Confidence 34566777788888887777777631 3456667777777777777888888877777666667788999999998
Q ss_pred HHHHHHHH
Q 022606 90 WKKECNNL 97 (294)
Q Consensus 90 ~k~dL~~L 97 (294)
+++++...
T Consensus 90 ~~~~~~~~ 97 (1112)
T PRK12901 90 LEKEAYEI 97 (1112)
T ss_pred HHHHHHHH
Confidence 88887644
No 220
>PRK13665 hypothetical protein; Provisional
Probab=21.94 E-value=1.3e+02 Score=28.42 Aligned_cols=6 Identities=50% Similarity=0.512 Sum_probs=2.3
Q ss_pred HHHhcc
Q 022606 246 TAAIKA 251 (294)
Q Consensus 246 ~~~~~~ 251 (294)
...|++
T Consensus 60 ~~~I~a 65 (316)
T PRK13665 60 NPLIKA 65 (316)
T ss_pred HHHHHH
Confidence 334433
No 221
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=21.81 E-value=1.9e+02 Score=17.25 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022606 82 SAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 82 ~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
.+..++.+|..||...+.....
T Consensus 2 ~Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhc
Confidence 3567788899998888776654
No 222
>PRK14148 heat shock protein GrpE; Provisional
Probab=21.59 E-value=3.1e+02 Score=24.41 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLRLSLRNANL 106 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr~~~rkA~l 106 (294)
..++..++.++..+.+++++|.+.+-
T Consensus 50 ~~l~~e~~elkd~~lR~~Ae~eN~rK 75 (195)
T PRK14148 50 KELEDSCDQFKDEALRAKAEMENIRK 75 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777553
No 223
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=21.43 E-value=5.2e+02 Score=22.05 Aligned_cols=67 Identities=10% Similarity=0.172 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-Ccch----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022606 7 AVEKAKKEWDEAYAKTQAHIKAIENY-GKSR----EEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQ 73 (294)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~~i~~l~~~-~~~~----~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~ 73 (294)
++...|++=..+.+.+...+..+... .... +..+--+.....+...+...+.....+|.+.+.+-++
T Consensus 53 ~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~ 124 (149)
T PF10157_consen 53 VLHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNES 124 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666555555555442 1100 1111223444444455555555555555555544444
No 224
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.31 E-value=3.1e+02 Score=25.11 Aligned_cols=28 Identities=14% Similarity=-0.028 Sum_probs=15.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022606 203 LSTMQRQDIIDRVILVLGLILFSCAVLY 230 (294)
Q Consensus 203 l~~i~RR~~~Dk~il~~~~~~fl~~i~~ 230 (294)
-..+.=....|+++.|..++.|+++++.
T Consensus 14 ~q~y~~trk~dp~l~~~ml~a~l~~~~v 41 (224)
T PF13829_consen 14 WQAYKMTRKEDPKLPWLMLGAFLGPIAV 41 (224)
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHHHH
Confidence 3334444556777777766666544433
No 225
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=21.30 E-value=1.2e+02 Score=20.20 Aligned_cols=19 Identities=11% Similarity=0.443 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022606 215 VILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~ 233 (294)
.|+.+||+...++++|++.
