Query 022607
Match_columns 294
No_of_seqs 266 out of 1388
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 08:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 100.0 3.1E-29 1E-33 202.7 6.0 101 32-133 2-103 (107)
2 2jrz_A Histone demethylase jar 99.9 2.3E-27 7.8E-32 194.9 10.6 95 27-122 5-99 (117)
3 2eqy_A RBP2 like, jumonji, at 99.9 2.2E-27 7.5E-32 196.4 10.5 97 24-121 4-100 (122)
4 2jxj_A Histone demethylase jar 99.9 1.4E-27 4.6E-32 189.3 8.3 92 29-121 3-94 (96)
5 2rq5_A Protein jumonji; develo 99.9 2.9E-27 9.7E-32 195.8 10.1 91 32-122 11-102 (121)
6 2lm1_A Lysine-specific demethy 99.9 1.9E-27 6.6E-32 191.9 8.7 97 24-121 6-102 (107)
7 2cxy_A BAF250B subunit, HBAF25 99.9 5E-27 1.7E-31 194.8 11.2 96 32-128 20-116 (125)
8 1c20_A DEAD ringer protein; DN 99.9 1.3E-26 4.3E-31 193.0 9.7 91 32-122 21-112 (128)
9 1kkx_A Transcription regulator 99.9 2.9E-26 9.8E-31 190.2 9.1 90 26-120 11-101 (123)
10 2li6_A SWI/SNF chromatin-remod 99.9 2.7E-26 9.1E-31 188.2 8.0 98 24-127 10-108 (116)
11 2kk0_A AT-rich interactive dom 99.9 8.9E-26 3E-30 191.9 9.9 89 33-121 34-123 (145)
12 1wgf_A Upstream binding factor 99.7 1.4E-18 4.7E-23 135.7 4.7 61 234-294 8-69 (90)
13 2lhj_A High mobility group pro 99.7 4.3E-18 1.5E-22 134.5 4.6 62 233-294 9-73 (97)
14 2co9_A Thymus high mobility gr 99.7 6.7E-18 2.3E-22 134.7 5.7 61 234-294 5-66 (102)
15 2eqz_A High mobility group pro 99.7 1.7E-17 5.9E-22 128.2 5.3 58 237-294 6-66 (86)
16 1k99_A Upstream binding factor 99.7 1.2E-17 4E-22 132.9 4.4 57 238-294 2-59 (99)
17 1cg7_A Protein (NON histone pr 99.7 4.9E-18 1.7E-22 133.3 0.7 61 234-294 8-69 (93)
18 2e6o_A HMG box-containing prot 99.7 5.5E-17 1.9E-21 125.7 4.7 56 239-294 10-66 (87)
19 1hme_A High mobility group pro 99.7 6.1E-17 2.1E-21 122.1 4.7 54 241-294 1-55 (77)
20 2d7l_A WD repeat and HMG-box D 99.6 1E-16 3.6E-21 123.5 4.9 53 242-294 1-55 (81)
21 2crj_A SWI/SNF-related matrix- 99.6 1.8E-16 6.1E-21 124.0 5.1 54 241-294 2-56 (92)
22 1hry_A Human SRY; DNA, DNA-bin 99.6 1.3E-16 4.4E-21 120.0 3.8 52 243-294 1-53 (76)
23 1aab_A High mobility group pro 99.6 1.2E-16 3.9E-21 122.5 2.6 54 241-294 2-58 (83)
24 2cs1_A PMS1 protein homolog 1; 99.6 5E-16 1.7E-20 121.5 4.7 54 241-294 2-56 (92)
25 1wz6_A HMG-box transcription f 99.6 9.4E-16 3.2E-20 117.1 4.3 53 242-294 3-56 (82)
26 1j46_A SRY, sex-determining re 99.6 1.4E-15 4.8E-20 117.2 4.8 52 243-294 1-53 (85)
27 2gzk_A Sex-determining region 99.6 1.7E-15 6E-20 128.6 4.5 56 239-294 81-137 (159)
28 1i11_A Transcription factor SO 99.5 5.1E-15 1.7E-19 112.8 5.1 51 244-294 2-53 (81)
29 1ckt_A High mobility group 1 p 99.5 4.5E-15 1.5E-19 110.0 4.5 49 246-294 1-52 (71)
30 1wxl_A Single-strand recogniti 99.5 5E-15 1.7E-19 110.9 4.7 48 244-293 1-49 (73)
31 4euw_A Transcription factor SO 99.5 4.3E-15 1.5E-19 119.4 4.6 55 240-294 23-78 (106)
32 3f27_D Transcription factor SO 99.5 5.3E-15 1.8E-19 112.9 3.4 52 243-294 3-55 (83)
33 3nm9_A HMG-D, high mobility gr 99.5 8.8E-15 3E-19 109.5 4.2 46 244-289 1-47 (73)
34 1gt0_D Transcription factor SO 99.5 1E-14 3.5E-19 110.7 4.4 50 245-294 1-51 (80)
35 2yrq_A High mobility group pro 99.5 1.2E-14 4.2E-19 125.2 5.1 56 239-294 94-150 (173)
36 4a3n_A Transcription factor SO 99.5 7.5E-15 2.6E-19 108.5 3.0 50 245-294 1-51 (71)
37 2yrq_A High mobility group pro 99.5 1.3E-14 4.3E-19 125.1 4.7 59 236-294 5-66 (173)
38 2yuk_A Myeloid/lymphoid or mix 99.5 3.2E-16 1.1E-20 123.4 -5.0 54 237-294 13-69 (90)
39 3u2b_C Transcription factor SO 99.5 1.6E-14 5.4E-19 109.1 3.6 50 245-294 1-51 (79)
40 2lef_A LEF-1 HMG, protein (lym 99.5 2.3E-14 7.8E-19 110.4 4.4 49 246-294 2-51 (86)
41 1v64_A Nucleolar transcription 99.5 1.4E-14 4.7E-19 117.0 2.9 53 238-294 8-62 (108)
42 3fgh_A Transcription factor A, 99.4 3.5E-14 1.2E-18 104.4 2.3 47 245-294 1-47 (67)
43 2cto_A Novel protein; high mob 99.4 4.1E-14 1.4E-18 111.8 1.5 52 241-294 5-60 (93)
44 1l8y_A Upstream binding factor 99.4 1.8E-13 6E-18 107.9 4.2 50 245-294 3-52 (91)
45 3tq6_A Transcription factor A, 99.3 3.5E-14 1.2E-18 127.1 -4.2 54 238-294 106-159 (214)
46 3tmm_A Transcription factor A, 99.3 5E-14 1.7E-18 127.9 -3.8 54 238-294 138-191 (238)
47 3tmm_A Transcription factor A, 99.3 3.3E-13 1.1E-17 122.5 1.4 56 239-294 34-90 (238)
48 1v63_A Nucleolar transcription 99.3 2.1E-12 7.3E-17 102.9 4.1 51 242-294 4-55 (101)
49 2gzk_A Sex-determining region 96.0 0.004 1.4E-07 52.1 3.4 22 272-293 31-52 (159)
50 1ity_A TRF1; helix-turn-helix, 78.7 2.5 8.5E-05 30.3 4.3 41 66-116 20-60 (69)
51 1gvd_A MYB proto-oncogene prot 78.2 1.6 5.5E-05 29.4 2.9 39 66-116 13-51 (52)
52 3ukx_C Bimax2 peptide; arm rep 77.0 1.4 4.7E-05 26.4 1.9 20 231-250 5-24 (28)
53 2dim_A Cell division cycle 5-l 75.9 2.2 7.4E-05 30.7 3.3 39 66-116 19-57 (70)
54 1guu_A C-MYB, MYB proto-oncoge 75.2 2.5 8.7E-05 28.4 3.3 39 66-116 13-51 (52)
55 1x41_A Transcriptional adaptor 73.5 3.4 0.00012 28.8 3.7 38 66-115 18-55 (60)
56 2d9a_A B-MYB, MYB-related prot 71.4 3.4 0.00012 28.6 3.3 39 66-116 18-56 (60)
57 1w0t_A Telomeric repeat bindin 68.1 7.1 0.00024 26.3 4.3 39 66-114 12-50 (53)
58 2yum_A ZZZ3 protein, zinc fing 64.7 6.9 0.00024 28.3 3.9 46 66-118 18-63 (75)
59 2elk_A SPCC24B10.08C protein; 64.6 6.7 0.00023 27.2 3.6 39 66-115 19-57 (58)
