Query 022609
Match_columns 294
No_of_seqs 133 out of 1342
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0053 MMT1 Predicted Co/Zn/C 100.0 3.5E-55 7.7E-60 387.7 35.9 277 2-283 16-297 (304)
2 PRK09509 fieF ferrous iron eff 100.0 9.6E-53 2.1E-57 374.2 36.2 271 2-277 14-288 (299)
3 PRK03557 zinc transporter ZitB 100.0 1.2E-51 2.5E-56 368.5 34.0 272 2-282 22-298 (312)
4 TIGR01297 CDF cation diffusion 100.0 9.3E-50 2E-54 350.6 30.6 261 11-276 2-268 (268)
5 COG1230 CzcD Co/Zn/Cd efflux s 100.0 2.4E-48 5.2E-53 336.5 30.3 268 1-277 24-295 (296)
6 PF01545 Cation_efflux: Cation 100.0 2.8E-48 6.1E-53 344.0 14.3 273 1-278 1-283 (284)
7 KOG1485 Mitochondrial Fe2+ tra 100.0 2.4E-43 5.1E-48 312.8 29.1 285 2-286 118-410 (412)
8 KOG1482 Zn2+ transporter [Inor 100.0 5.5E-36 1.2E-40 261.3 19.2 277 1-285 75-375 (379)
9 KOG1483 Zn2+ transporter ZNT1 100.0 5.3E-36 1.1E-40 262.3 16.3 267 2-277 12-371 (404)
10 KOG1484 Putative Zn2+ transpor 100.0 2.3E-34 5E-39 247.6 24.4 263 3-276 39-347 (354)
11 COG3965 Predicted Co/Zn/Cd cat 100.0 7.3E-30 1.6E-34 211.8 20.6 270 1-276 22-309 (314)
12 KOG2802 Membrane protein HUEL 99.8 1.8E-19 3.8E-24 156.9 16.1 230 2-273 210-502 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.6 5E-07 1.1E-11 80.5 11.0 91 2-100 124-214 (304)
14 PRK09509 fieF ferrous iron eff 98.3 8.7E-06 1.9E-10 72.7 11.2 89 3-99 123-211 (299)
15 TIGR01297 CDF cation diffusion 98.2 6.5E-06 1.4E-10 72.2 9.5 89 3-99 102-190 (268)
16 PRK03557 zinc transporter ZitB 97.6 0.00057 1.2E-08 61.4 10.1 72 22-100 148-219 (312)
17 KOG1485 Mitochondrial Fe2+ tra 96.4 0.017 3.7E-07 52.8 8.2 87 3-97 235-321 (412)
18 PF14535 AMP-binding_C_2: AMP- 95.1 0.28 6.1E-06 35.8 9.1 72 205-277 7-80 (96)
19 PF01545 Cation_efflux: Cation 94.4 0.048 1E-06 48.0 4.0 87 6-99 114-203 (284)
20 COG1230 CzcD Co/Zn/Cd efflux s 92.7 1.7 3.6E-05 38.6 10.7 70 24-100 152-221 (296)
21 PF03780 Asp23: Asp23 family; 92.7 1.4 3.1E-05 32.6 9.0 53 222-274 49-105 (108)
22 PF09580 Spore_YhcN_YlaJ: Spor 90.3 2.6 5.7E-05 34.3 8.9 71 200-277 73-144 (177)
23 TIGR02898 spore_YhcN_YlaJ spor 89.2 5 0.00011 32.2 9.4 71 202-277 54-125 (158)
24 TIGR03406 FeS_long_SufT probab 87.4 7.4 0.00016 31.8 9.5 73 201-276 72-156 (174)
25 COG4858 Uncharacterized membra 87.2 15 0.00033 30.1 13.0 102 79-184 103-210 (226)
26 PF01883 DUF59: Domain of unkn 86.5 3.6 7.9E-05 28.0 6.3 64 205-271 2-72 (72)
27 PRK05783 hypothetical protein; 86.0 7.9 0.00017 27.5 7.8 62 205-275 21-83 (84)
28 TIGR02945 SUF_assoc FeS assemb 84.6 12 0.00026 27.2 8.7 69 204-275 3-79 (99)
29 cd04870 ACT_PSP_1 CT domains f 83.5 12 0.00025 25.6 8.2 57 201-262 10-66 (75)
30 PF01037 AsnC_trans_reg: AsnC 81.3 9 0.00019 25.7 6.6 61 202-273 10-70 (74)
31 KOG1484 Putative Zn2+ transpor 80.4 26 0.00056 31.6 10.4 83 114-196 41-131 (354)
32 PF02700 PurS: Phosphoribosylf 80.3 18 0.00038 25.5 8.3 63 203-274 17-79 (80)
33 PF10934 DUF2634: Protein of u 76.9 12 0.00026 28.1 6.5 49 192-240 54-107 (112)
34 cd04900 ACT_UUR-like_1 ACT dom 76.9 20 0.00044 24.2 7.4 59 201-261 12-70 (73)
35 PF13291 ACT_4: ACT domain; PD 76.4 22 0.00048 24.4 8.5 61 201-270 17-79 (80)
36 COG4956 Integral membrane prot 73.3 69 0.0015 28.7 15.1 75 124-198 62-141 (356)
37 TIGR00439 ftsX putative protei 72.8 37 0.00081 30.4 9.7 71 196-269 73-161 (309)
38 PF04455 Saccharop_dh_N: LOR/S 72.8 28 0.00062 25.7 7.3 73 199-274 13-86 (103)
39 COG1828 PurS Phosphoribosylfor 71.8 33 0.00071 24.3 8.1 62 205-275 20-81 (83)
40 cd02411 archeal_30S_S3_KH K ho 68.5 24 0.00051 25.0 6.1 71 204-275 12-82 (85)
41 PRK02047 hypothetical protein; 65.2 44 0.00096 24.0 7.0 62 200-268 26-89 (91)
42 PF04972 BON: BON domain; Int 64.4 21 0.00045 23.3 4.9 57 205-271 2-58 (64)
43 PRK00907 hypothetical protein; 64.1 51 0.0011 23.8 7.0 67 194-268 22-90 (92)
44 PRK11589 gcvR glycine cleavage 64.1 62 0.0014 26.8 8.6 68 201-277 106-179 (190)
45 PRK10334 mechanosensitive chan 64.0 88 0.0019 27.7 10.1 79 201-280 199-284 (286)
46 PRK11023 outer membrane lipopr 63.2 20 0.00043 29.7 5.5 70 194-276 81-152 (191)
47 PF09877 DUF2104: Predicted me 62.9 43 0.00093 24.4 6.3 20 62-81 78-97 (99)
48 PF13710 ACT_5: ACT domain; PD 62.7 38 0.00083 22.4 5.8 61 201-269 3-63 (63)
49 cd00491 4Oxalocrotonate_Tautom 61.4 31 0.00067 21.9 5.2 45 236-280 3-49 (58)
50 cd04888 ACT_PheB-BS C-terminal 61.2 46 0.001 22.2 7.9 63 201-271 11-74 (76)
51 PRK11169 leucine-responsive tr 59.8 85 0.0019 25.1 8.6 65 200-275 86-150 (164)
52 PRK14634 hypothetical protein; 59.7 84 0.0018 25.1 8.3 58 203-262 9-68 (155)
53 PRK00092 ribosome maturation p 58.7 69 0.0015 25.4 7.7 58 203-262 9-66 (154)
54 PF00873 ACR_tran: AcrB/AcrD/A 54.9 32 0.0007 36.2 6.6 44 231-274 558-601 (1021)
55 PRK02289 4-oxalocrotonate taut 54.9 25 0.00055 22.9 3.9 41 236-276 4-46 (60)
56 PRK00341 hypothetical protein; 54.9 77 0.0017 22.8 6.7 61 200-268 27-89 (91)
57 PRK14647 hypothetical protein; 54.5 1.1E+02 0.0024 24.5 8.9 57 204-262 11-67 (159)
58 PRK02220 4-oxalocrotonate taut 54.4 34 0.00073 22.1 4.5 42 236-277 4-47 (61)
59 PRK15385 magnesium transport p 53.9 1.4E+02 0.003 25.5 11.8 65 204-275 158-224 (225)
60 PF03147 FDX-ACB: Ferredoxin-f 53.9 79 0.0017 22.6 6.9 62 205-266 21-91 (94)
61 PRK14646 hypothetical protein; 53.5 1.1E+02 0.0023 24.5 7.9 56 205-262 11-68 (155)
62 PRK11179 DNA-binding transcrip 52.5 69 0.0015 25.2 6.8 64 201-275 80-143 (153)
63 PRK11670 antiporter inner memb 51.9 1.1E+02 0.0023 28.2 8.9 67 204-275 14-89 (369)
64 cd02412 30S_S3_KH K homology R 50.6 62 0.0013 24.0 5.9 70 201-275 36-105 (109)
65 PRK14637 hypothetical protein; 50.3 1.3E+02 0.0028 23.9 9.9 70 203-274 10-79 (151)
66 cd04899 ACT_ACR-UUR-like_2 C-t 50.1 70 0.0015 20.9 7.4 57 201-261 11-67 (70)
67 COG4035 Predicted membrane pro 49.9 17 0.00037 26.1 2.5 20 62-81 85-104 (108)
68 COG2151 PaaD Predicted metal-s 49.7 1.1E+02 0.0024 23.0 8.8 73 200-275 10-91 (111)
69 PF02790 COX2_TM: Cytochrome C 49.4 85 0.0018 21.6 6.4 33 54-86 50-82 (84)
70 PRK00745 4-oxalocrotonate taut 49.4 47 0.001 21.5 4.6 44 236-279 4-49 (62)
71 PF13740 ACT_6: ACT domain; PD 49.1 83 0.0018 21.4 9.7 57 200-262 12-68 (76)
72 PRK14640 hypothetical protein; 48.5 1.4E+02 0.003 23.8 8.6 58 203-262 8-65 (152)
73 PRK01964 4-oxalocrotonate taut 47.4 46 0.001 21.8 4.3 42 236-277 4-47 (64)
74 PRK04998 hypothetical protein; 47.0 1E+02 0.0022 21.9 6.4 58 200-267 25-85 (88)
75 TIGR00013 taut 4-oxalocrotonat 46.5 58 0.0012 21.1 4.7 42 236-277 3-47 (63)
76 TIGR02159 PA_CoA_Oxy4 phenylac 45.6 1.1E+02 0.0023 24.3 6.7 42 229-274 24-65 (146)
77 TIGR00489 aEF-1_beta translati 44.6 1.2E+02 0.0025 21.8 6.7 63 204-272 19-83 (88)
78 COG2098 Uncharacterized protei 44.5 46 0.001 24.8 4.1 32 245-276 35-66 (116)
79 PRK04191 rps3p 30S ribosomal p 44.2 1.1E+02 0.0024 25.7 7.0 71 204-275 14-84 (207)
80 cd04869 ACT_GcvR_2 ACT domains 44.1 99 0.0022 20.9 8.0 58 200-262 9-72 (81)
81 cd04925 ACT_ACR_2 ACT domain-c 43.2 1E+02 0.0022 20.8 8.5 59 200-260 10-72 (74)
82 PRK09577 multidrug efflux prot 42.7 2.9E+02 0.0063 29.3 11.3 63 200-264 54-118 (1032)
83 PF07444 Ycf66_N: Ycf66 protei 42.6 1.2E+02 0.0027 21.5 9.5 44 143-186 34-80 (84)
84 TIGR03221 muco_delta muconolac 42.4 66 0.0014 23.2 4.5 29 232-260 2-30 (90)
85 cd02413 40S_S3_KH K homology R 42.2 86 0.0019 22.0 5.2 55 206-260 6-63 (81)
86 PRK14638 hypothetical protein; 41.7 1.8E+02 0.0038 23.1 8.3 56 205-262 12-68 (150)
87 COG1279 Lysine efflux permease 41.5 2.1E+02 0.0046 23.9 9.4 61 133-193 34-94 (202)
88 PRK05974 phosphoribosylformylg 41.5 1.2E+02 0.0026 21.1 7.0 64 203-275 17-80 (80)
89 PRK15031 5-carboxymethyl-2-hyd 40.5 1.7E+02 0.0037 22.5 8.5 76 200-276 18-110 (126)
90 PRK10597 DNA damage-inducible 40.5 1.2E+02 0.0026 21.4 5.6 41 234-276 3-45 (81)
91 PF11712 Vma12: Endoplasmic re 39.5 1E+02 0.0022 24.0 5.8 18 3-20 79-96 (142)
92 PRK10503 multidrug efflux syst 39.3 2.6E+02 0.0056 29.8 10.3 56 204-264 73-129 (1040)
93 PRK14630 hypothetical protein; 39.0 1.9E+02 0.0041 22.7 8.2 60 201-262 8-67 (143)
94 COG4669 EscJ Type III secretor 38.8 2.6E+02 0.0056 24.1 9.2 73 204-280 111-194 (246)
95 TIGR02155 PA_CoA_ligase phenyl 38.0 2.6E+02 0.0056 25.8 9.3 70 205-275 331-404 (422)
96 PF11381 DUF3185: Protein of u 37.9 1.2E+02 0.0026 20.0 5.5 48 70-122 6-56 (59)
97 PRK11152 ilvM acetolactate syn 37.3 1.4E+02 0.003 20.7 6.9 63 200-271 13-75 (76)
98 PRK09579 multidrug efflux prot 37.2 81 0.0018 33.4 6.3 72 201-273 622-694 (1017)
99 PF00873 ACR_tran: AcrB/AcrD/A 37.0 52 0.0011 34.7 4.9 71 201-272 634-708 (1021)
100 COG1302 Uncharacterized protei 36.9 2E+02 0.0043 22.3 9.6 82 189-275 28-113 (131)
101 PF02426 MIase: Muconolactone 36.6 90 0.002 22.5 4.6 29 232-260 3-31 (91)
102 KOG1482 Zn2+ transporter [Inor 35.9 2.2E+02 0.0048 26.2 7.9 68 129-196 94-169 (379)
103 PF02576 DUF150: Uncharacteris 35.6 1.9E+02 0.0041 22.4 6.8 65 208-274 3-68 (141)
104 COG0841 AcrB Cation/multidrug 35.3 3.5E+02 0.0077 28.7 10.4 40 200-239 55-95 (1009)
105 cd04887 ACT_MalLac-Enz ACT_Mal 35.3 1.3E+02 0.0029 19.8 7.4 58 201-267 10-68 (74)
106 TIGR00915 2A0602 The (Largely 35.1 4E+02 0.0087 28.4 11.0 65 200-265 54-120 (1044)
107 PF00368 HMG-CoA_red: Hydroxym 34.3 3.8E+02 0.0083 24.8 9.7 62 204-265 125-187 (373)
108 PF03927 NapD: NapD protein; 34.3 71 0.0015 22.2 3.7 63 200-275 13-75 (79)
109 PRK14641 hypothetical protein; 34.2 2.6E+02 0.0056 22.8 8.3 44 218-261 24-67 (173)
110 PRK09579 multidrug efflux prot 34.0 3.5E+02 0.0075 28.7 10.3 64 200-265 56-121 (1017)
111 PRK10555 aminoglycoside/multid 33.9 3.2E+02 0.0069 29.1 10.0 63 200-264 54-119 (1037)
112 PF00403 HMA: Heavy-metal-asso 33.8 44 0.00096 21.5 2.5 24 251-274 11-34 (62)
113 TIGR00915 2A0602 The (Largely 33.8 1.2E+02 0.0026 32.2 6.9 71 202-272 646-718 (1044)
114 PRK14633 hypothetical protein; 33.7 2.4E+02 0.0052 22.3 8.6 58 202-262 5-62 (150)
115 PF04456 DUF503: Protein of un 33.6 74 0.0016 22.9 3.8 42 233-276 4-45 (90)
116 cd04927 ACT_ACR-like_2 Second 33.5 1.6E+02 0.0034 20.1 8.3 58 201-260 11-71 (76)
117 PRK11465 putative mechanosensi 33.4 5.2E+02 0.011 26.4 10.8 56 222-277 669-726 (741)
118 KOG4496 Predicted coiled-coil 33.3 70 0.0015 25.2 3.8 51 244-294 55-106 (194)
119 PRK15348 type III secretion sy 33.2 3.3E+02 0.0071 23.7 9.3 71 205-277 110-188 (249)
120 COG3518 Predicted component of 33.2 55 0.0012 26.2 3.3 36 245-280 82-118 (157)
121 PRK14645 hypothetical protein; 33.1 2.5E+02 0.0055 22.3 8.4 58 203-262 11-70 (154)
122 PRK15127 multidrug efflux syst 32.6 3.6E+02 0.0079 28.7 10.2 64 199-264 53-119 (1049)
123 PF03755 YicC_N: YicC-like fam 32.5 68 0.0015 25.6 3.9 45 230-277 27-71 (159)
124 cd04928 ACT_TyrKc Uncharacteri 32.4 1.6E+02 0.0035 19.9 7.4 56 201-260 12-67 (68)
125 cd04873 ACT_UUR-ACR-like ACT d 32.3 1.4E+02 0.003 19.2 7.6 57 201-261 11-67 (70)
126 PRK00435 ef1B elongation facto 32.1 1.9E+02 0.0041 20.7 6.6 63 204-272 19-83 (88)
127 PF02038 ATP1G1_PLM_MAT8: ATP1 31.5 62 0.0013 20.5 2.6 29 57-86 5-33 (50)
128 TIGR03319 YmdA_YtgF conserved 31.5 1.6E+02 0.0035 28.5 6.8 63 204-272 439-504 (514)
129 COG3696 Putative silver efflux 31.4 48 0.001 34.1 3.3 71 201-272 633-707 (1027)
130 cd04926 ACT_ACR_4 C-terminal 31.2 1.6E+02 0.0036 19.6 7.1 56 201-260 12-67 (72)
131 cd04875 ACT_F4HF-DF N-terminal 30.9 1.6E+02 0.0036 19.6 7.7 56 200-257 9-67 (74)
132 cd04872 ACT_1ZPV ACT domain pr 30.9 1.9E+02 0.004 20.2 5.6 56 200-260 11-67 (88)
133 PRK00106 hypothetical protein; 30.9 80 0.0017 30.7 4.6 62 204-272 460-525 (535)
134 PRK14639 hypothetical protein; 30.7 2.6E+02 0.0057 21.8 7.6 64 209-274 5-69 (140)
135 PF12984 DUF3868: Domain of un 30.3 1.2E+02 0.0026 22.8 4.7 28 215-242 27-54 (115)
136 PLN02788 phenylalanine-tRNA sy 30.0 2.1E+02 0.0046 26.7 7.1 63 204-266 330-399 (402)
137 PRK10614 multidrug efflux syst 30.0 4.4E+02 0.0096 28.0 10.3 56 204-264 64-120 (1025)
138 PRK10503 multidrug efflux syst 29.7 1.3E+02 0.0028 32.0 6.3 44 231-274 567-610 (1040)
139 PRK11198 LysM domain/BON super 29.6 2.8E+02 0.006 21.8 7.0 79 185-274 5-87 (147)
140 KOG0144 RNA-binding protein CU 29.6 1.4E+02 0.003 28.1 5.6 84 191-283 35-121 (510)
141 PF12327 FtsZ_C: FtsZ family, 29.3 1E+02 0.0023 22.2 4.0 70 201-280 14-84 (95)
142 cd04901 ACT_3PGDH C-terminal A 29.1 79 0.0017 20.5 3.2 59 201-271 10-68 (69)
143 PRK14632 hypothetical protein; 29.0 3.2E+02 0.0068 22.2 8.5 56 204-262 11-66 (172)
144 PRK12704 phosphodiesterase; Pr 28.3 97 0.0021 30.1 4.7 63 204-273 445-511 (520)
145 PF13193 AMP-binding_C: AMP-bi 28.2 1.8E+02 0.004 19.2 7.2 50 206-262 1-50 (73)
146 PF06570 DUF1129: Protein of u 27.7 3.6E+02 0.0077 22.4 12.0 17 116-132 186-202 (206)
147 TIGR00268 conserved hypothetic 27.2 1.9E+02 0.0041 24.9 6.0 63 204-276 187-249 (252)
148 PF11654 DUF2665: Protein of u 27.1 70 0.0015 20.0 2.3 18 164-181 4-21 (47)
149 PRK09577 multidrug efflux prot 27.1 1.4E+02 0.003 31.7 6.0 39 232-270 567-605 (1032)
150 COG3232 HpaF 5-carboxymethyl-2 26.9 1.9E+02 0.0041 22.1 5.0 88 188-276 6-108 (127)
151 cd00643 HMG-CoA_reductase_clas 26.9 5.3E+02 0.012 24.2 9.9 63 203-265 150-213 (403)
152 KOG1483 Zn2+ transporter ZNT1 26.5 4.6E+02 0.0099 24.4 8.3 65 132-196 33-105 (404)
153 PRK06937 type III secretion sy 26.5 3.7E+02 0.0081 22.2 8.9 57 202-278 115-171 (204)
154 PF04219 DUF413: Protein of un 26.5 33 0.00072 24.9 0.9 41 55-101 4-44 (93)
155 PF06570 DUF1129: Protein of u 26.4 3.8E+02 0.0082 22.3 14.1 29 71-99 80-108 (206)
156 COG2177 FtsX Cell division pro 26.3 2.1E+02 0.0046 25.5 6.2 28 195-222 65-92 (297)
157 cd04877 ACT_TyrR N-terminal AC 25.9 2.1E+02 0.0045 19.1 7.4 58 201-270 11-68 (74)
158 PRK11023 outer membrane lipopr 25.8 3.8E+02 0.0082 22.0 7.8 66 199-275 124-189 (191)
159 TIGR02610 PHA_gran_rgn putativ 25.7 1.1E+02 0.0025 21.9 3.6 33 234-266 2-34 (91)
160 PRK14128 iraD DNA replication/ 25.4 1.7E+02 0.0037 19.8 4.2 31 247-277 7-38 (69)
161 PRK00194 hypothetical protein; 25.2 2.4E+02 0.0052 19.6 5.7 54 200-258 13-67 (90)
162 COG4846 CcdC Membrane protein 25.1 3.3E+02 0.0071 21.1 6.5 53 78-134 98-152 (163)
163 COG1244 Predicted Fe-S oxidore 24.9 2.2E+02 0.0047 25.9 5.9 69 199-279 80-149 (358)
164 PRK10555 aminoglycoside/multid 24.9 3.5E+02 0.0077 28.7 8.5 30 243-272 148-178 (1037)
165 PTZ00397 macrophage migration 24.7 2.9E+02 0.0063 20.4 7.9 78 201-278 18-105 (116)
166 PF01361 Tautomerase: Tautomer 24.7 1.3E+02 0.0029 19.1 3.6 41 236-276 3-45 (60)
167 COG5546 Small integral membran 24.7 2E+02 0.0043 19.9 4.3 46 5-56 16-62 (80)
168 TIGR02544 III_secr_YscJ type I 24.5 4.1E+02 0.0088 22.0 8.6 72 203-276 108-188 (193)
169 COG2177 FtsX Cell division pro 24.3 1.5E+02 0.0033 26.5 4.9 33 234-272 61-93 (297)
170 COG1550 Uncharacterized protei 24.3 2E+02 0.0043 20.9 4.5 35 233-267 5-39 (95)
171 PRK11026 ftsX cell division AB 24.1 4E+02 0.0087 23.8 7.6 27 196-222 73-99 (309)
172 COG4851 CamS Protein involved 23.6 1.5E+02 0.0033 26.4 4.6 38 237-274 194-231 (382)
173 COG0841 AcrB Cation/multidrug 23.3 4.3E+02 0.0093 28.1 8.6 68 203-272 107-176 (1009)
174 PF14552 Tautomerase_2: Tautom 22.8 1.2E+02 0.0026 21.3 3.3 45 232-276 28-74 (82)
175 PHA02568 J baseplate assembly 22.3 3.4E+02 0.0073 24.3 6.7 49 198-247 180-230 (300)
176 PF09650 PHA_gran_rgn: Putativ 22.3 1.3E+02 0.0029 21.3 3.4 31 236-266 1-31 (87)
177 cd04886 ACT_ThrD-II-like C-ter 22.2 2.2E+02 0.0048 18.1 7.0 52 201-257 9-65 (73)
178 COG0779 Uncharacterized protei 22.2 4.1E+02 0.0089 21.2 10.0 71 202-274 9-80 (153)
179 PRK14635 hypothetical protein; 22.0 4.2E+02 0.0091 21.2 10.1 73 199-274 3-80 (162)
180 PF07876 Dabb: Stress responsi 21.9 2.9E+02 0.0062 19.3 6.3 40 236-275 5-44 (97)
181 TIGR00439 ftsX putative protei 21.6 1.7E+02 0.0038 26.1 4.8 27 241-271 73-99 (309)
182 PF06635 NolV: Nodulation prot 21.5 5E+02 0.011 21.9 7.3 75 185-280 97-172 (207)
183 COG3696 Putative silver efflux 21.4 2.2E+02 0.0047 29.7 5.7 43 235-277 561-603 (1027)
184 KOG3320 40S ribosomal protein 21.2 4.7E+02 0.01 21.5 6.9 79 199-280 15-108 (192)
185 TIGR00914 2A0601 heavy metal e 21.1 6.2E+02 0.014 27.0 9.5 56 204-264 66-122 (1051)
186 PRK10614 multidrug efflux syst 20.9 2.2E+02 0.0047 30.3 6.0 43 231-273 557-599 (1025)
187 MTH00140 COX2 cytochrome c oxi 20.8 5.2E+02 0.011 21.9 7.9 29 57-85 52-80 (228)
188 TIGR00469 pheS_mito phenylalan 20.7 4.9E+02 0.011 24.9 7.6 63 204-266 389-458 (460)
189 PRK14636 hypothetical protein; 20.7 4.7E+02 0.01 21.3 8.6 59 202-262 6-66 (176)
190 TIGR00119 acolac_sm acetolacta 20.7 2.9E+02 0.0063 22.1 5.4 72 200-273 52-123 (157)
191 PRK11895 ilvH acetolactate syn 20.5 2.6E+02 0.0056 22.5 5.1 61 199-260 52-112 (161)
192 PF05915 DUF872: Eukaryotic pr 20.4 3.8E+02 0.0083 20.2 5.7 28 69-96 41-68 (115)
193 PRK11895 ilvH acetolactate syn 20.3 4.6E+02 0.01 21.0 7.6 62 201-270 13-74 (161)
194 COG3978 Acetolactate synthase 20.1 3.2E+02 0.007 19.2 6.9 66 197-271 10-75 (86)
No 1
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-55 Score=387.68 Aligned_cols=277 Identities=26% Similarity=0.410 Sum_probs=257.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHH
Q 022609 2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 81 (294)
Q Consensus 2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 81 (294)
++|++.|+++++.|+++|+.+||.||+|||+||++|++++++.+++.+.++||+|++|||||+|+|++++++.++++++.
