BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022607
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 358 bits (920), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 196/282 (69%), Positives = 219/282 (77%), Gaps = 9/282 (3%)
Query: 18 KLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGY 77
K YP PL+ HE V KD VFWDTLRRFH IM TKFMIPVIGGKELDLHVLYVE T RGGY
Sbjct: 25 KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84
Query: 78 EKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSASFS 137
EKVV EKKWREVG VF+FS TTTSASFVLRKHYL LL+HYEQVH F +GP P A+F
Sbjct: 85 EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATFH 144
Query: 138 VHSPSCRPGLALVEYSPKRI---NDHPDSHIEGQSCFTAVGRIDGKFDCGYLVSVKLGSE 194
+PS +ALVEY+P I N HP S +G S FTA+G I+GKFDCGYLV VKLGSE
Sbjct: 145 A-NPSTSKEMALVEYTPPSIRYHNTHPPS--QGSSSFTAIGTIEGKFDCGYLVKVKLGSE 201
Query: 195 TLSGVLYHPDHPGPSTSFCQSNDVGAIIPY--TPNSKRRYGRRRRSKRRGDPSYPKPNRS 252
L+GVLYH PGPS+S + A++PY T +RR G+RRRS+RR DP+YPKPNRS
Sbjct: 202 ILNGVLYHSAQPGPSSSPTAVLN-NAVVPYVETGRRRRRLGKRRRSRRREDPNYPKPNRS 260
Query: 253 GYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKV 294
GYNFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EER V
Sbjct: 261 GYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMV 302
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15
PE=2 SV=1
Length = 448
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 194/319 (60%), Gaps = 38/319 (11%)
Query: 4 SSAAKTKGRSVVEDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELD 63
+S++ K SV + + P +++E V DP +F +L R H ++GTKFM+P+IGG++LD
Sbjct: 2 ASSSCLKQGSVPMNNVCVTPEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLD 61
Query: 64 LHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFF 123
LH L+VE T+RGG K++ E++W+EV A F F PT T+AS+VLRK+Y +LL +YEQ++FF
Sbjct: 62 LHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFF 121
Query: 124 KMQG--PPCVPSASFSVHSPSCRP-----------GLALVEYSPK-RINDHPDSHIEGQS 169
+ G PP S+ SPS RP L + ++P+ +IN + G S
Sbjct: 122 RSNGQIPPD------SMQSPSARPCFIQGAIRPSQELQALTFTPQPKIN---TAEFLGGS 172
Query: 170 CF--TAVGRIDGKFDCGYLVSVKLGSETLSGVLYHPDHPGPSTSFCQSNDVGAIIPYTPN 227
VG IDGKF+ GYLV+V +GSE L GVLY P + S+ ++P T N
Sbjct: 173 LAGSNVVGVIDGKFESGYLVTVTIGSEQLKGVLYQ-LLPQNTVSYQTPQQSHGVLPNTLN 231
Query: 228 ------------SKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRERE 275
+KRR R++ +R DP +PKPNRSGYNFFFAE+H +LK L+P ++R+
Sbjct: 232 ISANPQGVAGGVTKRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRD 291
Query: 276 FTKMIGESWTNLSPEERKV 294
++MIGE W L+ +E+ +
Sbjct: 292 ISRMIGELWNKLNEDEKLI 310
>sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10
PE=2 SV=1
Length = 319
Score = 187 bits (476), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 159/272 (58%), Gaps = 22/272 (8%)
Query: 25 SSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEK 84
+ ++D+ ++ +FW+ LR F + +P +GG LDLH L++E T+RGG E+VV ++
Sbjct: 34 AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93
Query: 85 KWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSASFSVHSPSCR 144
KW+EV F F T TSASFVLRK+YL L+ E V++ + P +S + +
Sbjct: 94 KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYLEK------PVSSLQSTDEALK 147
Query: 145 PGLALVEYSPKRINDHPDSHI-EGQSCFTAVGRIDGKFDCGYLVSVKLGSETLSGVLYH- 202
+L SP +P+ I E Q + G IDGKFD GYLV++KLGS+ L GVLYH
Sbjct: 148 ---SLANESP-----NPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHI 199
Query: 203 PDHPGPSTSFCQSNDVGAIIPYTPNSKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKH 262
P P S ++ AI+ +S+RR+ R++ D PK +RSGYNFFFAE++
Sbjct: 200 PQTPSQSQQTMETP--SAIV---QSSQRRH-RKKSKLAVVDTQKPKCHRSGYNFFFAEQY 253
Query: 263 YKLKSLYPNREREFTKMIGESWTNLSPEERKV 294
+LK Y +ER TK IG W+NL+ E++V
Sbjct: 254 ARLKPEYHGQERSITKKIGHMWSNLTESEKQV 285
>sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11 OS=Arabidopsis thaliana
