BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022609
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
Length = 300
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/276 (19%), Positives = 117/276 (42%), Gaps = 23/276 (8%)
Query: 10 VLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPI-------- 61
+LL KIFA +GS++I A+ +DSL+D+ A ++ N+ + +Y +
Sbjct: 22 LLLLIKIFAWWYTGSVSILAALVDSLVDIGA---------SLTNLLVVRYSLQPADDNHS 72
Query: 62 -GKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVV 120
G + + + + + ++ + + ++ L+ P + + +++ +V
Sbjct: 73 FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILV 132
Query: 121 KLALWIYCKSSGNKIVRAYAKDHYFDXXXXXXXXXXXXXXDSFYWW--IDPAGAILLAVY 178
W+ + + ++ VRA + D S+Y W D A+ + +Y
Sbjct: 133 SFQRWV-VRRTQSQAVRADMLHYQSDVMMNGAILLALGL--SWYGWHRADALFALGIGIY 189
Query: 179 TITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDI 238
+ + E SL+ ++ P E Q++ +V P V +R G F+++ +
Sbjct: 190 ILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHL 249
Query: 239 ELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274
E+ + LPL +AH + + ++ I + +H D
Sbjct: 250 EMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 285
>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
Length = 283
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/276 (19%), Positives = 117/276 (42%), Gaps = 23/276 (8%)
Query: 10 VLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPI-------- 61
+LL KIFA +GS++I A+ +DSL+D+ A ++ N+ + +Y +
Sbjct: 15 LLLLIKIFAWWYTGSVSILAALVDSLVDIGA---------SLTNLLVVRYSLQPADDNHS 65
Query: 62 -GKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVV 120
G + + + + + ++ + + ++ L+ P + + +++ +V
Sbjct: 66 FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILV 125
Query: 121 KLALWIYCKSSGNKIVRAYAKDHYFDXXXXXXXXXXXXXXDSFYWW--IDPAGAILLAVY 178
W+ + + ++ VRA + D S+Y W D A+ + +Y
Sbjct: 126 SFQRWV-VRRTQSQAVRADMLHYQSDVMMNGAILLALGL--SWYGWHRADALFALGIGIY 182
Query: 179 TITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDI 238
+ + E SL+ ++ P E Q++ +V P V +R G F+++ +
Sbjct: 183 ILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHL 242
Query: 239 ELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274
E+ + LPL +AH + + ++ I + +H D
Sbjct: 243 EMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278
>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
Length = 306
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 114/272 (41%), Gaps = 13/272 (4%)
Query: 9 IVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINI---YKYPIGKLR 65
+ L+ K+ A + SGS ++ AS DS D +A I +A++ + + + G +
Sbjct: 23 LTLITIKLLAWLYSGSASMLASLTDSFADTLASII---NFIAIRYAIVPADHDHRYGHGK 79
Query: 66 VQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVV---KL 122
+P+ + +A + F +L E+L+ P + + + +I++ +V K
Sbjct: 80 AEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKR 139
Query: 123 ALWIYCKSSGNKIVRAYAKDHYFDXXXXXXXXXXXXXXDSFYWWIDPAGAILLAVYTITN 182
AL ++ + +V A + + D +WW D A+L+A Y
Sbjct: 140 AL----AATNSTVVEADSLHYKSDLFLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQ 195
Query: 183 WSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPE 242
+ + +L+ + + Q++ + P V + +R G F++ +EL
Sbjct: 196 AFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFHLELDG 255
Query: 243 ELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274
L L EAH+I ++ +++ E +H D
Sbjct: 256 NLSLNEAHSITDTTGLRVKAAFEDAEVIIHQD 287
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 209 YLVIRHPEVKRIDTVRAYTFGVLYF---VEVDIELPEELPLKEAHAIGESLQNKIEKLPE 265
YLVI+ ++ +TFG+ + ++V IE+PEEL + + G LQ E+LP+
Sbjct: 587 YLVIQ---------IKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTG--LQPGEEELPD 635
Query: 266 VERAFVHLD 274
+ V D
Sbjct: 636 IAPPLVTPD 644
>pdb|2ZZT|A Chain A, Crystal Structure Of The Cytosolic Domain Of The Cation
Diffusion Facilitator Family Protein
Length = 107
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 213 RHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNK-IEKLPEVERAFV 271
R P V VR G YF+E DIE+ + +K+AH + ++ + +++ ++E +
Sbjct: 21 RFPNVHNPHRVRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVTI 80
Query: 272 HLD 274
H++
Sbjct: 81 HVE 83
>pdb|3BYP|A Chain A, Mode Of Action Of A Putative Zinc Transporter Czrb
pdb|3BYP|B Chain B, Mode Of Action Of A Putative Zinc Transporter Czrb
pdb|3BYR|A Chain A, Mode Of Action Of A Putative Zinc Transporter Czrb (Zn
Form)
Length = 94
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 194 LVGQSAPPEILQKLTYLVI-----RHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKE 248
L+ + PPE ++++ + R EV + T RA G F+E + + + P++E
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRA---GPRSFLEFHLVVRGDTPVEE 58
Query: 249 AHAIGESLQNKIEKLPEVERAFVHLDYECDHK 280
AH + + L+ + + +A +H++ E + K
Sbjct: 59 AHRLCDELERALAQAFPGLQATIHVEPEGERK 90
>pdb|3FLM|A Chain A, Crystal Structure Of Mend From E.Coli
pdb|3FLM|B Chain B, Crystal Structure Of Mend From E.Coli
pdb|3HWW|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWW|D Chain D, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWX|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|B Chain B, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|I Chain I, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|J Chain J, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|R Chain R, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|S Chain S, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|Z Chain Z, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|1 Chain 1, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
Length = 556
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 25 IAIAASTLDSLLDLMAG---GILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 81
I IA + +LL L A + TH + + + K+ QPV +I+ +
Sbjct: 26 ICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVAN 85
Query: 82 GFQVLIEA---VEKLV---KDEPPK 100
+ LIEA EKL+ D PP+
Sbjct: 86 LYPALIEAGLTGEKLILLTADRPPE 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,148,275
Number of Sequences: 62578
Number of extensions: 305121
Number of successful extensions: 575
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 10
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)