T Consensus 16 ~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~~~~~i~~~ 95 (304)
T COG0053 16 LISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASLIVSILIFAA 95 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH----hcchhhhhhhhhhhhhHHHHHHHHHHH
Q 022609 82 GFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTNVVGLVAA 157 (294)
Q Consensus 82 ~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~l~a~~~~~~~d~~~s~~~~i~~ 157 (294)
|+.++++++.++++|.+.+ ...+++++++++.+++.+++++.++ .+++.+++++.|.++|.+++++++++.
T Consensus 96 g~~i~~~a~~~~~~~~~~~-----~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl 170 (304)
T COG0053 96 GFEILLEAIKRLISPQPVE-----PPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGL 170 (304)
T ss_pred HHHHHHHHHHHHhCCCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999977764 3578899999999999999998865 458899999999999999999888776
Q ss_pred HHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEE
Q 022609 158 VLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVD 237 (294)
Q Consensus 158 ~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~ 237 (294)
.....+|+|+||++++++++++++.+++++|++...|+|+.+|++..+++++.+.+.|+|.++|++|.|+.|+.+++++|
T Consensus 171 ~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~V~~v~~lr~R~~G~~~~id~~ 250 (304)
T COG0053 171 LGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRKSGSRIFIDVH 250 (304)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCcceeeecceeeeeCCeEEEEEE
Confidence 63334589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHHHHHHHHHhc-CCCcceEEEEeeccCCCCCcc
Q 022609 238 IELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLDYECDHKPEH 283 (294)
Q Consensus 238 i~v~~~~~v~~~~~i~~~i~~~l~~-~~~v~~v~i~~ep~~~~~~~~ 283 (294)
+++|+++|++|+|++++++++++++ .+.+.+++||+||......+.
T Consensus 251 i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~~ 297 (304)
T COG0053 251 IEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEEK 297 (304)
T ss_pred EEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCccccccc
Confidence 9999999999999999999999986 444999999999986555443
No 2
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=9.6e-53 Score=374.15 Aligned_cols=271 Identities=20% Similarity=0.216 Sum_probs=247.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHH
Q 022609 2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 81 (294)
Q Consensus 2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 81 (294)
++++++|++++++|+++|+.+||.++++||+||+.|+++.++++++.+.++||+|++|||||+|+|+++++++++++++.
T Consensus 14 ~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~ 93 (299)
T PRK09509 14 IAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGS 93 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH----HhcchhhhhhhhhhhhhHHHHHHHHHHH
Q 022609 82 GFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCK----SSGNKIVRAYAKDHYFDVVTNVVGLVAA 157 (294)
Q Consensus 82 ~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~l~a~~~~~~~d~~~s~~~~i~~ 157 (294)
++++++++++++++|++.+ ...++++++++++++|.+++++++ +.+|+++++++.|+++|.+++.+++++.
T Consensus 94 ~~~~~~esi~~l~~~~~~~-----~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~ 168 (299)
T PRK09509 94 ALFLFLTGIQHLISPTPMN-----DPGVGIIVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLAL 168 (299)
T ss_pred HHHHHHHHHHHHcCCCCCC-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987753 235566778888888987766554 4568899999999999999998666655
Q ss_pred HHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEE
Q 022609 158 VLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVD 237 (294)
Q Consensus 158 ~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~ 237 (294)
.+..+.|+|+||++++++++++++.+++++|++...|+|+++|++..++|++.+++.|+|.++|++|+|+.|++.++++|
T Consensus 169 ~~~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~~~~v~~v~~l~~~~~G~~~~v~v~ 248 (299)
T PRK09509 169 GLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQLH 248 (299)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCcCceeeeeEeeCCeEEEEEE
Confidence 55444588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccC
Q 022609 238 IELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 277 (294)
Q Consensus 238 i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~ 277 (294)
++++++++++|+|++++++|+++++.++..+++||+||.+
T Consensus 249 i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~~v~ihveP~~ 288 (299)
T PRK09509 249 LEMEDNLPLVQAHMIADQVEQALLRRFPGSDVIIHQDPCS 288 (299)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 9999999999999999999999976444567999999964
No 3
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=1.2e-51 Score=368.48 Aligned_cols=272 Identities=17% Similarity=0.192 Sum_probs=243.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHH
Q 022609 2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 81 (294)
Q Consensus 2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 81 (294)
++++++|++++++|+++|+.+||.|+++||+||+.|++++++++++.+.++||+|++|||||+|+|+++++++++++++.
T Consensus 22 ~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~l~~~ 101 (312)
T PRK03557 22 LYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVI 101 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH---hcchhhhhhhhhhhhhHHHHHHHHHHHH
Q 022609 82 GFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS---SGNKIVRAYAKDHYFDVVTNVVGLVAAV 158 (294)
Q Consensus 82 ~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~l~a~~~~~~~d~~~s~~~~i~~~ 158 (294)
+++++++|++++++|.+.+ ..++++++++++++|.+++++.++ .++.++++++.|++.|.+++++++++++
T Consensus 102 ~~~i~~eai~~l~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~ 175 (312)
T PRK03557 102 TILIVWEAIERFRTPRPVA------GGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGAIIAAL 175 (312)
T ss_pred HHHHHHHHHHHHcCCcccc------chHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876542 244666777888888877766544 3467899999999999999998888776
Q ss_pred Hhhh-hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH-HcCCCcceeeEEEEEEeCCeEEEEE
Q 022609 159 LGDS-FYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLV-IRHPEVKRIDTVRAYTFGVLYFVEV 236 (294)
Q Consensus 159 ~~~~-~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i-~~~~~V~~v~~~~~~~~g~~~~v~~ 236 (294)
+..+ .|+|+||++++++++++++.+++++|++...|+|..||++..+++++.+ ++.|+|.++|++|+|+.|+++++++
T Consensus 176 ~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G~~~~v~~ 255 (312)
T PRK03557 176 IIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVGEKPVMTL 255 (312)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeCCeEEEEE
Confidence 6554 3889999999999999999999999999999999888777789998887 5689999999999999999999999
Q ss_pred EEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccCCCCCc
Q 022609 237 DIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPE 282 (294)
Q Consensus 237 ~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~~~~~~ 282 (294)
|++++++. +.+++++++++++++.+++.++|||+||++++..+
T Consensus 256 hv~v~~~~---~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~~~ 298 (312)
T PRK03557 256 HVQVIPPH---DHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGPD 298 (312)
T ss_pred EEEECCCC---CHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCCcc
Confidence 99999884 67899999999998777899999999998655433
No 4
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=9.3e-50 Score=350.64 Aligned_cols=261 Identities=23% Similarity=0.352 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHHH
Q 022609 11 LLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAV 90 (294)
Q Consensus 11 ~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~ai 90 (294)
++++|+++|+.+||.++++||+|++.|+++.++++++.+.++||+|++|||||+|+|+++++++++++++.++.++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH----hcchhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhc
Q 022609 91 EKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWW 166 (294)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~l~a~~~~~~~d~~~s~~~~i~~~~~~~~~~~ 166 (294)
+++++|++.+ ...+++.++++++++|.++++++++ .+|+.+++++.|++.|.+++++++++..+..++++|
T Consensus 82 ~~l~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~~~~ 156 (268)
T TIGR01297 82 ERLINPEPEI-----DGGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWHW 156 (268)
T ss_pred HHHhCCCCcc-----cchhHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976442 2456777888999999998888765 347889999999999999999888777666656889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCC
Q 022609 167 IDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELP 245 (294)
Q Consensus 167 ~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~ 245 (294)
+||++++++++++++.++++++++...|+|.++|++..+++++.+++.|+|.++|++|+|+.|+ ++++++|+++|+++|
T Consensus 157 ~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~ 236 (268)
T TIGR01297 157 ADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLD 236 (268)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCC
Confidence 9999999999999999999999999999999988899999999999999999999999999999 999999999999999
Q ss_pred hhHHHHHHHHHHHHHh-cCCCcceEEEEeecc
Q 022609 246 LKEAHAIGESLQNKIE-KLPEVERAFVHLDYE 276 (294)
Q Consensus 246 v~~~~~i~~~i~~~l~-~~~~v~~v~i~~ep~ 276 (294)
++|+|++.++++++++ +.|++.+++||+||+
T Consensus 237 ~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 237 LKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 9999999999999996 569999999999994
No 5
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-48 Score=336.47 Aligned_cols=268 Identities=17% Similarity=0.219 Sum_probs=244.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHH
Q 022609 1 MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMAT 80 (294)
Q Consensus 1 ~~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~ 80 (294)
+++++.+|..++++|+++|+.+||+||+||++|+++|+++.++++++.+.++|+++++|||||+|+|.+++++++++++.
T Consensus 24 l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~ 103 (296)
T COG1230 24 LLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIV 103 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cchhhhhhhhhhhhhHHHHHHHHHHHH
Q 022609 81 LGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS--GNKIVRAYAKDHYFDVVTNVVGLVAAV 158 (294)
Q Consensus 81 ~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~l~a~~~~~~~d~~~s~~~~i~~~ 158 (294)
.++++++|+++|+++|.+.+. ..+++++++++++|....+..++- ++.++|+...|.+.|.++|++++++++
T Consensus 104 ~s~~I~~EAi~R~~~P~~i~~------~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~i 177 (296)
T COG1230 104 VSLLILWEAIQRLLAPPPIHY------SGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGSVGVIIAAI 177 (296)
T ss_pred HHHHHHHHHHHHhcCCCCCCc------cchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998853 558889999999999987777664 368899999999999999999999998
Q ss_pred Hhhhh-hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEE
Q 022609 159 LGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEV 236 (294)
Q Consensus 159 ~~~~~-~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~ 236 (294)
+..++ |+|+||+++++++++++..+++++|++...|++..|+....+++++.+.+.|+|.++||+|+|+.++ .....+
T Consensus 178 ~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlHvWsi~~~~~~~t~ 257 (296)
T COG1230 178 VIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSITGGEHALTL 257 (296)
T ss_pred HHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecccCCCCCCceeEEE
Confidence 88766 8899999999999999999999999999999987766667999999999999999999999999975 678999
Q ss_pred EEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccC
Q 022609 237 DIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 277 (294)
Q Consensus 237 ~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~ 277 (294)
|+++++..+ .+++.+++++.+.+.+++.++|+|+|+..
T Consensus 258 Hv~v~~~~~---~~~~~~~~~~~l~~~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 258 HVVVDEVAD---ADAALDQIVRRLLEKYGIEHVTIQLETEG 295 (296)
T ss_pred EEEecCccc---hHHHHHHHHHHHhhhcCcceEEEEecCCC
Confidence 999995533 23388899999988889999999999863
No 6
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=2.8e-48 Score=343.96 Aligned_cols=273 Identities=24% Similarity=0.429 Sum_probs=238.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHH
Q 022609 1 MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMAT 80 (294)
Q Consensus 1 ~~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~ 80 (294)
|+++++++++++++|+.+|+.+||.++++||+|++.|+++.++++++.+.+++|+|++|||||+|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH----hc--chhhhhhhhhhhhhHHHHHHHH
Q 022609 81 LGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SG--NKIVRAYAKDHYFDVVTNVVGL 154 (294)
Q Consensus 81 ~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~--~~~l~a~~~~~~~d~~~s~~~~ 154 (294)
.++.++.+++++++++++.+. +.+.+.++++++++|..++++.+| .+ ++.+++++.|++.|.+.+++++
T Consensus 81 ~~~~~~~~si~~~~~~~~~~~-----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~ 155 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPSP-----PGIVLIVALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVL 155 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSST-----TTS-THHHHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-
T ss_pred hHHHHHHHHhhcccccccchh-----hhhhhhhhhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHH
Confidence 999999999999999965532 233445588899999988777765 44 8889999999999999998777
Q ss_pred HHHHHhhhh-hh-chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-e
Q 022609 155 VAAVLGDSF-YW-WIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-L 231 (294)
Q Consensus 155 i~~~~~~~~-~~-~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~ 231 (294)
++.++.... +. |+||++++++++++++.+++.+|++...|+|+++|++..+++++.+++.|+|.+++++|+|+.|+ +
T Consensus 156 i~~~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~ 235 (284)
T PF01545_consen 156 ISLLLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIESVPGVIEVHDLRVWQVGRNK 235 (284)
T ss_dssp SSSTSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTSS-SEEEEEEEEEETT-E
T ss_pred HHHHHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhccCCceEeccceEEEEecCCc
Confidence 776666554 44 49999999999999999999999999999999888888999999999999999999999999999 8
Q ss_pred EEEEEEEEeCCCCChhHHHHHHHHHHHHHh-cCCCcceEEEEeeccCC
Q 022609 232 YFVEVDIELPEELPLKEAHAIGESLQNKIE-KLPEVERAFVHLDYECD 278 (294)
Q Consensus 232 ~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~-~~~~v~~v~i~~ep~~~ 278 (294)
+++++|+++|++++++|++++++++++.++ +++++.+++||+||++.
T Consensus 236 ~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 236 YVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp EEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 999999999999999999999999999997 47899999999999754
No 7
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-43 Score=312.83 Aligned_cols=285 Identities=50% Similarity=0.729 Sum_probs=259.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHH
Q 022609 2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 81 (294)
Q Consensus 2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 81 (294)
++++++|+.+++.|+++|+.+||+|++||++|++.|.++.++.++.....++||+.+||+|++|.|+++.+.++.+|.++
T Consensus 118 ~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~iMa~a 197 (412)
T KOG1485|consen 118 WIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVIMAMA 197 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCC-Ccchh-----hHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhhhhhhhhhhhHHHHHHHH
Q 022609 82 GFQVLIEAVEKLVKDEPPK-KMNTV-----QLEWLYSIMIGATVVKLALWIYCKSSGN-KIVRAYAKDHYFDVVTNVVGL 154 (294)
Q Consensus 82 ~~~i~~~ai~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~a~~~~~~~d~~~s~~~~ 154 (294)
|..++.+++.++..|.... ..+.+ ..+|..++++....+.+.+++++++.++ ..++++++|+++|++++.+++
T Consensus 198 gv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaL 277 (412)
T KOG1485|consen 198 GVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVAL 277 (412)
T ss_pred HHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999998833221 11111 1237777788888888999999987775 889999999999999999999
Q ss_pred HHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcC-CCcceeeEEEEEEeCCeEE
Q 022609 155 VAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYF 233 (294)
Q Consensus 155 i~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~-~~V~~v~~~~~~~~g~~~~ 233 (294)
+|+.++.++++|+||+++++++.++++.|.+...++..+|.|++.|+|..+++...+.+. +.++.++.++.+..|..++
T Consensus 278 va~~la~~~~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g~~~~ 357 (412)
T KOG1485|consen 278 VAASLAYYYNYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFGSHYF 357 (412)
T ss_pred HHHHHHHhhhhcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecccceEE
Confidence 999999988999999999999999999999999999999999988999988888877777 4789999999999999999
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccCCCCCccccc
Q 022609 234 VEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVL 286 (294)
Q Consensus 234 v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~~~~~~~~~~ 286 (294)
+++|+.+|++++++++|++.+-+++.|+..|.+.++++|+|.+..+++.|+-.
T Consensus 358 Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~e~~hr~~~~~~ 410 (412)
T KOG1485|consen 358 VEVHIVLDEDLSLSVAHDIGETLQKKIELLPEVERAFVHIDYEFLHRPHHEHL 410 (412)
T ss_pred EEEeeecCCCCccHHHHHHHHHHHHHHhhcchheeeeeecCccccCCchHhhc
Confidence 99999999999999999999999999999999999999999998888777543
No 8
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-36 Score=261.33 Aligned_cols=277 Identities=14% Similarity=0.143 Sum_probs=247.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHH
Q 022609 1 MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMAT 80 (294)
Q Consensus 1 ~~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~ 80 (294)
++++.++++.+.+.|.+.|+..||+|+++||-|.+.|..+-.+++++.+.+++|++++..|||+|.|.+++++.-+.++.
T Consensus 75 L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~ 154 (379)
T KOG1482|consen 75 LSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWV 154 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh------c---------------chhhhhh
Q 022609 81 LGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS------G---------------NKIVRAY 139 (294)
Q Consensus 81 ~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~---------------~~~l~a~ 139 (294)
....+++++++|+++++.+.+ -..+++++.+++++|..+....... + |.++++.
T Consensus 155 ~tgvLV~~Ai~Rl~s~~~ev~-----g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~nvraA 229 (379)
T KOG1482|consen 155 VTGVLVYEAIQRLLSGDYEVN-----GGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNLNVRAA 229 (379)
T ss_pred hhhhhHHHHHhhhhcCceeec-----ceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccchHHHHH
Confidence 999999999999999985533 2456777888888888764443211 1 2678999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhh--hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCc
Q 022609 140 AKDHYFDVVTNVVGLVAAVLGDSF--YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEV 217 (294)
Q Consensus 140 ~~~~~~d~~~s~~~~i~~~~~~~~--~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V 217 (294)
..|.+.|.+.|+++++++.+.++. |.+.||++.++.+...+..-.+++|+.+..||+..|..-..+.+++.+.+++||
T Consensus 230 yiHVlGDliQSvGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~~iegV 309 (379)
T KOG1482|consen 230 FVHVLGDLIQSVGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLLSIEGV 309 (379)
T ss_pred HHHHHHHHHHHHHHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHhhhcce
Confidence 999999999999999999888765 779999999999999999999999999999998765555599999999999999
Q ss_pred ceeeEEEEEEeC-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccCCCCCcccc
Q 022609 218 KRIDTVRAYTFG-VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTV 285 (294)
Q Consensus 218 ~~v~~~~~~~~g-~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~~~~~~~~~ 285 (294)
+.+|++|+|..+ ++..+.+|+..+++ .+.+++.+++++.+++.+++.++|+|+||...+...|..
T Consensus 310 ~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~~~c~~ 375 (379)
T KOG1482|consen 310 KAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYGISHVTIQIEPYTEEMDDCLM 375 (379)
T ss_pred eEEEEEEEEEEecCceEEEEEEeecCC---CCHHHHHHHHHHHHHhhcceEEEEEEecCCccchhhHhh
Confidence 999999999998 57889999999988 888999999999999889999999999998777666554
No 9
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-36 Score=262.34 Aligned_cols=267 Identities=16% Similarity=0.227 Sum_probs=225.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHH
Q 022609 2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 81 (294)
Q Consensus 2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 81 (294)
+.-+++++++++.|++.|+.++|+||++|++|++.|+++..+++++.+.+++.+++++||||.|+|.++++++++|+...
T Consensus 12 i~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~al 91 (404)
T KOG1483|consen 12 ISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTAL 91 (404)
T ss_pred eehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999998888875569999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------
Q 022609 82 GFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS------------------------------ 131 (294)
Q Consensus 82 ~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------ 131 (294)
++.++.|+++|+++|....+ +...+.+.+++++.|.+-+......
T Consensus 92 c~~I~~EA~~R~I~p~~i~~-----P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~ 166 (404)
T KOG1483|consen 92 CVSILIEAIERIIEPHHIEN-----PILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHSH 166 (404)
T ss_pred HHHHHHHHHHhhcCCccccC-----ceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCchh
Confidence 99999999999999988753 4556666777777775432221000
Q ss_pred ----------------------------------------------------------cchhhhhhhhhhhhhHHHHHHH
Q 022609 132 ----------------------------------------------------------GNKIVRAYAKDHYFDVVTNVVG 153 (294)
Q Consensus 132 ----------------------------------------------------------~~~~l~a~~~~~~~d~~~s~~~ 153 (294)
++.+.+..+.|.+.|+.+++++
T Consensus 167 ~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~V 246 (404)
T KOG1483|consen 167 AIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSIIV 246 (404)
T ss_pred ccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccceEE
Confidence 0011234456788899999988
Q ss_pred HHHHHHhhhh----hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeC
Q 022609 154 LVAAVLGDSF----YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFG 229 (294)
Q Consensus 154 ~i~~~~~~~~----~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g 229 (294)
+.++++.++. .+|+||+.+++++..+++.+++++|++...|++..|..-..+++++.+..+|||.++|++|+|++.
T Consensus 247 i~~A~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~~gv~~vh~lhvWqL~ 326 (404)
T KOG1483|consen 247 IVSALFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTVPGVISVHDLHVWQLA 326 (404)
T ss_pred EEEEEEEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcCcceeeeeeeeeeeec
Confidence 8888777653 448999999999999999999999999999998765555599999999999999999999999995
Q ss_pred -CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccC
Q 022609 230 -VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 277 (294)
Q Consensus 230 -~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~ 277 (294)
+++.+.+||+++.. .+.-+++++|++.++++ |++.+|||+|..+
T Consensus 327 ~~r~IAt~Hi~~~~p---~~~~~~a~~ir~~fh~~-GIhs~TiqPeF~~ 371 (404)
T KOG1483|consen 327 GSRIIATIHIQIQNP---KEYMKIAEKIRSYFHDQ-GIHSTTIQPEFAP 371 (404)
T ss_pred cceEEEEEEEEecCc---HHHHHHHHHHHHHHHhc-CCcceeeccchhh
Confidence 57889999999766 66679999999999885 9999999999654
No 10
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-34 Score=247.65 Aligned_cols=263 Identities=15% Similarity=0.210 Sum_probs=223.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHHH
Q 022609 3 ISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLG 82 (294)
Q Consensus 3 is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~~ 82 (294)
.-+.+|+.++.++++.+..+||..+++|++|+++|+.+..+.+.+.+.+++|++..||||+.|.|.++++.+++++.+++
T Consensus 39 ~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~a 118 (354)
T KOG1484|consen 39 LFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLIA 118 (354)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHH-HHHHHHh----c-------------------------
Q 022609 83 FQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLAL-WIYCKSS----G------------------------- 132 (294)
Q Consensus 83 ~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~----~------------------------- 132 (294)
++++.|+++|+++|..... .-.+.++.++.++|+.- +.+.... +
T Consensus 119 ~fi~~Es~eRl~~ppei~t------~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~~~~ 192 (354)
T KOG1484|consen 119 FFIFSESVERLFDPPEIHT------NRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVWDLH 192 (354)
T ss_pred HHHhHHHHHHhcCchhcCC------ceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhccccccccccccc
Confidence 9999999999999965532 33455677777777742 3332111 0
Q ss_pred -----------chhhhhhhhhhhhhHHHHHHHHHHHHHhhhh-hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022609 133 -----------NKIVRAYAKDHYFDVVTNVVGLVAAVLGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAP 200 (294)
Q Consensus 133 -----------~~~l~a~~~~~~~d~~~s~~~~i~~~~~~~~-~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~ 200 (294)
+..+.....|.+.|.+.+++++++.++...+ |.++||+++++|++.++...++++|++.+.||++. |
T Consensus 193 ~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~t-P 271 (354)
T KOG1484|consen 193 HHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRT-P 271 (354)
T ss_pred cccccccCCcccccccchhHHHHHHHhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 1124466789999999999999999888754 89999999999999999999999999999999765 6
Q ss_pred hHHHHHHHHHHHc---CCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 201 PEILQKLTYLVIR---HPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 201 ~~~~~~i~~~i~~---~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
|+..+++++.+++ .+||.++.+-|+|+++. .+...+|++|.++ .+.+.+...+.+.++.. ||++.|+|+|.+
T Consensus 272 p~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~d---ade~~vl~~V~~~~~~~-gV~~ltvQv~~~ 347 (354)
T KOG1484|consen 272 PHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSD---ADEQSVLAHVTRKLEDA-GVKDLTVQVEKE 347 (354)
T ss_pred hhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecC---cchhHHHHHHHHHHHhc-ceeEEEEEEecc
Confidence 6676666666666 49999999999999997 5889999999999 66677888888888764 799999998865
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.3e-30 Score=211.76 Aligned_cols=270 Identities=17% Similarity=0.154 Sum_probs=227.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHH-HHhcCCCCCCCCCCcchHHhHHHHHHHHHHH
Q 022609 1 MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTH-VAMKNINIYKYPIGKLRVQPVGIIIFAAIMA 79 (294)
Q Consensus 1 ~~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~-~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~ 79 (294)
+.+|++.+++++.+.++.|+.+||.++.-||++|+.|+....+++... ...++|++.|||||++-+|++.-.+++.++.
T Consensus 22 L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing~ll~ 101 (314)
T COG3965 22 LRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAINGTLLA 101 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhccHHHH
Confidence 357999999999999999999999999999999999999999998874 4455777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh----cchhhhhhhhhhhhhHHHHHHHHH
Q 022609 80 TLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS----GNKIVRAYAKDHYFDVVTNVVGLV 155 (294)
Q Consensus 80 ~~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~l~a~~~~~~~d~~~s~~~~i 155 (294)
+.+.+.++.++..+++++.+. .+.++.++++++...+..+++..||. +|+.+.++...|.+|.+.|.+.++
T Consensus 102 ll~lyAlinAl~~l~dGGR~v-----~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~al~V 176 (314)
T COG3965 102 LLCLYALINALGSLLDGGREV-----EPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAALFV 176 (314)
T ss_pred HHHHHHHHHHHHHHhcCCccc-----cccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 36778888889988888887776653 478899999999999999987666
Q ss_pred HHHHhhh--------hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCccee--eEEEE
Q 022609 156 AAVLGDS--------FYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRI--DTVRA 225 (294)
Q Consensus 156 ~~~~~~~--------~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v--~~~~~ 225 (294)
+-..++. +.+|+||.+-.+++++++..+++.++.+.++++.-+ |.|..+++.....+..+-..+ ++.++
T Consensus 177 aF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmt-P~el~q~ies~~~~~v~k~~f~~~~~yv 255 (314)
T COG3965 177 AFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMT-PNELQQSIESHAHEIVEKYGFPSYHVYV 255 (314)
T ss_pred HHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 5444432 266999999999999999999999999999999765 557777777766665221222 34447
Q ss_pred EEeCCeEEEEEEEEeCCCC---ChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 226 YTFGVLYFVEVDIELPEEL---PLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 226 ~~~g~~~~v~~~i~v~~~~---~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
-|+|+.+++++|+.+|++. ++++.++|+|++.+.+.+.+.-..+|+.+..+
T Consensus 256 ArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT~D 309 (314)
T COG3965 256 ARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFTRD 309 (314)
T ss_pred HHhccceEEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEEecc
Confidence 7889999999999998775 78899999999999998877667888877654
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=156.85 Aligned_cols=230 Identities=18% Similarity=0.138 Sum_probs=162.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHH-HHH
Q 022609 2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAI-MAT 80 (294)
Q Consensus 2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~-l~~ 80 (294)
-++++.|.+-..+|+.+|+.+||.+++|+++||++|..+.++..++...+.+.||..|||||.+..++..++.++- +++
T Consensus 210 atAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGIfc~ 289 (503)
T KOG2802|consen 210 ATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGIFCM 289 (503)
T ss_pred hhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccceeee
Confidence 4678999999999999999999999999999999999999999999888888888999999999999999999984 445
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH--H--HHH-h--------------cchhhhhhhh
Q 022609 81 LGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWI--Y--CKS-S--------------GNKIVRAYAK 141 (294)
Q Consensus 81 ~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~--~~~-~--------------~~~~l~a~~~ 141 (294)
.+...++++++.+++|+|.++ ..|+..+...+++....-.. + .+| . ++|..-+.
