Query 022608
Match_columns 294
No_of_seqs 192 out of 1919
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 08:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.9 2.4E-20 8.4E-25 175.1 19.3 184 18-228 9-198 (491)
2 2xut_A Proton/peptide symporte 99.8 2.9E-19 9.8E-24 169.2 17.5 188 19-230 9-202 (524)
3 3o7q_A L-fucose-proton symport 99.8 2E-18 7E-23 159.2 21.4 180 18-224 22-227 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.8 3.7E-18 1.3E-22 157.9 14.3 175 21-226 27-206 (451)
5 2gfp_A EMRD, multidrug resista 99.7 5.7E-17 2E-21 146.8 12.1 166 26-221 4-169 (375)
6 1pw4_A Glycerol-3-phosphate tr 99.6 2.9E-14 1E-18 131.6 17.1 178 22-225 252-432 (451)
7 4gc0_A D-xylose-proton symport 99.6 2.4E-14 8.1E-19 134.1 16.4 149 57-216 54-210 (491)
8 3o7q_A L-fucose-proton symport 99.6 9.4E-14 3.2E-18 127.8 17.8 167 21-219 257-425 (438)
9 2cfq_A Lactose permease; trans 99.5 3.2E-13 1.1E-17 124.6 13.3 173 24-225 222-398 (417)
10 4gc0_A D-xylose-proton symport 99.3 3.9E-11 1.3E-15 112.1 17.8 183 23-229 277-465 (491)
11 4aps_A DI-OR tripeptide H+ sym 99.3 5.9E-12 2E-16 117.8 11.5 185 23-228 284-473 (491)
12 2cfq_A Lactose permease; trans 99.3 1.7E-13 5.9E-18 126.4 -1.4 170 22-216 7-177 (417)
13 2gfp_A EMRD, multidrug resista 99.1 4.6E-11 1.6E-15 107.8 2.8 163 22-212 199-362 (375)
14 2xut_A Proton/peptide symporte 98.5 4.3E-08 1.5E-12 92.2 2.1 88 133-226 404-502 (524)
15 4dve_A Biotin transporter BIOY 22.9 1.7E+02 0.0058 23.3 5.9 22 64-85 99-120 (198)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.85 E-value=2.4e-20 Score=175.06 Aligned_cols=184 Identities=21% Similarity=0.397 Sum_probs=162.4
Q ss_pred CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhh-----cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHh-hcchhHH
Q 022608 18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFVADA-YAGRFWT 91 (294)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~ 91 (294)
+++++.++.+....++..+.+|++..+++.|+++. +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 45667888888999999999999999999999988 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhh
Q 022608 92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA 171 (294)
Q Consensus 92 l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 171 (294)
+.++.++..++.+++.++. +.+.++++|++.|+|.+...+...++++|++|+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~--- 142 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR--- 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT---
T ss_pred HHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc---
Confidence 9999999999988877654 677888999999999999999999999999998742
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608 172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP 228 (294)
Q Consensus 172 ~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 228 (294)
+|+..+++++...++|..++|.+++++.+..||++.|++.++..+++++.+++..+
T Consensus 143 -~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 143 -RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 37888999999999999999999999998899999999987777666655554433
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.82 E-value=2.9e-19 Score=169.23 Aligned_cols=188 Identities=31% Similarity=0.546 Sum_probs=155.5
Q ss_pred CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcC------CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHH
Q 022608 19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTI 92 (294)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l 92 (294)
.+++.++.+.+..++.++.+|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345567778889999999999999999999999999 99999999999999999999999999999955999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhh
Q 022608 93 TIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT 172 (294)
Q Consensus 93 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 172 (294)
.++.++..++.+++.++. .+.+.++++|++.|++.+...+...++++|++|+++ +.
T Consensus 89 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~ 144 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KS 144 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TT
T ss_pred HHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hH
Confidence 999998888887776542 156778889999999999999999999999999884 11
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhccce
Q 022608 173 KTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLY 230 (294)
Q Consensus 173 ~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 230 (294)
++...+++++...++|..++|.+++++.+..||++.|++.++..++..+.+++..++.
T Consensus 145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1244555689999999999999999998888999999988877666655555444433
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.81 E-value=2e-18 Score=159.19 Aligned_cols=180 Identities=13% Similarity=0.044 Sum_probs=145.8
Q ss_pred CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHH
Q 022608 18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI 97 (294)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~ 97 (294)
++.++.++.+....++..+........ .+++++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 344555555556666666665554444 4556788999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608 98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY 177 (294)
Q Consensus 98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~ 177 (294)
+..++.+++..... ..+.+.++++|++.|++.+...+...++++|.+|++ +|++.
