RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 022609
(294 letters)
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 152 bits (386), Expect = 2e-44
Identities = 73/280 (26%), Positives = 146/280 (52%), Gaps = 12/280 (4%)
Query: 1 MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFT-HVAMKNINIYKY 59
IS N+ L K+ A I +GS+A+ A + SL D++A I+ ++ K + +
Sbjct: 15 ALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPD-RDH 73
Query: 60 PIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATV 119
P G + + + +I + ++ GF++L+EA+++L+ +P + + + + V
Sbjct: 74 PYGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLA-----LGVALISIV 128
Query: 120 VKLALWIY----CKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILL 175
+K AL+ Y K + ++ + A A H DV+T++ LV + + W+DP A+L+
Sbjct: 129 IKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSLLGWPWLDPLAALLI 188
Query: 176 AVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVE 235
++Y + E+ L+ + PE L+K+ +++ P VK + +R G F++
Sbjct: 189 SLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRKSGSRIFID 248
Query: 236 VDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLD 274
V IE+ +L L+EAH I + ++ +I+K P+V +H++
Sbjct: 249 VHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVE 288
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 145 bits (369), Expect = 3e-42
Identities = 66/279 (23%), Positives = 139/279 (49%), Gaps = 14/279 (5%)
Query: 10 VLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPV 69
+L K+ A + +GS+A+ A L SL+DL++ + ++P G R++P+
Sbjct: 1 LLALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEPL 60
Query: 70 GIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCK 129
+I + ++ +G +L E++E+L+ E ++ + + + + VV L L +Y +
Sbjct: 61 AALIVSLLLLGVGVFILYESIERLISPEE------IEPGGILLVALISLVVNLLLALYLR 114
Query: 130 SSGNKI------VRAYAKDHYFDVVTNVVGLVAAVLGDSFYW-WIDPAGAILLAVYTITN 182
+G KI +RA A DV+ ++ L+ +L DP ++L+A+ +
Sbjct: 115 RAGRKIGKKSSALRADALHALVDVLGSLAVLIGLLLILLTGLPIADPLASLLIALLILYT 174
Query: 183 WSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPE 242
+ E+ L+G S PE++ ++ + + P V + +R + G YFV++ IE+
Sbjct: 175 GLRLLKESLSELLGASPDPELVDEIRDALEKLPGVLGVHDLRVWKSGPKYFVDIHIEVDP 234
Query: 243 ELPLKEAHAIGESLQNKI-EKLPEVERAFVHLDYECDHK 280
+L ++EAH I + ++ + EK P + +H++ + +
Sbjct: 235 DLTVEEAHEIADEIERALKEKFPGIADVTIHVEPAPEVE 273
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 115 bits (291), Expect = 9e-31
Identities = 61/274 (22%), Positives = 128/274 (46%), Gaps = 13/274 (4%)
Query: 10 VLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFT-HVAMKNINIYKYPIGKLRVQP 68
+L+ KI + SGS+A+ A + SL D+ A I ++ + + ++P G R +
Sbjct: 1 LLMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPAD-ERHPFGHGRAEI 59
Query: 69 VGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYC 128
+ ++ + + +L EA+E+L+ EP + + I +V L L +Y
Sbjct: 60 LAALLNGLFLVVVALFILYEAIERLINPEPEIDGG-----TMLIVAIVGLIVNLILALYL 114
Query: 129 KSSG----NKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWS 184
G + +RA A D +++V L+ A+L + W DP A+L+++ +
Sbjct: 115 HRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWHWADPIAALLISLLILYTAF 174
Query: 185 ETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLY-FVEVDIELPEE 243
+ E+ L+ + E L+++ ++ P VK + + + G F++V + + +
Sbjct: 175 RLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPD 234
Query: 244 LPLKEAHAIGESLQNKI-EKLPEVERAFVHLDYE 276
L LK+AH I ++ +I ++ P +E + ++
Sbjct: 235 LDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed.
