Query 022609
Match_columns 294
No_of_seqs 133 out of 1342
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 08:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 2.7E-56 9.3E-61 396.9 16.1 277 2-283 16-296 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 1.4E-55 4.7E-60 389.0 17.0 272 2-278 7-282 (283)
3 3byp_A CZRB protein; membrane 99.7 3.7E-16 1.3E-20 114.2 10.8 84 193-276 1-86 (94)
4 2zzt_A Putative uncharacterize 99.6 3.9E-15 1.3E-19 111.3 9.5 84 195-278 1-87 (107)
5 3h90_A Ferrous-iron efflux pum 97.6 3.2E-05 1.1E-09 67.2 3.5 89 3-99 116-204 (283)
6 3j1z_P YIIP, cation efflux fam 97.6 4.2E-05 1.4E-09 67.3 3.8 88 4-99 126-213 (306)
7 2jsx_A Protein NAPD; TAT, proo 87.1 2.5 8.5E-05 29.8 7.0 69 200-280 15-83 (95)
8 3cq1_A Putative uncharacterize 84.0 2.4 8.1E-05 30.2 5.8 67 203-275 7-83 (103)
9 3lno_A Putative uncharacterize 83.6 3.4 0.00012 29.7 6.5 71 203-276 9-88 (108)
10 1uwd_A Hypothetical protein TM 80.3 3.4 0.00012 29.3 5.5 67 204-275 8-84 (103)
11 2cvi_A 75AA long hypothetical 80.1 4.4 0.00015 27.3 5.8 62 203-276 14-76 (83)
12 1vq3_A Phosphoribosylformylgly 76.5 17 0.00058 25.4 8.5 62 203-273 32-93 (94)
13 3gxs_A Phenylacetate-coenzyme 76.2 18 0.00061 25.5 8.8 70 204-275 16-88 (109)
14 3lax_A Phenylacetate-coenzyme 75.5 18 0.00062 25.3 9.3 70 205-275 17-88 (109)
15 2zbc_A 83AA long hypothetical 74.1 6.8 0.00023 26.0 5.3 61 203-275 14-75 (83)
16 2dbb_A Putative HTH-type trans 71.0 26 0.00091 26.1 8.7 66 198-274 76-142 (151)
17 3zzp_A TS9, ribosomal protein 67.6 9 0.00031 25.7 4.6 68 192-262 7-74 (77)
18 3c6v_A Probable tautomerase/de 66.0 34 0.0012 26.3 8.4 87 203-291 42-143 (161)
19 2djw_A Probable transcriptiona 64.2 5.4 0.00019 27.4 3.1 63 200-274 11-74 (92)
20 2cg4_A Regulatory protein ASNC 57.5 31 0.0011 25.8 6.7 62 201-274 79-141 (152)
21 1zpv_A ACT domain protein; str 57.2 40 0.0014 22.5 8.5 69 200-277 15-83 (91)
22 3mgj_A Uncharacterized protein 55.8 54 0.0019 23.8 7.2 74 199-275 13-87 (118)
23 1otg_A 5-carboxymethyl-2-hydro 53.0 63 0.0022 23.5 9.3 78 201-279 18-112 (125)
24 1t4a_A PURS; tetramer, complex 52.5 51 0.0017 22.2 6.4 61 205-275 20-80 (84)
25 1gtd_A MTH169; synthetase, FGA 51.2 54 0.0018 22.1 7.6 62 205-276 21-82 (85)
26 2kjw_A TS9, 30S ribosomal prot 48.4 59 0.002 22.6 6.3 71 192-265 7-77 (96)
27 2jp3_A FXYD domain-containing 47.8 32 0.0011 22.2 4.3 30 58-88 9-38 (67)
28 3e6q_A Putative 5-carboxymethy 45.8 55 0.0019 24.7 6.3 75 201-276 40-130 (146)
29 2yx5_A UPF0062 protein MJ1593; 45.7 43 0.0015 22.5 5.2 62 205-275 20-81 (83)
30 2zw2_A Putative uncharacterize 45.1 53 0.0018 22.6 5.6 63 205-276 24-87 (92)
31 1rwu_A Hypothetical UPF0250 pr 44.8 51 0.0017 23.6 5.6 60 200-269 46-108 (109)
32 3abf_A 4-oxalocrotonate tautom 44.7 29 0.00098 21.5 4.0 42 236-277 4-47 (64)
33 1ib8_A Conserved protein SP14. 44.7 1E+02 0.0036 23.6 7.9 44 218-261 26-69 (164)
34 2cyy_A Putative HTH-type trans 44.1 51 0.0017 24.5 6.0 65 199-276 75-140 (151)
35 2pn6_A ST1022, 150AA long hypo 43.6 59 0.002 24.0 6.3 64 201-276 75-139 (150)
36 2nyi_A Unknown protein; protei 40.1 87 0.003 24.5 7.0 58 200-263 103-166 (195)
37 2vv5_A MSCS, small-conductance 39.9 1.7E+02 0.0057 24.5 9.5 76 201-276 199-280 (286)
38 2ko1_A CTR148A, GTP pyrophosph 39.3 78 0.0027 20.6 8.9 62 201-271 16-77 (88)
39 3m21_A Probable tautomerase HP 39.0 41 0.0014 21.2 4.0 45 236-280 3-52 (67)
40 2x4k_A 4-oxalocrotonate tautom 39.0 25 0.00086 21.5 3.0 42 236-277 6-49 (63)
41 1ghh_A DINI, DNA-damage-induci 38.9 87 0.003 21.1 5.7 39 234-272 3-43 (81)
42 3mb2_A 4-oxalocrotonate tautom 37.6 28 0.00095 22.4 3.1 41 236-276 4-46 (72)
43 2e1c_A Putative HTH-type trans 37.5 61 0.0021 24.9 5.6 65 199-276 95-160 (171)
44 2p5v_A Transcriptional regulat 36.0 83 0.0028 23.6 6.1 61 202-274 83-144 (162)
45 2ia0_A Putative HTH-type trans 35.9 1.1E+02 0.0038 23.3 6.9 58 203-274 96-154 (171)
46 3qov_A Phenylacetate-coenzyme 35.6 1.4E+02 0.0048 26.2 8.5 59 204-263 343-404 (436)
47 3ry0_A Putative tautomerase; o 34.8 32 0.0011 21.5 3.0 42 236-277 3-46 (65)
48 2opa_A Probable tautomerase YW 34.1 34 0.0012 20.9 3.0 41 236-276 3-45 (61)
49 1mli_A Muconolactone isomerase 33.0 69 0.0024 22.4 4.5 29 232-260 3-31 (96)
50 3m20_A 4-oxalocrotonate tautom 33.0 37 0.0013 21.1 3.0 41 236-277 3-45 (62)
51 3eb7_A Insecticidal delta-endo 32.9 1.5E+02 0.0053 27.7 8.5 69 146-214 5-78 (589)
52 1otf_A 4-oxalocrotonate tautom 32.8 31 0.0011 21.1 2.6 41 236-276 3-45 (62)
53 1i1g_A Transcriptional regulat 32.8 81 0.0028 22.9 5.4 63 200-274 73-136 (141)
54 2i52_A Hypothetical protein; s 32.5 48 0.0016 24.2 3.7 29 246-274 40-68 (121)
55 3i4p_A Transcriptional regulat 31.3 1.7E+02 0.0056 22.0 9.1 62 201-275 76-138 (162)
56 3ej9_A Alpha-subunit of trans- 30.9 33 0.0011 22.5 2.6 41 236-276 4-46 (76)
57 2ogf_A Hypothetical protein MJ 30.1 58 0.002 23.7 3.8 28 247-274 46-73 (122)
58 3tuf_A Stage III sporulation p 28.9 1.3E+02 0.0044 23.9 6.1 51 219-276 145-196 (197)
59 2f1f_A Acetolactate synthase i 28.8 2E+02 0.0067 22.0 7.6 63 200-270 13-75 (164)
60 2dgb_A Hypothetical protein PU 26.9 1.4E+02 0.0049 19.9 7.4 60 205-275 22-81 (84)
61 1j27_A Hypothetical protein TT 26.7 80 0.0027 22.2 4.1 40 234-276 8-47 (102)
62 3bde_A MLL5499 protein; stress 26.4 1.8E+02 0.0061 20.8 6.5 41 236-276 25-65 (120)
63 2zxe_G FXYD10, phospholemman-l 25.6 67 0.0023 21.1 3.1 30 57-87 10-39 (74)
64 2yy3_A Elongation factor 1-bet 24.8 1.7E+02 0.0059 20.0 6.6 62 204-272 21-86 (91)
65 2y27_A Phenylacetate-coenzyme 24.8 3.4E+02 0.012 23.6 9.1 59 204-262 345-405 (437)
66 3mlc_A FG41 malonate semialdeh 24.2 1.2E+02 0.0042 22.2 5.0 48 232-280 64-113 (136)
67 1gyx_A YDCE, B1461, hypothetic 23.9 79 0.0027 20.4 3.5 42 236-277 3-47 (76)
68 1wh9_A 40S ribosomal protein S 23.8 1.3E+02 0.0044 20.6 4.7 60 200-260 5-68 (92)
69 2r4f_A 3-hydroxy-3-methylgluta 22.6 4.3E+02 0.015 23.8 9.6 65 201-265 178-243 (441)
70 1hfo_A Migration inhibitory fa 22.2 1E+02 0.0035 21.5 4.1 46 234-279 57-104 (113)
71 2y4o_A Phenylacetate-coenzyme 21.3 4.1E+02 0.014 23.1 9.4 59 204-262 347-409 (443)
72 1uiz_A MIF, macrophage migrati 21.2 1.1E+02 0.0039 21.4 4.2 46 234-279 58-105 (115)
73 2o5a_A BH1328 protein; BHR21, 21.0 2.2E+02 0.0075 20.7 5.7 58 200-262 3-61 (125)
74 3ce8_A Putative PII-like nitro 20.8 2.4E+02 0.0084 20.3 6.2 69 198-272 29-111 (120)
75 2os5_A Acemif; macrophage migr 20.6 1.4E+02 0.0046 21.1 4.5 44 234-277 58-103 (119)
76 2pc6_A Probable acetolactate s 20.4 2.4E+02 0.0083 21.6 6.1 62 201-270 15-76 (165)
77 2xcz_A Possible ATLS1-like lig 20.1 1.3E+02 0.0044 21.0 4.3 46 234-279 58-105 (115)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=2.7e-56 Score=396.88 Aligned_cols=277 Identities=22% Similarity=0.269 Sum_probs=254.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHH
Q 022609 2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 81 (294)
Q Consensus 2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 81 (294)
++++++|++++++|+++|+.+||.||+|||+||++|+++.++++++.+.++||+|++|||||+|+|+++++++++++++.