GN=HMGB11 PE=3 SV=2
Length = 337
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 150/269 (55%), Gaps = 37/269 (13%)
Query: 27 HEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKW 86
++D+ ++P +FW+ LR FH KF IP++GGK LDLH L+ E T+RGG EKV+ +++
Sbjct: 30 YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89
Query: 87 REVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSASFSVHSPSCRPG 146
+EV F F T T+++FVLRK YL +L+ +E +++F+ P ++F + +
Sbjct: 90 KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYFQ------APLSTFWEKEKALK-- 141
Query: 147 LALVEYSPKRINDHPDSHIEGQSCFTAVGRIDGKFDCGYLVSVKLGSETLSGVLYHPDHP 206
L+E S R D ++ + T + IDGKF+ GYL+S K+GSE L G+LYH
Sbjct: 142 -LLIEKSANR--DKDSQELKPGTVITGI--IDGKFESGYLISTKVGSEKLKGMLYH---- 192
Query: 207 GPSTSFCQSNDVGAIIPYTPNSKRRYGRRRRSKRRGDPSY-PKPNRSGYNFFFAEKHYKL 265
+P +KR G+++ +GD PK R+GYNFF AE+ ++
Sbjct: 193 -----------------ISPETKR--GKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRI 233
Query: 266 KSLYPNREREFTKMIGESWTNLSPEERKV 294
K+ ++ K G WTNLS +RKV
Sbjct: 234 KAENAGQKVSSPKNFGNMWTNLSESDRKV 262
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 84.3 bits (207), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 29 DVSKDPIVFWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWR 87
D + + F D LR+FH G+ F IP +GGKELDLH LY TT GG+ KV + +W
Sbjct: 11 DERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWG 70
Query: 88 EVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFF 123
E+ F F + ++A+F L+++YL L YE+VH F
Sbjct: 71 EIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHF 106
>sp|Q6GQD7|ARI3A_XENLA AT-rich interactive domain-containing protein 3A OS=Xenopus laevis
GN=arid3a PE=2 SV=1
Length = 539
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL++LYV T +GG +V+ +K WRE+
Sbjct: 215 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNL 274
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 275 PTSITSAAFTLRTQYMKYLYPYE 297
>sp|Q5XGD9|ARI3A_XENTR AT-rich interactive domain-containing protein 3A OS=Xenopus
tropicalis GN=arid3a PE=2 SV=1
Length = 541
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL++LYV T +GG +V+ +K WRE+
Sbjct: 218 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNL 277
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 278 PTSITSAAFTLRTQYMKYLYPYE 300
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3
Length = 1690
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGSL-LKSHYERILYPYE 170
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2
Length = 1690
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEIVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGSL-LKSHYERILYPYE 170
>sp|Q99856|ARI3A_HUMAN AT-rich interactive domain-containing protein 3A OS=Homo sapiens
GN=ARID3A PE=1 SV=2
Length = 593
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 244 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 303
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 304 PTSITSAAFTLRTQYMKYLYPYE 326
>sp|Q62431|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus
GN=Arid3a PE=1 SV=1
Length = 601
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 249 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 308
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 309 PTSITSAAFTLRTQYMKYLYPYE 331
>sp|Q9Z1N7|ARI3B_MOUSE AT-rich interactive domain-containing protein 3B OS=Mus musculus
GN=Arid3b PE=2 SV=1
Length = 568
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 10 KGRSVVED--KLYPAPLSSHEDVSKDP--IVFWDTLRRFHFIMGTKF-MIPVIGGKELDL 64
+GR + D KLY ++ DP F D L F GT IP++ + LDL
Sbjct: 196 RGREISRDFAKLY--------ELDGDPERKEFLDDLFIFMQKRGTPINRIPIMAKQILDL 247
Query: 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++LY T +GG +++ +K WRE+ + TSA+F LR Y+ LY YE
Sbjct: 248 YMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 301
