Query 022606
Match_columns 294
No_of_seqs 180 out of 378
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:12:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qyw_A Vesicle transport throu 99.5 9E-14 3.1E-18 110.1 12.0 91 3-102 12-102 (102)
2 1vcs_A Vesicle transport throu 99.4 2E-13 6.9E-18 108.1 6.4 93 4-106 3-95 (102)
3 3onj_A T-snare VTI1; helix, HA 99.4 2.9E-12 9.8E-17 100.5 10.0 91 6-105 1-93 (97)
4 2nps_C Vesicle transport throu 99.1 2E-10 6.8E-15 87.1 8.9 78 133-214 4-81 (81)
5 1gl2_C VTI1B, vesicle transpor 98.7 4.8E-08 1.6E-12 70.9 8.0 60 149-208 6-65 (65)
6 1n7s_C SNAP-25A; neuronal snar 98.2 9.7E-06 3.3E-10 60.9 9.5 61 148-208 19-79 (79)
7 1nhl_A Synaptosomal-associated 97.6 0.00015 5.1E-09 50.4 6.7 52 155-206 3-54 (54)
8 3b5n_C Protein transport prote 96.0 0.05 1.7E-06 39.6 9.0 58 151-208 11-68 (70)
9 1l4a_C S-SNAP25 fusion protein 95.7 0.014 4.9E-07 43.9 4.9 59 149-207 24-82 (83)
10 3hd7_B Syntaxin-1A; membrane p 94.2 1.5 5.2E-05 34.1 13.7 73 151-223 20-95 (109)
11 3hd7_A Vesicle-associated memb 94.2 1.3 4.3E-05 33.5 12.3 55 150-211 10-68 (91)
12 2v71_A Nuclear distribution pr 84.5 18 0.00063 30.9 17.9 147 15-186 15-163 (189)
13 2kog_A Vesicle-associated memb 79.5 0.4 1.4E-05 38.3 0.2 43 148-191 36-82 (119)
14 3hd7_A Vesicle-associated memb 79.2 18 0.0006 27.1 10.2 83 151-233 4-86 (91)
15 3ghg_A Fibrinogen alpha chain; 75.4 7.9 0.00027 38.1 7.9 98 4-103 51-156 (562)
16 2kog_A Vesicle-associated memb 70.4 1.5 5.1E-05 34.9 1.3 81 151-231 32-112 (119)
17 2iub_A CORA, divalent cation t 66.8 78 0.0027 29.0 17.9 52 48-103 188-239 (363)
18 2fxo_A Myosin heavy chain, car 66.1 47 0.0016 26.2 10.4 16 14-29 42-57 (129)
19 2dnx_A Syntaxin-12; snare, HAB 66.1 47 0.0016 26.2 15.2 64 41-105 48-111 (130)
20 3ghg_A Fibrinogen alpha chain; 61.6 45 0.0015 32.9 9.9 21 83-103 122-142 (562)
21 4aj5_A SKA1, spindle and kinet 60.2 23 0.00078 26.7 6.0 55 14-73 5-62 (91)
22 2xhe_B Syntaxin1; exocytosis, 58.4 97 0.0033 27.3 15.8 66 42-107 86-160 (279)
23 4ev6_A Magnesium transport pro 57.1 1.1E+02 0.0038 27.6 19.3 53 47-103 163-215 (339)
24 1deq_A Fibrinogen (alpha chain 55.2 1.2E+02 0.0041 28.5 11.4 29 4-32 54-82 (390)
25 1dn1_B Syntaxin 1A, syntaxin b 54.7 1.1E+02 0.0038 26.9 15.4 69 42-110 71-143 (267)
26 3uun_A Dystrophin; triple heli 54.5 61 0.0021 23.7 12.0 94 8-101 4-101 (119)
27 1hs7_A Syntaxin VAM3; UP-and-D 50.4 63 0.0022 24.5 7.3 25 13-37 6-31 (97)
28 4b6x_A AVRRPS4, avirulence pro 50.3 73 0.0025 23.4 7.9 58 45-103 23-80 (90)
29 3kyj_A CHEA3, putative histidi 49.8 97 0.0033 24.7 10.2 32 1-32 6-37 (144)
30 2c5k_T Syntaxin TLG1, T-snare 49.8 79 0.0027 23.7 9.3 82 15-102 8-92 (95)
31 1s94_A S-syntaxin; three helix 46.3 1.2E+02 0.0041 24.7 12.2 32 42-73 79-110 (180)
32 1fio_A SSO1 protein; four heli 45.9 1.2E+02 0.0042 24.7 16.9 105 1-112 1-111 (196)
33 3us6_A Histidine-containing ph 43.2 1.3E+02 0.0044 24.2 9.7 45 56-104 89-133 (153)
34 1m1j_C Fibrinogen gamma chain; 43.0 74 0.0025 30.2 8.1 28 5-32 40-67 (409)
35 4dnd_A Syntaxin-10, SYN10; str 42.6 1.2E+02 0.0043 23.9 9.0 57 48-104 31-93 (130)
36 1deq_A Fibrinogen (alpha chain 39.7 1.6E+02 0.0053 27.8 9.5 28 81-108 137-164 (390)
37 1gl2_D Syntaxin 8, vesicle tra 39.3 89 0.0031 21.3 7.4 46 161-206 18-63 (65)
38 3vkg_A Dynein heavy chain, cyt 38.9 6E+02 0.02 30.7 27.0 58 151-208 2027-2084(3245)
39 2dnx_A Syntaxin-12; snare, HAB 37.8 54 0.0018 25.8 5.4 55 44-98 10-64 (130)
40 3uul_A Utrophin; spectrin repe 37.2 1.2E+02 0.0041 22.1 13.5 94 9-102 5-102 (118)
41 3tul_A Cell invasion protein S 36.2 1.8E+02 0.006 23.8 10.4 31 78-108 100-130 (158)
42 1wfd_A Hypothetical protein 15 35.5 1.3E+02 0.0045 22.1 7.3 51 53-103 31-81 (93)
43 1tqg_A Chemotaxis protein CHEA 34.5 1.3E+02 0.0046 21.9 12.2 70 2-71 1-71 (105)
44 4a5x_A MITD1, MIT domain-conta 32.9 1.4E+02 0.0048 21.7 7.3 51 53-103 32-82 (86)
45 1t3j_A Mitofusin 1; coiled coi 32.5 1.6E+02 0.0055 22.2 7.2 20 82-101 75-94 (96)
46 2dfs_A Myosin-5A; myosin-V, in 32.0 3.9E+02 0.013 28.4 12.3 116 3-123 946-1068(1080)
47 1jcd_A Major outer membrane li 31.6 1.2E+02 0.004 20.4 6.4 29 80-108 13-41 (52)
48 2v6x_A Vacuolar protein sortin 30.2 1.5E+02 0.0051 21.1 6.8 50 54-103 30-79 (85)
49 2c5k_T Syntaxin TLG1, T-snare 28.8 1.8E+02 0.0062 21.6 7.4 52 48-103 10-61 (95)
50 3j00_Z Cell division protein F 28.6 1.4E+02 0.0049 22.4 6.2 15 218-232 4-18 (98)
51 1xaw_A Occludin; coiled-coil, 28.5 2.3E+02 0.0079 22.8 8.0 22 82-103 113-134 (140)
52 3mq9_A Bone marrow stromal ant 28.5 3.6E+02 0.012 25.0 12.4 58 48-105 397-463 (471)
53 3lay_A Zinc resistance-associa 28.0 2.6E+02 0.0089 23.2 10.0 38 65-102 99-137 (175)
54 1k04_A FADK 1, focal adhesion 27.3 2.6E+02 0.009 23.1 8.7 83 16-105 32-115 (162)
55 2w2u_A Hypothetical P60 katani 27.2 85 0.0029 22.8 4.5 48 52-99 34-81 (83)
56 3tnu_B Keratin, type II cytosk 26.5 2.2E+02 0.0077 22.0 9.8 23 83-105 73-95 (129)
57 3gm3_A Protein tyrosine kinase 26.1 2.7E+02 0.0092 22.8 10.7 83 16-105 22-105 (153)
58 2nps_D Syntaxin-6; vesicle fus 25.8 1.8E+02 0.0063 20.7 8.7 47 165-211 32-78 (82)
59 2lch_A Protein OR38; structura 25.7 2.1E+02 0.007 21.3 10.6 69 1-69 1-70 (113)