T Consensus 16 ~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~l~~~ 95 (306)
T 3j1z_P 16 RASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQSAFIMGS 95 (306)
T ss_dssp HHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh----cchhhhhhhhhhhhhHHHHHHHHHHH
Q 022609 82 GFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS----GNKIVRAYAKDHYFDVVTNVVGLVAA 157 (294)
Q Consensus 82 ~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~l~a~~~~~~~d~~~s~~~~i~~ 157 (294)
|+.+++++++++++|++.+ ...+++++++++++++..++++.++. +|+++++++.|.+.|.++|++++++.
T Consensus 96 ~~~i~~eai~~l~~p~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~ 170 (306)
T 3j1z_P 96 AFLLLFYGGERLLNPSPVE-----NATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLAL 170 (306)
T ss_dssp HHHHHHHHHHTTTTTCCGG-----GTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTT
T ss_pred HHHHHHHhhhheecCCCcc-----ccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHH
Confidence 9999999999999998764 23556777888899998888877653 47899999999999999999777765
Q ss_pred HHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEE
Q 022609 158 VLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVD 237 (294)
Q Consensus 158 ~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~ 237 (294)
++..++|+|+||++++++++++++.+++++|++...|+|+++|++..++|++.+++.|+|.++|++|+|+.|+++++++|
T Consensus 171 ~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~~~G~~~~v~~h 250 (306)
T 3j1z_P 171 VLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFH 250 (306)
T ss_dssp SSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCEEETTEEEEEEC
T ss_pred HHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEEEECCcEEEEEE
Confidence 55555699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccCCCCCcc
Q 022609 238 IELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEH 283 (294)
Q Consensus 238 i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~~~~~~~ 283 (294)
+++|+++|++|+|++.+++|+++++.+++.+++||+||...+++++
T Consensus 251 i~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~~ePt~~ 296 (306)
T 3j1z_P 251 LELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQ 296 (306)
T ss_dssp CEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETTSCCCCC
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCCCCcc
Confidence 9999999999999999999999987667889999999987665443
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=1.4e-55 Score=389.00 Aligned_cols=272 Identities=20% Similarity=0.203 Sum_probs=249.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHH
Q 022609 2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 81 (294)
Q Consensus 2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~ 81 (294)
++++++|++++++|+++|+.+||.|+++||+||++|+++.++++++.+.++||+|++|||||+|+|+++++++++++++.
T Consensus 7 ~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~ 86 (283)
T 3h90_A 7 IAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGS 86 (283)
T ss_dssp HHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH----hcchhhhhhhhhhhhhHHHHHHHHHHH
Q 022609 82 GFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTNVVGLVAA 157 (294)
Q Consensus 82 ~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~l~a~~~~~~~d~~~s~~~~i~~ 157 (294)
|+.+++++++++++|++.+. ..++++++++++++|.+++++.+| .+|+++++++.|++.|.++|++++++.
T Consensus 87 ~~~i~~eai~~l~~~~~~~~-----~~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~ 161 (283)
T 3h90_A 87 ALFLFLTGIQHLISPTPMTD-----PGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLAL 161 (283)
T ss_dssp HHHHHHHHHHTSSSSCCCCC-----CCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSS
T ss_pred HHHHHHHHHHHHcCCCCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887643 344677888999999988887754 468999999999999999998766654
Q ss_pred HHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEE
Q 022609 158 VLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVD 237 (294)
Q Consensus 158 ~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~ 237 (294)
.+....|+|+||++++++++++++.+++++|++...|+|++||++..+++++.+++.|+|.++|++|+|+.|++.++++|
T Consensus 162 ~~~~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~h 241 (283)
T 3h90_A 162 GLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIH 241 (283)
T ss_dssp CSCSTTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEE
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEE
Confidence 44333488999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccCC
Q 022609 238 IELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECD 278 (294)
Q Consensus 238 i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~~ 278 (294)
+++|+++|++|+|++++++++.+++.++..++|||+||++.
T Consensus 242 v~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~v~ih~ep~~~ 282 (283)
T 3h90_A 242 LEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPCSV 282 (283)
T ss_dssp EECCTTCBHHHHHHHHHHHHHHHHHHSTTCEEEEEEECSCC
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 99999999999999999999999754445799999999743
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.67 E-value=3.7e-16 Score=114.24 Aligned_cols=84 Identities=18% Similarity=0.358 Sum_probs=73.3
Q ss_pred hhcCCCCChHHHHHHHHHHHcC--CCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEE
Q 022609 193 SLVGQSAPPEILQKLTYLVIRH--PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAF 270 (294)
Q Consensus 193 ~Ll~~~~~~~~~~~i~~~i~~~--~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~ 270 (294)
.|+|.+++++..++|++.+++. +||.++|++|+|+.|+.+++++|+.+++++|+.+++++.+++++.|++.+++.+++
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~vt 80 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQAT 80 (94)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEE
T ss_pred CCcCCCCCHHHHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 3788888999999999999999 99999999999999999999999999999999999999999999997533445999
Q ss_pred EEeecc
Q 022609 271 VHLDYE 276 (294)
Q Consensus 271 i~~ep~ 276 (294)
||+||+
T Consensus 81 Ih~ep~ 86 (94)
T 3byp_A 81 IHVEPE 86 (94)
T ss_dssp EEEEEC
T ss_pred EEeCCC
Confidence 999995
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.60 E-value=3.9e-15 Score=111.28 Aligned_cols=84 Identities=23% Similarity=0.426 Sum_probs=74.4
Q ss_pred cCCCCChH--HHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc-CCCcceEEE
Q 022609 195 VGQSAPPE--ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFV 271 (294)
Q Consensus 195 l~~~~~~~--~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~-~~~v~~v~i 271 (294)
||.+++++ ..++|++.+++.|||.++|++|+|+.|+.+++++||.+++++|+.+++++.+++++.|++ ++.+.++||
T Consensus 1 md~~~~~~~~~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtI 80 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTI 80 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCCCccHHHHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 46677888 999999999999999999999999999999999999999999999999999999999974 655899999
Q ss_pred EeeccCC
Q 022609 272 HLDYECD 278 (294)
Q Consensus 272 ~~ep~~~ 278 (294)
|+||...
T Consensus 81 hvEp~~~ 87 (107)
T 2zzt_A 81 HVEPLGN 87 (107)
T ss_dssp EEEETTC
T ss_pred EEecCCC
Confidence 9999753
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=97.59 E-value=3.2e-05 Score=67.23 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHHH
Q 022609 3 ISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLG 82 (294)
Q Consensus 3 is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~~ 82 (294)
+++++|..++....-.+-..+|.++.+|+.|...|+++++..+++.... -+|+..++++++++.+++++..+
T Consensus 116 ~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i~~~~ 187 (283)
T 3h90_A 116 VALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYILYSA 187 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHHHHHH
Confidence 4566677766666666777899999999999999999998766553222 25888999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCC
Q 022609 83 FQVLIEAVEKLVKDEPP 99 (294)
Q Consensus 83 ~~i~~~ai~~l~~~~~~ 99 (294)
+.++++++..|++..+.
T Consensus 188 ~~l~~~s~~~Ll~~~~~ 204 (283)
T 3h90_A 188 LRMGYEAVQSLLDRALP 204 (283)
T ss_dssp HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 99999999999987765
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=97.56 E-value=4.2e-05 Score=67.28 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHHHH
Q 022609 4 SNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGF 83 (294)
Q Consensus 4 s~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~ 83 (294)
++..+..+....--.+-..+|.++.+|+.|...|+++++..+++.... -||+..++++++++.+++++..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~--------~~g~~~~Dpi~ai~Ia~~I~~~~~ 197 (306)
T 3j1z_P 126 AIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLS--------QYGWWWADGLFAVLIACYIGQQAF 197 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSC--------CSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHH--------HhCcchhhhHHHHHHHHHHHHHHH
Confidence 444555555555555566789999999999999999998776664333 268899999999999999999999
Q ss_pred HHHHHHHHHhhcCCCC
Q 022609 84 QVLIEAVEKLVKDEPP 99 (294)
Q Consensus 84 ~i~~~ai~~l~~~~~~ 99 (294)
.++++++..|++..+.
T Consensus 198 ~l~~~s~~~Ll~~~~~ 213 (306)
T 3j1z_P 198 DLGYRSIQALLDRELD 213 (306)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCcccc
Confidence 9999999999997765
No 7
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=87.15 E-value=2.5 Score=29.80 Aligned_cols=69 Identities=7% Similarity=0.088 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccCCC
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDH 279 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~~~ 279 (294)
.++..+++.+.|.++||+ +++ ... +...-+-+.++-+.. .++.+.+ +.|++.|||..+...+...+.+
T Consensus 15 ~p~~~~~V~~~L~~ipgv-Ei~---~~~-~~~GkiVV~iEa~~~------~~l~~~i-~~I~~i~GVlst~lvy~~~e~~ 82 (95)
T 2jsx_A 15 KSERISDISTQLNAFPGC-EVA---VSD-APSGQLIVVVEAEDS------ETLIQTI-ESVRNVEGVLAVSLVYHQQEEQ 82 (95)
T ss_dssp CTTSHHHHHHHHTTSTTE-EEE---EEE-TTTTEEEEEEEESSH------HHHHHHH-HHHTTSTTEEEEEESSCCCCCC
T ss_pred CCCCHHHHHHHHHCCCCe-EEE---Eec-CCCCCEEEEEEeCCH------HHHHHHH-HHHhcCCCccEEeEEEEEeccc
Confidence 566789999999999987 442 221 212223334444322 4556655 8899999999888877765433
Q ss_pred C
Q 022609 280 K 280 (294)
Q Consensus 280 ~ 280 (294)
.