T Consensus 19 vIil~GF~~Va~~si~lLs 37 (42)
T TIGR02808 19 FIILSGFVAVAVTSILLLN 37 (42)
T ss_pred hHHhhhhHHHHHHHHHHHH
Confidence 5777787777777777764
No 226
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.30 E-value=4.1e+02 Score=25.23 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHH-HhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 56 GLNLLNSLHLKL-DLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 56 ~l~~l~~~ie~l-dl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
.|..|+..+-+| +.++.+.. -|-+++..+++-+++++.|++-....+
T Consensus 90 EI~eLksQL~RMrEDWIEEEC---HRVEAQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 90 EIDELKSQLARMREDWIEEEC---HRVEAQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888 67777755 377778888888888888887765533
No 227
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=21.06 E-value=2e+02 Score=30.41 Aligned_cols=20 Identities=15% Similarity=0.281 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 022606 213 DRVILVLGLILFSCAVLYVV 232 (294)
Q Consensus 213 Dk~il~~~~~~fl~~i~~Ii 232 (294)
...|++++|++.|+++++||
T Consensus 389 ~t~~~~~~f~~if~iva~ii 408 (807)
T KOG1094|consen 389 PTAILIIIFVAIFLIVALII 408 (807)
T ss_pred CceehHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 228
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=21.04 E-value=1.5e+02 Score=24.73 Aligned_cols=27 Identities=15% Similarity=-0.014 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 022606 215 VILVLGLILFSCAVLYVVSKRIGLLKL 241 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii~rRl~~~~l 241 (294)
++++..++++++++..+++.|--++|+
T Consensus 3 ylly~~~~~~~i~~t~lf~~R~r~~~~ 29 (128)
T PF09435_consen 3 YLLYSLTFFVLIIGTLLFFTRHRWLPL 29 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555666555543
No 229
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=21.01 E-value=5.1e+02 Score=21.83 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 022606 4 VVEAVEKAKKEWDEAYAKTQAHIKAIENYG 33 (294)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~ 33 (294)
|...+.+|++.+..-++++...+..++...
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t 52 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNST 52 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhh
Confidence 567888999999999999999999988753
No 230
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=20.91 E-value=1.6e+02 Score=25.93 Aligned_cols=35 Identities=9% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHH
Q 022606 202 LLSTMQRQDIIDRVILVLGLILF-SCAVLYVVSKRI 236 (294)
Q Consensus 202 ll~~i~RR~~~Dk~il~~~~~~f-l~~i~~Ii~rRl 236 (294)
|......+.-.++.++.++.+++ +++++|.||.-+
T Consensus 25 ~~~~W~~ls~REq~ll~~~g~vL~l~i~Y~~iWqPl 60 (178)
T PRK09731 25 LAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPL 60 (178)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33445555555555555554444 455555555433
No 231
>PRK14153 heat shock protein GrpE; Provisional
Probab=20.88 E-value=6e+02 Score=22.61 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRNANLQ 107 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ 107 (294)
-..++.+++.++..+.+++++|.+.+-+
T Consensus 42 i~~l~~e~~elkd~~lR~~AEfeN~rKR 69 (194)
T PRK14153 42 TEKCREEIESLKEQLFRLAAEFDNFRKR 69 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999886644
No 232
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=20.80 E-value=1.7e+02 Score=26.65 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhhHHHHH
Q 022606 226 CAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 226 ~~i~~Ii~rRl~~~~l~~~~ 245 (294)
++|++++.++++|-|+..++
T Consensus 15 Flil~~lL~kfl~kPi~~~l 34 (246)
T TIGR03321 15 FLILVWLLKRFLYRPILDAM 34 (246)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 44555667788888886666
No 233
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.74 E-value=7.2e+02 Score=23.76 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 022606 56 GLNLLNSLHLKLDLLAPQ 73 (294)
Q Consensus 56 ~l~~l~~~ie~ldl~a~~ 73 (294)
.|.+--..+++|-.+|+.
T Consensus 53 ~is~T~~kl~kLa~lAKr 70 (311)
T KOG0812|consen 53 EISQTGAKLEKLAQLAKR 70 (311)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344444444444444443
No 234
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.71 E-value=1.7e+02 Score=26.90 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhhHHHHH
Q 022606 226 CAVLYVVSKRIGLLKLQRQV 245 (294)
Q Consensus 226 ~~i~~Ii~rRl~~~~l~~~~ 245 (294)
++|++++.++|+|-|+..++
T Consensus 15 FlILv~lL~~fl~kPi~~~l 34 (250)
T PRK14474 15 FLILVYLLRRFLYKPIIQVM 34 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555677889998986666
No 235
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=20.66 E-value=1.5e+02 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022606 217 LVLGLILFSCAVLYVVSKRIG 237 (294)
Q Consensus 217 l~~~~~~fl~~i~~Ii~rRl~ 237 (294)
.++++++++++++-|+.+|..