T Consensus 290 G~GlSiyhGv~gLlhpePi~~-----l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DPs~nvV-- 362 (503)
T KOG2802|consen 290 GCGLSIYHGVMGLLHPEPIES-----LLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDPSTNVV-- 362 (503)
T ss_pred cccchhhhccccccCCCCCcc-----hHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCcceEE--
Confidence 666678999999999999864 45666555555555432111 1 111 1 12222222
Q ss_pred hhhhhHHHHHHHHHHHH---Hhhh-hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCc
Q 022609 142 DHYFDVVTNVVGLVAAV---LGDS-FYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEV 217 (294)
Q Consensus 142 ~~~~d~~~s~~~~i~~~---~~~~-~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V 217 (294)
...|.....++.+++. +... +.|..|++++++++.++... +
T Consensus 363 -l~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV----------------------------------e 407 (503)
T KOG2802|consen 363 -LLEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV----------------------------------E 407 (503)
T ss_pred -EecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH----------------------------------H
Confidence 3456655554444432 2222 38899999999998876443 1
Q ss_pred ceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHH-------------------------------------HHHHHHHHHH
Q 022609 218 KRIDTVRAYTFGV-LYFVEVDIELPEELPLKEA-------------------------------------HAIGESLQNK 259 (294)
Q Consensus 218 ~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~-------------------------------------~~i~~~i~~~ 259 (294)
.+++|+|....|. +.....++.+|..+-.+.. -.-.|++|+.
T Consensus 408 ~diyDvK~~diG~g~vRfKAE~DFdGr~vtrsYL~kqd~akml~e~~~~~~~e~le~fml~~GEnivd~lG~EvDRlEke 487 (503)
T KOG2802|consen 408 NDIYDVKATDIGLGKVRFKAEVDFDGRVVTRSYLEKQDFAKMLQEIQEVKTPEELETFMLKHGENIVDTLGAEVDRLEKE 487 (503)
T ss_pred HhhhhccceeeccceeEEEEEeccCchhhHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHcchHHHHHhhhHHHHHHHH
Confidence 2367777777775 4445666666554322211 0125678888
Q ss_pred Hh-cCCCcceEEEEe
Q 022609 260 IE-KLPEVERAFVHL 273 (294)
Q Consensus 260 l~-~~~~v~~v~i~~ 273 (294)
|+ +.|++.||.+++
T Consensus 488 l~~~~PeirHVDlEi 502 (503)
T KOG2802|consen 488 LKKRNPEIRHVDLEI 502 (503)
T ss_pred HHHhCCCceeeeeec
Confidence 86 578888888765
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.58 E-value=5e-07 Score=80.55 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=82.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHH
Q 022609 2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 81 (294)
Q Consensus 2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 81 (294)
.++++.+..+..++.-.|-.+||+++.||+.|..+|+++++..+++..... +||..++++++++++++++..
T Consensus 124 l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~--------~g~~~lD~i~a~~I~~~Il~~ 195 (304)
T COG0053 124 LISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPLAALLISLYILKT 195 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999999999999999866433 689999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCC
Q 022609 82 GFQVLIEAVEKLVKDEPPK 100 (294)
Q Consensus 82 ~~~i~~~ai~~l~~~~~~~ 100 (294)
++.++++++..|++....+
T Consensus 196 ~~~~~~~s~~~L~d~~~~~ 214 (304)
T COG0053 196 GFRLFKESVNELMDAALDP 214 (304)
T ss_pred HHHHHHHHHHHHhCcCCCH
Confidence 9999999999999966553
No 14
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.28 E-value=8.7e-06 Score=72.71 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHHH
Q 022609 3 ISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLG 82 (294)
Q Consensus 3 is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~~ 82 (294)
++++.|.++...+...+..++|.++.+|+.|+..|+++++..+.+...+. +|+..+|++++++.+++++..+
T Consensus 123 ~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~il~~~ 194 (299)
T PRK09509 123 VALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYILYSA 194 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHHHHHH
Confidence 45566677676777777789999999999999999999988877765542 5788999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCC
Q 022609 83 FQVLIEAVEKLVKDEPP 99 (294)
Q Consensus 83 ~~i~~~ai~~l~~~~~~ 99 (294)
+.++.+++..|++..+.
T Consensus 195 ~~i~~~~~~~Ll~~~~~ 211 (299)
T PRK09509 195 LRMGYEAVQSLLDRALP 211 (299)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 99999999999997655
No 15
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.24 E-value=6.5e-06 Score=72.22 Aligned_cols=89 Identities=18% Similarity=0.299 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHHH
Q 022609 3 ISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLG 82 (294)
Q Consensus 3 is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~~ 82 (294)
+++++|.+++..+.-.+...+|.++.+|+.|++.|+++++..+++...+. ||+.++|++++++.+++++..+
T Consensus 102 ~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i~~~~ 173 (268)
T TIGR01297 102 VGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLILYTA 173 (268)
T ss_pred HHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHH
Confidence 46677777777777778889999999999999999999998888766653 5678999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCC
Q 022609 83 FQVLIEAVEKLVKDEPP 99 (294)
Q Consensus 83 ~~i~~~ai~~l~~~~~~ 99 (294)
+.+++++...+++..+.
T Consensus 174 ~~l~~~~~~~Ll~~~~~ 190 (268)
T TIGR01297 174 FRLLKESINVLLDAAPD 190 (268)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 99999999999998764
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.58 E-value=0.00057 Score=61.39 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=61.2
Q ss_pred hchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022609 22 SGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPK 100 (294)
Q Consensus 22 ~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~ai~~l~~~~~~~ 100 (294)
.+|.++.+|+.|...|+++++..+++...... .|+..++++++++++++++..++.++++++..|++..+.+
T Consensus 148 ~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~ 219 (312)
T PRK03557 148 EKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVS 219 (312)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 57899999999999999999988777544321 3555699999999999999999999999999999877653
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.017 Score=52.78 Aligned_cols=87 Identities=20% Similarity=0.257 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHHH
Q 022609 3 ISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLG 82 (294)
Q Consensus 3 is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~~ 82 (294)
+++....+.+..-.+.+..++|..+.|-|+|-..|+++..+++++...+- |.++.+++++++.++.+++..+
T Consensus 235 i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~ii~t~ 306 (412)
T KOG1485|consen 235 IMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYIIYTG 306 (412)
T ss_pred ehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheehhhhh
Confidence 34445555566666677889999999999999999999999999877764 4557889999999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 022609 83 FQVLIEAVEKLVKDE 97 (294)
Q Consensus 83 ~~i~~~ai~~l~~~~ 97 (294)
.....+++..|.+..
T Consensus 307 ~~t~~~~i~~Lvg~~ 321 (412)
T KOG1485|consen 307 GRTGLENIKELVGRS 321 (412)
T ss_pred hHHHHHHHHHHhCCC
Confidence 999999999999763
No 18
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=95.12 E-value=0.28 Score=35.81 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCC--hhHHHHHHHHHHHHHhcCCCcceEEEEeeccC
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELP--LKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 277 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~--v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~ 277 (294)
.+|.+.+.+.|++..-.++.+.+.|..=.+.+.++..++.+ ..+..++++++++.+++.-|+. +.|++.|..
T Consensus 7 ~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~lv~~g 80 (96)
T PF14535_consen 7 SQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVELVPPG 80 (96)
T ss_dssp HHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-TT
T ss_pred HHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEEECCC
Confidence 57889999999988777888888888777888899888764 4688999999999998765764 577766643
No 19
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=94.35 E-value=0.048 Score=48.03 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHhc--hHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc-hHHhHHHHHHHHHHHHHH
Q 022609 6 YANIVLLACKIFATIKSG--SIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKL-RVQPVGIIIFAAIMATLG 82 (294)
Q Consensus 6 ~~~l~~~~~~~~~~~~~~--S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~-r~E~l~~l~~~~~l~~~~ 82 (294)
+.|..+.....-.+-..+ |.++.+++.|++.|.+.++..+++.....-. ++. -+|++++++.+++++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~i~~~~ 186 (284)
T PF01545_consen 114 IVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALFILYSG 186 (284)
T ss_dssp HHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHHHhhhh
Confidence 334443333333333345 9999999999999999998877664443322 233 379999999999999999
Q ss_pred HHHHHHHHHHhhcCCCC
Q 022609 83 FQVLIEAVEKLVKDEPP 99 (294)
Q Consensus 83 ~~i~~~ai~~l~~~~~~ 99 (294)
+.++.++...|++..+.
T Consensus 187 ~~~~~~~~~~Ll~~~~~ 203 (284)
T PF01545_consen 187 YPLIKESIRILLDASPD 203 (284)
T ss_dssp HHHHHHHHHHHTT-SHH
T ss_pred hhchhhhhccccccccc
Confidence 99999999999997643
No 20
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=92.74 E-value=1.7 Score=38.64 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=58.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022609 24 SIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPK 100 (294)
Q Consensus 24 S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~ai~~l~~~~~~~ 100 (294)
+.-+-+--+|.+.|++.++..+.+....+. +||...+++.+++.+++++..+..++.++..-++++.|..
T Consensus 152 ~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~-------~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~ 221 (296)
T COG1230 152 NLNMRGAYLHVLGDALGSVGVIIAAIVIRF-------TGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEG 221 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 577778889999999999888776433332 4677789999999999999999999999999999988753
No 21
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=92.65 E-value=1.4 Score=32.59 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=38.7
Q ss_pred EEEEEEe-CCeEEEEEEEEeCCCCChhHH-HHHHHHHHHHHhcCCC--cceEEEEee
Q 022609 222 TVRAYTF-GVLYFVEVDIELPEELPLKEA-HAIGESLQNKIEKLPE--VERAFVHLD 274 (294)
Q Consensus 222 ~~~~~~~-g~~~~v~~~i~v~~~~~v~~~-~~i~~~i~~~l~~~~~--v~~v~i~~e 274 (294)
.+++... ++.+.+++++.+..+.++.+. .++++++++.+++.-| +.+|.|+++
T Consensus 49 ~v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 49 GVKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred CeEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 3566655 678899999999988777654 7777788888876444 557777765
No 22
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=90.27 E-value=2.6 Score=34.31 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc-CCCcceEEEEeeccC
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLDYEC 277 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~-~~~v~~v~i~~ep~~ 277 (294)
..+..+++.+.+.+++|| .+..+.-.|+..+|-+.+. ... ....+++++|++.+++ .|++.+|.|.-+|.-
T Consensus 73 ~~~~a~~i~~~v~~~~~V---~~A~vvv~~~~a~Vav~~~-~~~---~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~~ 144 (177)
T PF09580_consen 73 RQQLADRIANRVKKVPGV---EDATVVVTDDNAYVAVDLD-FNR---FNTKKIKKKVEKAVKSADPRIYNVYVSTDPDI 144 (177)
T ss_pred HHHHHHHHHHHHhcCCCc---eEEEEEEECCEEEEEEEec-ccc---cchhHHHHHHHHHHHHhCCCccEEEEEcCHHH
Confidence 446678888888888765 5666777799999988888 333 5667899999999986 788899999888753
No 23
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=89.18 E-value=5 Score=32.22 Aligned_cols=71 Identities=11% Similarity=0.195 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc-CCCcceEEEEeeccC
Q 022609 202 EILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLDYEC 277 (294)
Q Consensus 202 ~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~-~~~v~~v~i~~ep~~ 277 (294)
+..++|.+.+.++|+ |++..+.-.|+..+|-+.+.- +..-...+++++++.+.+++ .|.+.+|.|.-+|.-
T Consensus 54 ~~A~~Ia~~v~~v~~---V~dA~vvVtg~~A~Vgv~~~~--~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd~ 125 (158)
T TIGR02898 54 DVADEIASEAAKVKG---VKDATVVITGNYAYVGVDLTN--GLEGSVTDELKEKVAETVKSTDNRIANVYVSADPDT 125 (158)
T ss_pred HHHHHHHHHHhcCCC---CceEEEEEECCEEEEEEEcCC--CcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHHH
Confidence 556777777777765 556777777998887775543 33335678999999999987 899999999988853
No 24
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=87.36 E-value=7.4 Score=31.77 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHcC--CCc-------ceeeEEEEEEe-CC--eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcce
Q 022609 201 PEILQKLTYLVIRH--PEV-------KRIDTVRAYTF-GV--LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVER 268 (294)
Q Consensus 201 ~~~~~~i~~~i~~~--~~V-------~~v~~~~~~~~-g~--~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~ 268 (294)
+...++|.++++++ |+. --++++.+... ++ +..+.+.+..+.- .....+++.++++++..+++.+
T Consensus 72 ~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c---~~~~~L~~dV~~aL~~l~gV~~ 148 (174)
T TIGR03406 72 EDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGC---GMGPVLVEDVEDKVLAVPNVDE 148 (174)
T ss_pred cccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCC---cHHHHHHHHHHHHHHhCCCcee
Confidence 34468899999887 331 11445555441 12 4555555544433 5668899999999998899998
Q ss_pred EEEEeecc
Q 022609 269 AFVHLDYE 276 (294)
Q Consensus 269 v~i~~ep~ 276 (294)
+.|++..+
T Consensus 149 V~V~l~~d 156 (174)
T TIGR03406 149 VEVELVFD 156 (174)
T ss_pred EEEEEEec
Confidence 88877654
No 25
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=87.17 E-value=15 Score=30.13 Aligned_cols=102 Identities=11% Similarity=0.104 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-chhhhhhhhhhhhhHHHHHHHHHHH
Q 022609 79 ATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSG-NKIVRAYAKDHYFDVVTNVVGLVAA 157 (294)
Q Consensus 79 ~~~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~a~~~~~~~d~~~s~~~~i~~ 157 (294)
++.|+..+..++..++...... -..+..+..++++.+....+++|..|.. +...|.-......-...++..-++.
T Consensus 103 l~lg~~aLlsgitaff~~nA~~----~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v 178 (226)
T COG4858 103 LFLGAMALLSGITAFFQKNAQV----YGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAV 178 (226)
T ss_pred HHHHHHHHHHHHHHHHhcCCcc----hhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHH
Confidence 3445555566667777655331 1233344445555555555655543332 2222322222222222222221111
Q ss_pred HHh-----hhhhhchhhHHHHHHHHHHHHHHH
Q 022609 158 VLG-----DSFYWWIDPAGAILLAVYTITNWS 184 (294)
Q Consensus 158 ~~~-----~~~~~~~D~~~si~i~~~i~~~~~ 184 (294)
.+. ...-+.+||+.-.+++..++..=+
T Consensus 179 ~i~t~~lPtslN~~L~pi~l~IiGav~lalRf 210 (226)
T COG4858 179 MIATVFLPTSLNPQLPPIALTIIGAVILALRF 210 (226)
T ss_pred HHHHhhCCCcCCcCCchHHHHHHHHHHHHHHH
Confidence 111 112568899998888887765444
No 26
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=86.54 E-value=3.6 Score=27.95 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=35.8
Q ss_pred HHHHHHHHcC--CC----cceeeEEEEEEeC-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEE
Q 022609 205 QKLTYLVIRH--PE----VKRIDTVRAYTFG-VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 271 (294)
Q Consensus 205 ~~i~~~i~~~--~~----V~~v~~~~~~~~g-~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i 271 (294)
++|+++++++ |+ +.+..-++-.... ++..+.+.+.. +.. .....+++++++.++..+++.+|.|
T Consensus 2 ~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~~~V~v~l~l~~-~~~--~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 2 QAVRDALKQVKDPELGKDIVELGMVRDISIEGGKVSVSLELPT-PAC--PAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHTT-BETTTSSBTTTTTSEEEEEECTCEEEEEE--SS-TTH--TTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred HHHHHHHhCCCCCCCCCCHHHcCCeeEEEEECCEEEEEEEECC-CCc--hHHHHHHHHHHHHHHhCCCCceEeC
Confidence 4666777666 32 1222223333333 34444444333 333 3678999999999999999988765
No 27
>PRK05783 hypothetical protein; Provisional
Probab=85.95 E-value=7.9 Score=27.52 Aligned_cols=62 Identities=23% Similarity=0.227 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHH-hcCCCcceEEEEeec
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKI-EKLPEVERAFVHLDY 275 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l-~~~~~v~~v~i~~ep 275 (294)
+.|++++.+. |...+.++|+ |.. +++.++-+ +-+++.+.++++.++| -..|-+++.++.+++
T Consensus 21 ~aI~~aL~~l-g~~~V~~VRv---GK~--iel~l~~~---~~e~a~~~v~~mc~~LrLaNpVIe~y~i~~~~ 83 (84)
T PRK05783 21 ETIQRYVIER-YTGNIIEVRA---GKY--LVFKIEAN---SPEEAKELALKIAREGRLYNPIVHKIVVRVRR 83 (84)
T ss_pred HHHHHHHHHc-CCCCcceEEe---eEE--EEEEEcCC---CHHHHHHHHHHHHHhcCcCCceeEEEEEEEEe
Confidence 5677778665 4445667765 443 33444333 3377888888888887 567888888887765
No 28
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=84.58 E-value=12 Score=27.16 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=41.1
Q ss_pred HHHHHHHHHcC--CC----cceeeEEEEEEe-C-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 204 LQKLTYLVIRH--PE----VKRIDTVRAYTF-G-VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 204 ~~~i~~~i~~~--~~----V~~v~~~~~~~~-g-~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
.++|++.+.++ |+ +.+...++--+. | +...+.+.+..+.. ....++.+++++.+++.+|+..+.+.+..
T Consensus 3 ~~~I~~~L~~v~dP~l~~~lv~~g~V~~i~v~~~~~v~i~l~l~~p~~---~~~~~l~~~i~~al~~l~gv~~v~v~i~~ 79 (99)
T TIGR02945 3 KDAVIEALKTVYDPEIPVNIYELGLIYDIDVDDDGHVDIQMTLTAPNC---PVAGSMPGEVENAVRAVPGVGSVTVELVW 79 (99)
T ss_pred HHHHHHHHcCCCCCCCCCCeecCCCeeEEEECCCCeEEEEEEECCCCC---ChHHHHHHHHHHHHHhCCCCceEEEEEEe
Confidence 35566666665 22 112222222222 3 45555555544433 46677899999999888899888887764
No 29
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.53 E-value=12 Score=25.60 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
+.+.+++.+.+.+.. .++.+++....++.+...+.+.++++.+. .++.+.+++..++
T Consensus 10 pGiv~~vt~~la~~~--~nI~dl~~~~~~~~f~~~~~v~~p~~~~~---~~l~~~l~~l~~~ 66 (75)
T cd04870 10 PGLTSALTEVLAAHG--VRILDVGQAVIHGRLSLGILVQIPDSADS---EALLKDLLFKAHE 66 (75)
T ss_pred CCHHHHHHHHHHHCC--CCEEecccEEEcCeeEEEEEEEcCCCCCH---HHHHHHHHHHHHH
Confidence 567899999998874 57888887777877778888888877544 4445555444443
No 30
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=81.29 E-value=9 Score=25.72 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEe
Q 022609 202 EILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHL 273 (294)
Q Consensus 202 ~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ 273 (294)
+..+++.+.+.+.|+|.+++.+ .+.+-.-+++.+++. + ++.+-+.+.+++.||+.++..++
T Consensus 10 ~~~~~~~~~l~~~p~V~~~~~v-----tG~~d~~~~v~~~d~---~---~l~~~i~~~l~~~~gV~~~~t~i 70 (74)
T PF01037_consen 10 DAYDEFAEALAEIPEVVECYSV-----TGEYDLILKVRARDM---E---ELEEFIREKLRSIPGVRRTETSI 70 (74)
T ss_dssp THHHHHHHHHHTSTTEEEEEEE-----SSSSSEEEEEEESSH---H---HHHHHHHHTHHTSTTEEEEEEEE
T ss_pred chHHHHHHHHHcCCCEEEEEEE-----eCCCCEEEEEEECCH---H---HHHHHHHHHhhcCCCEEEEEEEE
Confidence 3588999999999998776443 333334445555433 3 34444555588889998776654
No 31
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=80.39 E-value=26 Score=31.62 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhHHHHHHHHHHHHHhhh--------hhhchhhHHHHHHHHHHHHHHHH
Q 022609 114 MIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDS--------FYWWIDPAGAILLAVYTITNWSE 185 (294)
Q Consensus 114 ~~~~~~v~~~~~~~~~~~~~~~l~a~~~~~~~d~~~s~~~~i~~~~~~~--------~~~~~D~~~si~i~~~i~~~~~~ 185 (294)
.++.....+...++.-..++.-+.+++.|...|..+..+++.+.++.-. +...++.+++..=+++....+.-
T Consensus 41 ~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~a~f 120 (354)
T KOG1484|consen 41 LLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLIAFF 120 (354)
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555666777999999999999999888888877642 13356677777778888888889
Q ss_pred HHHHHHHhhcC
Q 022609 186 TVMENAVSLVG 196 (294)
Q Consensus 186 ~~~~~~~~Ll~ 196 (294)
+.+|+...|++
T Consensus 121 i~~Es~eRl~~ 131 (354)
T KOG1484|consen 121 IFSESVERLFD 131 (354)
T ss_pred HhHHHHHHhcC
Confidence 99999999986
No 32
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=80.34 E-value=18 Score=25.47 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
.-+.|++.+.+. |..++.++|+ |.. +++.++-+ +.+++.+.++++.+.+-..|-+.+-+++++
T Consensus 17 qG~ai~~al~~l-G~~~v~~Vr~---GK~--~~l~~~~~---~~e~a~~~v~~i~~~LLaNpvie~y~i~~~ 79 (80)
T PF02700_consen 17 QGEAIKRALHRL-GYDGVKDVRV---GKY--IELELEAD---DEEEAEEQVEEICEKLLANPVIEDYEIEVE 79 (80)
T ss_dssp HHHHHHHHHHHT-T-TTEEEEEE---EEE--EEEEEE-S---SHHHHHHHHHHHHHHTTS-TTTEEEEEEEE
T ss_pred HHHHHHHHHHHc-CCcccCcEEE---EEE--EEEEEeCC---CHHHHHHHHHHHHHHhcCCCceEEEEEEEE
Confidence 346678888776 6666788877 433 34444444 347888888888888866677888777765
No 33
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=76.91 E-value=12 Score=28.11 Aligned_cols=49 Identities=16% Similarity=0.343 Sum_probs=38.5
Q ss_pred HhhcCCCCC-----hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEe
Q 022609 192 VSLVGQSAP-----PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIEL 240 (294)
Q Consensus 192 ~~Ll~~~~~-----~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v 240 (294)
..|+++..| .|+...|++++...|.+.+|+++.+-+.|+.+.++++|..
T Consensus 54 e~lig~~~~~~~~~sEi~r~I~EaL~~d~rI~~V~~f~f~~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 54 EDLIGKNYPREYVESEIEREIEEALLQDPRITSVENFSFEWEGDSLYVSFTVTT 107 (112)
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEECCEEEEEEEEEE
Confidence 346666333 3557778888888899999999999999999988888864
No 34
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.85 E-value=20 Score=24.24 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHh
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE 261 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~ 261 (294)
+.+..++.+.+.+.. .+|++.++.+.++...++.-...+++-...+..+..+++++.|+
T Consensus 12 ~gLl~~i~~~l~~~~--l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~ 70 (73)
T cd04900 12 PGLFARIAGALDQLG--LNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALE 70 (73)
T ss_pred CCHHHHHHHHHHHCC--CCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 567888999998875 68999999988765566555444544221112233344555543
No 35
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=76.37 E-value=22 Score=24.41 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEe--CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEE
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTF--GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAF 270 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~--g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~ 270 (294)
+.+..+|.+.+.+.. .++.++++... ++...+.+.++++.. ++ .+++.+.|++.++|.+|.
T Consensus 17 ~GlL~dI~~~i~~~~--~nI~~i~~~~~~~~~~~~~~l~v~V~d~---~~----L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 17 PGLLADITSVISENG--VNIRSINARTNKDDGTARITLTVEVKDL---EH----LNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp TTHHHHHHHHHHCSS--SEEEEEEEEE--ETTEEEEEEEEEESSH---HH----HHHHHHHHCTSTTEEEEE
T ss_pred CCHHHHHHHHHHHCC--CCeEEEEeEEeccCCEEEEEEEEEECCH---HH----HHHHHHHHHCCCCeeEEE
Confidence 467888999998874 58889988885 457889999999644 43 556667778888887663
No 36
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=73.26 E-value=69 Score=28.69 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=45.8
Q ss_pred HHHHHHHhcchhhhhhhhhhhhhHHHHHHHHHHHHHhhh-----hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 022609 124 LWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDS-----FYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQS 198 (294)
Q Consensus 124 ~~~~~~~~~~~~l~a~~~~~~~d~~~s~~~~i~~~~~~~-----~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~ 198 (294)
...+.++..+...+..........+.-+++++-+.+... ..+++-++.++++++++.|.++.+.-....+++.-.