T Consensus 83 ~ 83 (95)
T 2jsx_A 83 G 83 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 8
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=84.05 E-value=2.4 Score=30.21 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcC--CC----cce---eeEEEEEEeCCeEEEEEEEEeC-CCCChhHHHHHHHHHHHHHhcCCCcceEEEE
Q 022609 203 ILQKLTYLVIRH--PE----VKR---IDTVRAYTFGVLYFVEVDIELP-EELPLKEAHAIGESLQNKIEKLPEVERAFVH 272 (294)
Q Consensus 203 ~~~~i~~~i~~~--~~----V~~---v~~~~~~~~g~~~~v~~~i~v~-~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~ 272 (294)
..++|+++++++ |+ +.+ ++++.+ .|+. +.+.+.+. +..+. ...+++.+++.+++.+|+.+|.++
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v--~~~~--V~v~l~lt~~~cp~--~~~l~~~i~~al~~l~gv~~V~V~ 80 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVV--EPPR--AYVRMTLTTPGCPL--HDSLGEAVRQALSRLPGVEEVEVE 80 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEE--ETTE--EEEEECCSSSSCCS--SCHHHHHHHHHHHTSTTCCEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEE--ECCE--EEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCceeEEEE
Confidence 456788888886 32 111 333333 2343 33444432 34443 578899999999988999988888
Q ss_pred eec
Q 022609 273 LDY 275 (294)
Q Consensus 273 ~ep 275 (294)
+..
T Consensus 81 l~~ 83 (103)
T 3cq1_A 81 VTF 83 (103)
T ss_dssp ECC
T ss_pred Eec
Confidence 764
No 9
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=83.59 E-value=3.4 Score=29.71 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcC--CCc-cee---eEEEEEEe-C-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHH-hcCCCcceEEEEe
Q 022609 203 ILQKLTYLVIRH--PEV-KRI---DTVRAYTF-G-VLYFVEVDIELPEELPLKEAHAIGESLQNKI-EKLPEVERAFVHL 273 (294)
Q Consensus 203 ~~~~i~~~i~~~--~~V-~~v---~~~~~~~~-g-~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l-~~~~~v~~v~i~~ 273 (294)
..++|.++++++ |+. .++ .-++-.+. | +...+.+.+.. +..+ ....+.+.+++.+ ++.+|+.+|.|++
T Consensus 9 ~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~-p~cp--~~~~i~~~i~~al~~~l~Gv~~V~V~l 85 (108)
T 3lno_A 9 FENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTS-IGCP--MAGQIVSDVKKVLSTNVPEVNEIEVNV 85 (108)
T ss_dssp HHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSC-TTCT--THHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred hHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECC-CCCc--HHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 467788888887 432 222 12222222 3 34444444444 3344 4578999999999 7899999888887
Q ss_pred ecc
Q 022609 274 DYE 276 (294)
Q Consensus 274 ep~ 276 (294)
..+
T Consensus 86 ~~~ 88 (108)
T 3lno_A 86 VWN 88 (108)
T ss_dssp CCS
T ss_pred Eec
Confidence 743
No 10
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=80.29 E-value=3.4 Score=29.32 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=41.7
Q ss_pred HHHHHHHHHcC--CCc-ce------eeEEEEEEeC-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEe
Q 022609 204 LQKLTYLVIRH--PEV-KR------IDTVRAYTFG-VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHL 273 (294)
Q Consensus 204 ~~~i~~~i~~~--~~V-~~------v~~~~~~~~g-~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ 273 (294)
.++|.++++++ |+. .+ ++++.+ .+ ++..+.+.+.. +..+ ....+++.+++.+++.+|+.+|.+++
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v--~~~~~V~v~l~lt~-~~cp--~~~~l~~~i~~al~~l~gv~~v~V~l 82 (103)
T 1uwd_A 8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQI--DDQNNVKVLMTMTT-PMCP--LAGMILSDAEEAIKKIEGVNNVEVEL 82 (103)
T ss_dssp HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEE--CTTCEEEEEECCSS-SCCS--SHHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred HHHHHHHHcCCCCCCCCcChhhcCCeeEEEE--cCCCEEEEEEEECC-CCCc--HHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 45778888777 321 12 334444 12 34334444433 3444 46889999999999989999888887
Q ss_pred ec
Q 022609 274 DY 275 (294)
Q Consensus 274 ep 275 (294)
..
T Consensus 83 ~~ 84 (103)
T 1uwd_A 83 TF 84 (103)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 11
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=80.09 E-value=4.4 Score=27.27 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
..+++.+.+.+.|+|.+++.+ .|+ ++.+ ++.+++. ++ +.+-+.+.+++.||+.++.-.+--+
T Consensus 14 ~~~~~~~~l~~~peV~e~~~v----tG~~D~ll--~v~~~d~---~~---l~~~i~~~l~~~~gV~~~~T~ivl~ 76 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVV----YGEYDLIV--KVETDTL---KD---LDQFITEKIRKMPEIQMTSTMIAIL 76 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEEC----BSSCSEEE--EEEESSH---HH---HHHHHHTTGGGCTTEEEEEEEEEEE
T ss_pred CHHHHHHHHhCCCCeeEEEEE----cccCCEEE--EEEECCH---HH---HHHHHHHHhccCCCEeEEEEEEEEe
Confidence 357899999999988766433 354 4444 4444333 33 3444555788889998777666544
No 12
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=76.50 E-value=17 Score=25.42 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEe
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHL 273 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ 273 (294)
.-+.|++++.+. |..++.++|+ |..+.+++ +.+ +.+++.+..+++.+++-..|-+.+.++++
T Consensus 32 qG~aV~~aL~~L-G~~~V~~VR~---GK~~el~~--~~~---~~~~a~~~v~~mc~kLLaNpVIE~y~ie~ 93 (94)
T 1vq3_A 32 RGETIERVLREE-KGLPVKKLRL---GKSIHLEV--EAE---NKEKAYEIVKKACEELLVNPVVEEYEVRE 93 (94)
T ss_dssp HHHHHHHHHHHT-TCCCEEEEEE---EEEEEEEE--ECS---SHHHHHHHHHHHHHHTTSCTTTEEEEEEE
T ss_pred HHHHHHHHHHHc-CCCccceeee---eeEEEEEe--cCC---CHHHHHHHHHHHHHHHcCCCcceEEEEEe
Confidence 346677888887 5567777776 55544444 333 23677777777777776667787766653
No 13
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=76.20 E-value=18 Score=25.54 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCC---hhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELP---LKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~---v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
-.+|++.+.++|+|.....+-+-.-+..-.+.+.++. ++.. ..+..++.+.+++.+++..++. ..|++-+
T Consensus 16 P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~~~-~~v~~v~ 88 (109)
T 3gxs_A 16 PIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEILVT-PRVKLVP 88 (109)
T ss_dssp HHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHSSC-CEEEEEC
T ss_pred HHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhCCc-eEEEEEC
Confidence 3677888888999876555555554444445566666 4432 3456778888888886433443 2444443
No 14
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=75.50 E-value=18 Score=25.34 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCC--CChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEE--LPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~--~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
.+|++.+.++|+|.+..-+-+-.-+..-...+.++..+. .+..+..++.+++++.+++..++. ..+++-+
T Consensus 17 ~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~-~~v~~v~ 88 (109)
T 3lax_A 17 IQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVT-PRVKLVP 88 (109)
T ss_dssp HHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSC-CEEEEEC
T ss_pred HHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCc-cceEEEc
Confidence 567788889999877665655555554455556665544 345566788889999887544543 2344443
No 15
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=74.07 E-value=6.8 Score=26.04 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
..+++.+.+.+.|+|.+++.+ .|+ ++. +++.+++. ++ +.+-+.+.+.+.||+.++.-++--
T Consensus 14 ~~~~~~~~l~~~peV~~~~~v----tG~~d~l--~~v~~~d~---~~---l~~~~~~~l~~~~gV~~~~t~ivl 75 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVV----YGVYDIV--VKVEADSM---DK---LKDFVTNTIRKLPKVRSTLTMIIV 75 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEEC----SSSCSEE--EEEECSSH---HH---HHHHHHHTGGGSTTEEEEEEEECC
T ss_pred CHHHHHHHHhCCCCeEEEEEE----eccCCEE--EEEEECCH---HH---HHHHHHHHhcCCCCEeEEEEEEEE
Confidence 357899999999987766433 354 444 44555333 33 334445678888999877766653
No 16
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=71.03 E-value=26 Score=26.11 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 198 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 198 ~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
..+++..+++.+.+.+.|+|.+++.+ .|+ ++.+.++.. ++. ++ +.+-+.+.+.+.+|+.++...+-
T Consensus 76 ~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~-~d~---~~---l~~~~~~~l~~~~gV~~~~t~iv 142 (151)
T 2dbb_A 76 SKVPSDADKVISEISDIEYVKSVEKG----VGRYNIIVRLLLP-KDI---KD---AENLISEFLQRIKNAENVEVILI 142 (151)
T ss_dssp ESSHHHHHHHHHHHTTCTTEEEEEEE----ESSCSEEEEEEEE-SSH---HH---HHHHHHHHHHTCCSEEEEEEEEE
T ss_pred EeCCCCHHHHHHHHHcCCCeEEEeEe----cCCCCEEEEEEEc-CCH---HH---HHHHHHHHhhcCCCeeEEEEEEE
Confidence 34666678999999999988777643 465 455444431 222 33 33344467778889876665554
No 17
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=67.62 E-value=9 Score=25.72 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=48.5
Q ss_pred HhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 192 VSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 192 ~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
..++.-.++++..+++.+.++-.+.|.. .+ +.+......=+.-+-++|+++-++.....++++..|.+
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR--~l-~vr~d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~ 74 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRR--VM-VVASTTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALEN 74 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEE--EE-EEECSSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHH--HH-HHhccCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 3445555688999999999988876643 33 33444433334566678999989999999999998864
No 18
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=66.01 E-value=34 Score=26.31 Aligned_cols=87 Identities=10% Similarity=-0.051 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCCcceee-EEEE-------EEeCCeE---EEEEEE--EeCCCCChhHHHHHHHHHHHHHhcCCCc--c
Q 022609 203 ILQKLTYLVIRHPEVKRID-TVRA-------YTFGVLY---FVEVDI--ELPEELPLKEAHAIGESLQNKIEKLPEV--E 267 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~-~~~~-------~~~g~~~---~v~~~i--~v~~~~~v~~~~~i~~~i~~~l~~~~~v--~ 267 (294)
+.+.|.+++.+. ++-... .+.+ |-+|... ++.++| .....-|.++-+++.+++.+.|+...++ .