>sp|Q8IVW6|ARI3B_HUMAN AT-rich interactive domain-containing protein 3B OS=Homo sapiens
GN=ARID3B PE=1 SV=2
Length = 561
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 10 KGRSVVED--KLYPAPLSSHEDVSKDP--IVFWDTLRRFHFIMGTKF-MIPVIGGKELDL 64
+GR + D KLY ++ DP F D L F GT IP++ + LDL
Sbjct: 198 RGREISRDFAKLY--------ELDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDL 249
Query: 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++LY T +GG +++ +K WRE+ + TSA+F LR Y+ LY YE
Sbjct: 250 YMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 303
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio
GN=arid3a PE=1 SV=1
Length = 570
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL+ LY T +GG +V+ +K WRE+
Sbjct: 238 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNL 297
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 298 PTSITSAAFTLRTQYMKYLYPYE 320
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus
GN=Arid3c PE=2 SV=2
Length = 409
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 116 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 175
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 176 PTTITSAAFTLRTQYMKYLYPYE 198
>sp|A6NKF2|ARI3C_HUMAN AT-rich interactive domain-containing protein 3C OS=Homo sapiens
GN=ARID3C PE=2 SV=1
Length = 412
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 119 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 178
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 179 PTTITSAAFTLRTQYMKYLYPYE 201
>sp|Q8MQH7|DRI_STRPU Protein dead ringer homolog OS=Strongylocentrotus purpuratus GN=dri
PE=2 SV=1
Length = 490
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L + GT IP++ + LDL+ LY +GG +V+ +K+WRE+
Sbjct: 208 FLDDLFSYMQKRGTPVNRIPIMAKQVLDLYELYNLVVAKGGLVEVINKKQWREITKGLNL 267
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 268 PASITSAAFTLRTQYMKYLYPYE 290
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 13 SVVEDKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLY 68
+V DKL P L+ E ++ + F D + +F + G+ IP++ K LDL+ L+
Sbjct: 204 AVDVDKLRFVPRVQRLNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLH 263
Query: 69 VEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGP 128
GG E+ ++KW +V ++ P++ S L+ HY +L+ +E K+ GP
Sbjct: 264 RIVQEEGGMEQTTKDRKWAKVANRMQY-PSSKSVGATLKAHYERILHPFEVYTSGKVLGP 322
Query: 129 PCVPSASFSVHSP 141
P++S S +P
Sbjct: 323 --TPTSSGSGSTP 333
>sp|Q4H3P5|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2
PE=2 SV=1
Length = 571
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL+ LY +GG +V+ +K WRE+
Sbjct: 255 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNL 314
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY +E
Sbjct: 315 PSSITSAAFTLRTQYMKYLYPFE 337
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2
Length = 911
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 29 DVSKDPI--VFWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKK 85
+++ DP F D L F GT +P++ LDL+ LY RGG V+ +K
Sbjct: 289 EINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKL 348
Query: 86 WREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
W+E+ + TSA+F LR Y+ LY YE
Sbjct: 349 WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 381
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1
OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3
Length = 467
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 39 DTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPT 98
D L H I IP++ + LDL+ LY GG +++ +K WRE+ +
Sbjct: 190 DWLNFMHRIGKPVTRIPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSS 249
Query: 99 TTSASFVLRKHYLTLLYHYE 118
TSA+F LR Y LY YE
Sbjct: 250 ITSAAFTLRTQYQKYLYDYE 269
>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila melanogaster GN=osa PE=1
SV=1
Length = 2716