T Consensus 62 ~~~~~~~le~~i~k~~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~ 141 (356)
T COG4956 62 VLNWLKRLEEQIRKLPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLRLL 141 (356)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhc
Confidence 333445555555555444444443333333332222211 267889999999999999999999888888877543
No 37
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=72.81 E-value=37 Score=30.42 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=44.3
Q ss_pred CCCCChHHHHHHHHHHHcCCCcceeeEEE-------EEE-eCCe----------EEEEEEEEeCCCCChhHHHHHHHHHH
Q 022609 196 GQSAPPEILQKLTYLVIRHPEVKRIDTVR-------AYT-FGVL----------YFVEVDIELPEELPLKEAHAIGESLQ 257 (294)
Q Consensus 196 ~~~~~~~~~~~i~~~i~~~~~V~~v~~~~-------~~~-~g~~----------~~v~~~i~v~~~~~v~~~~~i~~~i~ 257 (294)
+...+++..+++++.+++.|+|.+++.+- ..+ .|.. +--.+.+.++++. +..+..++++
T Consensus 73 ~~~~~~~~~~~l~~~l~~~~~V~~v~~iskeeAl~~l~~~~g~~~~l~~l~~nPLP~si~V~l~~~~---~~~~~~~~l~ 149 (309)
T TIGR00439 73 EKALAQSDADTVVSLLTRDKGVENINYISREDGLAEFQSWSGFGNLLSMLDGNPLPAVFIVTPDPAF---TPAEMQAILR 149 (309)
T ss_pred CCCCCHHHHHHHHHHHhCCCCccEEEEECHHHHHHHHHHhcCCchhhhhcccCCCCCeEEEEeCCCC---ChHHHHHHHH
Confidence 45667888999999999999998876431 111 1211 1122444444432 2344667778
Q ss_pred HHHhcCCCcceE
Q 022609 258 NKIEKLPEVERA 269 (294)
Q Consensus 258 ~~l~~~~~v~~v 269 (294)
+.+++.|++.++
T Consensus 150 ~~l~~~~gV~~v 161 (309)
T TIGR00439 150 DNITKIPGVEEV 161 (309)
T ss_pred HHHhcCCCCCcc
Confidence 888888888766
No 38
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=72.80 E-value=28 Score=25.74 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 199 APPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 199 ~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
.|.-+..++-+.+.+.+|-.++.++++-+.-+ .-++.+.|.-+.. +..++|.+++++.=.......++..+.-
T Consensus 13 iDSgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~---~~L~~Il~~L~~lga~~~~~~d~~l~~a 86 (103)
T PF04455_consen 13 IDSGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDE---EHLDEILDELHQLGAVPVEPQDAELEPA 86 (103)
T ss_dssp TTSSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSH---HHHHHHHHHHHHHHHHSCCCCEEEECES
T ss_pred echhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCH---HHHHHHHHHHHHHcCCCCCCcccEEEEc
Confidence 35668899999999999988899998855543 4567777777766 7778888888777665555566654433
No 39
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=71.82 E-value=33 Score=24.32 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
+.|.+++.+. |..++.++|+ |.. .++.++-+++ +.+++..+++.+++-..|-+++-.+.++.
T Consensus 20 ~ti~~aL~~l-g~~~V~~vR~---gK~--~el~ld~~~~---e~a~~~v~~mcekLLaNpVIe~y~v~~~~ 81 (83)
T COG1828 20 ETIEKALHRL-GYNEVSDVRV---GKV--IELELDAESE---EKAEEEVKEMCEKLLANPVIEDYEVEVEE 81 (83)
T ss_pred HHHHHHHHHc-CCcccceeee---eeE--EEEEecCcch---hHHHHHHHHHHHHHhCCCceeEEEEEEEe
Confidence 5677778776 4466777776 432 3333333233 66777777777777666888888877764
No 40
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=68.54 E-value=24 Score=24.97 Aligned_cols=71 Identities=7% Similarity=-0.028 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
...+++-+++.-.-..+.++.+.+..+...+.+|.. .|+.-+.+--+-.+++++.+++..+..++.+.+.+
T Consensus 12 ~~~Ir~fl~~~~~~agIs~IeI~r~~~~i~V~I~t~-~pg~iIGk~G~~I~~l~~~l~k~~~~~~v~I~v~e 82 (85)
T cd02411 12 RTMIDEYLEKELERAGYGGMEILRTPLGTQITIYAE-RPGMVIGRGGKNIRELTEILETKFGLENPQIDVQE 82 (85)
T ss_pred HHHHHHHHHhhhhhCcccEEEEEEcCCcEEEEEEEC-CCCceECCCchhHHHHHHHHHHHhCCCCceEEEEE
Confidence 344555554431223677888888777777888884 45554444444445666666544454456666543
No 41
>PRK02047 hypothetical protein; Provisional
Probab=65.24 E-value=44 Score=24.04 Aligned_cols=62 Identities=10% Similarity=0.134 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeC--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcce
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFG--VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVER 268 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g--~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~ 268 (294)
.++..+.|.+.++....-.+-.++..+... +...+++.+.+.+. +| .+.+-+.|++.+.|..
T Consensus 26 ~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~---eq----~~~iY~~L~~~~~Vk~ 89 (91)
T PRK02047 26 HPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSR---EQ----LDNIYRALTGHPMVKV 89 (91)
T ss_pred cHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCH---HH----HHHHHHHHhhCCCEEE
Confidence 567788899988877432334556666553 34446666666554 43 6677777877777754
No 42
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=64.44 E-value=21 Score=23.33 Aligned_cols=57 Identities=5% Similarity=0.032 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEE
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 271 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i 271 (294)
+++++.+...+.+.+. ++++...++...+.=++. .. +.++++++..++.+|+..|.=
T Consensus 2 ~~v~~~L~~~~~~~~~-~i~v~v~~g~v~L~G~v~--s~-------~~~~~a~~~a~~v~gv~~V~n 58 (64)
T PF04972_consen 2 TKVRAALRADPWLPDS-NISVSVENGVVTLSGEVP--SQ-------EQRDAAERLARSVAGVREVVN 58 (64)
T ss_dssp -----------CTT-T-TEEEEEECTEEEEEEEES--SC-------HHHHHHHHHHHCC-STSEEEE
T ss_pred cccccccccccccCCC-eEEEEEECCEEEEEeeCc--HH-------HHHHhHHhhhccCCCcCEEEE
Confidence 4677777776654444 788888877766655543 22 236677777778788877753
No 43
>PRK00907 hypothetical protein; Provisional
Probab=64.12 E-value=51 Score=23.84 Aligned_cols=67 Identities=12% Similarity=0.092 Sum_probs=41.7
Q ss_pred hcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCC--eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcce
Q 022609 194 LVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV--LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVER 268 (294)
Q Consensus 194 Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~--~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~ 268 (294)
.+|. ..++..+.|.+.+++...-.+-..+..+.... ...+.+++.+.+. + -.+.+-+.|++.+.|..
T Consensus 22 VmG~-a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~---e----Qld~iY~~L~~~~~Vkm 90 (92)
T PRK00907 22 AMGT-AERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESR---E----QYDAAHQALRDHPEVKW 90 (92)
T ss_pred EEEc-CchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCH---H----HHHHHHHHHhhCCCEEE
Confidence 3454 35788899999998763223445666665544 3446666666444 3 36677788887777743
No 44
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=64.10 E-value=62 Score=26.79 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCC------eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGV------LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~------~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
+.++.++.+.+.+.. .++.+++....+. .+...+.+.+|++..+.+ +.+++++..++. + +.+.+|
T Consensus 106 PGIV~~vT~~la~~~--iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~---L~~~l~~l~~eL-~---vd~~l~ 176 (190)
T PRK11589 106 PHLIERFTALFDSHH--MNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAAN---IEQAFKALCTEL-N---AQGSIN 176 (190)
T ss_pred CCHHHHHHHHHHHcC--CChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHH---HHHHHHHHHHHh-C---ceEEEE
Confidence 567889999998874 5888998886652 466899999999966554 444444433332 3 344556
Q ss_pred ccC
Q 022609 275 YEC 277 (294)
Q Consensus 275 p~~ 277 (294)
|..
T Consensus 177 ~~~ 179 (190)
T PRK11589 177 VVN 179 (190)
T ss_pred Eee
Confidence 543
No 45
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=63.98 E-value=88 Score=27.71 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHcCCCccee--eEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc----CCCcceEEEEe
Q 022609 201 PEILQKLTYLVIRHPEVKRI--DTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEK----LPEVERAFVHL 273 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v--~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~----~~~v~~v~i~~ 273 (294)
++..+.+++.+++.|+|.+- -.+++...|+ .....+..-+++.--.+-..++..++.+.+++ .|. -.-++++
T Consensus 199 ~~~~~il~~~~~~~~~vl~~p~p~v~~~~~~dssi~~~v~~wv~~~~~~~~~~~~~~~I~~~f~~~gI~ip~-p~~~v~~ 277 (286)
T PRK10334 199 DQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPY-PQMDVNF 277 (286)
T ss_pred HHHHHHHHHHHHhCCceecCCCCEEEEEeeeCceEEEEEEEEEecchhHHHHHHHHHHHHHHHHHCCCcCCC-CCeEEEe
Confidence 34466778888888887542 2577777776 34455555444331122235666777777753 222 2456666
Q ss_pred eccCCCC
Q 022609 274 DYECDHK 280 (294)
Q Consensus 274 ep~~~~~ 280 (294)
++.+.++
T Consensus 278 ~~~~~~~ 284 (286)
T PRK10334 278 KRVKEDK 284 (286)
T ss_pred ccCCccc
Confidence 6654443
No 46
>PRK11023 outer membrane lipoprotein; Provisional
Probab=63.24 E-value=20 Score=29.73 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=44.1
Q ss_pred hcCCCCChHHHHHHHHHHHcCCCcceeeE-EEEEEeCCeEEEEEEEEeCCCC-ChhHHHHHHHHHHHHHhcCCCcceEEE
Q 022609 194 LVGQSAPPEILQKLTYLVIRHPEVKRIDT-VRAYTFGVLYFVEVDIELPEEL-PLKEAHAIGESLQNKIEKLPEVERAFV 271 (294)
Q Consensus 194 Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~-~~~~~~g~~~~v~~~i~v~~~~-~v~~~~~i~~~i~~~l~~~~~v~~v~i 271 (294)
|.|..+.++...+..+..++++||+++++ +++..- .+. +..+=..|..+++..|...+.+....|
T Consensus 81 L~G~V~~~~~k~~A~~ia~~v~GV~~V~N~l~V~~~-------------~~~~~~~~D~~It~kik~~L~~~~~v~~~~I 147 (191)
T PRK11023 81 LTGQSPNAELSERAKQIAMGVEGVNEVYNEIRQGQP-------------IGLGTASKDTWITTKVRSQLLTSDSVKSSNV 147 (191)
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCceeecceeeeccc-------------cccccccCcHHHHHHHHHHHhcCCCCCcceE
Confidence 55666677788899999999999999864 443211 110 001113488888888865555665556
Q ss_pred Eeecc
Q 022609 272 HLDYE 276 (294)
Q Consensus 272 ~~ep~ 276 (294)
+++-+
T Consensus 148 ~V~t~ 152 (191)
T PRK11023 148 KVTTE 152 (191)
T ss_pred EEEEE
Confidence 66544
No 47
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=62.90 E-value=43 Score=24.43 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=17.0
Q ss_pred CcchHHhHHHHHHHHHHHHH
Q 022609 62 GKLRVQPVGIIIFAAIMATL 81 (294)
Q Consensus 62 G~~r~E~l~~l~~~~~l~~~ 81 (294)
||+|.|...+++.++++.+.
T Consensus 78 GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 78 GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred CCCeehhhhhHHHHHHHHHH
Confidence 89999999999998876653
No 48
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=62.68 E-value=38 Score=22.38 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceE
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERA 269 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v 269 (294)
+...++|.....+.. .+++.+.+......-...+.+.++.+- + ..+.+.++|.+.++|.+|
T Consensus 3 ~GvL~Ri~~vf~rRg--~nI~sl~v~~~~~~~~~riti~v~~~~--~----~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 3 PGVLNRITGVFRRRG--FNIESLSVGPTEDPGISRITIVVSGDD--R----EIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp TTHHHHHHHHHHTTT---EECEEEEEE-SSTTEEEEEEEEES-C--C----HHHHHHHHHHCSTTEEEE
T ss_pred cHHHHHHHHHHhcCC--eEEeeEEeeecCCCCEEEEEEEEeeCc--h----hHHHHHHHHhccCCeEeC
Confidence 456778888887764 689999988865544455555554421 2 244466777777776543
No 49
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=61.43 E-value=31 Score=21.89 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=31.6
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCC--CcceEEEEeeccCCCC
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLP--EVERAFVHLDYECDHK 280 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~--~v~~v~i~~ep~~~~~ 280 (294)
++|.+.++.+.++-+++.+.+.+.+.+.. ...++++.++....++
T Consensus 3 i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~ 49 (58)
T cd00491 3 VQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKEN 49 (58)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchh
Confidence 45666667788999999999999996533 3357777777654333
No 50
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.24 E-value=46 Score=22.20 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEe-CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEE
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTF-GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 271 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~-g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i 271 (294)
+....++.+.+.+.. .++..+..... ++...+.+.+++.+. +.-.+++.+.|++.++|.+|.+
T Consensus 11 ~g~l~~I~~~la~~~--inI~~i~~~~~~~~~~~i~~~v~v~~~------~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 11 PGVLSKVLNTIAQVR--GNVLTINQNIPIHGRANVTISIDTSTM------NGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred CchHHHHHHHHHHcC--CCEEEEEeCCCCCCeEEEEEEEEcCch------HHHHHHHHHHHhcCCCeEEEEE
Confidence 456788888887763 35555544221 233446666666333 3356777788888999988764
No 51
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=59.83 E-value=85 Score=25.06 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
.++..+++.+.+.+.|+|..++.+ .|+ +-.-+++.++.. + ++.+-+.+.++..+||.++..++.-
T Consensus 86 ~~~~~~~~~~~l~~~p~V~~~~~v----tG~-~d~~l~v~~~~~---~---~l~~~l~~~l~~~~gV~~~~t~ivl 150 (164)
T PRK11169 86 APDVFEQFNAAVQKLEEIQECHLV----SGD-FDYLLKTRVPDM---S---AYRKLLGETLLRLPGVNDTRTYVVM 150 (164)
T ss_pred ChHHHHHHHHHHhcCcceeeeeee----cCC-CCEEEEEEECCH---H---HHHHHHHHHhhcCCCeeeEEEEEEE
Confidence 456688888999999988777642 354 223344445433 3 3344455677778899877655553
No 52
>PRK14634 hypothetical protein; Provisional
Probab=59.71 E-value=84 Score=25.07 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCC--CChhHHHHHHHHHHHHHhc
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEE--LPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~--~~v~~~~~i~~~i~~~l~~ 262 (294)
+.+.+...+++. | .++.++.+.+.|+...+.+.|.-+.+ .++++-.++.+.+...|..
T Consensus 9 i~~l~~~~~~~~-G-~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~ 68 (155)
T PRK14634 9 LETLASATAADK-G-FELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEA 68 (155)
T ss_pred HHHHHHHHHHHc-C-CEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcc
Confidence 344444444444 3 56889998888888888999987777 9999999999999999964
No 53
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=58.71 E-value=69 Score=25.44 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
+.+.+...+.+. | ..+.++.+.+.|+...+.+.|.-+.+.++++-.++.+.+...|..
T Consensus 9 i~~~~~~~~~~~-g-~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~ 66 (154)
T PRK00092 9 LTELIEPVVEAL-G-YELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDV 66 (154)
T ss_pred HHHHHHHHHHHC-C-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 344455555554 3 568899988888888888888877889999999999999999963
No 54
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=54.90 E-value=32 Score=36.24 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=38.3
Q ss_pred eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 231 LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 231 ~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
.-.+.++++.+++.++++.+++.+++++.+++.|++.+++..+-
T Consensus 558 ~~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v~s~vG 601 (1021)
T PF00873_consen 558 RGEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSVSSRVG 601 (1021)
T ss_dssp TSEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEEEEEES
T ss_pred CCceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhccceEec
Confidence 34688999999999999999999999999999999988887664
No 55
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=54.90 E-value=25 Score=22.86 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=30.9
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCCc--ceEEEEeecc
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPEV--ERAFVHLDYE 276 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v--~~v~i~~ep~ 276 (294)
+++.+.++.|.++-+++.+.+.+.+.+..++ ..++|-++..
T Consensus 4 i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev 46 (60)
T PRK02289 4 VRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDM 46 (60)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEe
Confidence 5777778889999999999999999653343 4666666644
No 56
>PRK00341 hypothetical protein; Provisional
Probab=54.86 E-value=77 Score=22.80 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCC--eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcce
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGV--LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVER 268 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~--~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~ 268 (294)
.++..+.|.+.+++... .+...+..+...+ ...+++.+.+.+. + -.+.+-+.|++.+.|..
T Consensus 27 ~~~~~~~V~~iv~~~~~-~~~~~~~~k~Ss~GkY~S~tv~i~~~s~---~----q~~~iy~~L~~~~~V~m 89 (91)
T PRK00341 27 GVGFKDLVIEILQKHAD-VDLSTLAERQSSNGKYTTVQLHIVATDE---D----QLQDINSALRATGRVHM 89 (91)
T ss_pred chhHHHHHHHHHHHhCC-CcccceeeccCCCCEEEEEEEEEEECCH---H----HHHHHHHHHhhCCCEEE
Confidence 57788889998887642 2345555555533 3446666666544 3 36677788887777753
No 57
>PRK14647 hypothetical protein; Provisional
Probab=54.53 E-value=1.1e+02 Score=24.47 Aligned_cols=57 Identities=7% Similarity=0.052 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
.+.+...+++. | ..+.++.+.+.|+...+.+.|.-+.+.|+++-.++.+.+...|..
T Consensus 11 ~~~i~~~~~~~-G-~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~ 67 (159)
T PRK14647 11 TELAEQVLSSL-G-LELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDV 67 (159)
T ss_pred HHHHHHHHHHC-C-CEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHcc
Confidence 33344444443 3 578888888888877888888878889999999999999999964
No 58
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=54.44 E-value=34 Score=22.09 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=31.1
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCCc--ceEEEEeeccC
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPEV--ERAFVHLDYEC 277 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v--~~v~i~~ep~~ 277 (294)
++|.+.++.|.++-.++.+.+.+.+.+..++ .++++-++..+
T Consensus 4 i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~ 47 (61)
T PRK02220 4 VHIKLIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMS 47 (61)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeC
Confidence 5667667789999999999999999754343 46777776543
No 59
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=53.94 E-value=1.4e+02 Score=25.48 Aligned_cols=65 Identities=9% Similarity=0.006 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeC--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFG--VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g--~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
.+.+.+.+++. + ..+.+++....+ ++..+.+++..... .++..+++-.+++..|+|.++.=+.++
T Consensus 158 r~~L~~~l~~~-~-~~~~~l~~~~~~~~~~~ei~a~l~~~~~-----~~~~le~iv~~L~~~pgV~~v~W~~~~ 224 (225)
T PRK15385 158 RQWLLNIVKEA-A-ICLQGLGSVPAQEQGYKEIRAELVGHAD-----YRKTRELIISRIGDNDNITAIHWSIDS 224 (225)
T ss_pred HHHHHHHHHhC-C-CceEEeEeeecCCCCeEEEEEEEEecCC-----chhhHHHHHHHHhCCCCeEEEEEEecC
Confidence 55565666543 2 568888887764 35566666666543 133566777788888999988766543
No 60
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=53.93 E-value=79 Score=22.60 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHHHHHHcC--CCcceeeEEEEEEeC----CeEEEEEEEEe---CCCCChhHHHHHHHHHHHHHhcCCCc
Q 022609 205 QKLTYLVIRH--PEVKRIDTVRAYTFG----VLYFVEVDIEL---PEELPLKEAHAIGESLQNKIEKLPEV 266 (294)
Q Consensus 205 ~~i~~~i~~~--~~V~~v~~~~~~~~g----~~~~v~~~i~v---~~~~~v~~~~~i~~~i~~~l~~~~~v 266 (294)
+++.+.+++. +-+.++.-+-+++-. ++..+.+.+.. +.+++-+|++++.+++.+.+++..|+
T Consensus 21 ~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ev~~~~~~i~~~l~~~~~~ 91 (94)
T PF03147_consen 21 ADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEEVNEIHDKIIKALEKKLGA 91 (94)
T ss_dssp HHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 3444444444 335556555555532 24555555554 45578889999999999999766564
No 61
>PRK14646 hypothetical protein; Provisional
Probab=53.47 E-value=1.1e+02 Score=24.50 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCC--CCChhHHHHHHHHHHHHHhc
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPE--ELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~--~~~v~~~~~i~~~i~~~l~~ 262 (294)
+.+...+++. | .++.++...+.|+...+.+.|.-+. +.|+++-.++.+.+...|..
T Consensus 11 ~li~p~~~~~-G-~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 11 ILLEKVANEF-D-LKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHc-C-CEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 3344444444 3 6788998888888888888887653 48999999999999999953
No 62
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=52.47 E-value=69 Score=25.25 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
++..+++.+.+.+.|+|..++.. .|+ +-+-+++..++. + ++.+-+.+.+...|||.++..++.-
T Consensus 80 ~~~~~~~~~~l~~~p~V~~~~~~----tG~-~dl~~~v~~~d~---~---~l~~~~~~~l~~~~gV~~~~t~ivl 143 (153)
T PRK11179 80 AKDYPSALAKLESLDEVVEAYYT----TGH-YSIFIKVMCRSI---D---ALQHVLINKIQTIDEIQSTETLISL 143 (153)
T ss_pred cccHHHHHHHHhCCCCEEEEEEc----ccC-CCEEEEEEECCH---H---HHHHHHHHHhhcCCCeeeEEEEEEE
Confidence 34467788889999988766544 243 334444445433 3 3344455677778999876666553
No 63
>PRK11670 antiporter inner membrane protein; Provisional
Probab=51.91 E-value=1.1e+02 Score=28.23 Aligned_cols=67 Identities=7% Similarity=0.073 Sum_probs=41.8
Q ss_pred HHHHHHHHHcC--CC----cce---eeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 204 LQKLTYLVIRH--PE----VKR---IDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 204 ~~~i~~~i~~~--~~----V~~---v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
.++|++.+.++ |+ +.+ ++++.+ .|....+.+++..+.. ...+++.+++++.+++.+++..+++++.
T Consensus 14 ~~~v~~~l~~v~~p~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (369)
T PRK11670 14 RAMVAGTLANFQHPTLKHNLTTLKALHHVAL--LDDTLHIELVMPFVWN---SAFEELKEQCSAELLRITGAKAIDWKLS 88 (369)
T ss_pred HHHHHHHHhcCCCCCCCCChhhhCCeeEEEE--eCCEEEEEEEECCCCc---hHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 47778878776 32 112 233333 2444444444433332 4567799999999999899988888776
Q ss_pred c
Q 022609 275 Y 275 (294)
Q Consensus 275 p 275 (294)
.
T Consensus 89 ~ 89 (369)
T PRK11670 89 H 89 (369)
T ss_pred e
Confidence 5
No 64
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=50.65 E-value=62 Score=24.05 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
..+.+-+.+.+.+ ..+.++.+.+....+.+.+|..-| +.-+.+--+-.+++++.+++..+...+.|++.+
T Consensus 36 ~~IR~yL~k~~~~----agis~I~I~R~~~~i~I~I~t~rP-g~vIG~~G~~i~~L~~~l~~~~~~~~~~I~V~e 105 (109)
T cd02412 36 LKIRKFIKKKLKK----AGISRIEIERKADRVEVTIHTARP-GIIIGKKGAGIEKLRKELQKLLGNKKVRINIVE 105 (109)
T ss_pred HHHHHHHHHHHhh----CCccEEEEEEcCCCEEEEEEeCCC-CcccCCchHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 3334444444433 356688888877777777777764 444455445556666666654342345666543
No 65
>PRK14637 hypothetical protein; Provisional
Probab=50.29 E-value=1.3e+02 Score=23.94 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
..+.+...+++.. .++.++...+.|+...+.+.|.-+.+.++++-.++.+.+...|....+..+-++++-
T Consensus 10 ~~~~v~p~~~~~g--~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVS 79 (151)
T PRK14637 10 YFSECEPVVEGLG--CKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVS 79 (151)
T ss_pred HHHHHHHHHHhcC--CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEe
Confidence 3566677777764 578899999999888888888877889999999999999888864222334455554
No 66
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.06 E-value=70 Score=20.88 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHh
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE 261 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~ 261 (294)
+....++.+.+.+.. .++.+.++...++...-.+++.-+.+.+.. .+..+++++.|+
T Consensus 11 ~gll~~i~~~l~~~~--~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~--~~~~~~i~~~l~ 67 (70)
T cd04899 11 PGLLADVTRVLAELG--LNIHSAKIATLGERAEDVFYVTDADGQPLD--PERQEALRAALG 67 (70)
T ss_pred ccHHHHHHHHHHHCC--CeEEEEEEEecCCEEEEEEEEECCCCCcCC--HHHHHHHHHHHH
Confidence 457888999998874 588899988777644445556544443322 234555666654
No 67
>COG4035 Predicted membrane protein [Function unknown]
Probab=49.93 E-value=17 Score=26.10 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=15.7
Q ss_pred CcchHHhHHHHHHHHHHHHH
Q 022609 62 GKLRVQPVGIIIFAAIMATL 81 (294)
Q Consensus 62 G~~r~E~l~~l~~~~~l~~~ 81 (294)
||+|+|.+.+-+.++.+++.
T Consensus 85 GYGR~Etv~Gt~LA~l~wL~ 104 (108)
T COG4035 85 GYGRVETVVGTFLAVLLWLY 104 (108)
T ss_pred CCceeehhHHHHHHHHHHHh
Confidence 89999999987777666544
No 68
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=49.70 E-value=1.1e+02 Score=22.99 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHcC--CCc-ceeeEEEEEEe----C-C-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEE
Q 022609 200 PPEILQKLTYLVIRH--PEV-KRIDTVRAYTF----G-V-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAF 270 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~--~~V-~~v~~~~~~~~----g-~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~ 270 (294)
..+..++|.++++.+ |++ .++.++-..+- + + ...+.+...- +..+.. ..+.+.+++.+++.+++.++.