60 3lay_A Zinc resistance-associa 25.6 2.7E+02 0.0094 23.0 8.0 66 3-71 75-140 (175)
61 1m1j_B Fibrinogen beta chain; 24.9 4.7E+02 0.016 25.1 11.9 28 5-32 88-115 (464)
62 2yfa_A MCPS, methyl-accepting 23.9 3.1E+02 0.011 22.7 15.7 48 58-105 117-165 (258)
63 1m1j_B Fibrinogen beta chain; 23.9 4.9E+02 0.017 25.0 10.8 14 85-98 175-188 (464)
64 3k8w_A Flagellin homolog; flag 23.6 4.3E+02 0.015 24.2 10.3 42 56-97 61-106 (326)
65 3tnu_A Keratin, type I cytoske 23.3 2.6E+02 0.009 21.7 9.9 22 84-105 76-97 (131)
66 1ez3_A Syntaxin-1A; three heli 23.3 2.4E+02 0.0082 21.2 13.3 64 42-105 48-115 (127)
67 1sfc_D Protein (SNAP-25B), pro 23.0 2.2E+02 0.0075 20.6 7.8 57 152-208 29-85 (87)
68 2l6f_A Focal adhesion kinase 1 28.6 18 0.0006 31.5 0.0 89 11-106 4-93 (215)
69 2lat_A Dolichyl-diphosphooligo 22.4 78 0.0027 19.8 2.9 15 216-230 11-25 (37)
70 1yvi_A Histidine-containing ph 22.4 2.8E+02 0.0097 21.7 10.2 45 56-104 90-134 (149)
71 4dnd_A Syntaxin-10, SYN10; str 22.2 2.9E+02 0.0099 21.7 12.2 30 43-72 62-91 (130)
72 3v47_C Flagellin; innate immun 21.8 2.8E+02 0.0096 26.4 8.1 42 56-97 40-85 (425)
73 1r8i_A TRAC; VIRB5, helical bu 21.3 1.6E+02 0.0054 24.9 5.8 59 44-106 120-178 (213)
74 2p4v_A Transcription elongatio 21.1 3.3E+02 0.011 21.9 8.6 63 6-70 9-75 (158)
75 2v6y_A AAA family ATPase, P60 21.0 1.5E+02 0.005 21.3 4.8 46 55-100 29-74 (83)
76 3nmd_A CGMP dependent protein 20.5 2.4E+02 0.0082 20.1 6.1 46 45-103 20-65 (72)
77 1rkl_A Dolichyl-diphosphooligo 20.4 92 0.0031 19.4 2.9 16 215-230 10-25 (36)
No 1
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=99.53 E-value=9e-14 Score=110.08 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHH
Q 022606 3 EVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQS 82 (294)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~ 82 (294)
+|+++|++||.+|+.++.+++++|.+|..+.. ++ +++..+.+++. .|+++..+|++|+++++.+| ++.|..
T Consensus 12 ~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~-~e---~rk~~i~~ie~----~ldEA~eLl~qMelE~r~~p-~s~R~~ 82 (102)
T 2qyw_A 12 ASSEHFEKLHEIFRGLLEDLQGVPERLLGTAG-TE---EKKKLVRDFDE----KQQEANETLAEMEEELRYAP-LTFRNP 82 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-SH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHTSC-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-cH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC-HHHHHH
Confidence 58999999999999999999999999987632 22 45555555555 79999999999999999987 888999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022606 83 AQSLLQSWKKECNNLRLSLR 102 (294)
Q Consensus 83 ~~~rV~~~k~dL~~Lr~~~r 102 (294)
+..||+.||.+|.+|+.+|+
T Consensus 83 ~~~klr~Yk~dL~~lk~elk 102 (102)
T 2qyw_A 83 MMSKLRNYRKDLAKLHREVR 102 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999998874
No 2
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=99.41 E-value=2e-13 Score=108.06 Aligned_cols=93 Identities=13% Similarity=0.216 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHH
Q 022606 4 VVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSA 83 (294)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~ 83 (294)
++++|++||.+|+.++.+++.+|..|..++ |+ +++..+.+++. .|+++..+|++|+++++.+| ++.|..+
T Consensus 3 sSelFe~YE~df~~l~~~i~~kl~~i~~~~--ge---erk~~i~~ie~----~l~EA~ell~qMelE~r~~p-~~~R~~~ 72 (102)
T 1vcs_A 3 SGSSGEGYEQDFAVLTAEITSKIARVPRLP--PD---EKKQMVANVEK----QLEEARELLEQMDLEVREIP-PQSRGMY 72 (102)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHHHHGGGSC--TT---THHHHHHHHHH----HHHHHHHHHHHHHHHHTTSC-TTTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccC--cH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC-HHhHHHH
Confidence 457899999999999999999999998875 22 45555555555 79999999999999999987 7779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022606 84 QSLLQSWKKECNNLRLSLRNANL 106 (294)
Q Consensus 84 ~~rV~~~k~dL~~Lr~~~rkA~l 106 (294)
..+|+.||.+|.+|+.+|+++..
T Consensus 73 ~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 73 SNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999664
No 3
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=99.37 E-value=2.9e-12 Score=100.50 Aligned_cols=91 Identities=11% Similarity=0.196 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ChHhHHHHH
Q 022606 6 EAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLP-TSDQVQSAQ 84 (294)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~-~~~~r~~~~ 84 (294)
++|++||.+|+.++.+++.+|..+++++ |. +++..+.+++. .++++..+|++|+++++.+. |++.|..+.
T Consensus 1 ~lF~~YE~df~~~~~~i~~~l~~~~~~~--ge---~Rk~~i~~ie~----~ldEA~ell~qMelE~~~~~~p~~~R~~~~ 71 (97)
T 3onj_A 1 SLLISYESDFKTTLEQAKASLAEAPSQP--LS---QRNTTLKHVEQ----QQDELFDLLDQMDVEVNNSIGDASERATYK 71 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGGSC--HH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccC--hH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4799999999999999999999998765 33 45555555555 79999999999999999982 478899999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHH
Q 022606 85 SLLQSWKKECNN-LRLSLRNAN 105 (294)
Q Consensus 85 ~rV~~~k~dL~~-Lr~~~rkA~ 105 (294)
.+|+.||.+|.+ ++..|+++.