60 3sjm_A Telomeric repeat-bindin 58.9 13 0.00044 26.4 4.3 40 66-115 21-60 (64)
61 2din_A Cell division cycle 5-l 58.1 14 0.00048 25.9 4.4 40 66-119 19-58 (66)
62 2cu7_A KIAA1915 protein; nucle 54.7 18 0.00063 25.8 4.7 41 66-119 19-59 (72)
63 2k9n_A MYB24; R2R3 domain, DNA 50.8 12 0.00042 28.8 3.4 39 66-116 11-49 (107)
64 2yus_A SWI/SNF-related matrix- 49.7 13 0.00044 27.6 3.2 35 66-113 28-62 (79)
65 1gv2_A C-MYB, MYB proto-oncoge 45.0 14 0.00049 28.0 2.9 38 66-115 14-51 (105)
66 1h8a_C AMV V-MYB, MYB transfor 36.4 28 0.00096 27.4 3.5 39 65-115 36-74 (128)
67 2cqq_A RSGI RUH-037, DNAJ homo 32.7 45 0.0016 24.2 3.8 41 66-116 18-58 (72)
68 2o37_A Protein SIS1; HSP40, J- 30.4 25 0.00086 26.1 2.1 35 258-292 26-63 (92)
69 1gv2_A C-MYB, MYB proto-oncoge 28.9 52 0.0018 24.8 3.7 38 65-115 65-102 (105)
70 2yua_A Williams-beuren syndrom 28.7 35 0.0012 25.7 2.7 35 258-292 35-75 (99)
71 1hdj_A Human HSP40, HDJ-1; mol 28.0 39 0.0013 24.0 2.7 34 259-292 22-60 (77)
72 2cqr_A RSGI RUH-043, DNAJ homo 27.7 55 0.0019 23.8 3.5 40 67-115 29-68 (73)
73 2k9n_A MYB24; R2R3 domain, DNA 27.6 74 0.0025 24.1 4.5 40 66-118 63-102 (107)
74 2och_A Hypothetical protein DN 27.1 32 0.0011 24.3 2.1 35 258-292 26-63 (73)
75 3zqc_A MYB3; transcription-DNA 26.5 54 0.0018 25.9 3.6 38 66-116 64-101 (131)
76 2do5_A Splicing factor 3B subu 26.0 61 0.0021 22.5 3.2 28 32-59 29-56 (58)
77 3tu3_A EXOU chaperone, SPCU; t 25.7 10 0.00035 31.1 -0.9 31 178-208 57-90 (161)
78 2lo0_A Uncharacterized protein 25.6 33 0.0011 25.6 1.9 17 32-48 37-53 (75)
79 2ltp_A Nuclear receptor corepr 31.2 15 0.00051 27.7 0.0 30 85-119 37-66 (89)
80 3osg_A MYB21; transcription-DN 24.8 55 0.0019 25.7 3.3 37 66-115 21-57 (126)
81 2lpy_A Matrix protein P10; GAG 24.4 1.3E+02 0.0045 24.3 5.5 55 33-94 6-63 (124)
82 1bax_A M-PMV MA, M-PMV matrix 23.8 61 0.0021 25.1 3.2 54 34-94 8-64 (94)
83 1h89_C C-MYB, MYB proto-oncoge 21.9 65 0.0022 26.2 3.3 38 66-115 68-105 (159)
84 2ctp_A DNAJ homolog subfamily 21.8 34 0.0012 24.4 1.4 34 259-292 26-64 (78)
85 2dn9_A DNAJ homolog subfamily 21.4 30 0.001 24.7 1.0 35 258-292 25-65 (79)
86 1fad_A Protein (FADD protein); 20.2 56 0.0019 24.4 2.4 31 61-98 10-40 (99)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.95 E-value=3.1e-29 Score=202.70 Aligned_cols=101 Identities=28% Similarity=0.471 Sum_probs=94.9
Q ss_pred cChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHH
Q 022607 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (294)
Q Consensus 32 ~~~~~Fl~~L~~F~~~rG~~l-~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y 110 (294)
++++.|+++|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||++++|.+||+.||++.+++++++.||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 478999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHhhccCCCCCCC
Q 022607 111 LTLLYHYEQVHFFKMQGPPCVPS 133 (294)
Q Consensus 111 ~k~L~~YE~~~~~~~~~~~~~p~ 133 (294)
++||++||+ ++.++++.+.||+
T Consensus 82 ~k~L~~yE~-~~~~~~~~~~p~~ 103 (107)
T 1ig6_A 82 ERLILPYER-FIKGEEDKPLPPI 103 (107)
T ss_dssp HHHTTTTHH-HHHHHTSSSSCTT
T ss_pred HHHHHHHHH-HHcCCCCCCCCCC
Confidence 999999999 5668877777664
No 2
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.94 E-value=2.3e-27 Score=194.94 Aligned_cols=95 Identities=26% Similarity=0.532 Sum_probs=90.0
Q ss_pred CCccccChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHH
Q 022607 27 HEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVL 106 (294)
Q Consensus 27 ~e~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~L 106 (294)
.|+.++++..|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++|+++++|.+||..||++++ +++++.|
T Consensus 5 le~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~L 83 (117)
T 2jrz_A 5 LEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLL 83 (117)
T ss_dssp HHTSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999999987 7899999
Q ss_pred HHHHHHhhHHHHHHHH
Q 022607 107 RKHYLTLLYHYEQVHF 122 (294)
Q Consensus 107 k~~Y~k~L~~YE~~~~ 122 (294)
|.+|.+||++||++..
T Consensus 84 k~~Y~k~L~~yE~~~~ 99 (117)
T 2jrz_A 84 RSHYERIVYPYEMYQS 99 (117)
T ss_dssp HHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999643
No 3
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=2.2e-27 Score=196.41 Aligned_cols=97 Identities=26% Similarity=0.465 Sum_probs=91.0
Q ss_pred CCCCCccccChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHH
Q 022607 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (294)
Q Consensus 24 ~~~~e~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas 103 (294)
+.+.|+.+++++.|+++|.+||+.+|++|++|+|+|++||||+||.+|+++|||++||++++|.+||+.||++++ ++++
T Consensus 4 Lnele~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~-~~~~ 82 (122)
T 2eqy_A 4 GSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPG-KAVG 82 (122)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSS-SHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHcCCCCCCCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCC-CcHH
Confidence 456678889999999999999999999999999999999999999999999999999999999999999999975 5688
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 022607 104 FVLRKHYLTLLYHYEQVH 121 (294)
Q Consensus 104 ~~Lk~~Y~k~L~~YE~~~ 121 (294)
+.||++|++||++||++.