T Consensus 10 ~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~-~gCP~~--~~i~~~v~~al~~~~~v~~v~ 86 (111)
T COG2151 10 IKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTS-PGCPLA--EVIADQVEAALEEIPGVEDVE 86 (111)
T ss_pred hhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCC-CCCCcc--HHHHHHHHHHHHhcCCcceEE
Confidence 456688899999887 331 12333322111 1 1 2333333333 555544 678999999999999898777
Q ss_pred EEeec
Q 022609 271 VHLDY 275 (294)
Q Consensus 271 i~~ep 275 (294)
+++.-
T Consensus 87 V~l~~ 91 (111)
T COG2151 87 VELTL 91 (111)
T ss_pred EEEEE
Confidence 77663
No 69
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=49.38 E-value=85 Score=21.63 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=22.3
Q ss_pred CCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHH
Q 022609 54 INIYKYPIGKLRVQPVGIIIFAAIMATLGFQVL 86 (294)
Q Consensus 54 ~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~ 86 (294)
+...++..+..++|.+-+.+-++++++.++--+
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~pSl 82 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLAFPSL 82 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHhhhc
Confidence 334667788888999999999999888776543
No 70
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=49.38 E-value=47 Score=21.45 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=31.4
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCC--cceEEEEeeccCCC
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPE--VERAFVHLDYECDH 279 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~--v~~v~i~~ep~~~~ 279 (294)
++|.+.++.|.++-+++.+.+.+.+.+..+ ..++++-++....+
T Consensus 4 i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~ 49 (62)
T PRK00745 4 FHIELFEGRTVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKRE 49 (62)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcChH
Confidence 466666677889999999999999965333 34677777754433
No 71
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=49.09 E-value=83 Score=21.41 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
.+....++.+.+.+.. .++.+.+....|+.....+.++.+++ ...++.+.+++.-++
T Consensus 12 rpGiv~~v~~~l~~~g--~ni~d~~~~~~~~~f~~~~~v~~~~~----~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 12 RPGIVAAVTGVLAEHG--CNIEDSRQAVLGGRFTLIMLVSIPED----SLERLESALEELAEE 68 (76)
T ss_dssp -TTHHHHHHHHHHCTT---EEEEEEEEEETTEEEEEEEEEESHH----HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCC--CcEEEEEEEEEcCeEEEEEEEEeCcc----cHHHHHHHHHHHHHH
Confidence 3567899999999986 58999999999999888899999833 334455555444433
No 72
>PRK14640 hypothetical protein; Provisional
Probab=48.54 E-value=1.4e+02 Score=23.76 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
+.+.+...+++. | .++.++...+.|+...+.+.|.-+.+.|+++-.++.+.+...|..
T Consensus 8 i~~li~p~~~~~-G-~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 8 LTDLLEAPVVAL-G-FELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHHHHHhc-C-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 344444445444 3 568889888888877888888877789999999999999999963
No 73
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=47.35 E-value=46 Score=21.79 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=30.3
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCCc--ceEEEEeeccC
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPEV--ERAFVHLDYEC 277 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v--~~v~i~~ep~~ 277 (294)
+++.+.++.|.++-.++.+++.+.+.+..++ .++++-++...
T Consensus 4 v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~ 47 (64)
T PRK01964 4 VQIQLLEGRPEEKIKNLIREVTEAISATLDVPKERVRVIVNEVP 47 (64)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcC
Confidence 4666666778899999999999999653333 46777776543
No 74
>PRK04998 hypothetical protein; Provisional
Probab=46.99 E-value=1e+02 Score=21.90 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHcC-CCcceeeEEEEEEe--CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcc
Q 022609 200 PPEILQKLTYLVIRH-PEVKRIDTVRAYTF--GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVE 267 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~-~~V~~v~~~~~~~~--g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~ 267 (294)
.++..+.|.+.+++. |+. ..++.+.. |....+.+.+.+.+. + -.+.+-+.|++.++|.
T Consensus 25 ~~~~~~~v~~v~~~~~~~~---~~~~~r~S~~GkY~Svtv~v~v~s~---e----q~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 25 RPELVDQVVEVVQRHAPGD---YTPTVKPSSKGNYHSVSITITATSI---E----QVETLYEELAKIEGVR 85 (88)
T ss_pred cHhHHHHHHHHHHHhCCCC---CCceEccCCCCEEEEEEEEEEECCH---H----HHHHHHHHHhcCCCEE
Confidence 567888899988775 321 22444444 444556666666554 3 4677788888878875
No 75
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=46.54 E-value=58 Score=21.07 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=29.8
Q ss_pred EEEEeC-CCCChhHHHHHHHHHHHHHhcCC--CcceEEEEeeccC
Q 022609 236 VDIELP-EELPLKEAHAIGESLQNKIEKLP--EVERAFVHLDYEC 277 (294)
Q Consensus 236 ~~i~v~-~~~~v~~~~~i~~~i~~~l~~~~--~v~~v~i~~ep~~ 277 (294)
++|.+. ++.|.++-+++.+++.+.+.+.. ...+++|.++..+
T Consensus 3 i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~ 47 (63)
T TIGR00013 3 VNIYILKEGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMP 47 (63)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcC
Confidence 344544 67899999999999999996432 2346777777544
No 76
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=45.61 E-value=1.1e+02 Score=24.27 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=26.7
Q ss_pred CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 229 GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 229 g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
|+...+.+.+..+.. ...+.+++.+++.+++. |+.+|.|++.
T Consensus 24 gd~V~VtIt~Ty~gc---pa~e~L~~~I~~aL~~~-Gv~~V~V~i~ 65 (146)
T TIGR02159 24 GGGVVVKFTPTYSGC---PALEVIRQDIRDAVRAL-GVEVVEVSTS 65 (146)
T ss_pred CCEEEEEEEeCCCCC---chHHHHHHHHHHHHHhc-CCCeEEEeEe
Confidence 455444444443322 45578999999999875 7776666655
No 77
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=44.63 E-value=1.2e+02 Score=21.81 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=40.3
Q ss_pred HHHHHHHHHcC-CCcceeeEEEEEEeC-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEE
Q 022609 204 LQKLTYLVIRH-PEVKRIDTVRAYTFG-VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVH 272 (294)
Q Consensus 204 ~~~i~~~i~~~-~~V~~v~~~~~~~~g-~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~ 272 (294)
.+++.+.+++. ++-..+++.+.--.+ +-..+.+.+.++++. . -.+.+++.+++..+|.++.|.
T Consensus 19 le~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~--g----~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 19 LEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAE--G----GTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred HHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCC--c----ChHHHHHHHhcCCCccEEEEE
Confidence 56666666654 333556666666665 345577788775552 1 247788889888898877754
No 78
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.47 E-value=46 Score=24.78 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=27.6
Q ss_pred ChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 245 PLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 245 ~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
+...+..+.+.|++.++.+|-+.++-|++++.
T Consensus 35 s~~~a~~le~aI~esi~~QP~v~daeV~Id~~ 66 (116)
T COG2098 35 SPGTAESLEKAIEESIKVQPFVEDAEVKIDRD 66 (116)
T ss_pred CccchHHHHHHHHHHHhcCCceeeEEEEeccc
Confidence 44567788899999999899999999999987
No 79
>PRK04191 rps3p 30S ribosomal protein S3P; Reviewed
Probab=44.16 E-value=1.1e+02 Score=25.71 Aligned_cols=71 Identities=7% Similarity=-0.054 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
..++++-+.+.-.-..+.++.+.+..+...+.+|.. +|+.-+..-.+-.+++++.+++..+..++.+++++
T Consensus 14 ~~~irefi~~~~~~AgIs~IeI~Rt~~~i~I~I~ta-~PGivIGk~G~~I~klk~~Lkk~~~~~~v~I~v~e 84 (207)
T PRK04191 14 KVMIDEYLAKELYRAGYGGMEIKKTPLGTRITIYAE-RPGMVIGRGGKNIRELTEILEKKFGLENPQIDVKE 84 (207)
T ss_pred HHHHHHHHHhhhhhcceeEEEEEEcCCcEEEEEEEC-CCCeEECCCchhHHHHHHHHHHHhCCCceeEEEEE
Confidence 344555554432224677888888777777777773 34544444444455566666544455456666554
No 80
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=44.11 E-value=99 Score=20.91 Aligned_cols=58 Identities=19% Similarity=0.373 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeC------CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFG------VLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g------~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
.+....+|.+.+.+.. .++.+++....+ +.....+.+.++++.+ ..++.+++++.-++
T Consensus 9 ~~Giv~~it~~l~~~~--~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~---~~~l~~~l~~l~~~ 72 (81)
T cd04869 9 RPGIVHEVTQFLAQRN--INIEDLSTETYSAPMSGTPLFKAQATLALPAGTD---LDALREELEELCDD 72 (81)
T ss_pred CCCHHHHHHHHHHHcC--CCeEEeEeeeecCCCCCcceEEEEEEEecCCCCC---HHHHHHHHHHHHHH
Confidence 3567888999998874 477787776665 4566778888876644 34555555554333
No 81
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.16 E-value=1e+02 Score=20.81 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCC-CC---ChhHHHHHHHHHHHHH
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPE-EL---PLKEAHAIGESLQNKI 260 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~-~~---~v~~~~~i~~~i~~~l 260 (294)
.+.+..++.+.+.+.. .++++.|+.+.|+...-.+++.=++ +. +.++..++.+.+++.+
T Consensus 10 r~gLl~~i~~~l~~~~--lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 10 RPGLLSEVFAVLADLH--CNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred CCCHHHHHHHHHHHCC--CcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 3567899999998875 6899999998877655556655322 32 2234455555554443
No 82
>PRK09577 multidrug efflux protein; Reviewed
Probab=42.70 E-value=2.9e+02 Score=29.35 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHcC-CCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHH-HHHHHHHHHHHhcCC
Q 022609 200 PPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEA-HAIGESLQNKIEKLP 264 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~-~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~-~~i~~~i~~~l~~~~ 264 (294)
|+++.+.|.+-+++. .++.++++++.....+ ...+.++++++.+.+++ +++++++.+.-.+.|
T Consensus 54 p~~VE~~Vt~plE~~L~~v~gv~~i~S~S~~G--~s~I~v~f~~g~d~~~a~~~V~~~v~~~~~~LP 118 (1032)
T PRK09577 54 AQVVEESVTALIEREMNGAPGLLYTSATSSAG--QASLSLTFKQGVNADLAAVEVQNRLKTVEARLP 118 (1032)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEecCC--eEEEEEEEECCCChHHHHHHHHHHHHHHHHhCC
Confidence 444444444444442 3334445555444333 34555555666555544 444444433223455
No 83
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=42.56 E-value=1.2e+02 Score=21.50 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhchhhH---HHHHHHHHHHHHHHHH
Q 022609 143 HYFDVVTNVVGLVAAVLGDSFYWWIDPA---GAILLAVYTITNWSET 186 (294)
Q Consensus 143 ~~~d~~~s~~~~i~~~~~~~~~~~~D~~---~si~i~~~i~~~~~~~ 186 (294)
-..|.+-+.++++++.+.+...+-+||+ +-++.+...++.++..
T Consensus 34 Rd~D~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~ 80 (84)
T PF07444_consen 34 RDYDIFFSSVGLLYGLILWFQGWRLDPILLFGQMLLVGLLIFFGWET 80 (84)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777887776665555678998 4445555555544443
No 84
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=42.40 E-value=66 Score=23.18 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=23.3
Q ss_pred EEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 022609 232 YFVEVDIELPEELPLKEAHAIGESLQNKI 260 (294)
Q Consensus 232 ~~v~~~i~v~~~~~v~~~~~i~~~i~~~l 260 (294)
+.+.+++.++++++.+++++++.+=.+.-
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a~Eka~a 30 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKAREKAYA 30 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999988877544443
No 85
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=42.17 E-value=86 Score=21.96 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCC---ChhHHHHHHHHHHHHH
Q 022609 206 KLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEEL---PLKEAHAIGESLQNKI 260 (294)
Q Consensus 206 ~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~---~v~~~~~i~~~i~~~l 260 (294)
.|++-+++.-.-..+.++.+.+......+.+|..-|.-. .=++.+++.+.+++.+
T Consensus 6 ~Ire~l~k~~~~agis~IeI~Rt~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~ 63 (81)
T cd02413 6 ELNEFLTRELAEDGYSGVEVRVTPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRF 63 (81)
T ss_pred HHHHHHHHHHHhCCeeeEEEEEcCCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHh
Confidence 344444443222468888899887777788777654332 1134455555555555
No 86
>PRK14638 hypothetical protein; Provisional
Probab=41.75 E-value=1.8e+02 Score=23.09 Aligned_cols=56 Identities=7% Similarity=0.147 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCC-CChhHHHHHHHHHHHHHhc
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEE-LPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~-~~v~~~~~i~~~i~~~l~~ 262 (294)
+.+...+.+. | ..+.++...+.|+...+.+.|.-+.+ .++++-.++.+.+.+.|..
T Consensus 12 ~~~~~i~~~~-G-~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 12 KEAERIAEEQ-G-LEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHHHc-C-CEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhcc
Confidence 3344444443 4 57888888888888888888886655 9999999999999999863
No 87
>COG1279 Lysine efflux permease [General function prediction only]
Probab=41.51 E-value=2.1e+02 Score=23.94 Aligned_cols=61 Identities=8% Similarity=-0.137 Sum_probs=43.4
Q ss_pred chhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 022609 133 NKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVS 193 (294)
Q Consensus 133 ~~~l~a~~~~~~~d~~~s~~~~i~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~ 193 (294)
+..+.........|.+.-..++.+.-....-.+|+..++-..=+.++++.++...|++.+.
T Consensus 34 ~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~ 94 (202)
T COG1279 34 EYVLPIALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLYYGLLALKSAPRG 94 (202)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5567777777888876655444433222222678888888888889999999999998884
No 88
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=41.47 E-value=1.2e+02 Score=21.07 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
.-+.+++.+++. |..++.++|+ |+.+.++ ++.+ +-+.+.+.++++.+.+-..|-+++..+.++|
T Consensus 17 ~G~ai~~~l~~l-g~~~v~~Vr~---~k~~~l~----~~~~-~~~~a~~~v~~i~~~lL~Npvie~~~i~~~~ 80 (80)
T PRK05974 17 QGQAIKGALGSL-GYDGVEDVRQ---GKYFELE----LEGE-SEEKAEADLKEMCEKLLANPVIEDYRIEIEE 80 (80)
T ss_pred HHHHHHHHHHHc-CCCCcceEEE---EEEEEEE----EcCC-chhhhHHHHHHHHHHhcCCceeeEEEEEEeC
Confidence 345666777665 4444555554 4444433 2332 1133334455555555444667777776654
No 89
>PRK15031 5-carboxymethyl-2-hydroxymuconate delta-isomerase; Provisional
Probab=40.46 E-value=1.7e+02 Score=22.51 Aligned_cols=76 Identities=13% Similarity=0.220 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEE-------EeCC----eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc-CCCc-
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAY-------TFGV----LYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEV- 266 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~-------~~g~----~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~-~~~v- 266 (294)
.+++.+++.+.+.+. |+....++|+| +.|. .-++.+.+.+-++-|.++-+++.+.+-+.+++ .+.+
T Consensus 18 ~~~Ll~~l~~~l~~s-glF~~~~IK~Ra~~~~~y~vgdg~~~~~Fihv~l~i~~GRs~e~k~~l~~~l~~~l~~~~~~~~ 96 (126)
T PRK15031 18 LPGLFAKVNQALAAT-GIFPLGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFALIKAHFAALM 96 (126)
T ss_pred HHHHHHHHHHHHHhC-CCCCccccEeeeeecCcEEEcCCCCCCcEEEEEeeecCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456688888888774 55666666654 4442 25788888888999999999999999998864 5555
Q ss_pred ----ceEEEEeecc
Q 022609 267 ----ERAFVHLDYE 276 (294)
Q Consensus 267 ----~~v~i~~ep~ 276 (294)
..+++++.-.
T Consensus 97 ~~~~~~LS~Ei~d~ 110 (126)
T PRK15031 97 ESRYLALSFEIEEL 110 (126)
T ss_pred cccceEEEEEEEEc
Confidence 4556665543
No 90
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=40.45 E-value=1.2e+02 Score=21.39 Aligned_cols=41 Identities=27% Similarity=0.482 Sum_probs=26.8
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHh-cCCCcc-eEEEEeecc
Q 022609 234 VEVDIELPEELPLKEAHAIGESLQNKIE-KLPEVE-RAFVHLDYE 276 (294)
Q Consensus 234 v~~~i~v~~~~~v~~~~~i~~~i~~~l~-~~~~v~-~v~i~~ep~ 276 (294)
|++.+.-...++..-.+.+..++.++|+ ++|... +|. +.|.
T Consensus 3 VEi~~dK~~~lp~ga~~AL~~EL~kRl~~~fPd~~~~v~--Vr~~ 45 (81)
T PRK10597 3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVS--VRYA 45 (81)
T ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCccEE--Eeec
Confidence 3344443456676778899999999997 466653 355 4444
No 91
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=39.46 E-value=1e+02 Score=24.03 Aligned_cols=18 Identities=22% Similarity=0.264 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 022609 3 ISNYANIVLLACKIFATI 20 (294)
Q Consensus 3 is~~~~l~~~~~~~~~~~ 20 (294)
+++++|++++++-.+++.
T Consensus 79 ls~v~Nilvsv~~~~~~~ 96 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAG 96 (142)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555554444443
No 92
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=39.35 E-value=2.6e+02 Score=29.79 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHH-HHHHHHHHHHHhcCC
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEA-HAIGESLQNKIEKLP 264 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~-~~i~~~i~~~l~~~~ 264 (294)
.+.+++.+.+++ ++++++.....+.-.+.++.+ ++.+.+++ +++++++.+.-.+.|
T Consensus 73 t~piE~~l~~v~---gv~~i~S~S~~G~s~i~v~f~--~g~d~~~a~~ev~~~i~~~~~~LP 129 (1040)
T PRK10503 73 TAPLERQFGQMS---GLKQMSSQSSGGASVITLQFQ--LTLPLDVAEQEVQAAINAATNLLP 129 (1040)
T ss_pred HHHHHHHhcCCC---CccEEEEEecCCeEEEEEEEE--CCCChHHHHHHHHHHHHHHHHhCC
Confidence 444555554444 455666655554444544444 33333333 445555543323455
No 93
>PRK14630 hypothetical protein; Provisional
Probab=39.00 E-value=1.9e+02 Score=22.70 Aligned_cols=60 Identities=7% Similarity=0.039 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
+++.+.+...+++. | .++.++...+.|+...+.+.+.-+.+.++++-.++.+.+...+..
T Consensus 8 ~~i~~li~~~~~~~-G-~eLvdve~~~~~~~~~lrV~Id~~~gV~idDC~~vSr~i~~~ld~ 67 (143)
T PRK14630 8 SEVYNLIKNVTDRL-G-IEIIEINTFRNRNEGKIQIVLYKKDSFGVDTLCDLHKMILLILEA 67 (143)
T ss_pred HHHHHHHHHHHHHc-C-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 34455666666666 3 578888887777777788888877889999999999999888754
No 94
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=38.82 E-value=2.6e+02 Score=24.14 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCcceeeEEEEE-----EeCC---eEEEEEEEEeCCCCChhHHHHHHHHHHHHHh-cCCCcc--eEEEE
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAY-----TFGV---LYFVEVDIELPEELPLKEAHAIGESLQNKIE-KLPEVE--RAFVH 272 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~-----~~g~---~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~-~~~~v~--~v~i~ 272 (294)
.+++.+.+.++|||.+. ++|+- ..|+ -..+++.+.-.++.+.. -...+|++.++ ..+|+. .+-|-
T Consensus 111 eQ~le~tLs~mDGVi~A-rV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~---~~v~~IK~LV~nSv~gL~YenISVV 186 (246)
T COG4669 111 EQQLEQTLSKMDGVISA-RVHISLPEDDDEGKNALPSSASVFIKYSPDVNLS---IYVSQIKRLVANSVPGLQYENISVV 186 (246)
T ss_pred HHHHHHHHHhcCceEEE-EEEEEcCCCCccCCCCCCceeEEEEEecCCCChh---HhHHHHHHHHHhccCCCchhceEEE
Confidence 56788888889998765 45554 2343 25688888877775443 34455555554 355654 45555
Q ss_pred eeccCCCC
Q 022609 273 LDYECDHK 280 (294)
Q Consensus 273 ~ep~~~~~ 280 (294)
..|..+..
T Consensus 187 l~~~~~~~ 194 (246)
T COG4669 187 LVPASDSD 194 (246)
T ss_pred Eeeccccc
Confidence 66755444
No 95
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=37.98 E-value=2.6e+02 Score=25.80 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCC----hhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELP----LKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~----v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
.+|.+.+.+.|+|....++.....|..-.+.+.++.+++.. ..+...+.+++++.+++..++. ..|++.+
T Consensus 331 ~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~v~~~~ 404 (422)
T TIGR02155 331 TQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVS-MDVHLVE 404 (422)
T ss_pred HHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcE-EEEEEEC
Confidence 67788888888886555665555553324555666554432 2333455677777886554543 4566654
No 96
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=37.94 E-value=1.2e+02 Score=20.00 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 022609 70 GIIIFAAIMATLGFQV---LIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKL 122 (294)
Q Consensus 70 ~~l~~~~~l~~~~~~i---~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 122 (294)
+-++.++.++..|... +.+.+.+.+.+++.+ ..+|.++...++.++.+
T Consensus 6 ~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~-----~t~~~ligG~va~ivGl 56 (59)
T PF11381_consen 6 ALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTD-----KTIWYLIGGAVAVIVGL 56 (59)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCc-----hhHHHHHhHHHHHHHHH
Confidence 3445556666666553 455677888888774 35666666666665543
No 97
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=37.25 E-value=1.4e+02 Score=20.67 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEE
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 271 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i 271 (294)
.|+..+++....++.. .+++.+.+-...+.-...+.+.+.++ +..+.+.++|.+.++|.+|.+
T Consensus 13 ~pGVL~Ri~~lf~rRG--fnI~sl~v~~t~~~~~sriti~v~~~-------~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 13 RPEVLERVLRVVRHRG--FQVCSMNMTQNTDAQNINIELTVASE-------RPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CccHHHHHHHHHhcCC--eeeeeEEeeecCCCCEEEEEEEECCC-------chHHHHHHHHhcCcCeEEEEE
Confidence 4667888888887764 57888877665443345555555433 345667778888888877764
No 98
>PRK09579 multidrug efflux protein; Reviewed
Probab=37.24 E-value=81 Score=33.36 Aligned_cols=72 Identities=7% Similarity=0.047 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEe-CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEe
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTF-GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHL 273 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~-g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ 273 (294)
++..+++++.+++.|++..+ ....... |..-...+.+++..+-+.++.++.++++++.+++.+|+.++....
T Consensus 622 ~~~~~~l~~~l~~~p~~~~~-~~~~~~~~g~g~~~~v~i~i~gg~d~~~L~~~a~~l~~~l~~~~g~~~v~~~~ 694 (1017)
T PRK09579 622 MELLPLVQAKLEEIPGLQIF-GFNLPSLPGTGEGLPFQFVINTANDYESLLQVAQRVKQRAQESGKFAFLDIDL 694 (1017)
T ss_pred HHHHHHHHHHHhcCCCcEEE-eecCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHcCCCcEEeeccc
Confidence 45688888888877775322 1111011 211111344455433356888999999999999999988765443
No 99
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=36.97 E-value=52 Score=34.70 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHcCCCccee----eEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEE
Q 022609 201 PEILQKLTYLVIRHPEVKRI----DTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVH 272 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v----~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~ 272 (294)
.+..+++++.+++.++..-. .+++....|+....++.+++..+ +.++.++.++++++.+++.|++.++...
T Consensus 634 ~~l~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~v~i~G~-d~~~L~~~a~~v~~~l~~~pgv~dv~~~ 708 (1021)
T PF00873_consen 634 DELIDELRQKLKQLPGARVFVFSPPDLRGLGSGPGSSAPIQVEIYGD-DLEELRKAAEKVKAKLAEIPGVTDVRDD 708 (1021)
T ss_dssp HHHHHHHHHHCCTSTSSEEEEEEHCSSCCCCSSSSEEEEEEEECSSS-CHHHHHHHHHHHHHHHHHSTTEEEEEES
T ss_pred HHHHHHHHHhhhhCCCcceeccccccccccccccccceeeeeccCCC-CHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 35577777777777664211 11222223445556666666443 4689999999999999999998766543
No 100
>COG1302 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.89 E-value=2e+02 Score=22.31 Aligned_cols=82 Identities=21% Similarity=0.176 Sum_probs=51.5
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEe-CCeEEEEEEEEeCCCCChh-HHHHHHHHHHHHHhcCCC-
Q 022609 189 ENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTF-GVLYFVEVDIELPEELPLK-EAHAIGESLQNKIEKLPE- 265 (294)
Q Consensus 189 ~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~-g~~~~v~~~i~v~~~~~v~-~~~~i~~~i~~~l~~~~~- 265 (294)
+...++.+.. ....+.+.+.+ +-+++ -+.+++..- ++...+++++.+.=+.++- -++++.++++..++..-+
T Consensus 28 ~ev~Gv~~m~--~~~~~~~~e~l-~~~n~--~kGV~Ve~~~~~~v~VDvyi~v~YGv~IpeVa~~Iq~~V~~~v~~mtgl 102 (131)
T COG1302 28 EEVEGVVGMA--GGFKDGLTEKL-GKENV--TKGVKVEVGEDQSVAVDVYIIVEYGVKIPEVAENIQERVKEEVENMTGL 102 (131)
T ss_pred HHcCCeeecc--chhhhhHHHHh-Ccccc--CCCeEEEecCCCcEEEEEEEEEecCCchHHHHHHHHHHHHHHHHHhhCC
Confidence 3444455432 22667777777 33332 234556663 3458999999988775554 457788888888876544
Q ss_pred -cceEEEEeec
Q 022609 266 -VERAFVHLDY 275 (294)
Q Consensus 266 -v~~v~i~~ep 275 (294)
+..+.||+.-
T Consensus 103 ~v~~VNV~V~g 113 (131)
T COG1302 103 KVVEVNVHVVG 113 (131)
T ss_pred ceEEEEEEEEE
Confidence 4577888774
No 101
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=36.56 E-value=90 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.492 Sum_probs=23.3
Q ss_pred EEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 022609 232 YFVEVDIELPEELPLKEAHAIGESLQNKI 260 (294)
Q Consensus 232 ~~v~~~i~v~~~~~v~~~~~i~~~i~~~l 260 (294)
+.+.+++.++++++.++.++++.+=++..
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a~E~~~a 31 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKAREKARA 31 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 45899999999999999888877655543
No 102
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=35.89 E-value=2.2e+02 Score=26.23 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=50.9
Q ss_pred HHhcchhhhhhhhhhhhhHHHHHHHHHHHHHhhh--------hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 022609 129 KSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDS--------FYWWIDPAGAILLAVYTITNWSETVMENAVSLVG 196 (294)
Q Consensus 129 ~~~~~~~l~a~~~~~~~d~~~s~~~~i~~~~~~~--------~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~ 196 (294)
++.++..+-+++.|.+.|..+=.+.+.+.++... +|.=+|.+++++-...+-.....++.+++..++.