T Consensus 72 ~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 72 AKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 999999853
No 4
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.13 E-value=2e-10 Score=87.11 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=67.3
Q ss_pred hhhhhcchhhhhhhhHHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhh
Q 022606 133 RRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDII 212 (294)
Q Consensus 133 r~r~~~~~~~l~~~s~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~ 212 (294)
|++.+..++.+- ..+++|.++++++.++.+.|..++++|..|+++|.+++++++++++.++.|+++|+.|.||..+
T Consensus 4 R~~Ll~~t~~L~----rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~ 79 (81)
T 2nps_C 4 RAHLLDNTERLE----RSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQ 79 (81)
T ss_dssp TTHHHHHHHHHH----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence 334444445553 3488999999999999999999999999999999999999999999999999999999999988
Q ss_pred hH
Q 022606 213 DR 214 (294)
Q Consensus 213 Dk 214 (294)
+|
T Consensus 80 nK 81 (81)
T 2nps_C 80 NR 81 (81)
T ss_dssp --
T ss_pred CC
Confidence 76
No 5
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=98.71 E-value=4.8e-08 Score=70.92 Aligned_cols=60 Identities=18% Similarity=0.333 Sum_probs=55.2
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 022606 149 SITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQR 208 (294)
Q Consensus 149 ~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~R 208 (294)
..+++|.++.+++.++.+.|..++++|..|+++|.++++++.++++.|+.|+++|+.|.|
T Consensus 6 ~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 6 RATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 348999999999999999999999999999999999999999999999999999999875
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=98.20 E-value=9.7e-06 Score=60.90 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=57.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 022606 148 ESITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQR 208 (294)
Q Consensus 148 ~~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~R 208 (294)
..-+++++++.+++.++.+.|..++.+|..|++.|.+++..+.++++.|..|.++|+.|.+
T Consensus 19 ~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 19 DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 3458999999999999999999999999999999999999999999999999999999974
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=97.63 E-value=0.00015 Score=50.40 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHH
Q 022606 155 RRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTM 206 (294)
Q Consensus 155 ~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i 206 (294)
+++.+++.+..+.|..++.+|.+|++.|.++++.+.++++.+..|.++|+.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 5778889999999999999999999999999999999999999999999754
No 8
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=96.03 E-value=0.05 Score=39.61 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 022606 151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQR 208 (294)
Q Consensus 151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~R 208 (294)
.++-+++-+++.+..+.|..++..|..|++.|.+++..+..++..+..+-+.++.|..
T Consensus 11 l~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 11 VASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555777888889999999999999999999999999999999999999999998864
No 9
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=95.66 E-value=0.014 Score=43.92 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=52.2
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 022606 149 SITESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQ 207 (294)
Q Consensus 149 ~~T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~ 207 (294)
.-+++-+|+.+++.+..+.|..++..|..|.+.|.+++..+..++..+..+-+.|+.|+
T Consensus 24 esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 24 DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34677788888999999999999999999999999999999999999999988887765
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=94.23 E-value=1.5 Score=34.13 Aligned_cols=73 Identities=5% Similarity=0.098 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHH---HHHhhhhhHHHHHHHHHH
Q 022606 151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLST---MQRQDIIDRVILVLGLIL 223 (294)
Q Consensus 151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~---i~RR~~~Dk~il~~~~~~ 223 (294)
.+.+++..+.|.+.-+.-........+|.+.+.....-.......+..+.+=+.+ +.|+...-+||+++++++
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i 95 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVI 95 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHH
Confidence 4445555555555555555666667889999999999999988888888877744 455555555555444333
No 11
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=94.18 E-value=1.3 Score=33.52 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHHHH----HHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhh
Q 022606 150 ITESLRRTRQLMVQEV----ERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDI 211 (294)
Q Consensus 150 ~T~~L~rt~~~m~~~l----e~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~ 211 (294)
+...+..+...|.+.+ ++| .-|+.|.+.++.|......|.. .|+++=+.|-.+..
T Consensus 10 vq~ev~evk~iM~~NI~kvL~Rg-ekL~~L~~kt~~L~~~s~~F~~------~A~~l~rkmwwkn~ 68 (91)
T 3hd7_A 10 TQAQVDEVVDIMRVNVDKVLERD-QKLSELDDRADALQAGASQFET------SAAKLKRKYWWKNL 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 4555666666664444 455 5678888888888877766654 34445455555555
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.46 E-value=18 Score=30.86 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHh-hCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHH
Q 022606 15 WDEAYAKTQAHIKAIEN-YGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKE 93 (294)
Q Consensus 15 ~~~l~~~~~~~i~~l~~-~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~d 93 (294)
|.+.+.+.+..+..++. |. +...+..+|+......|..+...+.++..-+.. +...++.||..
T Consensus 15 wk~~~~~~~q~~~~le~El~-------EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~---------L~~E~e~~k~K 78 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELV-------EFQEGSRELEAELEAQLVQAEQRNRDLQADNQR---------LKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 55555555555555554 33 334566678887777777777766665533322 22333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhh-hhcchhhhhhhhHHHhHHHHHHHHHHHHHHHHhHHHH
Q 022606 94 CNNLRLSLRNANLQAKANMRKAAQEERELLLGGGEESTIRRR-NLQTKAGMTSAAESITESLRRTRQLMVQEVERNASTL 172 (294)
Q Consensus 94 L~~Lr~~~rkA~l~ak~~~~~~~~~eReeLL~~~~~~~~r~r-~~~~~~~l~~~s~~~T~~L~rt~~~m~~~le~g~~~L 172 (294)
+...+..+-+....-.+.+... +..++.|- .+-| .-..+|.+-.+....+.+|......+...+++.+..-
T Consensus 79 ~~~~~~e~~~~~~~Lq~el~~l-~~~~~~l~-------~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE 150 (189)
T 2v71_A 79 LEHQYAQSYKQVSVLEDDLSQT-RAIKEQLH-------KYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333222221111111110 01111110 0001 1133455555555667888888888888999988888
Q ss_pred HhHHhhhHHHHHHH
Q 022606 173 MTFDESTGVLRKAE 186 (294)
Q Consensus 173 ~~L~~q~~tL~~t~ 186 (294)
..|.+ ...|.-..
T Consensus 151 ~El~E-Ke~l~~~~ 163 (189)
T 2v71_A 151 SELDE-KESLLVSV 163 (189)
T ss_dssp HHHHH-HHHHHCCC
T ss_pred HHHHH-HHHHHHHH
Confidence 88876 55554333
No 13
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=79.54 E-value=0.4 Score=38.26 Aligned_cols=43 Identities=16% Similarity=0.368 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHHHHHHHH----HhHHHHHhHHhhhHHHHHHHHHHhh
Q 022606 148 ESITESLRRTRQLMVQEVE----RNASTLMTFDESTGVLRKAESEYKG 191 (294)
Q Consensus 148 ~~~T~~L~rt~~~m~~~le----~g~~~L~~L~~q~~tL~~t~~~~~~ 191 (294)
..+...+..+...|.+.++ || .-|++|.+.++.|......|..