Length = 299
Score = 55.4 bits (134), Expect = 7e-09
Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 47/274 (17%)
Query: 10 VLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPI-------- 61
+LL KIFA +GS+++ A+ +DSL+D+ A ++ N+ + +Y +
Sbjct: 22 LLLLIKIFAWWYTGSVSLLAALVDSLVDIAA---------SLTNLLVVRYSLQPADDEHT 72
Query: 62 ---GKLR-----VQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSI 113
GK Q + I A + G Q LI P MN + + ++
Sbjct: 73 FGHGKAESLAALAQSMFISGSALFLFLTGIQHLIS----------PTPMNDPGVGIIVTL 122
Query: 114 MIGATVVKLAL-----WIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWW-- 166
+ A + L L W+ + + ++ VRA + DV+ N L+A LG S+Y W
Sbjct: 123 V--ALICTLILVTFQRWV-VRKTQSQAVRADMLHYQSDVMMNGAILLA--LGLSWYGWHR 177
Query: 167 IDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAY 226
D A+ + +Y + + E SL+ ++ P E Q++ +V P V +R
Sbjct: 178 ADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTR 237
Query: 227 TFGVLYFVEVDIELPEELPLKEAHAIGESLQNKI 260
G F+++ +E+ + LPL +AH I + ++ +
Sbjct: 238 QSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQAL 271
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism].
Length = 296
Score = 49.2 bits (118), Expect = 7e-07
Identities = 43/214 (20%), Positives = 97/214 (45%), Gaps = 21/214 (9%)
Query: 16 IFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFA 75
I + +GS+A+ A L L D +A + + ++ G R++ + + A
Sbjct: 39 IIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNA 98
Query: 76 AIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKL-----ALWIYCK- 129
++ + +L EA+++L+ P YS M+ ++ L + + K
Sbjct: 99 LLLIVVSLLILWEAIQRLLAPPPIH----------YSGMLVVAIIGLVVNLVSALLLHKG 148
Query: 130 SSGNKIVRAYAKDHYF-DVVTNVVGLVAAVLGDSFYW-WIDPAGAILLAVYTITNWSETV 187
N +R A H D + +V ++AA++ W W+DP +I++A+ I + + +
Sbjct: 149 HEENLNMRG-AYLHVLGDALGSVGVIIAAIVIRFTGWSWLDPILSIVIALL-ILSSAWPL 206
Query: 188 MENAVSLVGQSAPPEI-LQKLTYLVIRHPEVKRI 220
++ +++++ + P I + K+ ++R P V +
Sbjct: 207 LKESLNILLEGVPEGIDIDKVREALLRIPGVASV 240
>gnl|CDD|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 314
Score = 40.9 bits (96), Expect = 5e-04
Identities = 53/284 (18%), Positives = 99/284 (34%), Gaps = 28/284 (9%)
Query: 1 MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDL-MAGGILWFTHVAMKNINIYKY 59
++IS ++ A I + SGS++I + SL+D M L + + K+ ++
Sbjct: 22 LRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARF 81
Query: 60 PIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATV 119
P G ++P+ + I ++A L LI A+ L+ ++E ++I
Sbjct: 82 PYGFWHLEPLVLAINGTLLALLCLYALINALGSLLD-------GGREVEPGHAIAYTLVS 134
Query: 120 VKLALWIYCKSSG------NKIVRAYAKDHYFDVVTNVVGLVA-----AVLGDSFYW--- 165
V I K + ++ K + VA + G F
Sbjct: 135 VTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLLAGTKFAHLVV 194
Query: 166 WIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRA 225
+ DP L+ + I TV A+ + P E+ Q + E +
Sbjct: 195 YADPMVLALVCLVFIPLPLGTVKS-ALREILLMTPNELQQSIESHAHEIVEKYGFPSYHV 253
Query: 226 YT--FGVLYFVEVDIELPEELPLKEAH---AIGESLQNKIEKLP 264
Y G F+E+ +P E + I + + + L
Sbjct: 254 YVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLG 297
>gnl|CDD|181462 PRK08537, PRK08537, 2-oxoglutarate ferredoxin oxidoreductase
subunit gamma; Validated.