T Consensus 83 ~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 83 SHIRGHYERILNPYNLFL 100 (122)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999943
No 4
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=189.32 Aligned_cols=92 Identities=35% Similarity=0.597 Sum_probs=87.0
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHH
Q 022607 29 DVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRK 108 (294)
Q Consensus 29 ~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~ 108 (294)
+.+++++.|+++|.+||+.+|+++++|.|+|++||||+||.+|+++|||++|+++++|.+||+.||++.++ ++++.||+
T Consensus 3 ~~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~ 81 (96)
T 2jxj_A 3 LGSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKS 81 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCCCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999876 57889999
Q ss_pred HHHHhhHHHHHHH
Q 022607 109 HYLTLLYHYEQVH 121 (294)
Q Consensus 109 ~Y~k~L~~YE~~~ 121 (294)
+|++||++||++.
T Consensus 82 ~Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 82 HYERILYPYELFQ 94 (96)
T ss_dssp HHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999963
No 5
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.94 E-value=2.9e-27 Score=195.78 Aligned_cols=91 Identities=22% Similarity=0.410 Sum_probs=86.4
Q ss_pred cChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHH
Q 022607 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (294)
Q Consensus 32 ~~~~~Fl~~L~~F~~~rG~~l-~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y 110 (294)
.....|+++|.+||+.+|++| ++|.|+|++||||+||.+|+++|||++||++++|++||..||||++++++++.||.+|
T Consensus 11 ~~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y 90 (121)
T 2rq5_A 11 GPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAY 90 (121)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHH
Confidence 356789999999999999999 5999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHH
Q 022607 111 LTLLYHYEQVHF 122 (294)
Q Consensus 111 ~k~L~~YE~~~~ 122 (294)
.+||++||++..
T Consensus 91 ~k~L~~YE~~~~ 102 (121)
T 2rq5_A 91 CQYLLSYDSLSP 102 (121)
T ss_dssp HTTHHHHHHCCH
T ss_pred HHHhHHHHCcCH
Confidence 999999998543
No 6
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.94 E-value=1.9e-27 Score=191.89 Aligned_cols=97 Identities=26% Similarity=0.484 Sum_probs=90.7
Q ss_pred CCCCCccccChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHH
Q 022607 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (294)
Q Consensus 24 ~~~~e~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas 103 (294)
+.+.++..++++.|+++|.+||+.+|+++++|.|+|++||||+||.+|+++|||++|+++++|.+||..||++.+ ++++
T Consensus 6 L~el~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~ 84 (107)
T 2lm1_A 6 LNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVG 84 (107)
T ss_dssp SCSSCCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHH
T ss_pred hhhccCCchHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHH
Confidence 345566778999999999999999999999999999999999999999999999999999999999999999975 7899
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 022607 104 FVLRKHYLTLLYHYEQVH 121 (294)
Q Consensus 104 ~~Lk~~Y~k~L~~YE~~~ 121 (294)
+.||++|.+||++||++.
T Consensus 85 ~~lk~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 85 ATLKAHYERILHPFEVYT 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999964
No 7
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.94 E-value=5e-27 Score=194.85 Aligned_cols=96 Identities=29% Similarity=0.467 Sum_probs=90.1
Q ss_pred cChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHH
Q 022607 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (294)
Q Consensus 32 ~~~~~Fl~~L~~F~~~rG~~l-~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y 110 (294)
.+++.|+++|.+||+.+|+++ ++|.|+|++||||+||.+|+++|||++|+++++|.+||+.||++. ++++++.||++|
T Consensus 20 ~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~s~~~~Lk~~Y 98 (125)
T 2cxy_A 20 PERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT-SSSAASSLKKQY 98 (125)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS-SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCC-CCcHHHHHHHHH
Confidence 477789999999999999999 799999999999999999999999999999999999999999996 478999999999
Q ss_pred HHhhHHHHHHHHhhccCC
Q 022607 111 LTLLYHYEQVHFFKMQGP 128 (294)
Q Consensus 111 ~k~L~~YE~~~~~~~~~~ 128 (294)
++||++||+++..++..+
T Consensus 99 ~k~L~~yE~~~~~g~~~p 116 (125)
T 2cxy_A 99 IQYLFAFECKIERGEEPP 116 (125)
T ss_dssp HHHTHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 999999999988877544
No 8
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.93 E-value=1.3e-26 Score=193.05 Aligned_cols=91 Identities=33% Similarity=0.511 Sum_probs=88.3
Q ss_pred cChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHH
Q 022607 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (294)
Q Consensus 32 ~~~~~Fl~~L~~F~~~rG~~l-~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y 110 (294)
++++.|+++|.+||+.+|+++ ++|.|+|++||||+||.+|+++|||++|+.+++|.+||..||++.+++++++.||++|
T Consensus 21 ~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y 100 (128)
T 1c20_A 21 PKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQY 100 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCccceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 689999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHH
Q 022607 111 LTLLYHYEQVHF 122 (294)
Q Consensus 111 ~k~L~~YE~~~~ 122 (294)
++||++||+++.
T Consensus 101 ~k~L~~yE~~~~ 112 (128)
T 1c20_A 101 MKYLYPYECEKK 112 (128)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999764
No 9
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.93 E-value=2.9e-26 Score=190.17 Aligned_cols=90 Identities=24% Similarity=0.393 Sum_probs=83.6
Q ss_pred CCCccccChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHH
Q 022607 26 SHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASF 104 (294)
Q Consensus 26 ~~e~~~~~~~~Fl~~L~~F~~~rG~~l-~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~ 104 (294)
-|++..++++.|+++|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||++++|++||+.||+++ ++
T Consensus 11 ~~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~ 85 (123)
T 1kkx_A 11 HHGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQ 85 (123)
T ss_dssp ----CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HH
T ss_pred ccCCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HH
Confidence 367888999999999999999999999 899999999999999999999999999999999999999999996 67
Q ss_pred HHHHHHHHhhHHHHHH
Q 022607 105 VLRKHYLTLLYHYEQV 120 (294)
Q Consensus 105 ~Lk~~Y~k~L~~YE~~ 120 (294)
.||++|++||++||++
T Consensus 86 ~Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 86 QLESIYFRILLPYERH 101 (123)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999993
No 10
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-26 Score=188.21 Aligned_cols=98 Identities=26% Similarity=0.395 Sum_probs=89.6
Q ss_pred CCCCCccccChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcH
Q 022607 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSA 102 (294)
Q Consensus 24 ~~~~e~~~~~~~~Fl~~L~~F~~~rG~~l-~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsa 102 (294)
+.+.|...++++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||++++|.+||..||+++
T Consensus 10 ln~~e~~~~~~~~F~~~L~~F~~~~G~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~----- 84 (116)
T 2li6_A 10 KISTELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD----- 84 (116)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHHTTTSCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-----
T ss_pred hhcccccchhHHHHHHHHHHHHHHcCCCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-----
Confidence 35566777899999999999999999999 799999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhccC
Q 022607 103 SFVLRKHYLTLLYHYEQVHFFKMQG 127 (294)
Q Consensus 103 s~~Lk~~Y~k~L~~YE~~~~~~~~~ 127 (294)
++.||.+|++||++||+ |+.+.++
T Consensus 85 ~~~Lr~~Y~k~L~~yE~-~~~~~~g 108 (116)
T 2li6_A 85 YQQLESIYFRILLPYER-HMISQEG 108 (116)
T ss_dssp TTHHHHHHHHHHSHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH-HHhCccc
Confidence 46999999999999999 5555544
No 11
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.92 E-value=8.9e-26 Score=191.91 Aligned_cols=89 Identities=37% Similarity=0.614 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHH
Q 022607 33 DPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYL 111 (294)
Q Consensus 33 ~~~~Fl~~L~~F~~~rG~~l-~~P~i~Gk~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~ 111 (294)
+++.|+++|.+||+.+|+++ ++|.|+|++||||+||.+|+++|||++|+++++|.+||..||++.+++++++.||++|+
T Consensus 34 ~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~ 113 (145)
T 2kk0_A 34 KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYM 113 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCccceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 48999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHH
Q 022607 112 TLLYHYEQVH 121 (294)
Q Consensus 112 k~L~~YE~~~ 121 (294)
+||++||+..