T Consensus 42 L~~~It~alve~-g~P~~~v~V~i~e~~~~~~~~gg~~~~~~v~I~I~~~a~~gRt~eqK~~l~~~l~~~L~~~~gi~~~ 120 (161)
T 3c6v_A 42 LAQQITQAYVGF-GLPAFYVQVHFIEQPAGTSFIGGEQHPNFVALTIYHLARTMTSDEQRQGFLKRIDAFLTPMFEPKGI 120 (161)
T ss_dssp HHHHHHHHHHHT-TCCGGGCEEEEEECCTTSEEETTEECSSEEEEEEEEETTSCCSHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHHHh-CcChhhEEEEEEEeCccceeECCcccCCEEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 355666666665 542211 2222 3344322 466666 3366678888888888888888754444 3
Q ss_pred eEEEEeeccCCCCCcccccCCCCC
Q 022609 268 RAFVHLDYECDHKPEHTVLNKLPS 291 (294)
Q Consensus 268 ~v~i~~ep~~~~~~~~~~~~~~p~ 291 (294)
++.|.+.....++... -+..+|+
T Consensus 121 dv~I~I~E~~~e~Wsf-~G~~~P~ 143 (161)
T 3c6v_A 121 DWEYFVTEAPRDLWKI-NGLAPPA 143 (161)
T ss_dssp EEEEEEEEECGGGCEE-TTBCCCC
T ss_pred hEEEEEEEcCccceEE-CCCcCCC
Confidence 7888877555555555 4555654
No 19
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=64.24 E-value=5.4 Score=27.36 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
++...+++.+.+.+.|+|.+++.+ .|+ .+.+ ++.+++. ++.++ -+.+.+++.||+.++.-++-
T Consensus 11 ~~~~~~~~~~~l~~~peV~~~~~v----tG~~D~ll--~v~~~d~---~~l~~---~l~~~l~~~~gV~~~~T~iv 74 (92)
T 2djw_A 11 RGNRVQALGEAIAELPQVAEVYSV----TGPYDLVA--LVRLKDV---EELDD---VVTQGILSLEGVERTETLLA 74 (92)
T ss_dssp CGGGHHHHHHHHTTSTTEEEEEEE----SSSSSEEE--EEEESSG---GGHHH---HCCCCCTTSTTEEEEEEEEE
T ss_pred cCCCHHHHHHHHhcCCCeEEEEEe----ecCCCEEE--EEEECCH---HHHHH---HHHHhcccCCCEeEEEEEEE
Confidence 344578899999999988776543 354 4544 4444433 33322 23345667789876665554
No 20
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=57.48 E-value=31 Score=25.78 Aligned_cols=62 Identities=18% Similarity=0.112 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
+...+++.+.+.+.|+|.+++.+ .|+ ++++.+ .+++. .++.+-+.+.+.+.+|+.++...+-
T Consensus 79 ~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v--~~~d~------~~l~~~l~~~l~~~~gV~~~~t~iv 141 (152)
T 2cg4_A 79 AKDYPSALAKLESLDEVTEAYYT----TGHYSIFIKV--MCRSI------DALQHVLINKIQTIDEIQSTETLIV 141 (152)
T ss_dssp GGGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEE--EESCH------HHHHHHHHHTTTTSTTEEEEEEEEC
T ss_pred CCCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEE--EECCH------HHHHHHHHHHhhcCCCeeEEEEEEE
Confidence 33578899999999988777643 464 455544 44332 3344445567788889987766554
No 21
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=57.17 E-value=40 Score=22.47 Aligned_cols=69 Identities=7% Similarity=0.103 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccC
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 277 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~ 277 (294)
.+....+|.+.+.+.. .++.++.....++.....+.+++++. .+.+++.+++++.-+++ + +.+++.|.+
T Consensus 15 rpGila~vt~~la~~~--~NI~~i~~~~~~~~~~~~i~v~~~~~---~~l~~l~~~L~~~~~~~-~---~~~~~~~~~ 83 (91)
T 1zpv_A 15 KSGIVAGVSGKIAELG--LNIDDISQTVLDEYFTMMAVVSSDEK---QDFTYLRNEFEAFGQTL-N---VKINIQSAA 83 (91)
T ss_dssp CTTHHHHHHHHHHHTT--CEEEEEEEEEETTEEEEEEEEEESSC---CCHHHHHHHHHHHHHHH-T---EEEEEEEGG
T ss_pred CCCHHHHHHHHHHHcC--CCEEEEEeEEEcCEEEEEEEEEeCCC---CCHHHHHHHHHHHHHHc-C---CEEEEeeHH
Confidence 3567889999998874 47778877776666778888888764 34455666665443332 3 455566543
No 22
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=55.85 E-value=54 Score=23.82 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 199 APPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 199 ~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
.|.-+..++-+.+.+..|-.++.++.+-+.-+ .-++.+.|.-+.. +..++|.+++++.=...+...++.++.-|
T Consensus 13 iDSgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~---e~L~~Il~~L~~lGA~~~~~~da~l~~a~ 87 (118)
T 3mgj_A 13 IDSLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDE---RHVDEILNELRDLGAEIPEIEEVELQPAE 87 (118)
T ss_dssp TTSSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSH---HHHHHHHHHHHHHHHHCTTEEEEEECCSS
T ss_pred echhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCH---HHHHHHHHHHHHcCCcCCCCCCceEEEcc
Confidence 46668999999999999988888888855543 4567777777766 77777887776553445555555544333
No 23
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=53.04 E-value=63 Score=23.48 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEE--E-----EeCC----eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCC-----
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRA--Y-----TFGV----LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLP----- 264 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~--~-----~~g~----~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~----- 264 (294)
+++.+.+.+.+.+.. .....++|. + ..|. .-++.+++.+-++-|.++=+++.+.+-+.+++..
T Consensus 18 ~~L~~~lh~~l~~~~-~fp~~~ik~Ra~~~~~~~vg~~~~~~~fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~l~~~~~ 96 (125)
T 1otg_A 18 PGLFAKVNPTLAATG-IFPLAGIRSRVHWVDTWQMADGQHDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALME 96 (125)
T ss_dssp HHHHHHHHHHHHTTS-SSCGGGCEEEEEEESSEEETTSCSCEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHcC-CCCCcCceEeeEEcccEEEcCCCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 456777777777653 233333333 2 3332 2478888888888899999999999999997532
Q ss_pred -CcceEEEEeeccCCC
Q 022609 265 -EVERAFVHLDYECDH 279 (294)
Q Consensus 265 -~v~~v~i~~ep~~~~ 279 (294)
....++|+++..+.+
T Consensus 97 ~~~~~vsv~i~E~~~~ 112 (125)
T 1otg_A 97 SRLLALSFEIEELHPT 112 (125)
T ss_dssp TSEEEEEEEEEECCSS
T ss_pred CCceEEEEEEEEcCCc
Confidence 245677777754443
No 24
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=52.53 E-value=51 Score=22.23 Aligned_cols=61 Identities=8% Similarity=0.096 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
+.+++++.+. |..++.++|. |..+.+++ +.+ -+++.+..+++.+.+-..|-+++..+++++
T Consensus 20 ~av~~al~~L-G~~~v~~VR~---gK~~~l~~----~~~--~~~a~~~v~~~~~~LLaNpVie~y~~~~~~ 80 (84)
T 1t4a_A 20 SAVQHALHSM-TYNEVQDVRI---GKYMELTI----EKS--DRDLDVLVKEMCEKLLANTVIEDYRYEVEE 80 (84)
T ss_dssp HHHHHHHHHT-TCTTEEEEEE---EEEEEEEE----CCC--SSCHHHHHHHHHHHTTCCTTTEEEEEEEEC
T ss_pred HHHHHHHHHc-CCCChhheEE---EEEEEEEe----cCc--hHHHHHHHHHHHHHhcCCCcceEEEEEEEE
Confidence 4666777666 5556777766 55444443 332 245566666666666566778888877764
No 25
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=51.18 E-value=54 Score=22.15 Aligned_cols=62 Identities=8% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
+.+++.+.+. |. ++.++|. |+.+.++ ++.+ +-+++.+..+++.+.+-..|-+.+..+++++.
T Consensus 21 ~av~~al~~L-G~-~v~~VR~---gK~~~l~----~~~~-~~~~a~~~v~~~~~~LLaNpVie~~~~~~~~~ 82 (85)
T 1gtd_A 21 ATIERALALL-GY-EVEDTDT---TDVITFT----MDED-SLEAVEREVEDMCQRLLCNPVIHDYDVSINEM 82 (85)
T ss_dssp HHHHHHHHHH-TC-CCEEEEE---EEEEEEE----ECCS-CHHHHHHHHHHHHHHTTCCTTTEEEEEEEEEC
T ss_pred HHHHHHHHHc-CC-ChheEEE---EEEEEEE----ecCC-CHHHHHHHHHHHHHHhcCCCcceEEEEEEEEc
Confidence 4677777665 55 7777776 4444333 3333 33666777777777776667888888877753
No 26
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=48.39 E-value=59 Score=22.65 Aligned_cols=71 Identities=18% Similarity=0.133 Sum_probs=52.1
Q ss_pred HhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCC
Q 022609 192 VSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPE 265 (294)
Q Consensus 192 ~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~ 265 (294)
..++.-..|++..+++.+.++=.+.|...--+|+- ....=+.-+-++|+++-++.....+++++.+.+.-|
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e---~Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG 77 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVRRVMVVAST---TPGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGA 77 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECS---SSSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeecChhHHHHHHHHhccchhhhhhhheehh---hhhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34566677899999999999888877665555443 222234555689999999999999999999975433
No 27
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=47.79 E-value=32 Score=22.25 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=18.7
Q ss_pred CCCCCcchHHhHHHHHHHHHHHHHHHHHHHH
Q 022609 58 KYPIGKLRVQPVGIIIFAAIMATLGFQVLIE 88 (294)
Q Consensus 58 ~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~ 88 (294)
.|-|-|..+ .+++++.+.+++.+|+.++..