T Consensus 94 ~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s 169 (379)
T KOG1482|consen 94 YKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLS 169 (379)
T ss_pred eeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhc
Confidence 3445778889999999999877766776666532 2555788888877777777777888888888774
No 103
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=35.62 E-value=1.9e+02 Score=22.39 Aligned_cols=65 Identities=11% Similarity=0.109 Sum_probs=42.0
Q ss_pred HHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCc-ceEEEEee
Q 022609 208 TYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEV-ERAFVHLD 274 (294)
Q Consensus 208 ~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v-~~v~i~~e 274 (294)
...+++. | ..+.++...+.|+...+.+.+.-+.+.|+++-.++.+.+...|.....+ .+-++++-
T Consensus 3 ~~~~~~~-g-~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVS 68 (141)
T PF02576_consen 3 EPLLEEL-G-LELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVS 68 (141)
T ss_dssp HHHH-S--S-SEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE
T ss_pred ccchhhc-C-CEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHccccccCcceEEEEe
Confidence 3444444 3 5788999999998888888888788899999999999999999642111 23455554
No 104
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=35.34 E-value=3.5e+02 Score=28.71 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHcC-CCcceeeEEEEEEeCCeEEEEEEEE
Q 022609 200 PPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIE 239 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~-~~V~~v~~~~~~~~g~~~~v~~~i~ 239 (294)
++++.++|.+-+|+- .++.+++++.-....+...+.++..
T Consensus 55 ae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~ 95 (1009)
T COG0841 55 AETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFE 95 (1009)
T ss_pred HHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEe
Confidence 445555555555553 4555566666665554444433333
No 105
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.25 E-value=1.3e+02 Score=19.79 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeC-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcc
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFG-VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVE 267 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g-~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~ 267 (294)
+....++.+.+.+.. .++.++...+.. +...+++.++++.. ++ .+++.+.|++.+||.
T Consensus 10 ~g~L~~i~~~i~~~~--~nI~~v~~~~~~~~~~~~~~~vev~~~---~~----l~~i~~~L~~i~gV~ 68 (74)
T cd04887 10 PGMLGRVTTAIGEAG--GDIGAIDLVEQGRDYTVRDITVDAPSE---EH----AETIVAAVRALPEVK 68 (74)
T ss_pred CchHHHHHHHHHHcC--CcEEEEEEEEecCCEEEEEEEEEcCCH---HH----HHHHHHHHhcCCCeE
Confidence 446888888887764 466777776654 45667888888665 44 344666777777853
No 106
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=35.05 E-value=4e+02 Score=28.36 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHc-CCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHH-HHHHHHHHHHHhcCCC
Q 022609 200 PPEILQKLTYLVIR-HPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEA-HAIGESLQNKIEKLPE 265 (294)
Q Consensus 200 ~~~~~~~i~~~i~~-~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~-~~i~~~i~~~l~~~~~ 265 (294)
|++..+++.+-+++ ..++.++++++.+...+. ...++++++++.+.+++ +++++++.+...+.|+
T Consensus 54 ~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g-~s~i~v~f~~~~d~~~a~~~v~~~l~~~~~~LP~ 120 (1044)
T TIGR00915 54 AQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDG-SMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQ 120 (1044)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCC-eEEEEEEEECCCChHHHHHHHHHHHHHHHhhCCC
Confidence 44555555555543 244555666666543221 23455555556554443 5566666554445663
No 107
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) [, ]. Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds []. The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids []. Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA []. Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050662 coenzyme binding, 0015936 coenzyme A metabolic process, 0055114 oxidation-reduction process; PDB: 2Q6B_C 2Q6C_D 1HWI_C 1HWJ_C 3CD5_B 2R4F_C 1HWL_B 1HWK_C 1DQA_B 3CCT_D ....
Probab=34.31 E-value=3.8e+02 Score=24.80 Aligned_cols=62 Identities=8% Similarity=0.120 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc-CCC
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPE 265 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~-~~~ 265 (294)
.+++++..+....--...+++.+..|+.+++++++...+-|=-.=.....+.+.+.|++ .++
T Consensus 125 ~~~l~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~~dtgDAMGaNmvn~~~e~v~~~i~~~~~~ 187 (373)
T PF00368_consen 125 FEELKEIANSTSRGGGLRDIEVRIVGRFVHLRFHYDTGDAMGANMVNTATEAVCPWIEEQFGG 187 (373)
T ss_dssp HHHHHHHHHHHCCTEEEEEEEEEECSTEEEEEEEEEETTC--HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhhhcCCceeeeEEEEEecCCEEEEEEEEEccccchhhHHHHHHHHHHHHHHHhccc
Confidence 34444444444333567788887789999999999998877666677777777777764 444
No 108
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=34.30 E-value=71 Score=22.24 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
.|+..+++++.+.++||+ ++| ...-.+++.+ .++-+.. .++.+.+ +.|+..|||..+......
T Consensus 13 ~p~~~~~v~~~l~~~~gv-EVh---~~~~~GKiVV--tiE~~~~------~~~~~~~-~~i~~l~GVlsa~lvYh~ 75 (79)
T PF03927_consen 13 RPERLEEVAEALAAIPGV-EVH---AVDEDGKIVV--TIEAESS------EEEVDLI-DAINALPGVLSASLVYHY 75 (79)
T ss_dssp -CCCHHHHHHHHCCSTTE-EEE---EEETTTEEEE--EEEESSH------HHHHHHH-HHHCCSTTEEEEEESSEE
T ss_pred CchhHHHHHHHHHcCCCc-EEE---eeCCCCeEEE--EEEeCCh------HHHHHHH-HHHHcCCCceEEEEEEEE
Confidence 456789999999999986 443 3333234333 3333222 3333333 558889999888765554
No 109
>PRK14641 hypothetical protein; Provisional
Probab=34.24 E-value=2.6e+02 Score=22.81 Aligned_cols=44 Identities=9% Similarity=0.137 Sum_probs=37.5
Q ss_pred ceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHh
Q 022609 218 KRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE 261 (294)
Q Consensus 218 ~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~ 261 (294)
..+.++.+.+.|+...+.+.|.-+.+.++++-.++.+.|.+.|.
T Consensus 24 ~eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD 67 (173)
T PRK14641 24 VYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLE 67 (173)
T ss_pred eEEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 45778888888888888888887778999999999999999995
No 110
>PRK09579 multidrug efflux protein; Reviewed
Probab=33.98 E-value=3.5e+02 Score=28.74 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHHcC-CCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHH-HHHHHHHHHHHhcCCC
Q 022609 200 PPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEA-HAIGESLQNKIEKLPE 265 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~-~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~-~~i~~~i~~~l~~~~~ 265 (294)
|+++.+.|.+-+++. .++.++++++-....+.-. +.++++.+.+.+++ +++++++.+.-.+.|.
T Consensus 56 pe~vE~~Vt~plE~~L~~v~gi~~i~S~S~~G~s~--I~v~f~~g~d~~~a~~~v~~~v~~v~~~LP~ 121 (1017)
T PRK09579 56 AETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSI--ISIYARIGADSDRLFTELLAKANEVKNQLPQ 121 (1017)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEE--EEEEEECCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 444444444444442 3444555665554444333 44445555554544 4555554332224553
No 111
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=33.88 E-value=3.2e+02 Score=29.10 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHcC-CCcceeeEEEEEEe-CCeEEEEEEEEeCCCCChhHH-HHHHHHHHHHHhcCC
Q 022609 200 PPEILQKLTYLVIRH-PEVKRIDTVRAYTF-GVLYFVEVDIELPEELPLKEA-HAIGESLQNKIEKLP 264 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~-~~V~~v~~~~~~~~-g~~~~v~~~i~v~~~~~v~~~-~~i~~~i~~~l~~~~ 264 (294)
|+++.+.|.+-+++. .++.++++++-... .+.-.+. ++++++.+.+++ +++++++.+.-.+.|
T Consensus 54 p~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~--v~f~~g~d~~~a~~~V~~~v~~~~~~LP 119 (1037)
T PRK10555 54 AQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVT--LSFKAGTDPDEAVQQVQNQLQSAMRKLP 119 (1037)
T ss_pred HHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEE--EEEECCCCHHHHHHHHHHHHHHHHHhCC
Confidence 455555544444442 44445556665543 2233333 334444444443 555555544333566
No 112
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.81 E-value=44 Score=21.48 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCcceEEEEee
Q 022609 251 AIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 251 ~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
.-++++++.|++.+||.++.+.++
T Consensus 11 ~C~~~v~~~l~~~~GV~~v~vd~~ 34 (62)
T PF00403_consen 11 GCAKKVEKALSKLPGVKSVKVDLE 34 (62)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEETT
T ss_pred HHHHHHHHHHhcCCCCcEEEEECC
Confidence 457889999999999987765443
No 113
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=33.75 E-value=1.2e+02 Score=32.20 Aligned_cols=71 Identities=11% Similarity=0.010 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCCccee--eEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEE
Q 022609 202 EILQKLTYLVIRHPEVKRI--DTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVH 272 (294)
Q Consensus 202 ~~~~~i~~~i~~~~~V~~v--~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~ 272 (294)
+..+++++.+.+.|+...+ ..-..-..|...-+++.+.=+.+-+.++..+.++++++.+++.|++.+++..
T Consensus 646 ~i~~~~~~~l~~~p~~~~~~~~~~~~~~~g~~~~i~i~l~g~~G~d~~~L~~~a~~l~~~l~~~pg~~~v~~~ 718 (1044)
T TIGR00915 646 AIAGRATGHFSQIKDAMVIAFNPPAILELGNATGFDFFLQDRAGLGHEALMQARNQLLGLAAQNPALTRVRPN 718 (1044)
T ss_pred HHHHHHHHHHhcCCCceeeeecCCCCCCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCeEEeecc
Confidence 4567777777777664311 1000001122222344443222345688899999999999999998877543
No 114
>PRK14633 hypothetical protein; Provisional
Probab=33.70 E-value=2.4e+02 Score=22.30 Aligned_cols=58 Identities=3% Similarity=0.109 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 202 EILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 202 ~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
++.+.+...+++. | .++.++...+.|+ ..+.+.|.-+.+.|+++-.++.+.+...|..
T Consensus 5 ~i~~lv~p~~~~~-G-~eL~dve~~~~~~-~~lrV~ID~~~Gv~lddC~~vSr~i~~~LD~ 62 (150)
T PRK14633 5 DLYEIVEPITADL-G-YILWGIEVVGSGK-LTIRIFIDHENGVSVDDCQIVSKEISAVFDV 62 (150)
T ss_pred HHHHHHHHHHHHC-C-CEEEEEEEEeCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 3445555555555 3 5677888776666 4778888777889999999999999999964
No 115
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=33.63 E-value=74 Score=22.85 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=29.0
Q ss_pred EEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 233 FVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 233 ~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
.+.+++.+|.-.|+++=-++.+.+..++++.++++ ..++++.
T Consensus 4 ~l~l~l~lp~~~SLKeKR~vvksl~~klr~rfnvS--vaEv~~~ 45 (90)
T PF04456_consen 4 VLRLELRLPGAHSLKEKRQVVKSLIDKLRNRFNVS--VAEVGHQ 45 (90)
T ss_dssp EEEEEEE----SSHHHHHHHHHHHHHHHHHHSS-E--EEEEE-T
T ss_pred EEEEEEEeccccchhHhHHHHHHHHHHHHhhCCeE--EEEecCC
Confidence 35678888888999999999999999999877875 4455554
No 116
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.47 E-value=1.6e+02 Score=20.09 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCC---hhHHHHHHHHHHHHH
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELP---LKEAHAIGESLQNKI 260 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~---v~~~~~i~~~i~~~l 260 (294)
+.+..++.+.+.+.. .+|++.|+.+..+...++.....+++-. .++.+++.+.+++.+
T Consensus 11 ~gLfa~i~~~l~~~~--l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 11 KGLLHDVTEVLYELE--LTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL 71 (76)
T ss_pred CCHHHHHHHHHHHCC--CeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 567888999998875 6899999987433345554444454422 233344444444444
No 117
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=33.40 E-value=5.2e+02 Score=26.37 Aligned_cols=56 Identities=4% Similarity=-0.085 Sum_probs=30.9
Q ss_pred EEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcC-CCcceEEEEeeccC
Q 022609 222 TVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKL-PEVERAFVHLDYEC 277 (294)
Q Consensus 222 ~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~-~~v~~v~i~~ep~~ 277 (294)
.+.+...|+ ...+.+.+.++++.--.-..++.+++++.+++. -.+-+-++|+.+.+
T Consensus 669 ~vgV~~lgdSsi~lrvr~~t~p~~qw~v~rel~~~IK~~Fde~GIeIP~~tv~v~~~~ 726 (741)
T PRK11465 669 FAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLAGVRAPVQTYQVLPAP 726 (741)
T ss_pred eEEEEEecCceEEEEEEEEECcchHHHHHHHHHHHHHHHHHHCCCCCCCCceEeecCC
Confidence 355667776 466777777766633333355666777777431 12224455665543
No 118
>KOG4496 consensus Predicted coiled-coil protein [Function unknown]
Probab=33.30 E-value=70 Score=25.23 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=33.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCCcceEEEEeeccCCCCCccc-ccCCCCCCCC
Q 022609 244 LPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHT-VLNKLPSSQP 294 (294)
Q Consensus 244 ~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~~~~~~~~-~~~~~p~~~~ 294 (294)
..++++++..+-+..++...|+-.++|+..-|-+.-.+++. .-.+.||+||
T Consensus 55 lridq~d~kLnildaKLa~ipg~Dd~Ttat~pln~ta~e~~eaH~ea~Seqp 106 (194)
T KOG4496|consen 55 LRIDQADRKLNILDAKLAGIPGEDDSTTATPPLNSTAPEIDEAHEEAPSEQP 106 (194)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcCccccccCCcccCCCcccccCcCCCccch
Confidence 34567777777888888888888899988877554333332 3334455554
No 119
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=33.22 E-value=3.3e+02 Score=23.68 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCCcceeeEEEEE-------EeCCeEEEEEEEEeCCCCChhHHH-HHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAY-------TFGVLYFVEVDIELPEELPLKEAH-AIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~-------~~g~~~~v~~~i~v~~~~~v~~~~-~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
.++.+.+++.+||.+. ++|+. +....-.+++-+...++.+.++.+ .|++-+...+.+. ...+|+|-..|.
T Consensus 110 gELarTI~~idgV~~A-rVhL~lP~~~~~~~~~~asASV~I~~~~~~~~~~~~v~I~~LVA~SV~gL-~~enVTVvd~~~ 187 (249)
T PRK15348 110 QRIEGMLSQMEGVINA-KVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGL-QYSKISILMQPA 187 (249)
T ss_pred HHHHHHHHhCCCeeEe-EEEEECCCCCcccCCCCccEEEEEEeCCCCChHHHHHHHHHHHHHhcCCC-CccceEEEecCC
Confidence 5678888888887654 22221 111234578888888887776554 4555555554432 124778777775
Q ss_pred C
Q 022609 277 C 277 (294)
Q Consensus 277 ~ 277 (294)
.
T Consensus 188 ~ 188 (249)
T PRK15348 188 E 188 (249)
T ss_pred c
Confidence 4
No 120
>COG3518 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.16 E-value=55 Score=26.24 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHHHHHhc-CCCcceEEEEeeccCCCC
Q 022609 245 PLKEAHAIGESLQNKIEK-LPEVERAFVHLDYECDHK 280 (294)
Q Consensus 245 ~v~~~~~i~~~i~~~l~~-~~~v~~v~i~~ep~~~~~ 280 (294)
+..+.+++++.|++.|.+ .|.+.+|.++.+|...+.
T Consensus 82 ~~~~~~~i~r~I~~~Ie~fEPRL~~V~v~~~~~~~~~ 118 (157)
T COG3518 82 LFRDSHQIARAIRAAIERFEPRLSRVEVQLLPGRGDP 118 (157)
T ss_pred ccccHHHHHHHHHHHHHHhCchhhheeeeeccCCCCc
Confidence 346778999999999975 688999999999976663
No 121
>PRK14645 hypothetical protein; Provisional
Probab=33.05 E-value=2.5e+02 Score=22.35 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeC--CCCChhHHHHHHHHHHHHHhc
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELP--EELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~--~~~~v~~~~~i~~~i~~~l~~ 262 (294)
+.+.+...+++. | ..+.++.+.+.|+...+.+.|.-+ .+.++++-.++.+.+.+.|..
T Consensus 11 i~~li~~~~~~~-G-~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~ 70 (154)
T PRK14645 11 LQQLAEGALEPL-G-YEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDR 70 (154)
T ss_pred HHHHHHHHHHHc-C-CEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcc
Confidence 344455555555 4 678899988888877788888753 249999999999999999964
No 122
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=32.61 E-value=3.6e+02 Score=28.72 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHcC-CCcceeeEEEEEEe-CCeEEEEEEEEeCCCCChhHH-HHHHHHHHHHHhcCC
Q 022609 199 APPEILQKLTYLVIRH-PEVKRIDTVRAYTF-GVLYFVEVDIELPEELPLKEA-HAIGESLQNKIEKLP 264 (294)
Q Consensus 199 ~~~~~~~~i~~~i~~~-~~V~~v~~~~~~~~-g~~~~v~~~i~v~~~~~v~~~-~~i~~~i~~~l~~~~ 264 (294)
.|+++.+.|.+-+++. .++.++++++-... .+.-.+. ++++++.+.+++ +++++++.+.-.++|
T Consensus 53 sp~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s~I~--v~f~~g~d~~~a~~~V~~~i~~~~~~LP 119 (1049)
T PRK15127 53 DAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQIT--LTFESGTDADIAQVQVQNKLQLAMPLLP 119 (1049)
T ss_pred CHHHHHHHhhHHHHHHhcCCCCceEEEEEecCCceEEEE--EEEECCCChHHHHHHHHHHHHHHHhhCC
Confidence 3566666666666553 45556666666553 2233333 333444444444 455555544333566
No 123
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=32.49 E-value=68 Score=25.59 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=28.6
Q ss_pred CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccC
Q 022609 230 VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 277 (294)
Q Consensus 230 ~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~ 277 (294)
++.+.++.+.+|+.+.-. ..++++.+++.+++ |=.+++|++++..
T Consensus 27 N~R~Ldi~~rlP~~l~~l-E~~ir~~i~~~l~R--GkV~v~i~~~~~~ 71 (159)
T PF03755_consen 27 NHRFLDISIRLPRELSSL-EPEIRKLIRKKLSR--GKVEVSIRVERSS 71 (159)
T ss_pred ccCceeeEEeCCHHHHHH-HHHHHHHHHHhccc--ceEEEEEEEEECc
Confidence 345678888888775422 25556666666643 5457888888764
No 124
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.43 E-value=1.6e+02 Score=19.90 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKI 260 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l 260 (294)
+.+..++...+.+.. .+|++.++.+..+.+.++.-...+++- ++...+.+++++.+
T Consensus 12 ~gLFa~iag~L~~~~--LnI~~A~i~tt~dG~~LDtF~V~d~~~--~~~~~~~~~~~~~~ 67 (68)
T cd04928 12 PKLLSQLSSLLGDLG--LNIAEAHAFSTDDGLALDIFVVTGWKR--GETAALGHALQKEI 67 (68)
T ss_pred cchHHHHHHHHHHCC--CceEEEEEEEcCCCeEEEEEEEecCCc--cchHHHHHHHHHhh
Confidence 566888888888864 689999999888777877766666553 55566666666654
No 125
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=32.27 E-value=1.4e+02 Score=19.16 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHh
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE 261 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~ 261 (294)
+....++.+.+.+.. .++.++++...++.....+++.-+++.... .+..+++++.|+
T Consensus 11 ~g~l~~i~~~l~~~~--~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~l~~~l~ 67 (70)
T cd04873 11 PGLLADITRVLADLG--LNIHDARISTTGERALDVFYVTDSDGRPLD--PERIARLEEALE 67 (70)
T ss_pred CCHHHHHHHHHHHCC--CeEEEEEEeecCCEEEEEEEEECCCCCcCC--HHHHHHHHHHHH
Confidence 457888999998875 578888887776655566666655443222 234445555553
No 126
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=32.12 E-value=1.9e+02 Score=20.68 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=38.8
Q ss_pred HHHHHHHHHcC-CCcceeeEEEEEEeC-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEE
Q 022609 204 LQKLTYLVIRH-PEVKRIDTVRAYTFG-VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVH 272 (294)
Q Consensus 204 ~~~i~~~i~~~-~~V~~v~~~~~~~~g-~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~ 272 (294)
.+++.+.+++. ++-......+..-.+ +-..+.+.+.++++ . . -.+.+++.+++..+|.++.|.
T Consensus 19 l~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~-~-~----~td~lee~i~~~e~Vqsvei~ 83 (88)
T PRK00435 19 LDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDE-E-G----GTEPVEEAFANVEGVESVEVE 83 (88)
T ss_pred HHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcC-C-c----CcHHHHHHHhccCCCcEEEEE
Confidence 56666666554 333456666666666 33446666766544 1 1 246788888888888877764
No 127
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=31.52 E-value=62 Score=20.50 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=18.6
Q ss_pred CCCCCCcchHHhHHHHHHHHHHHHHHHHHH
Q 022609 57 YKYPIGKLRVQPVGIIIFAAIMATLGFQVL 86 (294)
Q Consensus 57 ~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~ 86 (294)
..|-|-|+.+. +++++.+.++..+|+.++
T Consensus 5 ~pF~YDy~tLr-igGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 5 DPFYYDYETLR-IGGLIFAGVLFILGILII 33 (50)
T ss_dssp SGGGGCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCccchhHhh-ccchHHHHHHHHHHHHHH
Confidence 44555666543 567777777777777654
No 128
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.45 E-value=1.6e+02 Score=28.50 Aligned_cols=63 Identities=25% Similarity=0.274 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHh---cCCCcceEEEE
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE---KLPEVERAFVH 272 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~---~~~~v~~v~i~ 272 (294)
.+++.+...+.+||. +....+.|+.+-|-+. |+..+-.++..++++|.++|+ .+||-..|||-
T Consensus 439 l~~le~i~~~~~gv~---~~~aiqaGreirv~v~---~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 504 (514)
T TIGR03319 439 LEKLEEIANSFEGVE---KSYAIQAGREIRVMVK---PEKISDDQAVVLARDIAKKIEEELEYPGQIKVTVI 504 (514)
T ss_pred HHHHHHHHHhCCCch---hhhhhhcCcEEEEEec---CCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 445667777777655 4455677886554443 334677899999999999995 47886667764
No 129
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=31.37 E-value=48 Score=34.15 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHcCCCcce-ee---EEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEE
Q 022609 201 PEILQKLTYLVIRHPEVKR-ID---TVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVH 272 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~-v~---~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~ 272 (294)
++..+++++.+++.||+.. .. +.|+-..=....-++-|.+-.+ ++++.+++++++++.++..||..++.++
T Consensus 633 ~~lie~l~~~~~~lpG~~~~~tqPI~~R~delltGVrsdvaIKvfG~-Dl~~L~~la~qI~~~lk~v~Ga~dv~~E 707 (1027)
T COG3696 633 DELIEELRKTLEQLPGLANSFTQPIRMRIDELLTGVRSDLAIKVFGD-DLAELNELAEQIEEVLKTVPGAVDVLAE 707 (1027)
T ss_pred HHHHHHHHHHHHhCCCcccccccchhHHHHHHHhccccceEEEEeCC-CHHHHHHHHHHHHHHHhcCcchhhheee
Confidence 4668899999999998632 21 1122111112334455555333 4599999999999999999998776543
No 130
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.19 E-value=1.6e+02 Score=19.62 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKI 260 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l 260 (294)
+....++.+.+.+.. .+|++.++...++.....+++.-+++.+. +. +..+++++.|
T Consensus 12 ~Gll~~i~~~l~~~~--lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~-~~~~~l~~~l 67 (72)
T cd04926 12 VGLLSDVTRVFRENG--LTVTRAEISTQGDMAVNVFYVTDANGNPV-DP-KTIEAVRQEI 67 (72)
T ss_pred cCHHHHHHHHHHHCC--cEEEEEEEecCCCeEEEEEEEECCCCCcC-CH-HHHHHHHHHh
Confidence 456888889898875 57888888766665556666653333333 22 3455666665
No 131
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.94 E-value=1.6e+02 Score=19.56 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEE--EeCCeEEEEEEEEeCCC-CChhHHHHHHHHHH
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAY--TFGVLYFVEVDIELPEE-LPLKEAHAIGESLQ 257 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~--~~g~~~~v~~~i~v~~~-~~v~~~~~i~~~i~ 257 (294)
.+.++.+|.+.+.+.. .++.+++.. ..+...+..+.+..|+. .+..+..+--+++.