T Consensus 114 k~L~~yE~~~ 123 (145)
T 2kk0_A 114 KYLYPYECEK 123 (145)
T ss_dssp HHSSHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999964
No 12
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.73 E-value=1.4e-18 Score=135.69 Aligned_cols=61 Identities=25% Similarity=0.450 Sum_probs=56.2
Q ss_pred ccccccCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 234 RRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 234 ~kk~~k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
+++++++.+||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~ 69 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAK 69 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 44556677899999999999999999999999999999 99999999999999999999863
No 13
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.71 E-value=4.3e-18 Score=134.48 Aligned_cols=62 Identities=40% Similarity=0.623 Sum_probs=57.6
Q ss_pred cccccccCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-C--hHHHHHHHHHHhcCCCccccCC
Q 022607 233 GRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 233 ~~kk~~k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~--~~eisK~ige~Wk~Ls~eEK~p 294 (294)
.+++++++.+||++||||+||||||++++|.+|+.+||+ + +.||+++||++|++|+++||++
T Consensus 9 ~k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~ 73 (97)
T 2lhj_A 9 GVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKP 73 (97)
T ss_dssp SCCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSS
T ss_pred cccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHH
Confidence 455667788999999999999999999999999999999 7 8999999999999999999975
No 14
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.7e-18 Score=134.74 Aligned_cols=61 Identities=28% Similarity=0.582 Sum_probs=55.7
Q ss_pred ccccccCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 234 RRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 234 ~kk~~k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
.++++++.+||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 5 ~~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~ 66 (102)
T 2co9_A 5 SSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQV 66 (102)
T ss_dssp CCCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 34445667999999999999999999999999999999 89999999999999999999863
No 15
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=128.18 Aligned_cols=58 Identities=31% Similarity=0.507 Sum_probs=53.2
Q ss_pred cccCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-C--hHHHHHHHHHHhcCCCccccCC
Q 022607 237 RSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 237 ~~k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~--~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++++++||++||||+||||||++++|++|+.+||+ . +.||+++||++|++|+++||++
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 66 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSK 66 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHH
Confidence 34567999999999999999999999999999999 4 6999999999999999999863
No 16
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.68 E-value=1.2e-17 Score=132.87 Aligned_cols=57 Identities=26% Similarity=0.489 Sum_probs=53.7
Q ss_pred ccCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 238 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 238 ~k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
+++++||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++||++||++
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~ 59 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMK 59 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4567899999999999999999999999999999 89999999999999999999863
No 17
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.67 E-value=4.9e-18 Score=133.31 Aligned_cols=61 Identities=33% Similarity=0.635 Sum_probs=56.2
Q ss_pred ccccccCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 234 RRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 234 ~kk~~k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
+++++++.+||++||||+|||+||++++|..|+.+||+ ++.||+++||++|++|+++||++
T Consensus 8 k~~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~ 69 (93)
T 1cg7_A 8 KKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQP 69 (93)
T ss_dssp CCCCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHH
T ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 44556778999999999999999999999999999999 89999999999999999999863
No 18
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.65 E-value=5.5e-17 Score=125.72 Aligned_cols=56 Identities=20% Similarity=0.495 Sum_probs=53.1
Q ss_pred cCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 239 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 239 k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++.+||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~ 66 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRM 66 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHH
Confidence 467899999999999999999999999999999 89999999999999999999863
No 19
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.65 E-value=6.1e-17 Score=122.09 Aligned_cols=54 Identities=28% Similarity=0.493 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 241 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 241 ~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++||++||||+|||+||++++|..|+.+||+ ++.||+++||++|++|+++||++
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~ 55 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 55 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4799999999999999999999999999999 89999999999999999999863
No 20
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1e-16 Score=123.48 Aligned_cols=53 Identities=26% Similarity=0.383 Sum_probs=50.3
Q ss_pred CCCCCCCCCCchhHhhhHHhHHHHHhhCCC-C-hHHHHHHHHHHhcCCCccccCC
Q 022607 242 GDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R-EREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 242 kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~-~~eisK~ige~Wk~Ls~eEK~p 294 (294)
.||++||||+||||||++++|.+|+.+||+ + +.||+|+||++|++|+++||++
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~ 55 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKV 55 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHH
Confidence 379999999999999999999999999999 6 8999999999999999999864
No 21
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.63 E-value=1.8e-16 Score=124.02 Aligned_cols=54 Identities=31% Similarity=0.599 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 241 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 241 ~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
.+||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~ 56 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQR 56 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4799999999999999999999999999999 89999999999999999999863
No 22
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.62 E-value=1.3e-16 Score=120.04 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=48.3
Q ss_pred CCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 243 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 243 Dp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~ 53 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWP 53 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHH
Confidence 89999999999999999999999999999 88999999999999999999863
No 23
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.61 E-value=1.2e-16 Score=122.49 Aligned_cols=54 Identities=31% Similarity=0.584 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-C--hHHHHHHHHHHhcCCCccccCC
Q 022607 241 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 241 ~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~--~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++||++||||+||||||++++|.+|+.+||+ + +.||+++||++|++|+++||++
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 58 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 58 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHH
Confidence 4899999999999999999999999999999 4 5999999999999999999863
No 24
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5e-16 Score=121.46 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 241 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 241 ~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
..||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~ 56 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLK 56 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 4689999999999999999999999999999 89999999999999999999863
No 25
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.57 E-value=9.4e-16 Score=117.13 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=50.8
Q ss_pred CCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 242 GDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 242 kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
.||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~ 56 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQK 56 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHH
Confidence 689999999999999999999999999999 89999999999999999999863
No 26
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.57 E-value=1.4e-15 Score=117.17 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=49.7
Q ss_pred CCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 243 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 243 Dp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
+|++||||+||||||++++|..|+.+||+ ++.||+++||++|++|+++||++
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~ 53 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWP 53 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHH
Confidence 58999999999999999999999999999 89999999999999999999863
No 27
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.55 E-value=1.7e-15 Score=128.60 Aligned_cols=56 Identities=29% Similarity=0.510 Sum_probs=52.8
Q ss_pred cCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 239 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 239 k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++.+||++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 81 k~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~ 137 (159)
T 2gzk_A 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 137 (159)
T ss_dssp GGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 446899999999999999999999999999999 89999999999999999999863
No 28
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.53 E-value=5.1e-15 Score=112.79 Aligned_cols=51 Identities=14% Similarity=0.406 Sum_probs=48.1
Q ss_pred CCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 244 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 244 p~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
+++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~ 53 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQP 53 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHH
Confidence 5789999999999999999999999999 89999999999999999999863
No 29
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.53 E-value=4.5e-15 Score=110.01 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=46.0
Q ss_pred CCCCCCchhHhhhHHhHHHHHhhCCC-C--hHHHHHHHHHHhcCCCccccCC
Q 022607 246 YPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 246 ~PKrp~saY~lF~~e~r~~lk~~~P~-~--~~eisK~ige~Wk~Ls~eEK~p 294 (294)