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 29 DVSKDPIVFWDTLRRFHFIMGTKFMI-PVIGGKELDLHVLYVEATTRGGYEKVVAEKKWR 87
D + D + D LR F T P I + LDL+ LY+ RGG+ +V K W+
Sbjct: 998 DDNPDRRGWLDKLRAFMEERRTPITACPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWK 1057
Query: 88 EVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHF 122
++ + ++SA++ LRKHY L +E HF
Sbjct: 1058 DIAGLLGIG-ASSSAAYTLRKHYTKNLLTFE-CHF 1090
>sp|Q8BM75|ARI5B_MOUSE AT-rich interactive domain-containing protein 5B OS=Mus musculus
GN=Arid5b PE=1 SV=3
Length = 1188
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVA 82
LS E+ D F L ++ T IP +G K+++L ++ A GGYE + A
Sbjct: 312 LSIGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITA 371
Query: 83 EKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119
++W+ + +P +TSA+ R+HY L+ YE+
Sbjct: 372 RRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 408
>sp|E2R9X2|ARI5B_CANFA AT-rich interactive domain-containing protein 5B OS=Canis
familiaris GN=ARID5B PE=3 SV=1
Length = 1187
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 343 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 402
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 403 ILPYER 408
>sp|E1BLP6|ARI5B_BOVIN AT-rich interactive domain-containing protein 5B OS=Bos taurus
GN=ARID5B PE=3 SV=1
Length = 1173
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 346 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 405
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 406 ILPYER 411
>sp|Q5ZJ69|ARI5B_CHICK AT-rich interactive domain-containing protein 5B OS=Gallus gallus
GN=ARID5B PE=2 SV=1
Length = 1185
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 345 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 404
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 405 ILPYER 410
>sp|Q14865|ARI5B_HUMAN AT-rich interactive domain-containing protein 5B OS=Homo sapiens
GN=ARID5B PE=1 SV=3
Length = 1188
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 342 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 401
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 402 ILPYER 407
>sp|E7F888|ARI5B_DANRE AT-rich interactive domain-containing protein 5B OS=Danio rerio
GN=arid5b PE=3 SV=1
Length = 1044
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ V +P +TSA+ R+HY L
Sbjct: 236 IPYLGFKQINLWTMFQAAQKLGGYEVITARRQWKNVYDELGGNPGSTSAATCTRRHYERL 295
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 296 ILPYER 301
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2
Length = 1503
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 17 DKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEAT 72
D+L+ P L+ E ++ + F D + +F + G IP + K LDL+ L
Sbjct: 62 DRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWDLQGCTLKIPHVERKILDLYQLNKLVA 121
Query: 73 TRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117
GG++ V E++W ++ F+P S LR HY +LY Y
Sbjct: 122 DEGGFDLVCRERRWTKIAMTMGFAPGKAVGSH-LRAHYERILYPY 165
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1
Length = 1522
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 17 DKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEAT 72
DKL+ P L+ E ++ + F D + +F + G IP + K LDL L
Sbjct: 57 DKLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLFQLNRLVA 116
Query: 73 TRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117
GG++ V E+KW ++ F+P S + R HY +LY Y
Sbjct: 117 EEGGFDVVCKERKWTKIATRMGFAPGKAVGSHI-RAHYERILYPY 160
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2
Length = 1548
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + K LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLNKIVMEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P+ + +LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNY-PSGKNIGSLLRSHYERIIYPYE 165