T Consensus 9 ~~Giv~~it~~l~~~g--~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 9 RPGIVAAVSGFLAEHG--GNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred CCCHHHHHHHHHHHcC--CCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3567999999998875 366677666 34456677888888764 45554443333333
No 132
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.93 E-value=1.9e+02 Score=20.15 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCC-CCChhHHHHHHHHHHHHH
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPE-ELPLKEAHAIGESLQNKI 260 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~-~~~v~~~~~i~~~i~~~l 260 (294)
.+.++.++.+.+.+.. .++.+++....++.....+.+..++ +.++ .++.+.+++.-
T Consensus 11 ~pGiva~vt~~la~~g--~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~---~~L~~~l~~l~ 67 (88)
T cd04872 11 RVGIVAGVSTKLAELN--VNILDISQTIMDGYFTMIMIVDISESNLDF---AELQEELEELG 67 (88)
T ss_pred CCCHHHHHHHHHHHcC--CCEEechhHhhCCccEEEEEEEeCCCCCCH---HHHHHHHHHHH
Confidence 3567899999998875 3566666555677777888888876 4443 34555554433
No 133
>PRK00106 hypothetical protein; Provisional
Probab=30.92 E-value=80 Score=30.71 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCC-CChhHHHHHHHHHHHHHh---cCCCcceEEEE
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEE-LPLKEAHAIGESLQNKIE---KLPEVERAFVH 272 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~-~~v~~~~~i~~~i~~~l~---~~~~v~~v~i~ 272 (294)
.+++.+...+.+||.. ....+.|+.+-|-+ +|+ .+-.++..++++|.++|+ .+||-..|||-
T Consensus 460 l~~lE~ia~~~~gV~~---~yaiqaGREiRviV----~p~~v~D~~~~~la~~ia~~Ie~~~~yPG~ikvtvi 525 (535)
T PRK00106 460 LRDLEEIANSFDGVQN---SFALQAGREIRIMV----QPEKISDDQVTILAHKVREKIENNLDYPGNIKVTVI 525 (535)
T ss_pred HHHHHHHHhcCCcHHH---HHHHhcCCeEEEEe----cCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 5667777777787654 44556688654433 444 666889999999999995 47886666654
No 134
>PRK14639 hypothetical protein; Provisional
Probab=30.73 E-value=2.6e+02 Score=21.82 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=46.0
Q ss_pred HHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCc-ceEEEEee
Q 022609 209 YLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEV-ERAFVHLD 274 (294)
Q Consensus 209 ~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v-~~v~i~~e 274 (294)
..+++. | ..+.++...+.|+...+.+.|.-+.+.++++-.++.+.+.+.|.....+ ..-++++-
T Consensus 5 p~~~~~-G-~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVS 69 (140)
T PRK14639 5 ALCKEC-G-VSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVS 69 (140)
T ss_pred HhHHhC-C-CEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEe
Confidence 344444 3 5677888888888888888888778899999999999999999642222 23355554
No 135
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=30.34 E-value=1.2e+02 Score=22.76 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.1
Q ss_pred CCcceeeEEEEEEeCCeEEEEEEEEeCC
Q 022609 215 PEVKRIDTVRAYTFGVLYFVEVDIELPE 242 (294)
Q Consensus 215 ~~V~~v~~~~~~~~g~~~~v~~~i~v~~ 242 (294)
.|-..+.+.++++.|+.+++++.+.+++
T Consensus 27 ~g~i~v~~~~~~~~gd~L~V~m~idl~~ 54 (115)
T PF12984_consen 27 TGQIKVTNVSVEKQGDSLHVDMDIDLSG 54 (115)
T ss_pred CCcEEEEeeEEEEECCEEEEEEEEEecc
Confidence 4557889999999999999999999854
No 136
>PLN02788 phenylalanine-tRNA synthetase
Probab=29.98 E-value=2.1e+02 Score=26.74 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCC--cceeeEEEEEEe--CCeEEEEEEEE---eCCCCChhHHHHHHHHHHHHHhcCCCc
Q 022609 204 LQKLTYLVIRHPE--VKRIDTVRAYTF--GVLYFVEVDIE---LPEELPLKEAHAIGESLQNKIEKLPEV 266 (294)
Q Consensus 204 ~~~i~~~i~~~~~--V~~v~~~~~~~~--g~~~~v~~~i~---v~~~~~v~~~~~i~~~i~~~l~~~~~v 266 (294)
.+++.+.+++..+ +.++.=+-..+- .++..+...+. .+.++|-+|++++.+++.+.+++..++
T Consensus 330 ~~~i~~~Ir~~~g~lle~V~lfD~Y~g~k~GkkSl~~Rl~yrs~erTLTdeEIn~i~~kI~~~L~~klgv 399 (402)
T PLN02788 330 ENNLCEVVRGIAGDLVEEVKLIDNFTNPKKGKTSHCYRIVYRSMERSLTDEEINALQDKVREEVQKKLGV 399 (402)
T ss_pred HHHHHHHHHHhCcCeEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 5556666665422 344433333331 12344444444 366789999999999999999765554
No 137
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=29.97 E-value=4.4e+02 Score=27.97 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHH-HHHHHHHHHHHhcCC
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEA-HAIGESLQNKIEKLP 264 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~-~~i~~~i~~~l~~~~ 264 (294)
.+.+++.+.+++||+ +++.....+...+.++ ++++.+.+++ +++++++.+.-.+.|
T Consensus 64 t~piE~~l~~i~gv~---~i~S~s~~G~s~i~l~--f~~~~d~~~a~~~v~~~v~~~~~~LP 120 (1025)
T PRK10614 64 ATPLERSLGRIAGVN---EMTSSSSLGSTRIILQ--FDFDRDINGAARDVQAAINAAQSLLP 120 (1025)
T ss_pred HHHHHHHhcCCCCce---EEEEEecCCeEEEEEE--EECCCChHHHHHHHHHHHHHHHhhCC
Confidence 344555555555544 4444433334334444 4444444433 444445443323455
No 138
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=29.74 E-value=1.3e+02 Score=32.02 Aligned_cols=44 Identities=9% Similarity=0.118 Sum_probs=36.5
Q ss_pred eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 231 LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 231 ~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
.-.+.++++.+++.++++.++..+++++.+++.|++.+++..+.
T Consensus 567 ~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~~~~~G 610 (1040)
T PRK10503 567 NGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVG 610 (1040)
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEEEec
Confidence 44578899999999999999999999999987777777665543
No 139
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=29.63 E-value=2.8e+02 Score=21.76 Aligned_cols=79 Identities=9% Similarity=-0.007 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCCCC----ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 022609 185 ETVMENAVSLVGQSA----PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKI 260 (294)
Q Consensus 185 ~~~~~~~~~Ll~~~~----~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l 260 (294)
.-++++...|.+... .++..+.|.+.+.+. + ....++++.-.++...++- .++. +..++++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~-~~~~~i~V~v~~G~v~l~G--~v~s-------~~~~~~~~~aa 73 (147)
T PRK11198 5 SFVKEAGEKLFDAVTAQADNEDAADALKEHISKQ-G-LGDADVNVQVEDGKATVSG--DAAS-------QEAKEKILLAV 73 (147)
T ss_pred HHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhc-C-CCcCCceEEEeCCEEEEEE--EeCC-------HHHHHHHHHHh
Confidence 346788888887532 345577788877764 3 2444455555555555443 3332 23455666666
Q ss_pred hcCCCcceEEEEee
Q 022609 261 EKLPEVERAFVHLD 274 (294)
Q Consensus 261 ~~~~~v~~v~i~~e 274 (294)
.+.+|+.+|.-+.+
T Consensus 74 ~~v~GV~~V~d~l~ 87 (147)
T PRK11198 74 GNIQGIASVDDQVK 87 (147)
T ss_pred ccCCCcceecccce
Confidence 67889888876655
No 140
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=29.60 E-value=1.4e+02 Score=28.10 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHh---cCCCcc
Q 022609 191 AVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE---KLPEVE 267 (294)
Q Consensus 191 ~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~---~~~~v~ 267 (294)
.+...+.-|..-..+++|+..++...|.+|.=+|=+..|.. -..+.|... +.+|+++ ....++ -+||-
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s-~gcCFv~~~---trk~a~~----a~~Alhn~ktlpG~- 105 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQS-KGCCFVKYY---TRKEADE----AINALHNQKTLPGM- 105 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcc-cceEEEEec---cHHHHHH----HHHHhhcccccCCC-
Confidence 34445543333337889999999988888887777766642 122223332 3355444 444554 36665
Q ss_pred eEEEEeeccCCCCCcc
Q 022609 268 RAFVHLDYECDHKPEH 283 (294)
Q Consensus 268 ~v~i~~ep~~~~~~~~ 283 (294)
+--|++.|.+.++.++
T Consensus 106 ~~pvqvk~Ad~E~er~ 121 (510)
T KOG0144|consen 106 HHPVQVKYADGERERI 121 (510)
T ss_pred Ccceeecccchhhhcc
Confidence 4578888888777665
No 141
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=29.30 E-value=1e+02 Score=22.20 Aligned_cols=70 Identities=16% Similarity=0.074 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHcC-CCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccCCC
Q 022609 201 PEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDH 279 (294)
Q Consensus 201 ~~~~~~i~~~i~~~-~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~~~ 279 (294)
....+.+++++++- -+ .++++. .-+-+++...+++++.|.+++.+.+++.+.+...+. .=..++|...+
T Consensus 14 ~r~~~Av~~Al~spLl~-~~i~~A--------~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii-~G~~id~~l~d 83 (95)
T PF12327_consen 14 NRAEEAVEQALNSPLLD-VDIKGA--------KGVLVNITGGPDLSLSEVNEAMEIIREKADPDANII-WGASIDEELED 83 (95)
T ss_dssp THHHHHHHHHHTSTTST-S-GGG---------SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEE-EEEEE-TTGTT
T ss_pred cHHHHHHHHHHhCcccc-CChHHh--------ceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEE-EEEEECCCCCC
Confidence 34577777777652 12 233222 234566778899999999999999999996433332 11235555444
Q ss_pred C
Q 022609 280 K 280 (294)
Q Consensus 280 ~ 280 (294)
+
T Consensus 84 ~ 84 (95)
T PF12327_consen 84 E 84 (95)
T ss_dssp E
T ss_pred e
Confidence 3
No 142
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=29.08 E-value=79 Score=20.52 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEE
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 271 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i 271 (294)
+....++.+.+.+.. .++..+..+..++.....++++++ ..+++.+++++.+++.+|.+
T Consensus 10 ~g~l~~i~~~l~~~~--~nI~~~~~~~~~~~a~~~~~~~~~----------~l~~li~~l~~~~~V~~v~~ 68 (69)
T cd04901 10 PGVLGQINTILAEHN--INIAAQYLQTRGEIGYVVIDIDSE----------VSEELLEALRAIPGTIRVRL 68 (69)
T ss_pred CcHHHHHHHHHHHcC--CCHHHHhccCCCCEEEEEEEcCCC----------CCHHHHHHHHcCCCeEEEEE
Confidence 446777777776653 345444443333333344444443 23466677777888877753
No 143
>PRK14632 hypothetical protein; Provisional
Probab=28.98 E-value=3.2e+02 Score=22.21 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
.+.+...+++. | .++.++.... |+...+.+.|.=+.+.|+++-.++.+.+...|..
T Consensus 11 ~~li~pv~~~~-G-~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~ 66 (172)
T PRK14632 11 ADMAGPFLASL-G-LELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEV 66 (172)
T ss_pred HHHHHHHHHHC-C-CEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 33444444444 3 5677777654 6667788888877789999999999999999964
No 144
>PRK12704 phosphodiesterase; Provisional
Probab=28.31 E-value=97 Score=30.06 Aligned_cols=63 Identities=21% Similarity=0.173 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCC-CChhHHHHHHHHHHHHHh---cCCCcceEEEEe
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEE-LPLKEAHAIGESLQNKIE---KLPEVERAFVHL 273 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~-~~v~~~~~i~~~i~~~l~---~~~~v~~v~i~~ 273 (294)
.+++.+...+.+||.... ..+.|+.+-| .|+|+ .+-.++..++++|.++|+ .+||-..|||-=
T Consensus 445 l~~le~i~~~~~gv~~~y---aiqaGreirv----~v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvir 511 (520)
T PRK12704 445 LEKLEEIANSFEGVEKAY---AIQAGREIRV----IVKPDKVDDLQAVRLARDIAKKIEEELQYPGQIKVTVIR 511 (520)
T ss_pred HHHHHHHHHhCCcHHHHH---HHhcCceEEE----EeCCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEEe
Confidence 556666777777766544 4466875444 34444 666899999999999995 478866677643
No 145
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=28.25 E-value=1.8e+02 Score=19.23 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=30.6
Q ss_pred HHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 206 KLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 206 ~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
+|.+.+.++|+|.++--+-+..-...-.+-+.+.. +..++.+.+++.+..
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-------~~~~i~~~~~~~l~~ 50 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-------DEEEIRDHLRDKLPP 50 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-------HHHHHHHHHHHHS-G
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-------eecccccchhhhCCC
Confidence 47888999999877765555433222223333333 338888888888854
No 146
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.69 E-value=3.6e+02 Score=22.40 Aligned_cols=17 Identities=6% Similarity=-0.130 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 022609 116 GATVVKLALWIYCKSSG 132 (294)
Q Consensus 116 ~~~~v~~~~~~~~~~~~ 132 (294)
++.+.-..-++++||.+
T Consensus 186 ig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 186 IGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34333334455555543
No 147
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=27.22 E-value=1.9e+02 Score=24.90 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
+++.++.+.+ ..+.++|+|..|+. +.|+++++- ..+.-+..+.|.+.+++. |..+||+.++..
T Consensus 187 v~~~E~~l~~----~g~~~~rvr~~~~~----a~ie~~~~~-~~~~~~~~~~i~~~~~~~-gf~~v~ldl~g~ 249 (252)
T TIGR00268 187 VDEAEEVLRN----AGVGQVRVRNYDNL----AVIEVPEDE-LSKLLNEAEEVRDKFKDI-GFRKVLIDLEGY 249 (252)
T ss_pred HHHHHHHHHH----cCCCeEEEEecCCe----EEEEECHHH-HHHHHhhHHHHHHHHHHc-CCCeEEEccCCc
Confidence 3444444444 34778999988764 455665541 122222256677777764 777888766654
No 148
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=27.11 E-value=70 Score=20.01 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=14.3
Q ss_pred hhchhhHHHHHHHHHHHH
Q 022609 164 YWWIDPAGAILLAVYTIT 181 (294)
Q Consensus 164 ~~~~D~~~si~i~~~i~~ 181 (294)
..++||+.+++++..-.+
T Consensus 4 sr~lDP~~av~iG~~ayy 21 (47)
T PF11654_consen 4 SRFLDPLFAVFIGTSAYY 21 (47)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 568999999998877544
No 149
>PRK09577 multidrug efflux protein; Reviewed
Probab=27.07 E-value=1.4e+02 Score=31.69 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=33.6
Q ss_pred EEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEE
Q 022609 232 YFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAF 270 (294)
Q Consensus 232 ~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~ 270 (294)
-.+.++++.+++.++++.++..+++++.+++.|++.++.
T Consensus 567 ~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~~v~~~~ 605 (1032)
T PRK09577 567 GNFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTF 605 (1032)
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 456889999999999999999999999998777776654
No 150
>COG3232 HpaF 5-carboxymethyl-2-hydroxymuconate isomerase [Amino acid transport and metabolism]
Probab=26.90 E-value=1.9e+02 Score=22.09 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=58.7
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEE-------EEEeCC----eEEEEEEEEeCCCCChhHHHHHHHHH
Q 022609 188 MENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVR-------AYTFGV----LYFVEVDIELPEELPLKEAHAIGESL 256 (294)
Q Consensus 188 ~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~-------~~~~g~----~~~v~~~i~v~~~~~v~~~~~i~~~i 256 (294)
.|....+-++.-.+++.+++-+.+-+. |+..+-.+| .|+.++ .-++.+.+.+-.+-+.++-++..+.+
T Consensus 6 ~EyT~Nl~~~~~~~~L~~~vn~~l~as-G~FplggIRsRa~rld~y~maD~~~~~aFvH~tl~IgaGRs~e~rq~vge~L 84 (127)
T COG3232 6 MEYTDNLREEADLPGLLEKVNAALIAS-GLFPLGGIRSRALRLDAYRMADGAEDDAFVHMTLKIGAGRSEEQRQEVGEAL 84 (127)
T ss_pred hhhhcCccccCCcHHHHHHHHHHHHhc-CCCcccceeehhhhhhHHHhcccCCCcceEEEEEEecCCCCHHHHHHHHHHH
Confidence 455556655555678899999998876 355555544 455543 45677888888888889999999999
Q ss_pred HHHHhc-CCCc-c--eEEEEeecc
Q 022609 257 QNKIEK-LPEV-E--RAFVHLDYE 276 (294)
Q Consensus 257 ~~~l~~-~~~v-~--~v~i~~ep~ 276 (294)
-+.|.. +-++ . .+.+.+|-+
T Consensus 85 f~~l~~~~A~l~a~r~lals~Ei~ 108 (127)
T COG3232 85 FAVLTAHFAPLFAQRYLALSFEIR 108 (127)
T ss_pred HHHHHHHHhhhhhccceeEEEEHH
Confidence 888853 2222 2 355655543
No 151
>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture.
Probab=26.89 E-value=5.3e+02 Score=24.16 Aligned_cols=63 Identities=11% Similarity=0.268 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc-CCC
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPE 265 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~-~~~ 265 (294)
..+++++..++....-...+++.+..|+.+++.+.+..-+-|--.=.....+.+.+.|++ .++
T Consensus 150 ~~~~i~~~a~stsr~g~l~~i~~~~~g~~v~lrf~~~TgDAMG~NMv~~~~e~v~~~i~~~~~~ 213 (403)
T cd00643 150 NFEAIKEVAESTSRHARLQSIKPYIAGRSVYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPD 213 (403)
T ss_pred HHHHHHHHHHhcCCCcccceEEEEecCCEEEEEEEEEcCcchhhhHHHHHHHHHHHHHHHhCCC
Confidence 345566666555444567778887788877777777776655444445566677777754 444
No 152
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=26.55 E-value=4.6e+02 Score=24.43 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=49.6
Q ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHhh--------hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 022609 132 GNKIVRAYAKDHYFDVVTNVVGLVAAVLGD--------SFYWWIDPAGAILLAVYTITNWSETVMENAVSLVG 196 (294)
Q Consensus 132 ~~~~l~a~~~~~~~d~~~s~~~~i~~~~~~--------~~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~ 196 (294)
++..+.+++.|.++|.++=++++.+.=... ++|.-.|-+++++=+++....-..+.+|+....+.
T Consensus 33 ~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~EA~~R~I~ 105 (404)
T KOG1483|consen 33 NSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIEAIERIIE 105 (404)
T ss_pred chHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 467789999999999887665555433322 12666888888888999989999999999988874
No 153
>PRK06937 type III secretion system protein; Reviewed
Probab=26.50 E-value=3.7e+02 Score=22.24 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccCC
Q 022609 202 EILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECD 278 (294)
Q Consensus 202 ~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~~ 278 (294)
-+..-+++.+..+++- .+ +.|.|+|+ +...+.+.+.+.++..++..++.|..||.-.
T Consensus 115 ~i~~lv~~al~~l~~~---~~-------------v~I~V~P~----D~~~v~~~~~~~~~~~~~~~~l~i~~D~~L~ 171 (204)
T PRK06937 115 RTLQVVREALALVSNQ---KQ-------------VVVRVNPD----QAAAVREQIAKVLKDFPEVGYLEVVADARLD 171 (204)
T ss_pred HHHHHHHHHHHhcccC---Ce-------------EEEEECHH----HHHHHHHHHHHHHHhCCCCccEEEEeCCCCC
Confidence 3466677777665421 11 23445554 4455566666666777777788888888643
No 154
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=26.45 E-value=33 Score=24.86 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=22.6
Q ss_pred CCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 022609 55 NIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKK 101 (294)
Q Consensus 55 ~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~ai~~l~~~~~~~~ 101 (294)
|+++||+|+.|--.. .+--+-+| .--..++..|.++...+.
T Consensus 4 D~~~fPrGF~RsGdF-Ti~Ea~lL-----e~~G~~~~~L~~G~~~P~ 44 (93)
T PF04219_consen 4 DDKNFPRGFSRSGDF-TIKEAQLL-----EQYGHAMKALESGEREPE 44 (93)
T ss_pred cCCCCCCccccCCcc-cHHHHHHH-----HHHHHHHHHHHcCCcCCC
Confidence 578999999994322 22222222 222334567777765543
No 155
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.42 E-value=3.8e+02 Score=22.25 Aligned_cols=29 Identities=7% Similarity=0.175 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 022609 71 IIIFAAIMATLGFQVLIEAVEKLVKDEPP 99 (294)
Q Consensus 71 ~l~~~~~l~~~~~~i~~~ai~~l~~~~~~ 99 (294)
-+..-..+++.++..+..++..++++...
T Consensus 80 ~~~ld~~L~~~~if~~~~gi~~~f~~~~~ 108 (206)
T PF06570_consen 80 LMALDNSLLFFGIFSLLFGIMGFFSPKNS 108 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33444444456667777788888887544
No 156
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=26.31 E-value=2.1e+02 Score=25.53 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=21.9
Q ss_pred cCCCCChHHHHHHHHHHHcCCCcceeeE
Q 022609 195 VGQSAPPEILQKLTYLVIRHPEVKRIDT 222 (294)
Q Consensus 195 l~~~~~~~~~~~i~~~i~~~~~V~~v~~ 222 (294)
++..++++..+.+++.+++.|||+++.-
T Consensus 65 L~~~~~~~~~~~v~~~i~~~~gV~~v~~ 92 (297)
T COG2177 65 LQIDADQDDAALVREKIEGIPGVKSVRF 92 (297)
T ss_pred EecCCChHHHHHHHHHHhcCCCcceEEE
Confidence 3445677778889999999999888753
No 157
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=25.91 E-value=2.1e+02 Score=19.10 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEE
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAF 270 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~ 270 (294)
+.+..+|.+.+.+. + .++.++..... .. +.+++++.+. ++ .+++.++|++.+||.+|.
T Consensus 11 ~Gll~dI~~~i~~~-~-~nI~~~~~~~~--~~-i~l~i~v~~~---~~----L~~li~~L~~i~gV~~V~ 68 (74)
T cd04877 11 LGITQEVLDLLVEH-N-IDLRGIEIDPK--GR-IYLNFPTIEF---EK----LQTLMPEIRRIDGVEDVK 68 (74)
T ss_pred chHHHHHHHHHHHC-C-CceEEEEEecC--Ce-EEEEeEecCH---HH----HHHHHHHHhCCCCceEEE
Confidence 34677888888775 3 46777777543 22 5666666432 33 467778888889988775
No 158
>PRK11023 outer membrane lipoprotein; Provisional
Probab=25.81 E-value=3.8e+02 Score=22.05 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 199 APPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 199 ~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
.|..+..+++..+...+.+. -.++++...+...++.=.+ + . +| +++..+..++.+||.+|.=.+|+
T Consensus 124 ~D~~It~kik~~L~~~~~v~-~~~I~V~t~~G~V~L~G~v--~-~---~e----~~~a~~iA~~v~GVk~Vv~~~~~ 189 (191)
T PRK11023 124 KDTWITTKVRSQLLTSDSVK-SSNVKVTTENGEVFLLGLV--T-Q---RE----AKAAADIASRVSGVKRVTTAFTY 189 (191)
T ss_pred CcHHHHHHHHHHHhcCCCCC-cceEEEEEECcEEEEEEEe--C-H---HH----HHHHHHHHhcCCCeeEEeeeeEE
Confidence 34557899999998877654 5688888777766655444 2 1 23 24555666778899988777765
No 159
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=25.67 E-value=1.1e+02 Score=21.94 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=28.5
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCc
Q 022609 234 VEVDIELPEELPLKEAHAIGESLQNKIEKLPEV 266 (294)
Q Consensus 234 v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v 266 (294)
.+++|+.+..+..+++.+.++..-+.+++.|++
T Consensus 2 ~~I~I~r~H~Lg~~eAr~~~e~~a~~l~~~~~~ 34 (91)
T TIGR02610 2 SSISVERDHSLGPAAARAKAEDLARKLTDRYGL 34 (91)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 368899999999999999999998888876675
No 160
>PRK14128 iraD DNA replication/recombination/repair protein; Provisional
Probab=25.35 E-value=1.7e+02 Score=19.83 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHhc-CCCcceEEEEeeccC
Q 022609 247 KEAHAIGESLQNKIEK-LPEVERAFVHLDYEC 277 (294)
Q Consensus 247 ~~~~~i~~~i~~~l~~-~~~v~~v~i~~ep~~ 277 (294)
.+...+.+.|++.|.+ .|.+..+.|++.+..
T Consensus 7 ~~r~~i~~~I~~aI~~fEPRL~~v~V~~~~~~ 38 (69)
T PRK14128 7 RLQSWYCRQLRSALLFHEPRIAALQVNLKEAY 38 (69)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEEecCC
Confidence 5668899999999975 688888888887543
No 161
>PRK00194 hypothetical protein; Validated
Probab=25.16 E-value=2.4e+02 Score=19.56 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCC-CCChhHHHHHHHHHHH
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPE-ELPLKEAHAIGESLQN 258 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~-~~~v~~~~~i~~~i~~ 258 (294)
.+.+..++.+.+.+.. .+|.+++....++..+..+.+++++ ..+ ..++.+++++
T Consensus 13 rpGiva~vt~~la~~g--~nI~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~l~~ 67 (90)
T PRK00194 13 KVGIIAGVSTVLAELN--VNILDISQTIMDGYFTMIMLVDISESKKD---FAELKEELEE 67 (90)
T ss_pred CCCHHHHHHHHHHHcC--CCEEehhhHhhCCeeEEEEEEEecCCCCC---HHHHHHHHHH
Confidence 4678899999998874 3566666555667677777777765 333 2444444444
No 162
>COG4846 CcdC Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=25.13 E-value=3.3e+02 Score=21.15 Aligned_cols=53 Identities=9% Similarity=0.184 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHH--HHHHHHHhcch
Q 022609 78 MATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLA--LWIYCKSSGNK 134 (294)
Q Consensus 78 l~~~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~ 134 (294)
.++.|+.+++...+-+++++-+. +...-+.++.+.+.++.+- ++...|+.+++
T Consensus 98 ~ILigLLiiRi~~K~~is~sid~----geLsGMF~ilAf~MIvPWRiaMy~~Ykkl~kq 152 (163)
T COG4846 98 VILIGLLIIRIVMKYIISGSIDV----GELSGMFWILAFGMIVPWRIAMYFSYKKLEKQ 152 (163)
T ss_pred hHHHHHHHHHHHHHHHHcCCccH----HHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45667777888888888776543 3455677888888888763 44444555443
No 163
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=24.94 E-value=2.2e+02 Score=25.87 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHcCCCcceee-EEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccC
Q 022609 199 APPEILQKLTYLVIRHPEVKRID-TVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 277 (294)
Q Consensus 199 ~~~~~~~~i~~~i~~~~~V~~v~-~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~ 277 (294)
+.+++.+++.++..+..+ ..-+ -+++...|+++ |+. +--.+.+..|-+.|++.++|.+|.++-.|+-
T Consensus 80 s~E~l~~qfd~~~~k~~~-~~~~~~vkIFTSGSFL--------D~~---EVP~e~R~~Il~~is~~~~v~~vvvESRpE~ 147 (358)
T COG1244 80 SEENLINQFDEAYSKYEG-KFDEFVVKIFTSGSFL--------DPE---EVPREARRYILERISENDNVKEVVVESRPEF 147 (358)
T ss_pred CHHHHHHHHHHHHHHhcc-cCCCceEEEEcccccC--------Chh---hCCHHHHHHHHHHHhhccceeEEEeecCchh
Confidence 345669999999988864 2223 58888888864 333 2224467788888888888999998877765
Q ss_pred CC
Q 022609 278 DH 279 (294)
Q Consensus 278 ~~ 279 (294)
.+
T Consensus 148 I~ 149 (358)
T COG1244 148 IR 149 (358)
T ss_pred cC
Confidence 33
No 164
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=24.92 E-value=3.5e+02 Score=28.74 Aligned_cols=30 Identities=7% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCChhHHHH-HHHHHHHHHhcCCCcceEEEE
Q 022609 243 ELPLKEAHA-IGESLQNKIEKLPEVERAFVH 272 (294)
Q Consensus 243 ~~~v~~~~~-i~~~i~~~l~~~~~v~~v~i~ 272 (294)
..+..+..+ ..++++.+|++.+||.+|.+.