+||||+|||+||++++|+.++.+||+ + +.||+++||++|++|+++||++
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 52 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 52 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHH
Confidence 59999999999999999999999999 4 4999999999999999999864
No 30
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.53 E-value=5e-15 Score=110.87 Aligned_cols=48 Identities=21% Similarity=0.486 Sum_probs=45.8
Q ss_pred CCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccC
Q 022607 244 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERK 293 (294)
Q Consensus 244 p~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~ 293 (294)
|++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++| +||+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~ 49 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKS 49 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhH
Confidence 7999999999999999999999999999 8999999999999999 6664
No 31
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.53 E-value=4.3e-15 Score=119.38 Aligned_cols=55 Identities=20% Similarity=0.391 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 240 RRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 240 ~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
..+||++||||+||||||++++|++++.+||+ ++.||+++||++|++|+++||++
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~ 78 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRP 78 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 36889999999999999999999999999999 89999999999999999999863
No 32
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.51 E-value=5.3e-15 Score=112.92 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=46.4
Q ss_pred CCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 243 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 243 Dp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++++||||+||||||++++|..|+.+||+ ++.||+++||++|++|+++||++
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~ 55 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRP 55 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 57899999999999999999999999999 89999999999999999999863
No 33
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.50 E-value=8.8e-15 Score=109.50 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=44.3
Q ss_pred CCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCc
Q 022607 244 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSP 289 (294)
Q Consensus 244 p~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~ 289 (294)
.++||||+||||||++++|++|+.+||+ ++.||+++||++|++|++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 47 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD 47 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc
Confidence 4789999999999999999999999999 899999999999999987
No 34
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.50 E-value=1e-14 Score=110.70 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=47.6
Q ss_pred CCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 245 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 245 ~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++||||+||||||++++|.+++.+||+ ++.||+++||++|++|+++||++
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~ 51 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRP 51 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 479999999999999999999999999 89999999999999999999863
No 35
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=125.23 Aligned_cols=56 Identities=29% Similarity=0.510 Sum_probs=52.5
Q ss_pred cCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 239 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 239 k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++.+||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 94 k~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~ 150 (173)
T 2yrq_A 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 150 (173)
T ss_dssp CSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHH
T ss_pred ccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 345799999999999999999999999999999 99999999999999999999863
No 36
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.49 E-value=7.5e-15 Score=108.53 Aligned_cols=50 Identities=20% Similarity=0.460 Sum_probs=44.5
Q ss_pred CCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 245 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 245 ~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++||||+|||+||++++|++++.+||+ ++.||+++||++|++|+++||++
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~ 51 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRP 51 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 368999999999999999999999999 89999999999999999999863
No 37
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=125.13 Aligned_cols=59 Identities=29% Similarity=0.508 Sum_probs=54.1
Q ss_pred ccccCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC---ChHHHHHHHHHHhcCCCccccCC
Q 022607 236 RRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN---REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 236 k~~k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~---~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++++.++||++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 66 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 66 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 334667899999999999999999999999999999 68999999999999999999863
No 38
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.49 E-value=3.2e-16 Score=123.36 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=49.0
Q ss_pred cccCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-C--hHHHHHHHHHHhcCCCccccCC
Q 022607 237 RSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 237 ~~k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~--~~eisK~ige~Wk~Ls~eEK~p 294 (294)
..+..+|||+||||+|||||||+++|.+|+.+||+ + +.||+ ++|++|+++||+|
T Consensus 13 ~~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~p 69 (90)
T 2yuk_A 13 TLKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAP 69 (90)
T ss_dssp HHHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHH
T ss_pred HhhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHH
Confidence 34455699999999999999999999999999999 7 88888 9999999999974
No 39
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.47 E-value=1.6e-14 Score=109.14 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=47.5
Q ss_pred CCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 245 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 245 ~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++||||+||||||++++|++|+.+||+ ++.||+++||++|++|+++||++
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~ 51 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIP 51 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 479999999999999999999999999 89999999999999999999863
No 40
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.47 E-value=2.3e-14 Score=110.44 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=47.0
Q ss_pred CCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 246 YPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 246 ~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
+||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~ 51 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAK 51 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 69999999999999999999999999 89999999999999999999863
No 41
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.46 E-value=1.4e-14 Score=117.05 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=48.4
Q ss_pred ccCCCCCCCC-CCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 238 SKRRGDPSYP-KPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 238 ~k~~kDp~~P-Krp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
.++.+||++| |||+|||+||++++|.+|+ + ++.||+++||++|++|+++||++
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~ 62 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDA 62 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556899999 9999999999999999987 5 88999999999999999999863
No 42
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.42 E-value=3.5e-14 Score=104.43 Aligned_cols=47 Identities=38% Similarity=0.614 Sum_probs=43.6
Q ss_pred CCCCCCCchhHhhhHHhHHHHHhhCCCChHHHHHHHHHHhcCCCccccCC
Q 022607 245 SYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 245 ~~PKrp~saY~lF~~e~r~~lk~~~P~~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++||||+|||+||++++|.+++.+|| .||+++||++|++|+++||++
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~ 47 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKEL 47 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHTCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhhCCHHHHHH
Confidence 58999999999999999999998876 699999999999999999864
No 43
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.1e-14 Score=111.84 Aligned_cols=52 Identities=25% Similarity=0.394 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHH---HHHhcCCCccccCC
Q 022607 241 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMI---GESWTNLSPEERKV 294 (294)
Q Consensus 241 ~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~i---ge~Wk~Ls~eEK~p 294 (294)
..++++||||+||||||++++|++|+.+ + ++.||+|+| |++|++|+++||++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~p 60 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEK 60 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5789999999999999999999999998 6 889999999 99999999999864
No 44
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.38 E-value=1.8e-13 Score=107.89 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=48.0
Q ss_pred CCCCCCCchhHhhhHHhHHHHHhhCCCChHHHHHHHHHHhcCCCccccCC
Q 022607 245 SYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 245 ~~PKrp~saY~lF~~e~r~~lk~~~P~~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
+.||||+|||+||+++.|..++.+||+++.||+|+||++|++|+++||+|
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~eK~p 52 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLM 52 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999864
No 45
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.32 E-value=3.5e-14 Score=127.09 Aligned_cols=54 Identities=35% Similarity=0.493 Sum_probs=48.6
Q ss_pred ccCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCCChHHHHHHHHHHhcCCCccccCC
Q 022607 238 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 238 ~k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++..+||++||||+|||||||+++|.+|+.+||+ ||+++||++|++|+++||++
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~---ei~k~lg~~Wk~ls~~eK~~ 159 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ---EKLKTVKENWKNLSDSEKEL 159 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSHH---HHHHHHHHHHHTCCHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCHH---HHHHHHHHHHHcCCHHHHHH
Confidence 4456899999999999999999999999877665 99999999999999999864
No 46
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.31 E-value=5e-14 Score=127.90 Aligned_cols=54 Identities=35% Similarity=0.493 Sum_probs=48.8
Q ss_pred ccCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCCChHHHHHHHHHHhcCCCccccCC