T Consensus 9 pF~YDY~tL-RigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 9 PFYYDWESL-QLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp GGGGGGHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccchHHh-eecchhhHHHHHHHHHHHHHc
Confidence 344444444 356777787777777776543
No 28
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=45.81 E-value=55 Score=24.73 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEE-------EEeCC----eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc-CCC---
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRA-------YTFGV----LYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPE--- 265 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~-------~~~g~----~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~-~~~--- 265 (294)
+++.+.|.+.+.+. +.....++|. +..|+ .-++.+.+.+-++-|.++-.++.+++-+.+++ ...
T Consensus 40 ~~l~~~vh~al~~~-g~fp~~diK~Ra~~~~~y~vg~~~~~~~FVhV~i~ll~GRt~EqK~~L~e~v~~al~~~l~~~~~ 118 (146)
T 3e6q_A 40 GELLEQANAALFAS-GQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDAATRQALGESLCEVLAGAVAGGGE 118 (146)
T ss_dssp HHHHHHHHHHHHHT-TSSCGGGCEEEEEEESSEEESSSSCCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHEEECSS
T ss_pred HHHHHHHHHHHHhc-CCCCccCeeEEEEEccceEEcCCCCCccEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCccC
Confidence 46788888888775 3334444443 23332 35788888888999999999999999999964 222
Q ss_pred -cceEEEEeecc
Q 022609 266 -VERAFVHLDYE 276 (294)
Q Consensus 266 -v~~v~i~~ep~ 276 (294)
...++|+++..
T Consensus 119 ~~~~lsVeI~E~ 130 (146)
T 3e6q_A 119 EGVQVSVEVREM 130 (146)
T ss_dssp SCEEEEEEEEEE
T ss_pred CceEEEEEEEEC
Confidence 23567776643
No 29
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=45.71 E-value=43 Score=22.50 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
+.+++.+.+. |..++.++|. |..+.++ ++.+ +-+++.+..+++.+.+-..|-+.+..+++++
T Consensus 20 ~av~~al~~l-G~~~v~~Vr~---gk~~~l~----~~~~-~~~~a~~~v~~~~~~LLaNpVie~y~~~~~~ 81 (83)
T 2yx5_A 20 RTIQRALNFL-GFNNVKEVQT---YKMIDII----MEGE-NEEKVKEEVEEMCKKLLANPVIHDYEIKVEK 81 (83)
T ss_dssp HHHHHHHHHT-TCTTCCCCCC---CEEEEEE----EC-C-CHHHHHHHHHHHHHHTTCCTTTEEEEEEEEE
T ss_pred HHHHHHHHHc-CCCChhhEEE---EEEEEEE----ecCC-CHHHHHHHHHHHHHHhccCCcceEEEEEEEE
Confidence 5677788766 4445555554 4444333 3332 3356666777777777666778888877764
No 30
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=45.07 E-value=53 Score=22.63 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHH-hcCCCcceEEEEeecc
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKI-EKLPEVERAFVHLDYE 276 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l-~~~~~v~~v~i~~ep~ 276 (294)
+.+.+++.+. |..++.++|+ |..+.+++ + .+ +-+++.+..+++.+.+ -..|-+++..+++++.
T Consensus 24 ~av~~al~~L-G~~~V~~VR~---gK~~~l~~--~--~~-~~~~a~~~v~~~~~~LrLaNpVie~y~~~~~~~ 87 (92)
T 2zw2_A 24 ETIQRYVVSR-FSDKIIETRA---GKYLVFRV--N--SS-SQQEATELVKKLADEMRLYNPIVHKIEIRANRI 87 (92)
T ss_dssp HHHHHHTHHH-HCTTEEEEEE---EEEEEEEE--E--CS-SHHHHHHHHHHHHHHTTSSCTTTEEEEEEEEEE
T ss_pred HHHHHHHHHc-CCCChhheEE---EEEEEEEe--c--CC-CHHHHHHHHHHHHhhccccCcceeEEEEEEEec
Confidence 4566666555 4445666655 44444433 2 22 3366777788888887 4667888888888754
No 31
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=44.79 E-value=51 Score=23.60 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHcC-CCcceeeEEEEEEe--CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceE
Q 022609 200 PPEILQKLTYLVIRH-PEVKRIDTVRAYTF--GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERA 269 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~-~~V~~v~~~~~~~~--g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v 269 (294)
.++..+.|.+.+++. |+-.++ ..+.. |+...+.+.+.+.+. + -.+.+-+.|++.++|..|
T Consensus 46 ~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~---e----Qv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 46 LPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHI---E----QVETLYEELGKIDIVRMV 108 (109)
T ss_dssp CTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSH---H----HHHHHHHHHSCSSSCEEE
T ss_pred cHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCH---H----HHHHHHHHHhcCCCEEEe
Confidence 456788899998886 422233 33333 444446666555443 3 366777788777777643
No 32
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=44.67 E-value=29 Score=21.46 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=29.9
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCC--cceEEEEeeccC
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPE--VERAFVHLDYEC 277 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~--v~~v~i~~ep~~ 277 (294)
++|.+.+..|.++-.++.+++-+.+.+..| ..++.|.++...
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~ 47 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVR 47 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcC
Confidence 455555667888888999999999965333 357888887653
No 33
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=44.66 E-value=1e+02 Score=23.60 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=39.4
Q ss_pred ceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHh
Q 022609 218 KRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE 261 (294)
Q Consensus 218 ~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~ 261 (294)
.++.++.+.+.|+...+.+.|.-+.+.++++-.++.+.+...|.
T Consensus 26 ~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 26 FELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLD 69 (164)
T ss_dssp SEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTT
T ss_pred cEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 67889998888999889999988888999999999999999987
No 34
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=44.10 E-value=51 Score=24.52 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 199 APPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 199 ~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
.+++..+++.+.+.+.|+|..++.+ .|+ ++++. +..++. ++.+ +-+ +.+.+.+|+.++...+--+
T Consensus 75 ~~~~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~--v~~~d~---~~l~---~~~-~~l~~~~gV~~~~t~ivl~ 140 (151)
T 2cyy_A 75 VKAGKYSEVASNLAKYPEIVEVYET----TGDYDMVVK--IRTKNS---EELN---NFL-DLIGSIPGVEGTHTMIVLK 140 (151)
T ss_dssp ECTTCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEE--EEESSH---HHHH---HHH-HHHHTSTTEEEEEEEECCC
T ss_pred ECcccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEE--EEECCH---HHHH---HHH-HHHhCCCCEeEEEEEEEEE
Confidence 3456678999999999988776542 365 45554 444333 3333 334 6677788998777766643
No 35
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=43.56 E-value=59 Score=24.02 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
++..+++.+.+.+.|+|.+++. ..|+ ++++ ++..++. .++.+-+.+.+.+.+|+.++...+--+
T Consensus 75 ~~~~~~~~~~l~~~p~V~~~~~----~tG~~d~~~--~v~~~d~------~~l~~~l~~~l~~~~gV~~~~t~ivl~ 139 (150)
T 2pn6_A 75 KNYHVELGNKLAQIPGVWGVYF----VLGDNDFIV--MARYKTR------EEFMEKFLERVMSIPEVERTSTQVVVK 139 (150)
T ss_dssp TTHHHHHHHHHHTSTTEEEEEE----CSSSCSEEE--EEEESSH------HHHHHHTHHHHTTCTTEEEEEEEECSC
T ss_pred hhHHHHHHHHHhcCchhhhhhh----hcCcCCEEE--EEEECCH------HHHHHHHHHHhccCCCeeEEEEEEEEE
Confidence 5678899999999998876653 2354 4444 4444333 334444556788889998777666543
No 36
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=40.06 E-value=87 Score=24.54 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeC------CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcC
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFG------VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKL 263 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g------~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~ 263 (294)
.+.++.+|.+.+.+.. .+|.+++....+ +..++.+.+..+++ .. .++++.+.+..+++
T Consensus 103 rpGiva~Vt~~La~~g--~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~---~~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 103 SEGIVEAVTAVLAKKG--ANIVELETETLPAPFAGFTLFRMGSRVAFPFP---LY-QEVVTALSRVEEEF 166 (195)
T ss_dssp CTTHHHHHHHHHHHTT--CEEEEEEEEEEECSSTTCEEEEEEEEEEEEGG---GH-HHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcC--CCEEEceeeecccccCCCCeEEEEEEEEcCCC---cc-HHHHHHHHHHHHHc
Confidence 4678999999999985 578888777665 35667777777643 34 66777776555543
No 37
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=39.89 E-value=1.7e+02 Score=24.54 Aligned_cols=76 Identities=13% Similarity=0.039 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHcCCCcce--eeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcC---CCcceEEEEee
Q 022609 201 PEILQKLTYLVIRHPEVKR--IDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKL---PEVERAFVHLD 274 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~--v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~---~~v~~v~i~~e 274 (294)
+...+.+++.+++.|++.. --.+++...|+ .....+.+-+++.--.+-..++.+++.+.+++. ...-+-++|++
T Consensus 199 ~~v~~~l~~~~~~~~~vl~~p~p~v~v~~~~~~~i~~~v~~~~~~~~~~~~~~~l~~~i~~~~~~~gI~ip~P~~~v~~~ 278 (286)
T 2vv5_A 199 DQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFK 278 (286)
T ss_dssp HHHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHhCcccccCCCCEEEEEEecCCeEEEEEEEEEccchHHHHHHHHHHHHHHHHHHCCCcCCCCceEEEec
Confidence 3446667788888887643 23567777776 455566655554322233356666676777421 11224566665
Q ss_pred cc
Q 022609 275 YE 276 (294)
Q Consensus 275 p~ 276 (294)
..
T Consensus 279 ~~ 280 (286)
T 2vv5_A 279 RV 280 (286)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 38
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=39.29 E-value=78 Score=20.60 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEE
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 271 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i 271 (294)
+....+|.+.+.+.. .++.+++....++...+.+.+++++. + -.+++.+.|++.+++.++..