T Consensus 36 ~~vq~evdeVk~IM~~NIdkvLeRG-EkLd~L~~KTe~L~~~S~~F~k 82 (119)
T 2kog_A 36 QQTQAQVDEVVDIMRVNVDKVLERD-QKLSELDDRADALQAGASQFET 82 (119)
T ss_dssp HHSSHHHHHHHHHHHHHHHHHHCCC-CSSCCCCSCCSCCCSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777755555 55 4577788888777766665554
No 14
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=79.17 E-value=18 Score=27.05 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022606 151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLY 230 (294)
Q Consensus 151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~ 230 (294)
.+.|.+.++.+++.-..-..+.+.+-+..+.|....++=.++.+.=..=++--+.+.|+.+--.+=+++.+++.+++++|
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999988887666666555555566667777666665555555555555555
Q ss_pred HHH
Q 022606 231 VVS 233 (294)
Q Consensus 231 Ii~ 233 (294)
|++
T Consensus 84 ii~ 86 (91)
T 3hd7_A 84 III 86 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.44 E-value=7.9 Score=38.09 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhh-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 022606 4 VVEAVEKAKKEWDEAYAKTQAHIKAIENYG-KSREEKE-------KSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLP 75 (294)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~-~~~~~~~-------~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~ 75 (294)
|-...++.|+.+...++++++.+..++.-. ....... .+.......++.+.+--.+|++.|..|+..+..+-
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666554311 1000000 01111112222222222266666666666665532
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 76 TSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 76 ~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
...+.|+..|+..+.++++|..++.-
T Consensus 131 --snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 --QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666677777777766666543
No 16
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=70.35 E-value=1.5 Score=34.88 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022606 151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDIIDRVILVLGLILFSCAVLY 230 (294)
Q Consensus 151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~~Dk~il~~~~~~fl~~i~~ 230 (294)
.+.|.+.+..+++....-..+.+.+-+-.+.|..+.++=.++...-..=++--+.+.|+.+-..+-+++.+++++++++|
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii~ 111 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 111 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999998888888888888877766655443322222222222344455444444333333333333333
Q ss_pred H
Q 022606 231 V 231 (294)
Q Consensus 231 I 231 (294)
|
T Consensus 112 i 112 (119)
T 2kog_A 112 I 112 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=66.83 E-value=78 Score=28.98 Aligned_cols=52 Identities=13% Similarity=-0.002 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 48 RLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 48 ~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
.+-...-.-++.+...+++++..+.+-+. .....++-.++.++-.++..+.-
T Consensus 188 ~ivd~y~~~l~~l~~~id~lE~~v~~~~~----~~~l~~l~~lrr~l~~lrr~l~p 239 (363)
T 2iub_A 188 ALVDDYFVLLEKIDDEIDVLEEEVLERPE----KETVQRTHQLKRNLVELRKTIWP 239 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445677888888888888776432 23456777778888777666554
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=66.08 E-value=47 Score=26.17 Aligned_cols=16 Identities=0% Similarity=-0.105 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022606 14 EWDEAYAKTQAHIKAI 29 (294)
Q Consensus 14 ~~~~l~~~~~~~i~~l 29 (294)
.+..+.++.+....++
T Consensus 42 ~~~~l~~Ek~~L~~qL 57 (129)
T 2fxo_A 42 KMVSLLQEKNDLQLQV 57 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 19
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.08 E-value=47 Score=26.19 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=42.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 41 KSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 41 ~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
+-+..+..+...+.+.+......+.+|..+.+... +.....-+...+.+..|+...-.+|.+++
T Consensus 48 ~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~-~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Q 111 (130)
T 2dnx_A 48 KLQENLQQLQHSTNQLAKETNELLKELGSLPLPLS-TSEQRQQRLQKERLMNDFSAALNNFQAVQ 111 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778888888888888889999999988765432 32222233445566666666666666655
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.55 E-value=45 Score=32.85 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022606 83 AQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 83 ~~~rV~~~k~dL~~Lr~~~rk 103 (294)
++.+|+.....++.||..++.
T Consensus 122 LKekVdnQlsnIrvLQsnLed 142 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344433333
No 21
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=60.22 E-value=23 Score=26.68 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhh---CcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022606 14 EWDEAYAKTQAHIKAIENY---GKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQ 73 (294)
Q Consensus 14 ~~~~l~~~~~~~i~~l~~~---~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~ 73 (294)
+.+.+|.-++.+|+.|... ...|+ .|..+..+..+-. .+-.+++++++|+..+..
T Consensus 5 ~LEdlc~hineKIs~ikk~L~Lr~~gq-dP~lk~~L~Kig~----Ei~~l~eLLn~~E~eV~~ 62 (91)
T 4aj5_A 5 DLEQLCSHVNEKIGNIKKTLSLRNCGQ-EPTLKTVLNKIGD----EIIVINELLNKLELEIQY 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccc-ChhHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4678899999999998773 23333 2233444444444 588899999999998876
No 22
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=58.36 E-value=97 Score=27.25 Aligned_cols=66 Identities=11% Similarity=0.011 Sum_probs=48.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------ChH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 42 SSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLP--------TSD-QVQSAQSLLQSWKKECNNLRLSLRNANLQ 107 (294)
Q Consensus 42 ~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~--------~~~-~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ 107 (294)
....+..+...|...+..++..|..|+..+...+ ++. .....+.-+..+..++..+-..|++++..
T Consensus 86 ~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~ 160 (279)
T 2xhe_B 86 LNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAE 160 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999999988765431 111 22344566778888888888888887654
No 23
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=57.06 E-value=1.1e+02 Score=27.56 Aligned_cols=53 Identities=11% Similarity=-0.083 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 47 QRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 47 ~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
..+-.....-+..+.+.+++++..+..-+. .....++-.++.++..++..+..
T Consensus 163 d~ivd~~~~~l~~l~~~i~~lE~~l~~~~~----~~~l~~l~~lrr~l~~lrr~l~~ 215 (339)
T 4ev6_A 163 NEITRSYSRILMNLEDELEELEDKLLAGYD----REVMEKILGLRKTLVYFHKSLIA 215 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCCC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hhHHHHHHHHHHHHHHHHHHhhh
Confidence 334444445677788888888877765432 34456667777777766655543
No 24
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.21 E-value=1.2e+02 Score=28.55 Aligned_cols=29 Identities=3% Similarity=0.168 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022606 4 VVEAVEKAKKEWDEAYAKTQAHIKAIENY 32 (294)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~i~~l~~~ 32 (294)
|-...++.++.+..-+.++++.+..+...
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 45567788888888888888888777653
No 25
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=54.72 E-value=1.1e+02 Score=26.86 Aligned_cols=69 Identities=9% Similarity=0.058 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 42 SSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQ----LPTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKA 110 (294)
Q Consensus 42 ~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~----~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~ 110 (294)
-+..+..+...|......++..|..|+..+.. .+++.+-..-+.-+..+...+..+-..|++++...+.
T Consensus 71 ~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e 143 (267)
T 1dn1_B 71 TKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRE 143 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778877888888888888765432 1222222233556667777777777777777654433
No 26
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=54.47 E-value=61 Score=23.74 Aligned_cols=94 Identities=7% Similarity=0.016 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcchh---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCChHhHHHH
Q 022606 8 VEKAKKEWDEAYAKTQAHIKAIENYGKSRE---EKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAP-QLPTSDQVQSA 83 (294)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~---~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~-~~~~~~~r~~~ 83 (294)
+.+|...+.++..=+...=..+.+...+|. ..+.-......+..+|...=..+....+.=+.+.. ..+.+.....+
T Consensus 4 L~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i 83 (119)
T 3uun_A 4 LDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEV 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 456777777777666655555544332222 12122233334444433333333333333333322 22345556777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022606 84 QSLLQSWKKECNNLRLSL 101 (294)
Q Consensus 84 ~~rV~~~k~dL~~Lr~~~ 101 (294)
..+++.++..+..|....