Q 022607 238 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 238 ~k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
++..+||++||||+|||||||+++|.+|+.+||+ ||+++||++|++|+++||++
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~---ei~k~lg~~Wk~ls~~eK~~ 191 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ---EKLKTVKENWKNLSDSEKEL 191 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH---HHHHHHHHHHHTCCTTTTHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCHH---HHHHHHHHHHHhCCHHHHHH
Confidence 4456899999999999999999999999887665 89999999999999999964
No 47
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.30 E-value=3.3e-13 Score=122.52 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=52.2
Q ss_pred cCCCCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 239 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 239 k~~kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
...+||++||||+|||+||++++|.+|+.+||+ .+.||+++||++|++|+++||++
T Consensus 34 ~s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~ 90 (238)
T 3tmm_A 34 SSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKI 90 (238)
T ss_dssp -CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 346799999999999999999999999999999 99999999999999999999863
No 48
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.27 E-value=2.1e-12 Score=102.89 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=43.6
Q ss_pred CCCCCCCCCCchhHhhhHHhHHHHHhhCCC-ChHHHHHHHHHHhcCCCccccCC
Q 022607 242 GDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKV 294 (294)
Q Consensus 242 kDp~~PKrp~saY~lF~~e~r~~lk~~~P~-~~~eisK~ige~Wk~Ls~eEK~p 294 (294)
.+..+||||+||||||+++++. ..++++ ++.||+|+||++|++|+++||++
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~ 55 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEH 55 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4567899999999999999975 344555 68999999999999999999964
No 49
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=95.99 E-value=0.004 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHhcCCCccccC
Q 022607 272 REREFTKMIGESWTNLSPEERK 293 (294)
Q Consensus 272 ~~~eisK~ige~Wk~Ls~eEK~ 293 (294)
++.||+++||++|++|+++||+
T Consensus 31 ~~~eisk~lg~~Wk~ls~~eK~ 52 (159)
T 2gzk_A 31 RNSEISKQLGYQWKMLTEAEKW 52 (159)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhhHHHhc
Confidence 9999999999999999999985
No 50
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=78.67 E-value=2.5 Score=30.29 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=30.3
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~ 116 (294)
.|...|...|. +.|..||..|+|..- .+.+++..|..+|.+
T Consensus 20 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYGE-------GNWSKILLHYKFNNR---TSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHSCCSSC---CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-------CcHHHHHHHcCcCCC---CHHHHHHHHHHHcCC
Confidence 46677777772 379999999986321 344899999998865
No 51
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=78.17 E-value=1.6 Score=29.45 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=27.8
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~ 116 (294)
.|...|...|- +.|..||..|+ +- ...+.+..|.+||.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~---~R--t~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYGP-------KRWSVIAKHLK---GR--IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTST---TC--CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCc-------ChHHHHHHHcC---CC--CHHHHHHHHHHHcCc
Confidence 45667777662 46999999974 21 234899999999854
No 52
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=77.00 E-value=1.4 Score=26.40 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=9.1
Q ss_pred cccccccccCCCCCCCCCCC
Q 022607 231 RYGRRRRSKRRGDPSYPKPN 250 (294)
Q Consensus 231 r~~~kk~~k~~kDp~~PKrp 250 (294)
||++|+++.=-.|..+||+-
T Consensus 5 rrrrkrkrewdddddppkkr 24 (28)
T 3ukx_C 5 RRRRKRKREWDDDDDPPKKR 24 (28)
T ss_dssp -CCCCCCCCCCCSSSCCSCC
T ss_pred HHHHHhhcccccCCCchhhh
Confidence 33344444334445567654
No 53
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.94 E-value=2.2 Score=30.67 Aligned_cols=39 Identities=10% Similarity=0.331 Sum_probs=28.5
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~ 116 (294)
.|...|...| .+.|..||..|+ + -...+.+..|.++|.+
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~---~--Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLH---R--KSAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHST---T--CCHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhc---C--CCHHHHHHHHHHHcCC
Confidence 4667777777 247999999986 2 1334889999888864
No 54
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=75.23 E-value=2.5 Score=28.37 Aligned_cols=39 Identities=10% Similarity=0.243 Sum_probs=27.7
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~ 116 (294)
.|...|...|- ..|..||..|. +- ...+.+..|.++|.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~---~R--t~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLP---NR--TDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTST---TC--CHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcC---CC--CHHHHHHHHHHHcCc
Confidence 46667776662 47999999974 11 234899999999854
No 55
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=73.47 E-value=3.4 Score=28.82 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=27.3
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~ 115 (294)
.|...|...|= +.|..||..|+- . ...+.+.+|.+||.
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~---R--t~~qcr~r~~~~l~ 55 (60)
T 1x41_A 18 ALLEAVMDCGF-------GNWQDVANQMCT---K--TKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHHTT---S--CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CcHHHHHHHhCC---C--CHHHHHHHHHHHcc
Confidence 35566777662 479999999942 1 23489999999885
No 56
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=71.36 E-value=3.4 Score=28.64 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=27.6
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~ 116 (294)
.|...|...|- +.|..||..|.- - ...+.+..|.++|.+
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 18 QLRALVRQFGQ-------QDWKFLASHFPN--R---TDQQCQYRWLRVLSG 56 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHCSS--S---CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHhCC-------CCHHHHHHHccC--C---CHHHHHHHHHHHcCC
Confidence 45666776662 479999999742 1 234899999998854
No 57
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=68.07 E-value=7.1 Score=26.32 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=28.3
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhh
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLL 114 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L 114 (294)
.|...|...|. +.|..||..|++..- .+.+++..|.++|
T Consensus 12 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYGE-------GNWSKILLHYKFNNR---TSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCc-------CCHHHHHHHcCCCCC---CHHHHHHHHHHHH
Confidence 46677777772 379999999986422 2348898888876
No 58
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.70 E-value=6.9 Score=28.27 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=30.7
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~YE 118 (294)
.|...|...|--. +..+.|..||..|+- - ...+.+.+|.+||.+-.
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~---R--t~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGN---R--TAKQVASQVQKYFIKLT 63 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSS---S--CHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCC---C--CHHHHHHHHHHHHHHHH
Confidence 4556777777211 112589999999852 1 23489999999997643
No 59
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=64.62 E-value=6.7 Score=27.17 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=28.2
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~ 115 (294)
.|...|...|- +.|..||..|+...+ +.+.+.+|.+++.
T Consensus 19 ~L~~~v~~~G~-------~~W~~IA~~~~~~Rt----~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLGL-------GNWADIADYVGNART----KEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTTT-------TCHHHHHHHHCSSCC----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CCHHHHHHHHCCCCC----HHHHHHHHHHHcc
Confidence 56677777772 479999999974322 3488888888764
No 60
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=58.87 E-value=13 Score=26.42 Aligned_cols=40 Identities=10% Similarity=0.314 Sum_probs=28.7
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~ 115 (294)
.|...|...|- ..|..||..+.|..- .+.+++.-|.++|.
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNR---TAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCC---CHHHHHHHHHHHhc
Confidence 56677877772 369999999877532 23488988887764
No 61
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.13 E-value=14 Score=25.94 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=27.7
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~YE~ 119 (294)
.|...|...| ..|..||..+| . ...+.|..|..||.+--.
T Consensus 19 ~L~~~~~~~g--------~~W~~Ia~~~g--R----t~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 19 KLLHLAKLMP--------TQWRTIAPIIG--R----TAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp HHHHHHHHCT--------TCHHHHHHHHS--S----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCHHHHhcccC--c----CHHHHHHHHHHHhChHhc
Confidence 3455566555 27999999444 1 234899999999987644
No 62
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=54.69 E-value=18 Score=25.85 Aligned_cols=41 Identities=5% Similarity=0.141 Sum_probs=29.0
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~YE~ 119 (294)
.|...|...|- .|..||..|.- - ...++|.+|..||.....
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~--R---t~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGS--R---TVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSS--S---CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCC--C---CHHHHHHHHHHHHHHHHh
Confidence 45566666663 79999998742 1 234899999999877544
No 63
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=50.84 E-value=12 Score=28.75 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=27.6
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~ 116 (294)
.|...|...|. ..|..||..|+- - .+.+.+..|.++|.+
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~---R--t~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMIT---R--NPRQCRERWNNYINP 49 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTT---S--CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCC---C--CHHHHHHHHHHHHcc
Confidence 56677887774 479999999852 1 234778888887753
No 64
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=49.74 E-value=13 Score=27.62 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=24.8
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHh
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~ 113 (294)
.|...|...| +.|..||..++- . ...+.+.+|.++
T Consensus 28 ~Ll~~v~~~G--------~~W~~IA~~v~~---R--T~~qcr~r~~~~ 62 (79)
T 2yus_A 28 LLLEALEMYK--------DDWNKVSEHVGS---R--TQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHSS--------SCHHHHHHHHSS---C--CHHHHHHHHTTS
T ss_pred HHHHHHHHhC--------CCHHHHHHHcCC---C--CHHHHHHHHHHh
Confidence 4556777777 479999999973 1 234778877765
No 65
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=44.99 E-value=14 Score=28.03 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=26.6
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~ 115 (294)
.|...|...|. +.|..||..|. +- .+.+.+..|.++|.