T Consensus 16 ~G~L~~I~~~la~~~--inI~~i~~~~~~~~~~~~i~v~~~~~---~----~l~~l~~~L~~~~~V~~v~~ 77 (88)
T 2ko1_A 16 NGMTNQITGVISKFD--TNIRTIVLNAKDGIFTCNLMIFVKNT---D----KLTTLMDKLRKVQGVFTVER 77 (88)
T ss_dssp TTHHHHHHHHHTTSS--SCEEEEEEEECSSEEEEEEEEEESSH---H----HHHHHHHHHTTCTTEEEEEE
T ss_pred CcHHHHHHHHHHHCC--CCeEEEEEEEcCCEEEEEEEEEECCH---H----HHHHHHHHHhcCCCceEEEE
Confidence 457888999888864 57888888766553445555666432 2 24577778888889887643
No 39
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=39.04 E-value=41 Score=21.22 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=31.6
Q ss_pred EEEEeCC---CCChhHHHHHHHHHHHHHhcCCC--cceEEEEeeccCCCC
Q 022609 236 VDIELPE---ELPLKEAHAIGESLQNKIEKLPE--VERAFVHLDYECDHK 280 (294)
Q Consensus 236 ~~i~v~~---~~~v~~~~~i~~~i~~~l~~~~~--v~~v~i~~ep~~~~~ 280 (294)
++|.+.+ ..|.++-.++.+++.+.+.+..| ..+++|.++....++
T Consensus 3 i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~ 52 (67)
T 3m21_A 3 INIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNN 52 (67)
T ss_dssp EEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTT
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHH
Confidence 4566666 78999999999999999964222 346777777654333
No 40
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=38.96 E-value=25 Score=21.47 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=29.1
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcC--CCcceEEEEeeccC
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKL--PEVERAFVHLDYEC 277 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~--~~v~~v~i~~ep~~ 277 (294)
++|.+.++.+.++-.++.+.+.+.+.+. ....++++.+++..
T Consensus 6 i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~ 49 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMK 49 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcC
Confidence 4555556678888899999999998642 23357777777543
No 41
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=38.93 E-value=87 Score=21.07 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=26.9
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHh-cCCCc-ceEEEE
Q 022609 234 VEVDIELPEELPLKEAHAIGESLQNKIE-KLPEV-ERAFVH 272 (294)
Q Consensus 234 v~~~i~v~~~~~v~~~~~i~~~i~~~l~-~~~~v-~~v~i~ 272 (294)
|++.+.-...++..-...+..++.++++ ++|.. .+|.|.
T Consensus 3 VEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr 43 (81)
T 1ghh_A 3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVR 43 (81)
T ss_dssp EEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEE
T ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEEe
Confidence 3444433446787888999999999997 57775 255544
No 42
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=37.57 E-value=28 Score=22.44 Aligned_cols=41 Identities=7% Similarity=0.083 Sum_probs=28.9
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCC--cceEEEEeecc
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPE--VERAFVHLDYE 276 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~--v~~v~i~~ep~ 276 (294)
++|.+.++.|.++-.++.+++-+.+.+..| ..+++|.++..
T Consensus 4 I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~ 46 (72)
T 3mb2_A 4 LRITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEV 46 (72)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEc
Confidence 445555678889999999999999964222 34777777754
No 43
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=37.52 E-value=61 Score=24.88 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 199 APPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 199 ~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
.+++..+++.+.+.+.|+|..++.+ .|+ ++++ .+.+++. ++.++ -+ +.+.+.+|+.++...+--+
T Consensus 95 ~~~~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~--~v~~~d~---~~l~~---~l-~~l~~~~gV~~~~t~ivl~ 160 (171)
T 2e1c_A 95 VKAGKYSEVASNLAKYPEIVEVYET----TGDYDMVV--KIRTKNS---EELNN---FL-DLIGSIPGVEGTHTMIVLK 160 (171)
T ss_dssp ECTTCHHHHHHHHHTSTTEEEEEEC----SSSSSEEE--EEEESSH---HHHHH---HH-HHHHHSTTEEEEEEEECSC
T ss_pred ECcchHHHHHHHHhcCcCeEEEEEe----eCCCCEEE--EEEECCH---HHHHH---HH-HHHhcCCCcceEEEEEEEE
Confidence 3456678999999999988776542 364 4554 4444333 44333 33 5677778998777666543
No 44
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=35.99 E-value=83 Score=23.61 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 202 EILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 202 ~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
+..+++.+.+.+.|+|..++. ..|+ ++.+ ++..++. ++ +.+-+.+.+++.+|+.++...+-
T Consensus 83 ~~~~~~~~~l~~~peV~~~~~----vtG~~d~~~--~v~~~d~---~~---l~~~l~~~l~~~~gV~~~~t~iv 144 (162)
T 2p5v_A 83 DAREDFAASVRKWPEVLSCFA----LTGETDYLL--QAFFTDM---NA---FSHFVLDTLLSHHGVQDAQSSFV 144 (162)
T ss_dssp THHHHHHHHHTTCTTEEEEEE----ESSSCSEEE--EEEESSH---HH---HHHHHHHTTTTSTTEEEEEEEEE
T ss_pred hHHHHHHHHHhcChhhhEeee----ecCCCCEEE--EEEECCH---HH---HHHHHHHHhhcCCCeeEEEEEEE
Confidence 458889999999998876654 2354 4544 4444333 33 34444567777889876655544
No 45
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=35.95 E-value=1.1e+02 Score=23.35 Aligned_cols=58 Identities=10% Similarity=0.164 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 203 ILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 203 ~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
..+++.+.+.+.|+|..++ ..|+ ++.+. +.+++. ++ +.+-+.+.+.+.+||.++. .+-
T Consensus 96 ~~~~~~~~l~~~peV~~~~-----vtG~~dll~~--v~~~d~---~~---l~~~l~~~l~~~~gV~~~~-~iv 154 (171)
T 2ia0_A 96 YISYISSTLSALPGVLFVA-----KSGEDKIIAL--VGKNNK---DE---LVKFIEENITSIPNLKHIQ-IFP 154 (171)
T ss_dssp HHHHHHHHHHTSTTEEEEE-----EETTTEEEEE--EEESST---TH---HHHHHHHHTTTSTTEEEEE-EEE
T ss_pred HHHHHHHHHHCCCCeEEEE-----EcCCCCEEEE--EEECCH---HH---HHHHHHHHhhcCCCeeEEE-EEE
Confidence 6888999999999877665 3465 55554 444333 33 3444456788889998777 654
No 46
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=35.60 E-value=1.4e+02 Score=26.19 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCCh---hHHHHHHHHHHHHHhcC
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPL---KEAHAIGESLQNKIEKL 263 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v---~~~~~i~~~i~~~l~~~ 263 (294)
..+|++.+.+.|+|.+.-.+-...-+..-.+.+.++.+ +.+. .+..++.+.+++.+.++
T Consensus 343 p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~ 404 (436)
T 3qov_A 343 PMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDE 404 (436)
T ss_dssp HHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHh
Confidence 47889999999998766555454444444455555555 3322 24677888888888643
No 47
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=34.76 E-value=32 Score=21.55 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=29.1
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCC--cceEEEEeeccC
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPE--VERAFVHLDYEC 277 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~--v~~v~i~~ep~~ 277 (294)
++|.+.++.|.++-.++.+.+.+.+.+..| ..+++|.++...
T Consensus 3 i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~ 46 (65)
T 3ry0_A 3 IRVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETP 46 (65)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcC
Confidence 345555778989999999999999964222 346666666543
No 48
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=34.09 E-value=34 Score=20.85 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=28.4
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCC--CcceEEEEeecc
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLP--EVERAFVHLDYE 276 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~--~v~~v~i~~ep~ 276 (294)
++|.+.++.|.++-.++.+++.+.+.+.. ...++.|.+...
T Consensus 3 i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~ 45 (61)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEM 45 (61)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEc
Confidence 45555566788888999999999996422 234677776654
No 49
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=33.00 E-value=69 Score=22.35 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=22.8
Q ss_pred EEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 022609 232 YFVEVDIELPEELPLKEAHAIGESLQNKI 260 (294)
Q Consensus 232 ~~v~~~i~v~~~~~v~~~~~i~~~i~~~l 260 (294)
+.+.+++.++++++.+++.+++.+=++.-
T Consensus 3 FlV~m~V~~P~~~~~~~~~~~~a~Eka~a 31 (96)
T 1mli_A 3 FHVKMTVKLPVDMDPAKATQLKADEKELA 31 (96)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999888876544443
No 50
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=32.96 E-value=37 Score=21.10 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=28.6
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCC--cceEEEEeeccC
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPE--VERAFVHLDYEC 277 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~--v~~v~i~~ep~~ 277 (294)
++|.+ +..|.++-.++.+++-+.+.+..| ..+++|.++...
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~ 45 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHEPP 45 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCC
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeC
Confidence 45566 778989999999999998864222 246677766543
No 51
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=32.87 E-value=1.5e+02 Score=27.70 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHH-----HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcC
Q 022609 146 DVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTIT-----NWSETVMENAVSLVGQSAPPEILQKLTYLVIRH 214 (294)
Q Consensus 146 d~~~s~~~~i~~~~~~~~~~~~D~~~si~i~~~i~~-----~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~ 214 (294)
|++...+.+++.+++....+.+-++++++-.++=+. ..|..+++....|+++..++...++....++.+
T Consensus 5 ~~v~~~i~i~~~ilg~~~vP~vg~~~~~~s~l~~~lwp~~~~~w~~~~~~ve~lIdq~I~~~~~~~a~~~l~gl 78 (589)
T 3eb7_A 5 DAVKTAISLVGTILGKLGVPLVGPIVSLYSTLIDVLWPGGKSQWEIFMEQVEALINQKIAEYARAKALAELEGL 78 (589)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666566666665444444444444322221111 236778888999999988887777777666655
No 52
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=32.84 E-value=31 Score=21.06 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=28.4
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCC--CcceEEEEeecc
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLP--EVERAFVHLDYE 276 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~--~v~~v~i~~ep~ 276 (294)
++|.+.++.|.++-.++.+.+.+.+.+.. ...++.|.++..