>sp|A2BH40|ARI1A_MOUSE AT-rich interactive domain-containing protein 1A OS=Mus musculus
GN=Arid1a PE=1 SV=1
Length = 2283
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
+P +G K LDL+ LYV GG +V KKWRE+ T++SA+ L+K Y+
Sbjct: 1042 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVG-TSSSAASSLKKQYIQC 1100
Query: 114 LYHYE 118
LY +E
Sbjct: 1101 LYAFE 1105
>sp|O14497|ARI1A_HUMAN AT-rich interactive domain-containing protein 1A OS=Homo sapiens
GN=ARID1A PE=1 SV=3
Length = 2285
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
+P +G K LDL+ LYV GG +V KKWRE+ T++SA+ L+K Y+
Sbjct: 1041 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVG-TSSSAASSLKKQYIQC 1099
Query: 114 LYHYE 118
LY +E
Sbjct: 1100 LYAFE 1104
>sp|Q5XUN4|KDM5D_PANTR Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2
SV=1
Length = 1535
Score = 49.3 bits (116), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + K LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S +LR HY ++Y YE
Sbjct: 132 RRWARVAQRLHYPPGKNIGS-LLRSHYERIIYPYE 165
>sp|Q9BY66|KDM5D_HUMAN Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2
Length = 1539
Score = 49.3 bits (116), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + K LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S +LR HY ++Y YE
Sbjct: 132 RRWARVAQRLHYPPGKNIGS-LLRSHYERIIYPYE 165
>sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4
Length = 1554
Score = 48.5 bits (114), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + + LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S +LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNYPPGKNIGS-LLRSHYERIVYPYE 165
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2
SV=1
Length = 1556
Score = 48.1 bits (113), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + + LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S +LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNYPPGKNIGS-LLRSHYERIVYPYE 165
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2
Length = 1560
Score = 48.1 bits (113), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + + LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S +LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNYPPGKNIGS-LLRSHYERIVYPYE 165
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2
SV=1
Length = 1545
Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + + LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVMEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P + +LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNY-PAGKNIGSLLRSHYERIIYPYE 165
>sp|Q8NFD5|ARI1B_HUMAN AT-rich interactive domain-containing protein 1B OS=Homo sapiens
GN=ARID1B PE=1 SV=2
Length = 2236
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
+P +G K LDL LYV GG +V KKWRE+ T++SA+ L+K Y+
Sbjct: 1077 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVG-TSSSAASSLKKQYIQY 1135
Query: 114 LYHYE 118
L+ +E
Sbjct: 1136 LFAFE 1140
>sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3 OS=Arabidopsis
thaliana GN=ARID3 PE=2 SV=1
Length = 786
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%)
Query: 32 KDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGA 91
+D F L F F P G+ L+ L+ T GGY+KV K WR+VG
Sbjct: 495 EDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTGSKLWRQVGE 554
Query: 92 VFKFSPTTTSASFVLRKHYLTLLYHYEQ 119
F+ T T+ S+ R Y L YE+
Sbjct: 555 SFRPPKTCTTVSWTFRGFYEKALLEYER 582
>sp|Q09441|YP83_CAEEL ARID domain-containing protein C08B11.3 OS=Caenorhabditis elegans
GN=C08B11.3 PE=4 SV=1
Length = 1244
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 37 FWDTLRRFH-FIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F+++LR F+ +P + G E++L+ LY GG++KV A KW ++ +F
Sbjct: 30 FYNSLRMFYKRRWNATLKLPHVQGVEVNLYRLYDTVMALGGWQKVAASDKWSDIAEMFGC 89
Query: 96 SPTTTSASFVLRKHYLTLLYHYEQV 120
++ Y+ L +EQV
Sbjct: 90 KDDILCGDHAIKIIYMRYLSKFEQV 114