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~---~R--t~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLK---GR--IGKQCRERWHNHLN 51 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTST---TC--CHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhc---CC--CHHHHHHHHHhccC
Confidence 46677777774 46999999883 21 23478888888774
No 66
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=36.38 E-value=28 Score=27.42 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=27.6
Q ss_pred hhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022607 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (294)
Q Consensus 65 ~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~ 115 (294)
-.|-..|...|. +.|..||..|.- - .+.+.+..|.++|.
T Consensus 36 ~~L~~~v~~~g~-------~~W~~Ia~~l~~---R--t~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 36 QRVIEHVQKYGP-------KRWSDIAKHLKG---R--IGKQCRERWHNHLN 74 (128)
T ss_dssp HHHHHHHHHTCS-------CCHHHHHHHSSS---C--CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHhcC---C--cHHHHHHHHHHhcc
Confidence 456677777774 469999999842 1 23478888888774
No 67
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=32.71 E-value=45 Score=24.19 Aligned_cols=41 Identities=10% Similarity=0.048 Sum_probs=26.1
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~ 116 (294)
.|-.++..+++-. .++|..||..+| . ....++++|..+...
T Consensus 18 ~fe~al~~~p~~t----~~RW~~IA~~lg--R----t~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 18 QLTRSMVKFPGGT----PGRWEKIAHELG--R----SVTDVTTKAKQLKDS 58 (72)
T ss_dssp HHHHHHHHSCTTC----TTHHHHHHHHHT--S----CHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCC----CcHHHHHHHHhC--C----CHHHHHHHHHHHHHh
Confidence 3445555555321 368999999986 2 234888888777544
No 68
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=30.41 E-value=25 Score=26.15 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=27.5
Q ss_pred hHHhHHHHHhhCCCC---hHHHHHHHHHHhcCCCcccc
Q 022607 258 FAEKHYKLKSLYPNR---EREFTKMIGESWTNLSPEER 292 (294)
Q Consensus 258 ~~e~r~~lk~~~P~~---~~eisK~ige~Wk~Ls~eEK 292 (294)
.+.+|...+.-||+. ..+..+.|.+.|..|++.++
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~ 63 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQK 63 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHH
Confidence 455666777789982 47888999999999998765
No 69
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=28.91 E-value=52 Score=24.79 Aligned_cols=38 Identities=13% Similarity=0.486 Sum_probs=26.5
Q ss_pred hhhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022607 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (294)
Q Consensus 65 ~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~ 115 (294)
..|...|...| ++|..||..| |.- ...+++..|..+|.
T Consensus 65 ~~L~~~~~~~G--------~~W~~Ia~~l--~gR---t~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 65 RIIYQAHKRLG--------NRWAEIAKLL--PGR---TDNAIKNHWNSTMR 102 (105)
T ss_dssp HHHHHHHHHHS--------SCHHHHHTTC--TTC---CHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC--------CCHHHHHHHc--CCC---CHHHHHHHHHHHHh
Confidence 35666777777 3799999876 322 23489999987764
No 70
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.69 E-value=35 Score=25.70 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=27.1
Q ss_pred hHHhHHHHHhhCCCC------hHHHHHHHHHHhcCCCcccc
Q 022607 258 FAEKHYKLKSLYPNR------EREFTKMIGESWTNLSPEER 292 (294)
Q Consensus 258 ~~e~r~~lk~~~P~~------~~eisK~ige~Wk~Ls~eEK 292 (294)
.+.+|...+.-||+. ..+..+.|.+.|..|++.++
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~ 75 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATL 75 (99)
T ss_dssp HHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 455666777778982 26788999999999998765
No 71
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=27.97 E-value=39 Score=23.99 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=26.0
Q ss_pred HHhHHHHHhhCCCC-----hHHHHHHHHHHhcCCCcccc
Q 022607 259 AEKHYKLKSLYPNR-----EREFTKMIGESWTNLSPEER 292 (294)
Q Consensus 259 ~e~r~~lk~~~P~~-----~~eisK~ige~Wk~Ls~eEK 292 (294)
+..|...+.-||+. ..+..+.|.+.|..|++.++
T Consensus 22 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~ 60 (77)
T 1hdj_A 22 RAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60 (77)
T ss_dssp HHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHH
Confidence 45566666778882 36788999999999998765
No 72
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.69 E-value=55 Score=23.85 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=25.7
Q ss_pred hHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022607 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (294)
Q Consensus 67 Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~ 115 (294)
|-.+|...|-- ..++|..||..|+- . ....++.+|..++.
T Consensus 29 L~~al~~~g~~----~~~rW~~IA~~vpG---R--T~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 29 LELALQQYPRG----SSDCWDKIARCVPS---K--SKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHHSCSS----SHHHHHHHGGGCSS---S--CHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCC----CCchHHHHHHHcCC---C--CHHHHHHHHHHHHH
Confidence 44555656521 23689999999952 2 23488888887764
No 73
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=27.62 E-value=74 Score=24.14 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=28.8
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~YE 118 (294)
.|...|...| +.|..||..|. .- ...+++..|..++..-.
T Consensus 63 ~L~~~~~~~G--------~~W~~Ia~~l~--gR---t~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 63 LLDQKYAEYG--------PKWNKISKFLK--NR---SDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HHHHHHHHTC--------SCHHHHHHHHS--SS---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--------cCHHHHHHHCC--CC---CHHHHHHHHHHHHhhHH
Confidence 5667777777 37999999873 22 23489999998876644
No 74
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=27.08 E-value=32 Score=24.26 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=26.7
Q ss_pred hHHhHHHHHhhCCCC---hHHHHHHHHHHhcCCCcccc
Q 022607 258 FAEKHYKLKSLYPNR---EREFTKMIGESWTNLSPEER 292 (294)
Q Consensus 258 ~~e~r~~lk~~~P~~---~~eisK~ige~Wk~Ls~eEK 292 (294)
.+..|...+.-||+. ..+..+.|.+.|..|++.++
T Consensus 26 k~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~ 63 (73)
T 2och_A 26 KKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKK 63 (73)
T ss_dssp HHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHH
Confidence 345666667778982 25888999999999988765
No 75
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=26.52 E-value=54 Score=25.93 Aligned_cols=38 Identities=8% Similarity=0.301 Sum_probs=27.3
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~ 116 (294)
.|...|...|. +|..||..|. .- ...+++..|..+|..