T Consensus 84 ~~~l~~l~~rw~~L~~~~ 101 (119)
T 3uun_A 84 QEQMNLLNSRWECLRVAS 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888777777776555
No 27
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=50.43 E-value=63 Score=24.49 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh-Ccchh
Q 022606 13 KEWDEAYAKTQAHIKAIENY-GKSRE 37 (294)
Q Consensus 13 ~~~~~l~~~~~~~i~~l~~~-~~~~~ 37 (294)
.++..+++.+...|..++.. ..+|.
T Consensus 6 ~d~~~li~t~s~niq~l~k~~~qlGT 31 (97)
T 1hs7_A 6 KELSNLIETFAEQSRVLEKECTKIGS 31 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56677888888888777763 44443
No 28
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=50.26 E-value=73 Score=23.44 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 45 SLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 45 ~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
..++|..+|+++-..++.+-++|..-..+ .+|..-..-...+++-+.||..|...|--
T Consensus 23 ~~~~lrq~I~DKQ~~i~~Lt~eLq~A~~e-aNpaeIA~~~~~L~qAraDL~~l~r~~av 80 (90)
T 4b6x_A 23 AGAALRQEIEDKQLMVNNLTDELQDAIDE-ANPAEIANTSQQLRHARADLADLQRRFAV 80 (90)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888988888888888888754444 55776666777788888888888776644
No 29
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=49.79 E-value=97 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022606 1 MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENY 32 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~ 32 (294)
|++|.++.+-|-.|-.+....+...+..++.-
T Consensus 6 m~~~~ell~~FleEa~E~L~~le~~Ll~le~~ 37 (144)
T 3kyj_A 6 FDEMDEIWALYADDGAQALDAMEASLLALQAG 37 (144)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78889999999999999999999999988863
No 30
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=49.79 E-value=79 Score=23.68 Aligned_cols=82 Identities=12% Similarity=0.274 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhh-Cc--chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHH
Q 022606 15 WDEAYAKTQAHIKAIENY-GK--SREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWK 91 (294)
Q Consensus 15 ~~~l~~~~~~~i~~l~~~-~~--~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k 91 (294)
|.....+++..+..++.+ .+ .+. .+.-...+...-..+++.|..|...|.=++.- ++.+-..=+..|..++
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~~~~~~-~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-----~~~EI~~Rk~~v~~l~ 81 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITRHNTAG-DDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-----ENEDVSGREAQVKNIK 81 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCC---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----TTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHH
Confidence 344455555555555553 10 010 01222333333344444455455444443322 2322333356777888
Q ss_pred HHHHHHHHHHH
Q 022606 92 KECNNLRLSLR 102 (294)
Q Consensus 92 ~dL~~Lr~~~r 102 (294)
.++..++..+.
T Consensus 82 ~~i~~lk~~~~ 92 (95)
T 2c5k_T 82 QQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888877763
No 31
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=46.35 E-value=1.2e+02 Score=24.75 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022606 42 SSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQ 73 (294)
Q Consensus 42 ~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~ 73 (294)
-+..+..+...|......++..|+.|+....+
T Consensus 79 ~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~ 110 (180)
T 1s94_A 79 MKEELEELMTDIKRTANKVRGKLKTIELNIEQ 110 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677778888888888888888888866543
No 32
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=45.87 E-value=1.2e+02 Score=24.75 Aligned_cols=105 Identities=14% Similarity=0.092 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-C---cchhhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 022606 1 MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENY-G---KSREEK--EKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQL 74 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~-~---~~~~~~--~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~ 74 (294)
||++.+.|+.++ +-..-...++..+..|..+ . ...... ......+..+...|......++..|..|+.....
T Consensus 1 ~~~~~~f~~~~~-~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~- 78 (196)
T 1fio_A 1 MHDFVGFMNKIS-QINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIH- 78 (196)
T ss_dssp CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred CCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-
Confidence 677777665554 3444455556666666553 1 111111 1346777888888888999999999999876542
Q ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 75 PTSDQVQSAQSLLQSWKKECNNLRLSLRNANLQAKANM 112 (294)
Q Consensus 75 ~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~ak~~~ 112 (294)
. | .-+.-+..+..++..+-..|++++...+...
T Consensus 79 -~---r-~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~ 111 (196)
T 1fio_A 79 -D---T-NKQAQAENSRQRFLKLIQDYRIVDSNYKEEN 111 (196)
T ss_dssp -C---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -h---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 2234566778888888888888775543333
No 33
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=43.22 E-value=1.3e+02 Score=24.19 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 56 GLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNA 104 (294)
Q Consensus 56 ~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA 104 (294)
+...+...|.+++..++.-. ...+...+.+++.++..++..++..
T Consensus 89 Ga~~l~~~c~~lE~~~~~~~----~~~~~~~l~~l~~e~~~v~~~L~~~ 133 (153)
T 3us6_A 89 GAQRVKNSCVAFRNFCEEQN----IDACRRCLQQVKQEYLLVKNKLETL 133 (153)
T ss_dssp TCHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999888743 3456777888888888888888664
No 34
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.96 E-value=74 Score=30.25 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022606 5 VEAVEKAKKEWDEAYAKTQAHIKAIENY 32 (294)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~i~~l~~~ 32 (294)
...+|..-++...+...+..++..|..+
T Consensus 40 l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 40 LLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666677777777777777777775
No 35
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=42.60 E-value=1.2e+02 Score=23.89 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC------hHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 48 RLNGLAQDGLNLLNSLHLKLDLLAPQLPT------SDQVQSAQSLLQSWKKECNNLRLSLRNA 104 (294)
Q Consensus 48 ~L~~~I~~~l~~l~~~ie~ldl~a~~~~~------~~~r~~~~~rV~~~k~dL~~Lr~~~rkA 104 (294)
....+|+..|..++.++.+...+...-.. ...+.+++..+...+.+|..|..+.+-+
T Consensus 31 ~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~iv 93 (130)
T 4dnd_A 31 VVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIV 93 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888899999999888755544221 2235667777888888888777777653
No 36
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.66 E-value=1.6e+02 Score=27.82 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 81 QSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 81 ~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
..|+.-|+..+.++++|-.+++-..-.|
T Consensus 137 r~Lq~~l~~q~~kiqRLE~~Id~c~~~C 164 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLEVDIDIKIRSC 164 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555666666666666666665444333
No 37
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=39.31 E-value=89 Score=21.28 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=32.3
Q ss_pred HHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHH
Q 022606 161 MVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTM 206 (294)
Q Consensus 161 m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i 206 (294)
+...=..|..+-+.|..|...|..+.+.+....+.|..+.+=+..+
T Consensus 18 v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 18 ISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333345666777788888888888888888888887777665554
No 38
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.91 E-value=6e+02 Score=30.71 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 022606 151 TESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQR 208 (294)
Q Consensus 151 T~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~R 208 (294)
.+.|......+++-.+.-..--..+.+....-.....++......|.++.+||+.+.-
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555555544444333333444444555566677778888899999999988853
No 39
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.79 E-value=54 Score=25.84 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHH
Q 022606 44 NSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLR 98 (294)
Q Consensus 44 ~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr 98 (294)
.+...|...|...|-.++.++..|+-++..+..+.+-..+..++.........+-
T Consensus 10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~ 64 (130)
T 2dnx_A 10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLA 64 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Confidence 4455666666667777777777777776666555554555555555544444333
No 40
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=37.15 E-value=1.2e+02 Score=22.11 Aligned_cols=94 Identities=7% Similarity=0.011 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcchh---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCChHhHHHHH
Q 022606 9 EKAKKEWDEAYAKTQAHIKAIENYGKSRE---EKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQ-LPTSDQVQSAQ 84 (294)
Q Consensus 9 ~~~~~~~~~l~~~~~~~i~~l~~~~~~~~---~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~-~~~~~~r~~~~ 84 (294)
..|...++++..=+...=..+.+....|. ....-......+..+|...=..+....+.=+.+... .+++.....++
T Consensus 5 ~~f~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~ 84 (118)
T 3uul_A 5 DSYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQ 84 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 56677777776666655555554332222 111222333344444433333333333333333332 23455567788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022606 85 SLLQSWKKECNNLRLSLR 102 (294)
Q Consensus 85 ~rV~~~k~dL~~Lr~~~r 102 (294)
.+++.++..+..|.....