T Consensus 100 ~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~ 154 (438)
T 3o7q_A 100 LYALGAALFWPAAE-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFR 154 (438)
T ss_dssp HHHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHH
T ss_pred HHHHHHHHHHhccc-------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHH
Confidence 99999888843220 117888999999999999999999999999999998 59999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhee-eccc-------------------------hhhhhhHhHHHHHHHHHHHH
Q 022608 178 FNWYYFVMGAAILVAVTVLVYIQ-DNIG-------------------------WGWGLGIPTFAMFLSIIAFL 224 (294)
Q Consensus 178 ~~~~~~~~~ig~~~~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~ 224 (294)
+++++...++|..+++.+++++. +..+ |++.|++.++...+..+.++
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887 5444 89888776665544444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.77 E-value=3.7e-18 Score=157.85 Aligned_cols=175 Identities=13% Similarity=0.069 Sum_probs=146.8
Q ss_pred cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608 21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ 100 (294)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~ 100 (294)
|+.++.+....++..+..+.+...++.+ .+++ .+..+.+++.+...++..++.+++|+++||+ |||++++++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 4455555556666666655555555544 4567 9999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHH----HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 022608 101 IGMICLTI----SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK 176 (294)
Q Consensus 101 i~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~ 176 (294)
++.+++.+ +. +.+.++++|++.|++.+...+...++++|.+|++ +|++
T Consensus 104 ~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~ 155 (451)
T 1pw4_A 104 AVMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGG 155 (451)
T ss_dssp HHHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHH
T ss_pred HHHHHHHhhhhccc----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhH
Confidence 99988887 55 6678889999999999999999999999999987 6999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHHHHh
Q 022608 177 YFNWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIG 226 (294)
Q Consensus 177 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~ 226 (294)
.+++++...++|..++|.+++++.+..| |++.|++.+++.++..++.++.
T Consensus 156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998888888 9999998887766555444333
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.70 E-value=5.7e-17 Score=146.84 Aligned_cols=166 Identities=10% Similarity=0.079 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 022608 26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC 105 (294)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~ 105 (294)
.+....++..+........++.+ .+++|.+..+.+++.+...++..++.++.|+++||+ |||++++.+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 34455566666666666666554 568999999999999999999999999999999998 9999999999999999988
Q ss_pred HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 022608 106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185 (294)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~ 185 (294)
..... +.+.+++.|++.|++.+...+...+++.|.+|++ +|++.++.++...
T Consensus 82 ~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 133 (375)
T 2gfp_A 82 AVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGI 133 (375)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHH
T ss_pred HHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHH
Confidence 88776 7888999999999999999999999999999987 5999999999999
Q ss_pred HHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608 186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII 221 (294)
Q Consensus 186 ~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 221 (294)
++|..++|.+++++.+..||++.|++.++..++..+
T Consensus 134 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 134 LVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999888999999877766555443
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.59 E-value=2.9e-14 Score=131.57 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=145.8
Q ss_pred chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc-chhHHHHHHHHHHH
Q 022608 22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA-GRFWTITIASIIYQ 100 (294)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~l~~~~~~~~ 100 (294)
+.++.+.+..++..+.++++..+++.|+++.+|++..+++.+.....++..++.++.|+++||+. |||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 56677777888888888899999999999889999999999999999999999999999999932 78888877766655
Q ss_pred -HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608 101 -IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN 179 (294)
Q Consensus 101 -i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~ 179 (294)
++.+++.... ..+.+.+.+..++.|++.+...+....++.|.+|++ .|++.++
T Consensus 332 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~ 385 (451)
T 1pw4_A 332 TIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAG 385 (451)
T ss_dssp HHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHH
T ss_pred HHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh------hhhhHHH
Confidence 4444333221 114556667777888888888888889999999987 6999999
Q ss_pred HHHHHHHH-HHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608 180 WYYFVMGA-AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI 225 (294)
Q Consensus 180 ~~~~~~~i-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 225 (294)
+++...++ |..++|.+.+++.+..||+..|++.+++.+++.+..+.
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999988887777666555444
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.59 E-value=2.4e-14 Score=134.05 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHH
Q 022608 57 LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAI 136 (294)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
....+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+++++........... ..-......+.+.
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~----~~~~~~~a~~~~~ 128 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD----NTVPVYLAGYVPE 128 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS----SSCCGGGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch----hHHHHHHhhhHHH
Confidence 34567888899999999999999999998 999999999999999998887532100000000 0000001237889
Q ss_pred HHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec--------cchhhh
Q 022608 137 LYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN--------IGWGWG 208 (294)
Q Consensus 137 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~--------~g~~~~ 208 (294)
++++|++.|+|.|+..+..+.+++|..|++ +|++..+.++.+..+|..+++.+...+... .+|+..