T Consensus 148 ~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~ 178 (1037)
T PRK10555 148 SMDKQDIADYVASNIQDPLSRVNGVGDIDAY 178 (1037)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEc
Confidence 366677777 458899999999999887653
No 165
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=24.73 E-value=2.9e+02 Score=20.40 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHcCCCc------ceee-EEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCc--ceEE
Q 022609 201 PEILQKLTYLVIRHPEV------KRID-TVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEV--ERAF 270 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V------~~v~-~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v--~~v~ 270 (294)
..+.+++.+.+.+..++ ..++ +.+.+--|+ .-.+.++|..-+..+.++-.++.+++.+.+++..|+ .++.
T Consensus 18 ~~~~~~~~~~l~~~lgkPe~~~~v~~~~~~~m~f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~ 97 (116)
T PTZ00397 18 DAALSDIENAIADVLGKPLSYIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVY 97 (116)
T ss_pred HHHHHHHHHHHHHHhCCChHHEEEEEeCCceEEECCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEE
Confidence 45566666666666332 1222 333444454 355677777657777788889999999999764454 4788
Q ss_pred EEeeccCC
Q 022609 271 VHLDYECD 278 (294)
Q Consensus 271 i~~ep~~~ 278 (294)
|.+..-..
T Consensus 98 I~f~~~~~ 105 (116)
T PTZ00397 98 IEFKDCSA 105 (116)
T ss_pred EEEEECCh
Confidence 77775433
No 166
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=24.73 E-value=1.3e+02 Score=19.10 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=26.5
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCC--CcceEEEEeecc
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLP--EVERAFVHLDYE 276 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~--~v~~v~i~~ep~ 276 (294)
++|.+.++.|.++-.++++++.+.+.+.. .-..++|.++..
T Consensus 3 I~i~~~~g~~~e~K~~l~~~it~~~~~~lg~~~~~i~V~i~E~ 45 (60)
T PF01361_consen 3 ITIKIPEGRTAEQKRELAEAITDAVVEVLGIPPERISVVIEEV 45 (60)
T ss_dssp EEEEEESTS-HHHHHHHHHHHHHHHHHHHTS-GGGEEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCCCeEEEEEEEE
Confidence 45666677788888999999988885422 234566666644
No 167
>COG5546 Small integral membrane protein [Function unknown]
Probab=24.68 E-value=2e+02 Score=19.86 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHH-HHhcCCCC
Q 022609 5 NYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTH-VAMKNINI 56 (294)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~-~~~~~~~~ 56 (294)
.++..++.++|-+.+++. .-+-+| +.|.++.++++++. -....|.+
T Consensus 16 ail~~ifllAQqll~~fG--I~~~~n----l~d~~n~i~~ll~llGVvqDPTT 62 (80)
T COG5546 16 AILGAIFLLAQQLLGWFG--IKLPSN----LADIANTIVTLLVLLGVVQDPTT 62 (80)
T ss_pred HHHHHHHHHHHHHHHHee--eecchh----HHHHHHHHHHHHHHHhcccCCcc
Confidence 345556666676666654 223333 78888888877763 34444543
No 168
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=24.51 E-value=4.1e+02 Score=21.99 Aligned_cols=72 Identities=21% Similarity=0.052 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCCcceeeEEEE--------EEeCCeEEEEEEEEeCCCCChh-HHHHHHHHHHHHHhcCCCcceEEEEe
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRA--------YTFGVLYFVEVDIELPEELPLK-EAHAIGESLQNKIEKLPEVERAFVHL 273 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~--------~~~g~~~~v~~~i~v~~~~~v~-~~~~i~~~i~~~l~~~~~v~~v~i~~ 273 (294)
+..++.+.|+++++|.+. ++|+ ++..+.-.+++.+...++.+.. +...|++-+...+.+. ...+|+|-.
T Consensus 108 le~EL~rtI~~i~~V~~A-rVhl~~P~~~~f~~~~~~~sASV~l~~~~g~~l~~qv~~I~~LVa~SV~~L-~~enVtVv~ 185 (193)
T TIGR02544 108 IEQRLEQTLSQIDGVISA-RVHVVLPENDNNGRPKKPSSASVFIKYRPGLNLDALIPKIKRLVANSIPGL-DYDNVSVVL 185 (193)
T ss_pred HHHHHHHHHHhcCCeeee-EEEEECCCCCcccccCCCCcEEEEEEeCCCCCcHHHHHHHHHHHHHhcCCC-CccceEEEE
Confidence 356678888888887653 2222 1222245688888888876655 4444444444444332 124777777
Q ss_pred ecc
Q 022609 274 DYE 276 (294)
Q Consensus 274 ep~ 276 (294)
.|.
T Consensus 186 ~~~ 188 (193)
T TIGR02544 186 VPA 188 (193)
T ss_pred ecc
Confidence 664
No 169
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=24.30 E-value=1.5e+02 Score=26.46 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=21.6
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEE
Q 022609 234 VEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVH 272 (294)
Q Consensus 234 v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~ 272 (294)
++++++.+.+ ++.++.+++.+++.+||..+++.
T Consensus 61 i~vyL~~~~~------~~~~~~v~~~i~~~~gV~~v~~~ 93 (297)
T COG2177 61 ITVYLQIDAD------QDDAALVREKIEGIPGVKSVRFI 93 (297)
T ss_pred EEEEEecCCC------hHHHHHHHHHHhcCCCcceEEEe
Confidence 4445555444 33445588889988999877754
No 170
>COG1550 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.25 E-value=2e+02 Score=20.86 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=29.4
Q ss_pred EEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcc
Q 022609 233 FVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVE 267 (294)
Q Consensus 233 ~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~ 267 (294)
++++.+....--+++|=..+.+++-+++|++++++
T Consensus 5 ~~~~~l~~~~v~sLKeKRavlr~iv~rLk~KFnvS 39 (95)
T COG1550 5 VLECELRLYDVRSLKEKRAVLRPIVTRLKNKFNVS 39 (95)
T ss_pred EEEEEEEecccccHHHHHHHHHHHHHHHHHhccee
Confidence 46677777777899999999999999999888875
No 171
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=24.12 E-value=4e+02 Score=23.82 Aligned_cols=27 Identities=4% Similarity=0.097 Sum_probs=22.3
Q ss_pred CCCCChHHHHHHHHHHHcCCCcceeeE
Q 022609 196 GQSAPPEILQKLTYLVIRHPEVKRIDT 222 (294)
Q Consensus 196 ~~~~~~~~~~~i~~~i~~~~~V~~v~~ 222 (294)
+...+++..+++.+.+++.|+|.+++.
T Consensus 73 ~~~~~~~~~~~l~~~L~~~~~V~~v~~ 99 (309)
T PRK11026 73 DKTLDDDAANAVVEQLKAEDGVEKVNY 99 (309)
T ss_pred CCCCCHHHHHHHHHHHhCCCCcceEEE
Confidence 456678889999999999999888754
No 172
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=23.60 E-value=1.5e+02 Score=26.44 Aligned_cols=38 Identities=11% Similarity=0.290 Sum_probs=29.3
Q ss_pred EEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 237 DIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 237 ~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
..++++..-.+|-.++++++-.+|++..+..++-|++-
T Consensus 194 e~eisds~l~~qGekiaqeVlnRlR~~d~lkdiPI~iA 231 (382)
T COG4851 194 ETEISDSKLLEQGEKIAQEVLNRLRREDGLKDIPITIA 231 (382)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHhhcCCccCceEEE
Confidence 34444444557889999999999998778888888776
No 173
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=23.28 E-value=4.3e+02 Score=28.10 Aligned_cols=68 Identities=7% Similarity=0.099 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEe--CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEE
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTF--GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVH 272 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~--g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~ 272 (294)
..+++.++-.+.|.- +..-.+.+. ++.....+.+.=+.+-..+..+...+.++.+|++.+||.+|.+.
T Consensus 107 V~~kv~~~~~~LP~~--~~~p~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~ 176 (1009)
T COG0841 107 VQNKIQQAESRLPSG--VQQPGVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLF 176 (1009)
T ss_pred HHHHHHHHHhcCCCc--cCCCceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 344455544455642 444444444 44555556665443334566677777899999999999887643
No 174
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=22.76 E-value=1.2e+02 Score=21.27 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=28.0
Q ss_pred EEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCc--ceEEEEeecc
Q 022609 232 YFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEV--ERAFVHLDYE 276 (294)
Q Consensus 232 ~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v--~~v~i~~ep~ 276 (294)
-++-++|...++-|.++=.++-+.+.+.|++..|+ .+|.|-+..-
T Consensus 28 ~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~ 74 (82)
T PF14552_consen 28 DFVIIQITSGAGRSTEQKKALYRALAERLAEKLGIRPEDVMIVLVEN 74 (82)
T ss_dssp T-EEEEEEECS---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEC
Confidence 45677888887778787778888888888654555 3777766543
No 175
>PHA02568 J baseplate assembly protein; Provisional
Probab=22.30 E-value=3.4e+02 Score=24.29 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCChHHHHHHHHHHHcCCCcceee-EEEEEEeCC-eEEEEEEEEeCCCCChh
Q 022609 198 SAPPEILQKLTYLVIRHPEVKRID-TVRAYTFGV-LYFVEVDIELPEELPLK 247 (294)
Q Consensus 198 ~~~~~~~~~i~~~i~~~~~V~~v~-~~~~~~~g~-~~~v~~~i~v~~~~~v~ 247 (294)
.+++++.+++++.+.. ++++-+- .+.+..... .+.+++++.+.++.+.+
T Consensus 180 ~ps~~Ll~~V~~~l~~-e~vrPl~d~VtV~sa~~v~~~I~a~l~l~~g~~~~ 230 (300)
T PHA02568 180 TASEDLLAAVRAALNR-EDVRPVTDRVTVQSATIVPYQIRATLYLYPGPDSE 230 (300)
T ss_pred CCCHHHHHHHHHHhcc-cccCCCCCEEEEECCEEEEEEEEEEEEEcCCCChH
Confidence 4678889999999954 3444443 344433333 46688888887775433
No 176
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=22.28 E-value=1.3e+02 Score=21.30 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=26.8
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCCc
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPEV 266 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v 266 (294)
++|+.+.+++.+|+.+..++.-..+++.+++
T Consensus 1 I~I~r~H~Lg~~eAr~~~~~~~~~l~~~~~~ 31 (87)
T PF09650_consen 1 IHIERPHSLGREEARRRAEELAEKLAEEYGV 31 (87)
T ss_pred CeEEecCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4788899999999999999999999766675
No 177
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.18 E-value=2.2e+02 Score=18.08 Aligned_cols=52 Identities=21% Similarity=0.102 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEe-----CCeEEEEEEEEeCCCCChhHHHHHHHHHH
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTF-----GVLYFVEVDIELPEELPLKEAHAIGESLQ 257 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~-----g~~~~v~~~i~v~~~~~v~~~~~i~~~i~ 257 (294)
+....++.+.+.+.. .++.++..... .....+.++++++.. ++.+++.++++
T Consensus 9 ~G~L~~i~~~i~~~~--~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~---~~l~~l~~~l~ 65 (73)
T cd04886 9 PGQLAKLLAVIAEAG--ANIIEVSHDRAFKTLPLGEVEVELTLETRGA---EHIEEIIAALR 65 (73)
T ss_pred CChHHHHHHHHHHcC--CCEEEEEEEeccCCCCCceEEEEEEEEeCCH---HHHHHHHHHHH
Confidence 345778888887764 35556655543 234567777777443 44444444443
No 178
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.17 E-value=4.1e+02 Score=21.18 Aligned_cols=71 Identities=8% Similarity=0.115 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCc-ceEEEEee
Q 022609 202 EILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEV-ERAFVHLD 274 (294)
Q Consensus 202 ~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v-~~v~i~~e 274 (294)
.+.+-+...+++. | .++.++...+.|+...+.+.+.=+.++|+++-.+..+.+...+.....+ ..-+.++-
T Consensus 9 ~v~~liep~~~~l-G-~ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVS 80 (153)
T COG0779 9 KVTELIEPVVESL-G-FELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLDVEDPIEGAYFLEVS 80 (153)
T ss_pred HHHHHHHHhHhhc-C-cEEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCcccccEEEEee
Confidence 3344455555554 3 5788999999999999999988878999999999999999999732233 23445554
No 179
>PRK14635 hypothetical protein; Provisional
Probab=21.98 E-value=4.2e+02 Score=21.21 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=47.8
Q ss_pred CChHHHHH-HHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEe----CCCCChhHHHHHHHHHHHHHhcCCCcceEEEEe
Q 022609 199 APPEILQK-LTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIEL----PEELPLKEAHAIGESLQNKIEKLPEVERAFVHL 273 (294)
Q Consensus 199 ~~~~~~~~-i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v----~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ 273 (294)
+.++..+. +...+ +. | .++.++.+.+.|+...+.+.|.- +...++++-.++.+.+...|.+......-++++
T Consensus 3 ~~~~~i~~l~~~~~-~~-g-~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~~d~~~~Y~LEV 79 (162)
T PRK14635 3 VSEEEISEILDRVL-AL-P-VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISPDLDFTLKV 79 (162)
T ss_pred CcHHHHHHHHHHHH-CC-C-CEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCeEEEE
Confidence 33433333 34444 32 4 57888988888888888888864 245899999999999999996421223444444
Q ss_pred e
Q 022609 274 D 274 (294)
Q Consensus 274 e 274 (294)
-
T Consensus 80 S 80 (162)
T PRK14635 80 S 80 (162)
T ss_pred c
Confidence 3
No 180
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=21.88 E-value=2.9e+02 Score=19.28 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=31.3
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
+-+.+.++.+.++..+..+.+++.-.+.|++..+.+-..-
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~ 44 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNF 44 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEES
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEccc
Confidence 3456789999999988888887776789999877766553
No 181
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=21.58 E-value=1.7e+02 Score=26.14 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCcceEEE
Q 022609 241 PEELPLKEAHAIGESLQNKIEKLPEVERAFV 271 (294)
Q Consensus 241 ~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i 271 (294)
+++.+.++ .+++++++++.|+|.+++.
T Consensus 73 ~~~~~~~~----~~~l~~~l~~~~~V~~v~~ 99 (309)
T TIGR00439 73 EKALAQSD----ADTVVSLLTRDKGVENINY 99 (309)
T ss_pred CCCCCHHH----HHHHHHHHhCCCCccEEEE
Confidence 45555444 3445555666677776654
No 182
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=21.45 E-value=5e+02 Score=21.87 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCCCChHH-HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcC
Q 022609 185 ETVMENAVSLVGQSAPPEI-LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKL 263 (294)
Q Consensus 185 ~~~~~~~~~Ll~~~~~~~~-~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~ 263 (294)
.+..++...+++.-.|.+. ...+++++...-. +. . +.+.|+| .+.+.+++++ ..+...
T Consensus 97 ~LVl~~Vr~ILg~fd~~ell~r~vr~Al~~~~~------------~~--~--v~l~V~P----~~vd~l~~~l-a~~~~~ 155 (207)
T PF06635_consen 97 ELVLEIVRKILGEFDPDELLVRAVRQALSQIRQ------------GA--E--VTLRVAP----ADVDMLRREL-AALEGR 155 (207)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhc------------CC--e--EEEEECH----HHHHHHHHHH-Hhhhcc
Confidence 4566677778887656666 5557777765421 11 1 2334444 4666777776 444656
Q ss_pred CCcceEEEEeeccCCCC
Q 022609 264 PEVERAFVHLDYECDHK 280 (294)
Q Consensus 264 ~~v~~v~i~~ep~~~~~ 280 (294)
++...+.|..||.....
T Consensus 156 ~g~~~i~I~aDp~La~~ 172 (207)
T PF06635_consen 156 PGRPKIRIVADPRLAAG 172 (207)
T ss_pred CCCCceeeecCCCCCCC
Confidence 67778888888865444
No 183
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=21.36 E-value=2.2e+02 Score=29.70 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=35.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccC
Q 022609 235 EVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 277 (294)
Q Consensus 235 ~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~ 277 (294)
-......|+.|++|+.+..+.+++.++++|.+.+|.-+.-..+
T Consensus 561 ~~~~~~~Pg~Sl~~~~~m~~~~e~~ik~~PeV~~V~~k~GrAe 603 (1027)
T COG3696 561 VYMPLTIPGVSLDEALRMLQAIERAIKKFPEVERVFGKTGRAE 603 (1027)
T ss_pred eeeeccCCCCCHHHHHHHHHHHHHHHhcCcchheeeeccccCC
Confidence 3445567999999999999999999999999998887765443
No 184
>KOG3320 consensus 40S ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=21.20 E-value=4.7e+02 Score=21.45 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHcCCC----c-ceeeEEEE-----EEe-CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcc
Q 022609 199 APPEILQKLTYLVIRHPE----V-KRIDTVRA-----YTF-GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVE 267 (294)
Q Consensus 199 ~~~~~~~~i~~~i~~~~~----V-~~v~~~~~-----~~~-g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~ 267 (294)
.|.|...+|.+++.+.+. . ....++.+ ..+ |+...+-+.+-++.- +..+++.-++-+.+++.+.-.
T Consensus 15 ~ptE~E~~iaqal~~le~~n~~lk~~lr~L~I~~a~eiev~Gg~Kaivi~VP~p~l---k~fqki~~~LvreleKKF~gk 91 (192)
T KOG3320|consen 15 KPTEFEMQIAQALLDLEMDNSDLKAQLRELNITSAKEIEVGGGRKAIVIFVPVPQL---KAFQKIQVRLVRELEKKFSGK 91 (192)
T ss_pred CchHHHHHHHHHHHHHHhcchhhHHHhhhheeeeeEEEEecCCcEEEEEEechHHH---HHHHHHHHHHHHHHHHhcCCc
Confidence 456666666666655521 1 11222322 333 445555555555433 677888888889996544445
Q ss_pred eEEEE----eeccCCCC
Q 022609 268 RAFVH----LDYECDHK 280 (294)
Q Consensus 268 ~v~i~----~ep~~~~~ 280 (294)
||.+- +.|....+
T Consensus 92 ~Vifia~Rrilpkp~rk 108 (192)
T KOG3320|consen 92 HVIFIAQRRILPKPTRK 108 (192)
T ss_pred eEEEEEeeeeccCCCCC
Confidence 55544 44554444
No 185
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=21.05 E-value=6.2e+02 Score=26.96 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHH-HHHHHHHHHHHhcCC
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEA-HAIGESLQNKIEKLP 264 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~-~~i~~~i~~~l~~~~ 264 (294)
.+++++.+.+++||+ +++.....+ ...+.++++++.+.+++ +++++++.+.-.+.|
T Consensus 66 t~piE~~l~~v~gv~---~v~S~s~~g--~s~i~v~f~~~~d~~~a~~~v~~~v~~~~~~LP 122 (1051)
T TIGR00914 66 TYPIETAMAGLPGLE---TTRSLSRYG--LSQVTVIFKDGTDLYFARQLVNERLQQARDNLP 122 (1051)
T ss_pred CHHHHHHhcCCCCee---EEEEEccCc--eEEEEEEEeCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 455666665556554 444333222 23444555555544443 455555543323455
No 186
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=20.95 E-value=2.2e+02 Score=30.26 Aligned_cols=43 Identities=9% Similarity=0.001 Sum_probs=34.7
Q ss_pred eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEe
Q 022609 231 LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHL 273 (294)
Q Consensus 231 ~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ 273 (294)
.-.+.++++.+++.++++..+..+++++.+++.+++.+++...
T Consensus 557 ~~~~~v~v~~~~gtsl~~t~~~~~~~~~~l~~~~~V~~v~~~~ 599 (1025)
T PRK10614 557 TGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFT 599 (1025)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 3446678888999999999999999999998777777666443
No 187
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.83 E-value=5.2e+02 Score=21.90 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=21.2
Q ss_pred CCCCCCcchHHhHHHHHHHHHHHHHHHHH
Q 022609 57 YKYPIGKLRVQPVGIIIFAAIMATLGFQV 85 (294)
Q Consensus 57 ~~~p~G~~r~E~l~~l~~~~~l~~~~~~i 85 (294)
.++..+..++|.+..++-+++++++++..
T Consensus 52 ~~~~~~~~~lE~~WtviP~iil~~l~~~s 80 (228)
T MTH00140 52 CRTILEAQKLETIWTIVPALILVFLALPS 80 (228)
T ss_pred CccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 45667888999998888887776655543
No 188
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=20.74 E-value=4.9e+02 Score=24.89 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCC--cceeeEEEEEEe--CCeEEEEEEEE---eCCCCChhHHHHHHHHHHHHHhcCCCc
Q 022609 204 LQKLTYLVIRHPE--VKRIDTVRAYTF--GVLYFVEVDIE---LPEELPLKEAHAIGESLQNKIEKLPEV 266 (294)
Q Consensus 204 ~~~i~~~i~~~~~--V~~v~~~~~~~~--g~~~~v~~~i~---v~~~~~v~~~~~i~~~i~~~l~~~~~v 266 (294)
.+++.+.+++..+ +.++.=+-+.+- .++..+.+.+. .+.++|-+|++++.++|.+.+++..|+
T Consensus 389 ~~dI~d~Ir~~~g~lle~V~LfDvY~g~k~GkKSLa~RL~yrs~eRTLTdeEVn~i~~kIi~~L~kkfga 458 (460)
T TIGR00469 389 ENDFMDIIRNIAGDLVEQIKLVDKFKHPKTGKKSMCFRINYQHMDRNLTNAEVNEIHDMIASALVDEFNV 458 (460)
T ss_pred HHHHHHHHHHhCcCeEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 3567777766532 333333333331 12344444444 356689999999999999999765554
No 189
>PRK14636 hypothetical protein; Provisional
Probab=20.72 E-value=4.7e+02 Score=21.32 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCC--CCChhHHHHHHHHHHHHHhc
Q 022609 202 EILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPE--ELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 202 ~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~--~~~v~~~~~i~~~i~~~l~~ 262 (294)
++.+.+...+++. | .++.++.+.+.|+...+.+.|.-++ +.++++-.++.+.+...|..
T Consensus 6 ~i~~lvep~~~~~-G-leLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~ 66 (176)
T PRK14636 6 ALTALIEPEAKAL-G-LDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDE 66 (176)
T ss_pred HHHHHHHHHHHHc-C-CEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcc
Confidence 3455556666555 3 5678888877777778888887543 48999999999999999964
No 190
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=20.66 E-value=2.9e+02 Score=22.09 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEe
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHL 273 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ 273 (294)
+++..+++.+.+++...|..+.++.--..=.+-.+=+.+..+++ +-.+..++++.-+.++-.. +-..+++++
T Consensus 52 d~~~i~qi~kQl~Kli~V~~V~~~~~~~~v~rEl~LiKv~~~~~-~r~~i~~i~~~f~a~ivdv-~~~~~~ie~ 123 (157)
T TIGR00119 52 DDKVLEQITKQLNKLVDVIKVSDLTESAIVERELCLVKVSAPGE-GRDEIIRLTNIFRGRIVDV-SPDSYTVEV 123 (157)
T ss_pred CHHHHHHHHHHHhcCccEEEEEecCCCcceeeEEEEEEEECCcc-CHHHHHHHHHHhCCEEEEe-cCCEEEEEE
No 191
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=20.48 E-value=2.6e+02 Score=22.47 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 022609 199 APPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKI 260 (294)
Q Consensus 199 ~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l 260 (294)
.+++..+++.+.+++...|.++.++.--..=.+-.+=+.+..+++ +-.+..++++.-+.++
T Consensus 52 ~~~~~i~qi~kQl~KLidV~~V~~~~~~~~v~rEl~LiKv~~~~~-~r~~i~~i~~~f~a~i 112 (161)
T PRK11895 52 GDEQVIEQITKQLNKLIDVLKVVDLTEEAHVERELALVKVRASGE-NRAEILRLADIFRAKI 112 (161)
T ss_pred CCHHHHHHHHHHHhccccEEEEEecCCcchhheEEEEEEEECCcc-cHHHHHHHHHHhCCEE
Confidence 367789999999999987777776542221122334556665543 2244444444443333
No 192
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.43 E-value=3.8e+02 Score=20.18 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 022609 69 VGIIIFAAIMATLGFQVLIEAVEKLVKD 96 (294)
Q Consensus 69 l~~l~~~~~l~~~~~~i~~~ai~~l~~~ 96 (294)
.=++..+++++.+|..++..+.--+.++
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456667777777777776666666655
No 193
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=20.26 E-value=4.6e+02 Score=21.03 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEE
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAF 270 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~ 270 (294)
+....+|...+.+.. .++..+-+-.....-...+.+.++.+ ++..+.+.++|.+..+|.+|.
T Consensus 13 pGvL~rI~~lf~rrg--~NI~Sl~v~~te~~~~sriti~V~~~------~~~i~qi~kQl~KLidV~~V~ 74 (161)
T PRK11895 13 PGVLSRVAGLFSRRG--YNIESLTVGPTEDPGLSRMTIVTSGD------EQVIEQITKQLNKLIDVLKVV 74 (161)
T ss_pred CcHHHHHHHHHHhCC--CcEEEEEeeecCCCCEEEEEEEEECC------HHHHHHHHHHHhccccEEEEE
Confidence 556888888888864 56777766555422333355555544 335667777777777776664
No 194
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=20.13 E-value=3.2e+02 Score=19.21 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=38.4
Q ss_pred CCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEE
Q 022609 197 QSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 271 (294)
Q Consensus 197 ~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i 271 (294)
..+.|+..+++.+..+... ..+-.++.-..-+.-.+++++.|+++-+++ -+..+|++.+.+..|.+
T Consensus 10 ar~~pe~leRVLrvtrhRG--F~vcamnmt~~~da~~~nie~tV~s~R~~~-------lL~~QLeKl~Dv~~V~i 75 (86)
T COG3978 10 ARFNPETLERVLRVTRHRG--FRVCAMNMTAAVDAGNANIELTVDSDRSVD-------LLTSQLEKLYDVAHVEI 75 (86)
T ss_pred ccCChHHHHHHHHHhhhcC--eEEEEeecccccccccceEEEEEcCCCChH-------HHHHHHHHHccceeEEE
Confidence 3567888999998887653 233344433332233455666777775533 44556666667765543
Done!