T Consensus 5 ~il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544443
No 236
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=20.54 E-value=33 Score=21.92 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 022606 213 DRVILVLGLILFSCAVLYVVSKR 235 (294)
Q Consensus 213 Dk~il~~~~~~fl~~i~~Ii~rR 235 (294)
..+++++|++++++..++++.||
T Consensus 17 ~~~~~~~G~l~~~~~~~~~~krr 39 (39)
T PF00746_consen 17 NSILTILGALLLLGGGLLLVKRR 39 (39)
T ss_dssp -----------------------
T ss_pred CHHHHHHHHHHHHHHHHHheecC
Confidence 34455556544444444444443
No 237
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=20.46 E-value=1.6e+02 Score=24.66 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 022606 216 ILVLGLILFSCAVLYVVSKRIGLL 239 (294)
Q Consensus 216 il~~~~~~fl~~i~~Ii~rRl~~~ 239 (294)
+.++.|++|++++.+++|+.+..+
T Consensus 10 ~~~inF~il~~iL~~f~~kpi~~~ 33 (159)
T PRK13461 10 ATIINFIILLLILKHFFFDKIKAV 33 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444566667777778888888553
No 238
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=20.43 E-value=7.4e+02 Score=23.47 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=25.2
Q ss_pred HhhhHHHHHHHHHHhhHHHHHHhHHH-HHHHHHHhhhhhHHHHHH
Q 022606 176 DESTGVLRKAESEYKGHRSLLMRTRN-LLSTMQRQDIIDRVILVL 219 (294)
Q Consensus 176 ~~q~~tL~~t~~~~~~~~~~L~~S~~-ll~~i~RR~~~Dk~il~~ 219 (294)
.+|...+.....-+......+..+++ |.+...-+-.+.||-+++
T Consensus 219 ~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~ 263 (283)
T COG5325 219 GEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYL 263 (283)
T ss_pred HHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhH
Confidence 56777777777766666655655444 444444444445554443
No 239
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.36 E-value=4.8e+02 Score=21.26 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRNA 104 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rkA 104 (294)
..-+..+++.+...+..+...+...
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~ 120 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKL 120 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666655553
No 240
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=20.35 E-value=3.9e+02 Score=20.23 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhh-CcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHH
Q 022606 18 AYAKTQAHIKAIENY-GKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNN 96 (294)
Q Consensus 18 l~~~~~~~i~~l~~~-~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~ 96 (294)
.+.+++..+..++.. +.+|. ..+.+++...|...+..++.++........++.. ......--...+.....
T Consensus 4 ~l~~in~~v~~l~k~~~~lGt-----~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~---~~~~~~~~~~~k~~~~K 75 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLGT-----PRDSQELREKIHQLIQKTNQLIKEISELLKKLNS---LSSDRSNDRQQKLQREK 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH-S-----SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHH
Confidence 456666777777664 33332 2566777777777777777777766655555321 11122233456778888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022606 97 LRLSLRNANLQAKANMRK 114 (294)
Q Consensus 97 Lr~~~rkA~l~ak~~~~~ 114 (294)
|..+|..+...-....+.
T Consensus 76 L~~df~~~l~~fq~~q~~ 93 (102)
T PF14523_consen 76 LSRDFKEALQEFQKAQRR 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889998877654444333
No 241
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=20.35 E-value=1.1e+02 Score=23.70 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 022606 216 ILVLGLILFS 225 (294)
Q Consensus 216 il~~~~~~fl 225 (294)
.||.++++|+
T Consensus 41 ~FWv~LA~FV 50 (90)
T PF15183_consen 41 AFWVSLAAFV 50 (90)
T ss_pred hHHHHHHHHH
Confidence 4555555543
No 242
>PRK10869 recombination and repair protein; Provisional
Probab=20.32 E-value=9.5e+02 Score=24.68 Aligned_cols=33 Identities=3% Similarity=0.095 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRNANLQAKANM 112 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~ 112 (294)
...+..+++..+.++..+-..+.+++.++...+
T Consensus 343 l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l 375 (553)
T PRK10869 343 LETLALAVEKHHQQALETAQKLHQSRQRYAKEL 375 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444433333
No 243
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=20.32 E-value=7.9e+02 Score=23.79 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 022606 12 KKEWDEAYAK 21 (294)
Q Consensus 12 ~~~~~~l~~~ 21 (294)
++||+++..+
T Consensus 3 ~eEW~eL~~e 12 (330)
T PF07851_consen 3 EEEWEELQKE 12 (330)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 244
>PF15125 TMEM238: TMEM238 protein family
Probab=20.30 E-value=1.5e+02 Score=21.86 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 022606 210 DIIDRVILVLGLILFSCAVLYVVSK 234 (294)
Q Consensus 210 ~~~Dk~il~~~~~~fl~~i~~Ii~r 234 (294)
..-|-.+..+++.+|+..+.||+|.