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYM 202 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHH
Confidence 999999999999999999999999999998 699999999999999999888776554322 245555
Q ss_pred hhHhHHHH
Q 022608 209 LGIPTFAM 216 (294)
Q Consensus 209 f~~~~~~~ 216 (294)
+.+..+..
T Consensus 203 ~~~~~~~~ 210 (491)
T 4gc0_A 203 FASECIPA 210 (491)
T ss_dssp HHTTHHHH
T ss_pred hhhhhhhh
Confidence 55444433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.57 E-value=9.4e-14 Score=127.82 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=133.5
Q ss_pred cchHHHHHHHHHHHHHhHHhhHHHHHHH-hhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608 21 MITMPFIFSNEVCEKLAVVGFNTNMISY-LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY 99 (294)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~ 99 (294)
.+.++...+..++.....+.+..+++.| +++.+|++..+++.+.....++..++.+++|+++||+ |||+++..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3556666667777777788888999999 8888899999999999999999999999999999998 9999999998888
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608 100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN 179 (294)
Q Consensus 100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~ 179 (294)
.++.+++.... +.+. .+..++.|++.+...+...++..|.+|++ ++...+
T Consensus 336 ~~~~~~~~~~~----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 385 (438)
T 3o7q_A 336 MALCLISAFAG----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS 385 (438)
T ss_dssp HHHHHHHHHCC----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred HHHHHHHHHcC----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence 77776665543 3333 33346778889999999999999999864 555555
Q ss_pred HHHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHH
Q 022608 180 WYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLS 219 (294)
Q Consensus 180 ~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~ 219 (294)
+.. ...+|+.++|.+.+++.+..| ++..|.+.+++.++.
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 555 567999999999999999888 888888765544433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.47 E-value=3.2e-13 Score=124.58 Aligned_cols=173 Identities=9% Similarity=0.049 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCC---HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608 24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMP---LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ 100 (294)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~ 100 (294)
.+......++....++....+++.|+++.++.. ....+....+..++..++.++.|+++||+ |||+++..+.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 333333334444444555566888887665532 34456666666677788899999999998 99999988887776
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608 101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 180 (294)
Q Consensus 101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~ 180 (294)
++.+.+.+.. +.+.+.+..++.+++.+...+....+++|.+|++ .|++..++
T Consensus 301 ~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~ 352 (417)
T 2cfq_A 301 VRIIGSSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLV 352 (417)
T ss_dssp HHHHHHTTCC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHH
T ss_pred HHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHH
Confidence 6654443322 3445555556667766666666788999999987 69998888
Q ss_pred -HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608 181 -YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI 225 (294)
Q Consensus 181 -~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 225 (294)
++....+|+.++|.+.|++.+..|++..|.+.+++.+++.++.+.
T Consensus 353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 577888999999999999888888888888777766666555443
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.34 E-value=3.9e-11 Score=112.06 Aligned_cols=183 Identities=14% Similarity=0.066 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608 23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG 102 (294)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~ 102 (294)
..........+..+..+....+..+++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 333334444444443333334444555567788888888888888888999999999999998 9999999998888877
Q ss_pred HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608 103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY 182 (294)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~ 182 (294)
.+.+....... ...............+++.+ ..+....+.+|.+|++ .|+++.++.+
T Consensus 356 ~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~------~R~~~~g~~~ 412 (491)
T 4gc0_A 356 MFSLGTAFYTQ----------------APGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNA------IRGKALAIAV 412 (491)
T ss_dssp HHHHHHHHHTT----------------CCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTT------THHHHHHHHH
T ss_pred HHHHHHHHhcc----------------cchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHh------HHHHHHHHHH
Confidence 76665443111 11112222222222333333 3456678999999999 5999999999
Q ss_pred HHHHHHHHHHHHhhhheeec------cchhhhhhHhHHHHHHHHHHHHHhccc
Q 022608 183 FVMGAAILVAVTVLVYIQDN------IGWGWGLGIPTFAMFLSIIAFLIGYPL 229 (294)
Q Consensus 183 ~~~~ig~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~~ 229 (294)
....+|+.+++.+.+.+.+. .++...|++.+++.+++.++.++..|+
T Consensus 413 ~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999988887765432 344556777666666666655555543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.33 E-value=5.9e-12 Score=117.77 Aligned_cols=185 Identities=9% Similarity=-0.026 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHH-----HHHH
Q 022608 23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT-----IASI 97 (294)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~-----~~~~ 97 (294)
..+.+....++....+......++.|+++.++.+..+.+.+.....+...++.++.|+++||+ |||+... .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 344455555666666677778889999888888877777788888888889999999999998 9886544 6666