T Consensus 85 ~~l~~l~~rw~~L~~~~~ 102 (118)
T 3uul_A 85 EQMTLLNARWEALRVESM 102 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888877777765553
No 41
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=36.25 E-value=1.8e+02 Score=23.82 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 78 DQVQSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 78 ~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
++-.+++..+++++.|+.+++..+.+|.-.+
T Consensus 100 P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A~ 130 (158)
T 3tul_A 100 PGYAQAEAAVEQAGKEATEAKEALDKATDAT 130 (158)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999999999999999987543
No 42
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=35.49 E-value=1.3e+02 Score=22.10 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 53 AQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 53 I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
..+.+.....-|+-|-..++..+++..+..++.++.+|-.....|+..+.+
T Consensus 31 y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~ 81 (93)
T 1wfd_A 31 YQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQ 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344677777778887777777787888899999999999888888877654
No 43
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=34.49 E-value=1.3e+02 Score=21.89 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhc
Q 022606 2 DEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQ-DGLNLLNSLHLKLDLLA 71 (294)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~-~~l~~l~~~ie~ldl~a 71 (294)
|+|.++++.|-.|-.+....+...+..++.-.......+.-...+..|++... =++..+...+..++...
T Consensus 1 ~d~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l 71 (105)
T 1tqg_A 1 GSHMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 71 (105)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHH
Confidence 67899999999999999999999998888632111111122344444443221 24455666666666543
No 44
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=32.88 E-value=1.4e+02 Score=21.68 Aligned_cols=51 Identities=8% Similarity=-0.010 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 53 AQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 53 I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
..+.+.....-|+-|-..+...+++..|..++.++.+|-.....|+.-+.+
T Consensus 32 y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 32 YPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344677777777777777777787888889999999998888888776543
No 45
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.52 E-value=1.6e+02 Score=22.24 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022606 82 SAQSLLQSWKKECNNLRLSL 101 (294)
Q Consensus 82 ~~~~rV~~~k~dL~~Lr~~~ 101 (294)
.++.+...+..+|..+...|
T Consensus 75 ~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 75 LLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555554443
No 46
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.96 E-value=3.9e+02 Score=28.44 Aligned_cols=116 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHH
Q 022606 3 EVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQS 82 (294)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~ 82 (294)
+..+....++..+..-+.+++..+..++.....-. +....+..|+.++..-=..+..+..+.+.+ +......+..
T Consensus 946 ~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~---~~~~~v~~L~~e~~~l~~~~~~~~ke~~~l--ee~~~~~~~~ 1020 (1080)
T 2dfs_A 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK---NATNRVLSLQEEIAKLRKELHQTQTEKKTI--EEWADKYKHE 1020 (1080)
T ss_dssp -----CHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHHHhh
Q 022606 83 AQSLLQSWKKECNNLRLSLRNAN--LQAKAN-----MRKAAQEERELL 123 (294)
Q Consensus 83 ~~~rV~~~k~dL~~Lr~~~rkA~--l~ak~~-----~~~~~~~eReeL 123 (294)
+..+|..++++...|++...... ...... .......++..|
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 47
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.61 E-value=1.2e+02 Score=20.36 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 80 VQSAQSLLQSWKKECNNLRLSLRNANLQA 108 (294)
Q Consensus 80 r~~~~~rV~~~k~dL~~Lr~~~rkA~l~a 108 (294)
-+.+-.+|++++.+...++.+...|.-.+
T Consensus 13 V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888888888777665443
No 48
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=30.22 E-value=1.5e+02 Score=21.14 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 54 QDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 54 ~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
.+.+.....-|+-|-..++..+++..|..++.++.+|-.....|+.-+.+
T Consensus 30 ~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 30 EEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666677766666666677888899999999999988888876543
No 49
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=28.81 E-value=1.8e+02 Score=21.64 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 48 RLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 48 ~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
.+..+++..|..+..++..-. .-+++..+..+..-+..+..+|..|..+..-
T Consensus 10 ~V~~D~~~ql~~l~~~~~~~~----~~~~~~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 10 QVVKDTKEQLNRINNYITRHN----TAGDDDQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC----CC--CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888866521 1233566889999999999999888777765
No 50
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=28.56 E-value=1.4e+02 Score=22.35 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 022606 218 VLGLILFSCAVLYVV 232 (294)
Q Consensus 218 ~~~~~~fl~~i~~Ii 232 (294)
++|++||+++++.++
T Consensus 4 ~~G~~F~l~Vl~~l~ 18 (98)
T 3j00_Z 4 LAGILFLLTVLTTVL 18 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHH
Confidence 467667666654443
No 51
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=28.55 E-value=2.3e+02 Score=22.81 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022606 82 SAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 82 ~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
.-+.|.+.++..|.|++.-...