T Consensus 3 i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~ 45 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEM 45 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEe
Confidence 45555566788998999999999996422 234677776654
No 53
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=32.82 E-value=81 Score=22.86 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
+++..+++.+.+.+.|+|..++.. .|+ ++++ ++..++. ++ +.+-+.+.+++.+|+.++...+-
T Consensus 73 ~~~~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~--~v~~~d~---~~---l~~~~~~~l~~~~gV~~~~t~iv 136 (141)
T 1i1g_A 73 KPEKLFEVAEKLKEYDFVKELYLS----SGDHMIMA--VIWAKDG---ED---LAEIISNKIGKIEGVTKVCPAII 136 (141)
T ss_dssp CGGGHHHHHHHHHHSTTEEEECCC----SSSSSEEE--EEEESSH---HH---HHHHHHHTTTTSTTEEEEEEEEC
T ss_pred CchhHHHHHHHHhcCCCeEEEEEe----cCCCCEEE--EEEECCH---HH---HHHHHHHHhhcCCCEeEEEEEEE
Confidence 456678899999999988777543 354 4444 4444332 33 33344467778889887766554
No 54
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=32.46 E-value=48 Score=24.16 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 246 LKEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 246 v~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
.+.++.+.+.|++.++.+|-+.+++|+++
T Consensus 40 ~eta~sLE~AIE~si~~QP~v~~v~V~I~ 68 (121)
T 2i52_A 40 SENASMAEEFIERSTMIQPFVENVRISIN 68 (121)
T ss_dssp TTTHHHHHHHHHHHHTTSTTEEEEEEEEC
T ss_pred cccHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 35677888899999999999999999997
No 55
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.26 E-value=1.7e+02 Score=21.97 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
++..+++.+.+.+.|+|.+++. ..|+ .+.+.+. +++. ++.++ -+.+.+++.+ |.++...+--
T Consensus 76 ~~~~~~~~~~l~~~peV~~~~~----vtG~~D~~l~v~--~~d~---~~l~~---~l~~~l~~~~-V~~~~T~ivl 138 (162)
T 3i4p_A 76 IEWLKRFSEVVSEFPEVVEFYR----MSGDVDYLLRVV--VPDI---AAYDA---FYKRMIAKIE-IRDVSSAFAM 138 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE----CCSSCSEEEEEE--ESSH---HHHHH---HHHHHHHHCC-CSEEEEEECS
T ss_pred hHHHHHHHHHHhcCCCEEEeee----cCCCCCEEEEEE--ECCH---HHHHH---HHHHHhhcCC-eeEEEEEEEE
Confidence 3568899999999999877654 2465 4555444 4322 44444 4445556667 7777666653
No 56
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=30.94 E-value=33 Score=22.48 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=28.6
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCC--CcceEEEEeecc
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLP--EVERAFVHLDYE 276 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~--~v~~v~i~~ep~ 276 (294)
++|.+.++.|.++-.++.+.+.+.+.+.. ...+++|.++..
T Consensus 4 I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E~ 46 (76)
T 3ej9_A 4 ISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREG 46 (76)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEe
Confidence 45556567888999999999999996422 234666666643
No 57
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=30.13 E-value=58 Score=23.70 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHhcCCCcceEEEEee
Q 022609 247 KEAHAIGESLQNKIEKLPEVERAFVHLD 274 (294)
Q Consensus 247 ~~~~~i~~~i~~~l~~~~~v~~v~i~~e 274 (294)
+.++.+.+.|++.++.+|-+.+++|+++
T Consensus 46 eta~sLE~AIE~si~~QP~v~~v~V~I~ 73 (122)
T 2ogf_A 46 YNKESLERAIEEAMKNQPCVYDIKVKIR 73 (122)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEEC
T ss_pred ccHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 5677888899999999999999999997
No 58
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=28.91 E-value=1.3e+02 Score=23.94 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=34.5
Q ss_pred eeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCc-ceEEEEeecc
Q 022609 219 RIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEV-ERAFVHLDYE 276 (294)
Q Consensus 219 ~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v-~~v~i~~ep~ 276 (294)
++.|+-+.--++.+.|- |. .+.++-.++.+|.+-+.+... + .+|.|+++|.
T Consensus 145 GF~DAVV~i~dd~V~VV--Vk-a~~Ls~~eaaqI~DIV~r~tg----v~~dV~Vqf~p~ 196 (197)
T 3tuf_A 145 GYEDALVNAEGDKINIT--VK-SDKHSKSKATAIIDLVAKEIK----TMKDVAVTFEPS 196 (197)
T ss_dssp TCSCEEEECSSSEEEEE--EE-CSCCCHHHHHHHHHTSCHHHH----TTSEEEEEEECC
T ss_pred CCCceEEEecCCEEEEE--Ee-CCCCCHHHHHHHHHHHHHhhC----CCCceEEEeeeC
Confidence 35566555555544333 33 477898998888888877774 4 4699999984
No 59
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=28.77 E-value=2e+02 Score=22.04 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEE
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAF 270 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~ 270 (294)
.+....+|...+.+.. .++..+.+....+.-...+.+.++.+ .+..+.+.+++++.++|.+|.
T Consensus 13 rpGvLarIt~lfs~rg--~NI~Sl~v~~t~d~~~sriti~V~~d------~~~leqI~kqL~Kl~dV~~V~ 75 (164)
T 2f1f_A 13 ESGALSRVIGLFSQRG--YNIESLTVAPTDDPTLSRMTIQTVGD------EKVLEQIEKQLHKLVDVLRVS 75 (164)
T ss_dssp CTTHHHHHHHHHHTTT--CCCSEEEEEECSCSSEEEEEEEEESC------HHHHHHHHHHHHHSTTEEEEE
T ss_pred CCcHHHHHHHHHHHCC--CCeeeceeeecCCCCEEEEEEEEecc------HHHHHHHHHHHcCCCCEEEEE
Confidence 3567888999888874 57888888655432234445555433 456677777787777877665
No 60
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=26.89 E-value=1.4e+02 Score=19.87 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeec
Q 022609 205 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 275 (294)
Q Consensus 205 ~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep 275 (294)
+.+++.+.+. |.. +.++|. |..+.++.. .+ +-+++.+..+++. .+-..|-+++..++++.
T Consensus 22 ~av~~al~~L-G~~-v~~VR~---gK~~~l~~~--~~---~~~~a~~~v~~~~-~LLaNpVie~y~~~~~~ 81 (84)
T 2dgb_A 22 RAVEGVLKDL-GHP-VEEVRV---GKVLEIVFP--AE---NLLEAEEKAKAMG-ALLANPVMEVYALEALK 81 (84)
T ss_dssp HHHHHHHHHT-TCC-CSEEEE---EEEEEEEEE--CS---SHHHHHHHHHHHH-HHHSCTTTEEEEEEEEE
T ss_pred HHHHHHHHHC-CCC-hhhEEE---EEEEEEEec--CC---CHHHHHHHHHHHH-HHhCCccceEEEEEEec
Confidence 4677777776 444 777766 544444442 22 2255566666666 56556778887877764
No 61
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=26.69 E-value=80 Score=22.23 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=31.8
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 234 VEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 234 v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
..+++..+ --|++|=-.+.+.+.+++++.++++ .-+++..
T Consensus 8 l~~~l~l~-~~SLKeKR~vvksl~~rlr~rFnVS--vAEv~~q 47 (102)
T 1j27_A 8 YTARLETP-ARSLKEKRALIKPALERLKARFPVS--AARLYGL 47 (102)
T ss_dssp EEEEEECC-CSSHHHHHHHHHHHHHHHHHHSSCE--EEEEECT
T ss_pred EEEEEEEe-CCChHHhHHHHHHHHHHHhhcCCeE--EEEecCc
Confidence 56777788 8899999999999999998877875 3345554
No 62
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=26.44 E-value=1.8e+02 Score=20.82 Aligned_cols=41 Identities=10% Similarity=-0.064 Sum_probs=31.1
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeecc
Q 022609 236 VDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 276 (294)
Q Consensus 236 ~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~ 276 (294)
+-..+.++.+.++..++.+.+++...+.|++.+..+-.+..
T Consensus 25 VlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~ 65 (120)
T 3bde_A 25 VVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQIS 65 (120)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCC
Confidence 33456788888888889888887777899998777665543
No 63
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.56 E-value=67 Score=21.14 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=19.6
Q ss_pred CCCCCCcchHHhHHHHHHHHHHHHHHHHHHH
Q 022609 57 YKYPIGKLRVQPVGIIIFAAIMATLGFQVLI 87 (294)
Q Consensus 57 ~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~ 87 (294)
..|-|-|.++ .+++++.+.+++.+|+.++.
T Consensus 10 dpF~YDY~tL-RigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 10 ERFTYDYYRL-RVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGCCCHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHh-eeccchhHHHHHHHHHHHHH
Confidence 4455555554 35777888877777777653
No 64
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=24.81 E-value=1.7e+02 Score=20.05 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=38.4
Q ss_pred HHHHHHHHHcC-CCcceeeEEEEEEeCC-eEEEEEEEEeCCC-C-ChhHHHHHHHHHHHHHhcCCCcceEEEE
Q 022609 204 LQKLTYLVIRH-PEVKRIDTVRAYTFGV-LYFVEVDIELPEE-L-PLKEAHAIGESLQNKIEKLPEVERAFVH 272 (294)
Q Consensus 204 ~~~i~~~i~~~-~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~-~-~v~~~~~i~~~i~~~l~~~~~v~~v~i~ 272 (294)
.+++.+.+++. +.-......+..-.|= -..+.+.+.++++ . + .+.+++.++++.+|.++.|.