>sp|C0SUW7|ARID6_ARATH AT-rich interactive domain-containing protein 6 OS=Arabidopsis
thaliana GN=ARID6 PE=2 SV=1
Length = 398
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 33 DPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAV 92
+ + F + F+ +F P G+ L++ L+ GGYE V K WR+VG
Sbjct: 108 EQVAFLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTNKLWRQVGES 167
Query: 93 FKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSASFSVHS 140
F T T+ S+ R Y L YE+ + G +P ++ + S
Sbjct: 168 FNPPKTCTTVSYTFRNFYEKALLEYEKC--LRNNGELNLPGSTLILSS 213
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3
Length = 1544
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 17 DKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEAT 72
DKL+ P L+ E ++ + F D + ++ + G+ IP + K LDL L
Sbjct: 79 DKLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVA 138
Query: 73 TRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117
GG+ V ++KW ++ F+P S + R HY +L Y
Sbjct: 139 EEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHI-RGHYERILNPY 182
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1
Length = 1544
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 17 DKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEAT 72
DKL+ P L+ E ++ + F D + ++ + G+ IP + K LDL L
Sbjct: 79 DKLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVA 138
Query: 73 TRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117
GG+ V ++KW ++ F+P S + R HY +L Y
Sbjct: 139 EEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHI-RGHYERILNPY 182
>sp|P40632|NHP1_BABBO High mobility group protein homolog NHP1 OS=Babesia bovis PE=1 SV=1
Length = 97
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 231 RYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFT---KMIGESWTNL 287
R G RR K + DP+ PK S Y FF EK ++ + P ++ KMIG +W L
Sbjct: 7 RTGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNAL 66
Query: 288 SPEERK 293
S EE+K
Sbjct: 67 SDEEKK 72
>sp|Q3U108|ARI5A_MOUSE AT-rich interactive domain-containing protein 5A OS=Mus musculus
GN=Arid5a PE=1 SV=1
Length = 590
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
+P +G K+++L +Y G YE V + W+ V SP +TSA+ R+HY L
Sbjct: 74 VPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERL 133
Query: 114 LYHY 117
+ Y
Sbjct: 134 VLPY 137
>sp|Q03989|ARI5A_HUMAN AT-rich interactive domain-containing protein 5A OS=Homo sapiens
GN=ARID5A PE=1 SV=2
Length = 594
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
+P +G K+++L +Y G YE V + W+ V SP +TSA+ R+HY L
Sbjct: 79 VPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERL 138
Query: 114 LYHY 117
+ Y
Sbjct: 139 VLPY 142
>sp|Q3SWY1|ARI5A_BOVIN AT-rich interactive domain-containing protein 5A OS=Bos taurus
GN=ARID5A PE=2 SV=1
Length = 592
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
+P +G K+++L +Y G YE V + W+ V SP +TSA+ R+HY L
Sbjct: 76 VPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERL 135
Query: 114 LYHY 117
+ Y
Sbjct: 136 VLPY 139
>sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5 OS=Arabidopsis
thaliana GN=ARID5 PE=2 SV=1
Length = 434
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 32 KDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGA 91
+D F + F+ +F P G+ L+ L+ GGY+ V K WR+VG
Sbjct: 143 QDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVVTTSKLWRQVGE 202
Query: 92 VFKFSPTTTSASFVLRKHYLTLLYHYE----QVHFFKMQGPPCVPSASFSVHSPS 142
F T T+ S+ R Y L YE Q + G +PS+ + S
Sbjct: 203 SFHPPKTCTTVSWTFRIFYEKALLEYEKHLRQNGELNLPGSASLPSSGIEKEASS 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,305,738
Number of Sequences: 539616
Number of extensions: 5190153
Number of successful extensions: 10358
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 10181
Number of HSP's gapped (non-prelim): 205
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)