T Consensus 113 ekK~Rc~yL~~KLsHIK~lI~~ 134 (140)
T 1xaw_A 113 SKKNHCKQLKSKLSHIKKMVGD 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345666677777776665544
No 52
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.51 E-value=3.6e+02 Score=24.99 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC---------ChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 48 RLNGLAQDGLNLLNSLHLKLDLLAPQLP---------TSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 48 ~L~~~I~~~l~~l~~~ie~ldl~a~~~~---------~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
.....++..|+.++.++-+.+-.|..-. -+.+....+.|++++..++..+...++.+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655554443210 011112233466666666666666665544
No 53
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.02 E-value=2.6e+02 Score=23.20 Aligned_cols=38 Identities=11% Similarity=0.241 Sum_probs=16.3
Q ss_pred HHHHhhcC-CCCChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 65 LKLDLLAP-QLPTSDQVQSAQSLLQSWKKECNNLRLSLR 102 (294)
Q Consensus 65 e~ldl~a~-~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~r 102 (294)
.+|..+.. +-|+++.-.++..++..++.++...|.+++
T Consensus 99 ~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 99 YEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544443 334444334444444444444444444333
No 54
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=27.29 E-value=2.6e+02 Score=23.05 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhCc-chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHH
Q 022606 16 DEAYAKTQAHIKAIENYGK-SREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKEC 94 (294)
Q Consensus 16 ~~l~~~~~~~i~~l~~~~~-~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL 94 (294)
+..|..|-..++++-.++. +.. ... .+.-..|+.-=.+|+.++..-|.+...+| ++.+.+..+--..+-+|+
T Consensus 32 D~Vy~at~~VVkaV~~Ls~~v~~---a~~---eey~~~VK~VGl~LR~Ll~sVd~~~~~lp-~s~~rEVema~k~L~kDM 104 (162)
T 1k04_A 32 DKVYENVTGLVKAVIEMSSKIQP---APP---EEYVPMVKEVGLALRTLLATVDETIPLLP-ASTHREIEMAQKLLNSDL 104 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSC---CCG---GGHHHHHHHHHHHHHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhh---cCh---HHHHHHHHHHHHHHHHHHHhHhhhhhccC-HHhhHHHHHHHHHHHHHH
Confidence 3567777777777766531 111 111 23334445556678888888899999988 666888888888888999
Q ss_pred HHHHHHHHHHH
Q 022606 95 NNLRLSLRNAN 105 (294)
Q Consensus 95 ~~Lr~~~rkA~ 105 (294)
..|-...|.|+
T Consensus 105 ~eLis~mklaq 115 (162)
T 1k04_A 105 GELINKMKLAQ 115 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 98888888866
No 55
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.23 E-value=85 Score=22.78 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHH
Q 022606 52 LAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRL 99 (294)
Q Consensus 52 ~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~ 99 (294)
..++.+.-...-|+-|...+...+++..+..++.++.+|......|+.
T Consensus 34 ~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~ 81 (83)
T 2w2u_A 34 NAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKE 81 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456666677777766666567677788999999999887777654
No 56
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.53 E-value=2.2e+02 Score=22.00 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022606 83 AQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 83 ~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
+...+..++..+.++..++..+.
T Consensus 73 ~~~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 73 GELALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 33445555555555555555543
No 57
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=26.13 E-value=2.7e+02 Score=22.78 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhhCc-chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHH
Q 022606 16 DEAYAKTQAHIKAIENYGK-SREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKEC 94 (294)
Q Consensus 16 ~~l~~~~~~~i~~l~~~~~-~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL 94 (294)
+..|.-|-..++++-.++. +.. ..-.+.-..|+.--..++.+|..-|.++...| ++.+.+++.-=..+-+|+
T Consensus 22 D~VY~at~~VVkaV~~Ls~~v~~------a~~e~Y~~lVK~VGl~LR~Ll~sVd~~~~~lp-~s~~~EIema~k~L~kDM 94 (153)
T 3gm3_A 22 DLVYLNVMELVRAVLELKNELAQ------LPPEGYVVVVKNVGLTLRKLIGSVDDLLPSLP-SSSRTEIEGTQKLLNKDL 94 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGG------CCHHHHHHHHHHHHHHHHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhhhh------cChHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHH
Confidence 4567777777777766532 111 22224445566667789999999999999988 555677777777788999
Q ss_pred HHHHHHHHHHH
Q 022606 95 NNLRLSLRNAN 105 (294)
Q Consensus 95 ~~Lr~~~rkA~ 105 (294)
.+|-...|.|+
T Consensus 95 ~eLIs~MkLAq 105 (153)
T 3gm3_A 95 AELINKMRLAQ 105 (153)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988877
No 58
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=25.82 E-value=1.8e+02 Score=20.72 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=38.0
Q ss_pred HHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhhh
Q 022606 165 VERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQRQDI 211 (294)
Q Consensus 165 le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~RR~~ 211 (294)
=..+..+-+.|..|...|..+.+.+....+.|....+=+..+.++..
T Consensus 32 K~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~ 78 (82)
T 2nps_D 32 KNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566777778889999999999999999999888888888777643
No 59
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=25.71 E-value=2.1e+02 Score=21.26 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 022606 1 MDEVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQ-DGLNLLNSLHLKLDL 69 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~-~~l~~l~~~ie~ldl 69 (294)
|+++.++++-|-.|-.+.+..+...+..++.-........+-...+..|++... -++..+..++-.++.
T Consensus 1 m~~~~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~ 70 (113)
T 2lch_A 1 MGSHQEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMN 70 (113)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHH
Confidence 788999999999999999999999998887632111111122333344443221 234455555555553
No 60
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.63 E-value=2.7e+02 Score=23.04 Aligned_cols=66 Identities=5% Similarity=-0.046 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022606 3 EVVEAVEKAKKEWDEAYAKTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLA 71 (294)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a 71 (294)
++.+++++|..+-.++.+++..+-.++..+-..+. -+...+..+..+|.+-=..+...--++....
T Consensus 75 ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~---~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 75 TAQKIYDDYYTQTSALRQQLISKRYEYNALLTASS---PDTAKINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888777777777776421111 2334455555544333333333333444333
No 61
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.94 E-value=4.7e+02 Score=25.14 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022606 5 VEAVEKAKKEWDEAYAKTQAHIKAIENY 32 (294)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~i~~l~~~ 32 (294)
..-+-+|++.-..-++++...+.+|+..
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhh
Confidence 4456678887777888888888888753
No 62
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=23.87 E-value=3.1e+02 Score=22.75 Aligned_cols=48 Identities=8% Similarity=-0.016 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhcCCC-CChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 58 NLLNSLHLKLDLLAPQL-PTSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 58 ~~l~~~ie~ldl~a~~~-~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
..+...++.+...+... +.+..+......+..+...+...|...+...
T Consensus 117 ~~~~~~l~~l~~~~~~~~~~d~~~~~~~~~~~~l~~~ll~~R~~~~~fl 165 (258)
T 2yfa_A 117 IRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYI 165 (258)
T ss_dssp HHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444443 2222233344445555555555555555544
No 63
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.87 E-value=4.9e+02 Score=24.99 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 022606 85 SLLQSWKKECNNLR 98 (294)
Q Consensus 85 ~rV~~~k~dL~~Lr 98 (294)
..++.++..++.|.
T Consensus 175 ~~~~~l~~ki~~l~ 188 (464)
T 1m1j_B 175 AVIDSLHKKIQKLE 188 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333443333333
No 64
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=23.61 E-value=4.3e+02 Score=24.20 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhc----CCCCChHhHHHHHHHHHHHHHHHHHH
Q 022606 56 GLNLLNSLHLKLDLLA----PQLPTSDQVQSAQSLLQSWKKECNNL 97 (294)
Q Consensus 56 ~l~~l~~~ie~ldl~a----~~~~~~~~r~~~~~rV~~~k~dL~~L 97 (294)
.|.++...+.+|..++ ...-.+.+|..+...++++++++.++
T Consensus 61 AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei~qL~~eI~~i 106 (326)
T 3k8w_A 61 ALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRV 106 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665444 33344778888887777777777644
No 65
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.32 E-value=2.6e+02 Score=21.68 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022606 84 QSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 84 ~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
...+..++..+.++..++..+.