Length = 177
Score = 31.9 bits (73), Expect = 0.20
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 52 KNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLI------EAVEKLVKDEPPK---KM 102
K + +YK P ++ + +G+ I A I+ LG + EA+EK + D PK +
Sbjct: 108 KKVKVYKVPFTEIAEEEIGLSIVANIV-MLGALTKLTGIVSKEAIEKAILDSVPKGTEEK 166
Query: 103 NTVQLE 108
N + E
Sbjct: 167 NLMAFE 172
>gnl|CDD|227102 COG4760, COG4760, Predicted membrane protein [Function unknown].
Length = 276
Score = 31.0 bits (70), Expect = 0.62
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 68 PVGII--IFAAIMATLGFQVLIEAVEKLVKDEPPKKMN-------TVQLEWLY 111
P GII +F +A F + +A +++V+ P+KM TV L WLY
Sbjct: 211 PFGIIFSLFCIGIAAFSFLLDFDAADQMVRAGAPEKMAWGVALGLTVTLVWLY 263
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 29.1 bits (65), Expect = 3.1
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 19/78 (24%)
Query: 186 TVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELP---E 242
TV+E A +++G++APP +Q+ YL+ RH + GV + IE E
Sbjct: 171 TVIELAATVMGRNAPP-PVQR--YLLQRHQQA-----------GVRILLNNAIEHVVDGE 216
Query: 243 ELPLKEAHAIGESLQNKI 260
++ L GE+LQ +
Sbjct: 217 KVELT--LQSGETLQADV 232
>gnl|CDD|223383 COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion
transport and metabolism].
Length = 326
Score = 27.9 bits (63), Expect = 6.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 148 VTNVVGLVAAVLGDSF-YWWIDPAGAILLAVYTITNWS---ETVMENAVSL 194
V N +G + AVL S +W+ G I LA+ T+T ETV + L
Sbjct: 194 VANAIGPLVAVLISSLPPFWVLVLGGIALALGTLTGGPRVIETVGKKITEL 244
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 28.0 bits (62), Expect = 6.7
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 56 IYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLV---KDEPPKKMNT 104
+Y + +L + P IIF ++ TLG + +E +V DE PK + T
Sbjct: 359 VYPEALTRLPLSPFWAIIFFLMLLTLGLDTMFATIETIVTSVSDEFPKYLRT 410
>gnl|CDD|184699 PRK14478, PRK14478, nitrogenase molybdenum-cofactor biosynthesis
protein NifE; Provisional.
Length = 475
Score = 27.7 bits (62), Expect = 7.5
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 178 YTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYT 227
Y I + S+++ + A LV + A E++++ T +I E K + Y
Sbjct: 271 YGIEDTSDSLRQIARLLVERGADAELVER-TEALIAEEEAKAWAALEPYR 319
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 28.0 bits (63), Expect = 7.9
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 15/59 (25%)
Query: 191 AVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVL------YFVEVDIELPEE 243
+++V Q A +T ++ H +V+ ID +R+ FG+L YF+ V +E EE
Sbjct: 33 VLAMVVQMA-------VTMVL--HGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEE 82
>gnl|CDD|226415 COG3899, COG3899, Predicted ATPase [General function prediction
only].
Length = 849
Score = 27.7 bits (62), Expect = 9.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 235 EVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHL 273
+ I L A+ E L +++KLP R +
Sbjct: 280 QCSIASLGILAT--TDAVVEFLAARLQKLPGTTREVLKA 316
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 27.8 bits (62), Expect = 9.6
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 73 IFAAIMA-TLGFQVLIEAVEKLVKDEPPKKMNTVQL---EWLYSIMIGATVVKLALWIYC 128
IF IM T GFQV+I VE +TV L +W+ +++G + + +
Sbjct: 888 IFVTIMGFTFGFQVII--VEFG-----GSFFSTVSLSIEQWIGCVLLGMLSLIFGVLLRL 940
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.408
Gapped
Lambda K H
0.267 0.0868 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,389,037
Number of extensions: 1530799
Number of successful extensions: 1733
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1715
Number of HSP's successfully gapped: 41
Length of query: 294
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 198
Effective length of database: 6,679,618
Effective search space: 1322564364
Effective search space used: 1322564364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)