T Consensus 30 ~f~D~lvY~GaliiflSL~~Wv~WY 54 (65)
T PF15125_consen 30 DFYDFLVYTGALIIFLSLLWWVFWY 54 (65)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6678888888888888888887764
No 245
>PRK14162 heat shock protein GrpE; Provisional
Probab=20.26 E-value=4.3e+02 Score=23.52 Aligned_cols=25 Identities=4% Similarity=0.033 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 83 AQSLLQSWKKECNNLRLSLRNANLQ 107 (294)
Q Consensus 83 ~~~rV~~~k~dL~~Lr~~~rkA~l~ 107 (294)
+...++.++..+.+++++|.+++-+
T Consensus 51 l~~e~~elkd~~lR~~AEfeN~rkR 75 (194)
T PRK14162 51 LKAKNKDLEDKYLRSQAEIQNMQNR 75 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667777777777775533
No 246
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=20.21 E-value=1.4e+02 Score=24.91 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022606 215 VILVLGLILFSCAVLYVV 232 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~Ii 232 (294)
|++.+.++++++.++|..
T Consensus 24 wll~~lll~~~~~~~~~~ 41 (146)
T PF14316_consen 24 WLLLALLLLLLILLLWRL 41 (146)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444344333333333
No 247
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=20.16 E-value=3.1e+02 Score=28.49 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 54 QDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 54 ~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
.++++.+++.-++|..- .++++|.++..-+..--+.|++||...+..+
T Consensus 18 ~Egve~Fd~i~ek~~~~----~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ 65 (575)
T KOG2150|consen 18 DEGVEIFDEIYEKLHSA----NNVSQKEKLESDLKKEIKKLQRLRDQIKTWQ 65 (575)
T ss_pred hhhHHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444322 2477788888888777777888888887665
No 248
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=20.08 E-value=5.3e+02 Score=25.08 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhH
Q 022606 2 DEVVEAVEKAKKEWDEAYAKTQAHIKAIENYG-KSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQV 80 (294)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~-~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r 80 (294)
.+-+++|..|+.|.+.+...+.+.=...-.|- .-.. .-...-.+..-+..-...++.+...|++|+-+++-+. ..|
T Consensus 239 ~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~-aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq--~er 315 (391)
T KOG1850|consen 239 AKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWEN-ANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQ--TER 315 (391)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--hcc
Confidence 35578999999988766554444433333331 1111 0011111122222222456677777777777777653 235
Q ss_pred HHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECN 95 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~ 95 (294)
+.+-.+|+.++.+..
T Consensus 316 nel~~~~~~~e~~v~ 330 (391)
T KOG1850|consen 316 NELNKKLEDLEAQVS 330 (391)
T ss_pred ccHHHHHHHHhcccc
Confidence 566666666655544
No 249
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=20.03 E-value=3.8e+02 Score=20.02 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=32.2
Q ss_pred HHHHHHHHhhHHHHHH-hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022606 182 LRKAESEYKGHRSLLM-RTRNLLSTMQRQDIIDRVILVLGLILFSCAVLYVVS 233 (294)
Q Consensus 182 L~~t~~~~~~~~~~L~-~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~Ii~ 233 (294)
.....+++..++..+- ....+-.++.|+.=.|--|+|+.++=++++++|++.
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l 66 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVL 66 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554443 233456677788888999999887666666655544
Done!