T Consensus 64 ~L~~~~~~~G~--------~W~~Ia~~l~--gR---t~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 64 TIFRNYLKLGS--------KWSVIAKLIP--GR---TDNAIKNRWNSSISK 101 (131)
T ss_dssp HHHHHHHHSCS--------CHHHHTTTST--TC---CHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHCc--------CHHHHHHHcC--CC---CHHHHHHHHHHHHHH
Confidence 46677788874 6999999764 22 234889999888754
No 76
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.99 E-value=61 Score=22.52 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=23.3
Q ss_pred cChhHHHHHHHHHHhhcCCCCCCCeeCC
Q 022607 32 KDPIVFWDTLRRFHFIMGTKFMIPVIGG 59 (294)
Q Consensus 32 ~~~~~Fl~~L~~F~~~rG~~l~~P~i~G 59 (294)
-.++..++.|+.|+.+.|+-+.-|.+.+
T Consensus 29 g~REElvdRLk~Y~~QtGi~lnkP~~~~ 56 (58)
T 2do5_A 29 GNREELVERLQSYTRQTGIVLNRPSGPS 56 (58)
T ss_dssp SCHHHHHHHHHHHHHHHCCCCCCTTCSC
T ss_pred ccHHHHHHHHHHHhhccceeecCCCCCC
Confidence 4689999999999999999887666543
No 77
>3tu3_A EXOU chaperone, SPCU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_A*
Probab=25.65 E-value=10 Score=31.10 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=26.1
Q ss_pred cccccCcceEEEeec---ceeeeeeeccCCCCCC
Q 022607 178 DGKFDCGYLVSVKLG---SETLSGVLYHPDHPGP 208 (294)
Q Consensus 178 dgkfd~gylvtv~~g---se~~~gvly~~~~~~~ 208 (294)
=..||.|||..|++| |..+-||+-+..|..+
T Consensus 57 mER~e~~~L~~V~LG~~P~~~~~GViLQLLQVN~ 90 (161)
T 3tu3_A 57 MERLEGGWLFVVELGLVPSGLPLGVILQLLQVNS 90 (161)
T ss_dssp EEEETTEEEEEEEEEECCTTCCHHHHHHHHHTTS
T ss_pred HHHhcCCeEEEEEecccCCcchHHHHHHHHHhCC
Confidence 348999999999999 8888999888777554
No 78
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=25.55 E-value=33 Score=25.56 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=15.1
Q ss_pred cChhHHHHHHHHHHhhc
Q 022607 32 KDPIVFWDTLRRFHFIM 48 (294)
Q Consensus 32 ~~~~~Fl~~L~~F~~~r 48 (294)
=+-+.||++|+.|+.+|
T Consensus 37 l~TeeFW~DL~gFL~qR 53 (75)
T 2lo0_A 37 VATEAFWDDLQGFLEQR 53 (75)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh
Confidence 47789999999999987
No 79
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=31.21 E-value=15 Score=27.67 Aligned_cols=30 Identities=7% Similarity=0.193 Sum_probs=21.7
Q ss_pred cHHHHHhhhcCCCCCCcHHHHHHHHHHHhhHHHHH
Q 022607 85 KWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (294)
Q Consensus 85 ~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~~YE~ 119 (294)
.|..||..|+- - ...+++.+|..||..+..
T Consensus 37 ~W~~IA~~l~g--R---t~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 37 NWSAIARMVGS--K---TVSQCKNFYFNYKKRQNL 66 (89)
Confidence 69999999742 1 223889999988876543
No 80
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=24.78 E-value=55 Score=25.72 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=25.6
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~ 115 (294)
.|...|...|. .|..||..|+- - .+.+.+..|.++|.
T Consensus 21 ~L~~~v~~~G~--------~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 21 MLKRAVAQHGS--------DWKMIAATFPN--R---NARQCRDRWKNYLA 57 (126)
T ss_dssp HHHHHHHHHTT--------CHHHHHHTCTT--C---CHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCC--------CHHHHHHHcCC--C---CHHHHHHHHhhhcc
Confidence 46667777663 59999998742 1 23478888888874
No 81
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=24.44 E-value=1.3e+02 Score=24.31 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcC-cchh--hhccccHHHHHhhhc
Q 022607 33 DPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRG-GYEK--VVAEKKWREVGAVFK 94 (294)
Q Consensus 33 ~~~~Fl~~L~~F~~~rG~~l~~P~i~Gk~LDL~~Ly~~V~~rG-G~~~--V~~~k~W~eVa~~lg 94 (294)
..+.|+..|+.+++++|..++. =||-.+|..|.+.- +|-. -..-..|..|++.|.
T Consensus 6 ~~~~fi~~Lk~~LK~rGvkV~~-------k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L~ 63 (124)
T 2lpy_A 6 QHERYVEQLKQALKTRGVKVKY-------ADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 63 (124)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCH-------HHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCeeecH-------HHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHHH
Confidence 4679999999999999998742 47888888887432 1111 123458999998883
No 82
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=23.83 E-value=61 Score=25.13 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchh---hhccccHHHHHhhhc
Q 022607 34 PIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEK---VVAEKKWREVGAVFK 94 (294)
Q Consensus 34 ~~~Fl~~L~~F~~~rG~~l~~P~i~Gk~LDL~~Ly~~V~~rGG~~~---V~~~k~W~eVa~~lg 94 (294)
.+.|+..|..++.+||..++ .-||..+|..|.+..=+=- -..-+.|..|++.|.
T Consensus 8 ~q~fi~~lk~lLk~RgIkVk-------k~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~kVG~~L~ 64 (94)
T 1bax_A 8 HERYVEQLKQALKTRGVKVK-------YADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 64 (94)
T ss_pred chHHHHHHHHHHHHcCeeec-------HHHHHHHHHHHHHhCCCcCcCCcccHHHHHHHHHHHH
Confidence 37899999999999999873 2478888888876431111 122357999888875
No 83
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=21.94 E-value=65 Score=26.19 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=26.7
Q ss_pred hhHHHHHhcCcchhhhccccHHHHHhhhcCCCCCCcHHHHHHHHHHHhhH
Q 022607 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (294)
Q Consensus 66 ~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~~tsas~~Lk~~Y~k~L~ 115 (294)
.|...|...|. +.|..||..|. +- ...+.+..|.++|.
T Consensus 68 ~L~~~v~~~g~-------~~W~~Ia~~l~---~R--t~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 68 RVIKLVQKYGP-------KRWSVIAKHLK---GR--IGKQCRERWHNHLN 105 (159)
T ss_dssp HHHHHHHHHCS-------CCHHHHHHTST---TC--CHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCc-------ccHHHHHHHcC---CC--CHHHHHHHHHHHhC
Confidence 56677777774 46999999873 21 23488888888774
No 84
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.80 E-value=34 Score=24.35 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=24.8
Q ss_pred HHhHHHHHhhCCCC-----hHHHHHHHHHHhcCCCcccc
Q 022607 259 AEKHYKLKSLYPNR-----EREFTKMIGESWTNLSPEER 292 (294)
Q Consensus 259 ~e~r~~lk~~~P~~-----~~eisK~ige~Wk~Ls~eEK 292 (294)
+.+|...+.-||+. ..+..+.|.+.|..|++.++
T Consensus 26 ~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 64 (78)
T 2ctp_A 26 KAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64 (78)
T ss_dssp HHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHH
Confidence 44555566667872 26778899999999988765
No 85
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.41 E-value=30 Score=24.69 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=25.3
Q ss_pred hHHhHHHHHhhCCCCh------HHHHHHHHHHhcCCCcccc
Q 022607 258 FAEKHYKLKSLYPNRE------REFTKMIGESWTNLSPEER 292 (294)
Q Consensus 258 ~~e~r~~lk~~~P~~~------~eisK~ige~Wk~Ls~eEK 292 (294)
.+.+|...+.-||+.. .+..+.|.+.|..|++.++
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 65 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 3455666667788721 5788999999999987664
No 86
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=20.21 E-value=56 Score=24.39 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=24.4
Q ss_pred ecchhhhHHHHHhcCcchhhhccccHHHHHhhhcCCCC
Q 022607 61 ELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPT 98 (294)
Q Consensus 61 ~LDL~~Ly~~V~~rGG~~~V~~~k~W~eVa~~lg~p~~ 98 (294)
+.||-..|..|. +.|. ..|+.+|+.|||+..
T Consensus 10 ~~~l~~~~~~ia-----~~lg--~~Wk~Lar~Lg~~~~ 40 (99)
T 1fad_A 10 EAYLQVAFDIVC-----DNVG--RDWKRLARELKVSEA 40 (99)
T ss_dssp HHHHHHHHHHHH-----HHHH--HHHHHHHHHTTCCHH
T ss_pred cccHHHHHHHHH-----HHHh--hhHHHHHHHcCCCHH
Confidence 678888888887 4453 579999999999854
Done!