T Consensus 76 ~~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 76 CMQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555433
No 66
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.30 E-value=2.4e+02 Score=21.18 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----CChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 42 SSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQL----PTSDQVQSAQSLLQSWKKECNNLRLSLRNAN 105 (294)
Q Consensus 42 ~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~----~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~ 105 (294)
.+..+..+..+|......++..|+.|+...... ++++.-..-..-+..+...+..+-..|+.++
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q 115 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQ 115 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777776544321 2222222224444555555555555555544
No 67
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.97 E-value=2.2e+02 Score=20.60 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHhhhHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 022606 152 ESLRRTRQLMVQEVERNASTLMTFDESTGVLRKAESEYKGHRSLLMRTRNLLSTMQR 208 (294)
Q Consensus 152 ~~L~rt~~~m~~~le~g~~~L~~L~~q~~tL~~t~~~~~~~~~~L~~S~~ll~~i~R 208 (294)
+.|..-...+...=..+..+-..|..|...|..+...+..+++.|...++=+..+.+
T Consensus 29 ~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 29 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444455677777888899999999999999999999888777766543
No 68
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=28.62 E-value=18 Score=31.45 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC-cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHH
Q 022606 11 AKKEWDEAYAKTQAHIKAIENYG-KSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQS 89 (294)
Q Consensus 11 ~~~~~~~l~~~~~~~i~~l~~~~-~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~ 89 (294)
.+|.=+++|..|...+.++-.++ .+.+ .+. .+.-..|+.-=..|+.++..-|.+...+| ++.+.++.+.-..
T Consensus 4 LDRtnD~VY~att~VVKAV~~LSq~I~~---a~p---eeYv~lVK~VGl~LR~LL~sVDel~~~Lp-~Sa~rEIEma~Kv 76 (215)
T 2l6f_A 4 LDRSNDKVYENVTGLVKAVIEMSSKIQP---APP---EEYVPMVKEVGLALRTLLATVDESLPVLP-ASTHREIEMAQKL 76 (215)
Confidence 45666788888888888887764 2222 111 23334444445667777888888888877 5557788888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022606 90 WKKECNNLRLSLRNANL 106 (294)
Q Consensus 90 ~k~dL~~Lr~~~rkA~l 106 (294)
+.+|+..|-...|.|+.
T Consensus 77 LnKDM~ELIsaMKLaqq 93 (215)
T 2l6f_A 77 LNSDLAELINKMKLAQQ 93 (215)
Confidence 99999999999988773
No 69
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=22.43 E-value=78 Score=19.83 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 022606 216 ILVLGLILFSCAVLY 230 (294)
Q Consensus 216 il~~~~~~fl~~i~~ 230 (294)
-.++|+++|+++|+|
T Consensus 11 an~lG~~~~~LIVlY 25 (37)
T 2lat_A 11 ANMLGVSLFLLVVLY 25 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555555
No 70
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=22.35 E-value=2.8e+02 Score=21.71 Aligned_cols=45 Identities=9% Similarity=0.137 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 56 GLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNA 104 (294)
Q Consensus 56 ~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA 104 (294)
+...+...|.+++..++.-. ...+...+.+.+.++..++..++..
T Consensus 90 Ga~~l~~~c~~lE~~~~~~~----~~~~~~~l~~l~~e~~~~~~~L~~~ 134 (149)
T 1yvi_A 90 GAQKVKFTCMQFRQFCQDKS----RDGCLMALAVVRNDFYDLRNKFQTM 134 (149)
T ss_dssp TCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999998888743 3556778888888888888887763
No 71
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.17 E-value=2.9e+02 Score=21.70 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 022606 43 SNSLQRLNGLAQDGLNLLNSLHLKLDLLAP 72 (294)
Q Consensus 43 ~~~l~~L~~~I~~~l~~l~~~ie~ldl~a~ 72 (294)
...+..+..+++..|..++..+++|+.-+.
T Consensus 62 ~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 62 REELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667778888888888888888876555
No 72
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=21.80 E-value=2.8e+02 Score=26.39 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhc----CCCCChHhHHHHHHHHHHHHHHHHHH
Q 022606 56 GLNLLNSLHLKLDLLA----PQLPTSDQVQSAQSLLQSWKKECNNL 97 (294)
Q Consensus 56 ~l~~l~~~ie~ldl~a----~~~~~~~~r~~~~~rV~~~k~dL~~L 97 (294)
.|.++...+.+|..++ ...-.+.+|..+...+++++.++.++
T Consensus 40 AL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~I 85 (425)
T 3v47_C 40 ALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRV 85 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777775554 33445778988888888877777644
No 73
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=21.34 E-value=1.6e+02 Score=24.92 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 44 NSLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRNANL 106 (294)
Q Consensus 44 ~~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rkA~l 106 (294)
.........+...+..+..+..++ ...+++.+...+..|+.-=..-+......+..+..
T Consensus 120 a~~~~~y~~~~~rl~~I~~L~~~I----~~a~d~K~~aDLq~rI~aE~a~iqne~~klq~~~~ 178 (213)
T 1r8i_A 120 VMAEKAYNNQMQELSDMQALTEQI----KSTPDLKSIADLQARIQTSQGAIQGEQAKLNLMNM 178 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666655554 45566888899999988777767666666665553
No 74
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=21.11 E-value=3.3e+02 Score=21.92 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhhCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022606 6 EAVEKAKKEWDEAYA----KTQAHIKAIENYGKSREEKEKSSNSLQRLNGLAQDGLNLLNSLHLKLDLL 70 (294)
Q Consensus 6 ~~~~~~~~~~~~l~~----~~~~~i~~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~l~~~ie~ldl~ 70 (294)
+-|++.+.|++.|.. ++.+.|......|+..++. +.....+-++.+...|..|+..+.+....
T Consensus 9 ~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENa--eY~aak~~q~~~e~rI~~L~~~L~~A~vi 75 (158)
T 2p4v_A 9 EGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENA--DYQYNKKRLREIDRRVRYLTKCMENLKIV 75 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccch--hHHHHHHHHHHHHHHHHHHHHHHhhCeec
Confidence 568888889988865 6666776666666554432 12222333445555677777666655443
No 75
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=21.03 E-value=1.5e+02 Score=21.34 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHH
Q 022606 55 DGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLS 100 (294)
Q Consensus 55 ~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~ 100 (294)
+.+.....-|+-|-..+...+++..+..++.++.+|......|+..
T Consensus 29 eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~ 74 (83)
T 2v6y_A 29 DAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKV 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666665576777888999999998777766543
No 76
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.48 E-value=2.4e+02 Score=20.15 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022606 45 SLQRLNGLAQDGLNLLNSLHLKLDLLAPQLPTSDQVQSAQSLLQSWKKECNNLRLSLRN 103 (294)
Q Consensus 45 ~l~~L~~~I~~~l~~l~~~ie~ldl~a~~~~~~~~r~~~~~rV~~~k~dL~~Lr~~~rk 103 (294)
.+++|+..++...++++..=+. -..+..++.+...++..|+..+.+
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~-------------I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDAL-------------IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777776666665532211 233445566666666666666655
No 77
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=20.40 E-value=92 Score=19.38 Aligned_cols=16 Identities=19% Similarity=0.748 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 022606 215 VILVLGLILFSCAVLY 230 (294)
Q Consensus 215 ~il~~~~~~fl~~i~~ 230 (294)
+-.++|++.|+++++|
T Consensus 10 lan~lG~~~~~LIvlY 25 (36)
T 1rkl_A 10 LAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445565666666655
Done!