T Consensus 21 l~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~-------tD~lee~i~~~e~VqSvdV~ 86 (91)
T 2yy3_A 21 LDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYS-------FDEVAEKFEEVENVESAEVE 86 (91)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCC-------HHHHHHHHHHSTTEEEEEEE
T ss_pred HHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccc-------cHHHHHHHhcCCCceEEEEE
Confidence 44555555443 2225677777777773 4567888888654 2 3 45566667766678877764
No 65
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=24.79 E-value=3.4e+02 Score=23.61 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCC--hhHHHHHHHHHHHHHhc
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELP--LKEAHAIGESLQNKIEK 262 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~--v~~~~~i~~~i~~~l~~ 262 (294)
-.+|++.+.+.|+|.+.-.+-+..-+..-.+.+.++.+++.+ ..+..++.+.+++.+.+
T Consensus 345 p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~ 405 (437)
T 2y27_A 345 PTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKS 405 (437)
T ss_dssp HHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHH
Confidence 467888999999987766555544444444566666665543 13456788888888864
No 66
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=24.21 E-value=1.2e+02 Score=22.21 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=35.5
Q ss_pred EEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCc--ceEEEEeeccCCCC
Q 022609 232 YFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEV--ERAFVHLDYECDHK 280 (294)
Q Consensus 232 ~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v--~~v~i~~ep~~~~~ 280 (294)
-++-++|..-++.|.++=.++.+++-+.+ +..|+ .+|.|.++....++
T Consensus 64 ~~v~I~I~~~~gRt~EqK~~L~~~it~~l-~~lg~~~~~v~V~i~E~~~~~ 113 (136)
T 3mlc_A 64 SVVIIHVFTQAGRTIETKQRVFAAITESL-APIGVAGSDVFIAITENAPHD 113 (136)
T ss_dssp CCEEEEEEEETTCCHHHHHHHHHHHHHHH-TTTTCCGGGEEEEEEEECGGG
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHHHHH-HHcCCCcccEEEEEEEcCHHH
Confidence 45667777666678899899999999999 75555 48888887654343
No 67
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=23.93 E-value=79 Score=20.42 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=29.2
Q ss_pred EEEEeCCCC-ChhHHHHHHHHHHHHHhcCC--CcceEEEEeeccC
Q 022609 236 VDIELPEEL-PLKEAHAIGESLQNKIEKLP--EVERAFVHLDYEC 277 (294)
Q Consensus 236 ~~i~v~~~~-~v~~~~~i~~~i~~~l~~~~--~v~~v~i~~ep~~ 277 (294)
++|.+.++. |.++-.++.+.+.+.+.+.. ...++.|.++...
T Consensus 3 I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~ 47 (76)
T 1gyx_A 3 IDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQ 47 (76)
T ss_dssp EEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCCceEEEEEEEeC
Confidence 456655555 88999999999999996422 2357777776543
No 68
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=23.77 E-value=1.3e+02 Score=20.63 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCCh----hHHHHHHHHHHHHH
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPL----KEAHAIGESLQNKI 260 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v----~~~~~i~~~i~~~l 260 (294)
+.-...+|++-+++.-.-..+.++.+.+......+.+|..-|... + .+..++...+++.+
T Consensus 5 ~gv~~~~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tarPg~v-IGkkG~~Ie~L~~~l~k~~ 68 (92)
T 1wh9_A 5 SSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV-LGEKGRRIRELTAVVQKRF 68 (92)
T ss_dssp SCSHHHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHH-HCGGGHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCCCceE-EcCCcHHHHHHHHHHHHHh
Confidence 444466777777664222478899999988888888887654221 2 34566666666655
No 69
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=22.64 E-value=4.3e+02 Score=23.83 Aligned_cols=65 Identities=11% Similarity=0.150 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc-CCC
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPE 265 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~-~~~ 265 (294)
++..+++++...+...--...+++.+..|+.+++.+.+..-+-|=-.=.....+.+.+.|++ +++
T Consensus 178 ~~~~~~l~~~~~stsr~g~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~ 243 (441)
T 2r4f_A 178 SEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPE 243 (441)
T ss_dssp HHHHHHHHHHHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHhhhcccccccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCC
Confidence 34556666666666444567888888889988888888887777666777778888888864 554
No 70
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=22.20 E-value=1e+02 Score=21.46 Aligned_cols=46 Identities=7% Similarity=0.037 Sum_probs=32.3
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCc--ceEEEEeeccCCC
Q 022609 234 VEVDIELPEELPLKEAHAIGESLQNKIEKLPEV--ERAFVHLDYECDH 279 (294)
Q Consensus 234 v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v--~~v~i~~ep~~~~ 279 (294)
+.++|..-++.+.++-.++.+++.+.+++..|+ .++.|.+.....+
T Consensus 57 ~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~ 104 (113)
T 1hfo_A 57 AFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGD 104 (113)
T ss_dssp EEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGG
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHH
Confidence 455666667788888888999999988643333 5788888765433
No 71
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=21.30 E-value=4.1e+02 Score=23.12 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCC--CC--ChhHHHHHHHHHHHHHhc
Q 022609 204 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPE--EL--PLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 204 ~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~--~~--~v~~~~~i~~~i~~~l~~ 262 (294)
-.+|++.+.+.|+|.+.-.+-+..-+..-.+.+.++.++ +. +..+..++.+.+++.+.+
T Consensus 347 p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 409 (443)
T 2y4o_A 347 PSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT 409 (443)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHH
Confidence 467889999999887655554444433334555666654 21 224456788888888864
No 72
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=21.23 E-value=1.1e+02 Score=21.36 Aligned_cols=46 Identities=7% Similarity=-0.002 Sum_probs=32.3
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHhcCCC--cceEEEEeeccCCC
Q 022609 234 VEVDIELPEELPLKEAHAIGESLQNKIEKLPE--VERAFVHLDYECDH 279 (294)
Q Consensus 234 v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~--v~~v~i~~ep~~~~ 279 (294)
+.++|..-++.+.++-.++.+++.+.+++..| ..++.|.+.....+
T Consensus 58 ~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~ 105 (115)
T 1uiz_A 58 AVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAA 105 (115)
T ss_dssp EEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGG
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHH
Confidence 45566666778888888899999998864333 35788888765433
No 73
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=20.98 E-value=2.2e+02 Score=20.74 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHcCCCcceeeEEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHhc
Q 022609 200 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEK 262 (294)
Q Consensus 200 ~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~-~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~ 262 (294)
..++.+.+.+++.+..+ .|+.+..+.+ ....+.-|-. ...|-++.+.+++++++.+++
T Consensus 3 ~~~l~~~i~~al~dkKa----~DI~vlDv~~~s~~~DyfVIa-tg~S~rqv~Aiad~v~~~lk~ 61 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKA----EQVVALNMKGISLIADFFLIC-HGNSEKQVQAIAHELKKVAQE 61 (125)
T ss_dssp CHHHHHHHHHHHHHTTC----EEEEEEECBTTBC--CEEEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----CCeEEEEcCCCCcccCEEEEE-EcCCHHHHHHHHHHHHHHHHH
Confidence 35677788888877543 4555655544 4445544444 444669999999999999974
No 74
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=20.76 E-value=2.4e+02 Score=20.33 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCe--------------EEEEEEEEeCCCCChhHHHHHHHHHHHHHhcC
Q 022609 198 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVL--------------YFVEVDIELPEELPLKEAHAIGESLQNKIEKL 263 (294)
Q Consensus 198 ~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~--------------~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~ 263 (294)
-.+++..+++++++.+.+|+...---.+...|+. -.+.+.+.+++ ++++++.+.|.+..+.
T Consensus 29 IIrP~kld~V~daL~~~~gi~G~TvseV~G~Grqkg~~S~~E~yrG~epKvkiEivv~d----~~ve~vv~aI~~~a~t- 103 (120)
T 3ce8_A 29 IAQNDIKDDIVDTLIELEFLSGFSLGNICGFSREHSHFNIKEQVEGYREFCKFEIMHPA----AQQAALLTALALVCKH- 103 (120)
T ss_dssp EEEGGGHHHHHHHHTTCTTCCCCEEEEEEEEECC-----------EEEEEEEEEEEEEG----GGHHHHHHHHHHHTTT-
T ss_pred EeCHHHHHHHHHHHHhCCCCCcEEEEeeEEeCCCCCCCCceeEEecCCceEEEEEEECH----HHHHHHHHHHHHHcCC-
Confidence 4578899999999999877765443333333321 12445555543 5677788888777643
Q ss_pred CCcceEEEE
Q 022609 264 PEVERAFVH 272 (294)
Q Consensus 264 ~~v~~v~i~ 272 (294)
.++ .++|.
T Consensus 104 g~I-KIfV~ 111 (120)
T 3ce8_A 104 NPC-RYWIM 111 (120)
T ss_dssp SCC-EEEEE
T ss_pred CCE-EEEEE
Confidence 234 44443
No 75
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=20.56 E-value=1.4e+02 Score=21.13 Aligned_cols=44 Identities=5% Similarity=-0.006 Sum_probs=31.4
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHhcCCC--cceEEEEeeccC
Q 022609 234 VEVDIELPEELPLKEAHAIGESLQNKIEKLPE--VERAFVHLDYEC 277 (294)
Q Consensus 234 v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~--v~~v~i~~ep~~ 277 (294)
+.++|..-+..+.++-.++.+++.+.+++..| ..++.|.+....
T Consensus 58 ~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 58 AVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp EEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECC
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECC
Confidence 45666666778888888899999988864333 357888877654
No 76
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=20.40 E-value=2.4e+02 Score=21.57 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHhcCCCcceEE
Q 022609 201 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAF 270 (294)
Q Consensus 201 ~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~ 270 (294)
+...++|...+.+.. .++..+.+....+.-...+.+.++.+ .+..+.+.+++++.++|.+|.
T Consensus 15 pGvL~rI~~lfs~rg--~NI~Sl~v~~t~d~g~sritivV~~d------~~~leql~kQL~Kl~dV~~V~ 76 (165)
T 2pc6_A 15 AGALSRVAGLFSARG--YNIESLSVAPTEDPTLSRMTLVTNGP------DEIVEQITKQLNKLIEVVKLI 76 (165)
T ss_dssp TTHHHHHHHHHHHHT--CCCCEEEEEECSSTTEEEEEEEEEEC------HHHHHHHHHHHHHSTTEEEEE
T ss_pred CcHHHHHHHHHHHCC--CcEEEEEEEecCCCCEEEEEEEEecc------HHHHHHHHHHhcCCCCEEEEE
Confidence 567888888887764 57888877655432233444455433 456777788888877877665
No 77
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=20.13 E-value=1.3e+02 Score=21.04 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=31.1
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHhcCCC--cceEEEEeeccCCC
Q 022609 234 VEVDIELPEELPLKEAHAIGESLQNKIEKLPE--VERAFVHLDYECDH 279 (294)
Q Consensus 234 v~~~i~v~~~~~v~~~~~i~~~i~~~l~~~~~--v~~v~i~~ep~~~~ 279 (294)
+.++|..-+..+.++-.++.+++.+.+++..| ..++.|.+.....+
T Consensus 58 ~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~ 105 (115)
T 2xcz_A 58 CYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYIGFEDVPAR 105 (115)
T ss_dssp EEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGG
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECCHH
Confidence 44555555667888888888888888864323 35788888765433
Done!