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608 98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY 177 (294)
Q Consensus 98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~ 177 (294)
+..++.+++........ .....+.+.+.+..++.|++.+...+....++.|.+|++ .|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~ 423 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA------FNSQM 423 (491)
T ss_dssp HHHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT------CSSSS
T ss_pred HHHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHH
Confidence 66666655544321100 001124455667778889999998999999999999998 49999
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608 178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP 228 (294)
Q Consensus 178 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 228 (294)
.++++...++|..+++.+.+++.+. ++...|.+.+++.++..++.+...+
T Consensus 424 ~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 424 MSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp THHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887654 5666677666666555555554433
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.29 E-value=1.7e-13 Score=126.36 Aligned_cols=170 Identities=6% Similarity=-0.082 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608 22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI 101 (294)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i 101 (294)
|..+.+....++..+.+..+.++++.|+++++|++..+.+++.+...++..++++++|+++||+ |||++++++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 3455555555666666666778899999988999999999999999999999999999999998 999999988876654
Q ss_pred HHHHHHHHhhcCCCCCCCCCCccccccccchhH-HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608 102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQV-AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 180 (294)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~ 180 (294)
+..........+ .. ..+..++++.+++.+...+...+...+..++. .++++..++.
T Consensus 86 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g~ 142 (417)
T 2cfq_A 86 MFAPFFIFIFGP-------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGR 142 (417)
T ss_dssp CHHHHHHHTHHH-------------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHHH
T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchHH
Confidence 322111100000 00 00122333333433333333333333333221 1135666777
Q ss_pred HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHH
Q 022608 181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM 216 (294)
Q Consensus 181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~ 216 (294)
.+...++|..++|.+++++.+ .+|+..|++.++..
T Consensus 143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 766778899999999888765 57888888766543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.05 E-value=4.6e-11 Score=107.81 Aligned_cols=163 Identities=9% Similarity=-0.025 Sum_probs=122.2
Q ss_pred chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH-HH
Q 022608 22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII-YQ 100 (294)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~-~~ 100 (294)
+.++......++.....+.+..+++.|+++.+|++..+++.+.....++..++.++.++++||+ |++ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4556666777777788888888889999888999999999999999999999999999999998 772 2333322 22
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608 101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 180 (294)
Q Consensus 101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~ 180 (294)
++........ . ...+.+.+.+..++.|++.+...+....+..|.+| + +|++..+.
T Consensus 276 ~~~~~~~~~~-~-----------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~------~~g~~~g~ 330 (375)
T 2gfp_A 276 AGLLMWIPDW-F-----------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F------LAGTAGAL 330 (375)
T ss_dssp TSSSSSHHHH-H-----------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H------HHHHHHHH
T ss_pred HHHHHHHHhh-h-----------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c------ccchHHHH
Confidence 2222111110 0 01145556667778899999999999999999998 4 59999999
Q ss_pred HHHHHHHHHHHHHHhhhheeeccchhhhhhHh
Q 022608 181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIP 212 (294)
Q Consensus 181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~ 212 (294)
++...++|+.+++.+.+.+.+..++...+.+.
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999999988887766777666553
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.45 E-value=4.3e-08 Score=92.25 Aligned_cols=88 Identities=10% Similarity=0.069 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeecc--ch-----
Q 022608 133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI--GW----- 205 (294)
Q Consensus 133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~--g~----- 205 (294)
+.+.+.+..++.|++.+...+....++.|.+|++ .||+.+++++...++|+.++|.+.+.+.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA------MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT------CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 4455666778889999999999999999999988 5999999999999999999999999887642 23
Q ss_pred ----hhhhhHhHHHHHHHHHHHHHh
Q 022608 206 ----GWGLGIPTFAMFLSIIAFLIG 226 (294)
Q Consensus 206 ----~~~f~~~~~~~~~~~~~~~~~ 226 (294)
+..|++.+++.+++.+++++.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccccccHHHHHHHHHHHHHHHHHHH
Confidence 222555555555554444433
No 15
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.85 E-value=1.7e+02 Score=23.32 Aligned_cols=22 Identities=14% Similarity=0.156 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHhh
Q 022608 64 LTNFGGTGSLTPLIGAFVADAY 85 (294)
Q Consensus 64 ~~~~~~~~~~~~~~~G~laDr~ 85 (294)
+..+.++..+...+.|+++||.
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~ 120 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKL 120 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHc
Confidence 3566777778889999999996
Done!